AutoCloner

Multiple sequence alignment - TraesCS7A01G429500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G429500	chr7A	100.000	3452	0	0	1	3452	623460159	623456708	0.000000e+00	6375
1	TraesCS7A01G429500	chr7A	93.987	449	24	2	418	866	717180859	717180414	0.000000e+00	676
2	TraesCS7A01G429500	chr7A	93.146	321	12	7	214	524	717181109	717180789	2.430000e-126	462
3	TraesCS7A01G429500	chr7A	97.101	69	1	1	50	117	717181523	717181455	7.830000e-22	115
4	TraesCS7A01G429500	chr7D	96.573	2597	72	7	860	3452	540855993	540853410	0.000000e+00	4287
5	TraesCS7A01G429500	chr7B	95.172	2610	96	8	860	3452	584314991	584312395	0.000000e+00	4095
6	TraesCS7A01G429500	chr7B	91.853	491	39	1	150	639	36501841	36501351	0.000000e+00	684
7	TraesCS7A01G429500	chr7B	93.127	291	18	2	99	387	605428310	605428600	3.180000e-115	425
8	TraesCS7A01G429500	chr7B	89.888	267	18	5	198	462	570266949	570266690	5.520000e-88	335
9	TraesCS7A01G429500	chr3B	91.744	751	54	5	97	846	5598811	5598068	0.000000e+00	1037
10	TraesCS7A01G429500	chr3B	93.115	305	15	2	362	663	456978562	456978863	3.160000e-120	442
11	TraesCS7A01G429500	chr3B	95.161	62	3	0	192	253	256729757	256729696	7.880000e-17	99
12	TraesCS7A01G429500	chrUn	92.211	719	49	4	97	814	464945643	464946355	0.000000e+00	1011
13	TraesCS7A01G429500	chr1B	90.874	515	42	3	157	666	583127108	583126594	0.000000e+00	686
14	TraesCS7A01G429500	chr1B	92.500	440	29	2	253	692	649692789	649692354	8.130000e-176	627
15	TraesCS7A01G429500	chr1B	91.892	296	21	1	380	672	571066249	571065954	8.920000e-111	411
16	TraesCS7A01G429500	chr1B	90.860	186	14	2	684	869	649687307	649687125	2.660000e-61	246
17	TraesCS7A01G429500	chr1B	90.984	122	10	1	97	218	649699646	649699526	2.760000e-36	163
18	TraesCS7A01G429500	chr2B	91.860	258	15	2	409	663	249462215	249462469	4.240000e-94	355
19	TraesCS7A01G429500	chr5A	94.089	203	11	1	54	255	600345762	600345964	1.200000e-79	307
20	TraesCS7A01G429500	chr6A	80.469	384	37	15	488	870	508130749	508130403	3.420000e-65	259
21	TraesCS7A01G429500	chr6A	79.420	345	35	17	481	824	508057359	508057050	9.710000e-51	211
22	TraesCS7A01G429500	chr6A	88.393	112	12	1	261	371	508131046	508130935	2.160000e-27	134
23	TraesCS7A01G429500	chr6B	94.400	125	5	1	624	746	91120580	91120456	1.260000e-44	191
24	TraesCS7A01G429500	chr6B	91.304	92	5	3	50	139	657261218	657261308	4.680000e-24	122
25	TraesCS7A01G429500	chr2D	93.396	106	4	1	97	202	585381982	585381880	1.660000e-33	154
26	TraesCS7A01G429500	chr1A	95.385	65	2	1	50	113	96740490	96740554	6.100000e-18	102
27	TraesCS7A01G429500	chr3D	95.161	62	3	0	192	253	178406904	178406843	7.880000e-17	99

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G429500	chr7A	623456708	623460159	3451	True	6375.000000	6375	100.000000	1	3452	1	chr7A.!!$R1	3451
1	TraesCS7A01G429500	chr7A	717180414	717181523	1109	True	417.666667	676	94.744667	50	866	3	chr7A.!!$R2	816
2	TraesCS7A01G429500	chr7D	540853410	540855993	2583	True	4287.000000	4287	96.573000	860	3452	1	chr7D.!!$R1	2592
3	TraesCS7A01G429500	chr7B	584312395	584314991	2596	True	4095.000000	4095	95.172000	860	3452	1	chr7B.!!$R3	2592
4	TraesCS7A01G429500	chr3B	5598068	5598811	743	True	1037.000000	1037	91.744000	97	846	1	chr3B.!!$R1	749
5	TraesCS7A01G429500	chrUn	464945643	464946355	712	False	1011.000000	1011	92.211000	97	814	1	chrUn.!!$F1	717
6	TraesCS7A01G429500	chr1B	583126594	583127108	514	True	686.000000	686	90.874000	157	666	1	chr1B.!!$R2	509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
181	182	0.256464	TTCTCCTCCTCTCCGTCCTC	59.744	60.0	0.0	0.0	0.0	3.71	F
1830	2140	0.598562	CCACGCTGATATACGGAGCT	59.401	55.0	0.0	0.0	0.0	4.09	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2139	2449	0.107945	GCCCATTCTCGCAGAAGACT	60.108	55.000	5.15	0.0	37.69	3.24	R
2850	3162	2.225091	ACTTCCAGTGCATTCATTCCCA	60.225	45.455	0.00	0.0	0.00	4.37	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	2.450243	GGAGGTGGAGGTGGAGGA	59.550	66.667	0.00	0.00	0.00	3.71
18	19	1.687493	GGAGGTGGAGGTGGAGGAG	60.687	68.421	0.00	0.00	0.00	3.69
19	20	1.687493	GAGGTGGAGGTGGAGGAGG	60.687	68.421	0.00	0.00	0.00	4.30
20	21	2.169590	GAGGTGGAGGTGGAGGAGGA	62.170	65.000	0.00	0.00	0.00	3.71
21	22	1.687493	GGTGGAGGTGGAGGAGGAG	60.687	68.421	0.00	0.00	0.00	3.69
22	23	1.687493	GTGGAGGTGGAGGAGGAGG	60.687	68.421	0.00	0.00	0.00	4.30
23	24	2.041405	GGAGGTGGAGGAGGAGGG	60.041	72.222	0.00	0.00	0.00	4.30
24	25	2.041405	GAGGTGGAGGAGGAGGGG	60.041	72.222	0.00	0.00	0.00	4.79
25	26	3.700350	AGGTGGAGGAGGAGGGGG	61.700	72.222	0.00	0.00	0.00	5.40
26	27	3.695825	GGTGGAGGAGGAGGGGGA	61.696	72.222	0.00	0.00	0.00	4.81
27	28	2.041405	GTGGAGGAGGAGGGGGAG	60.041	72.222	0.00	0.00	0.00	4.30
28	29	3.368501	TGGAGGAGGAGGGGGAGG	61.369	72.222	0.00	0.00	0.00	4.30
29	30	3.036959	GGAGGAGGAGGGGGAGGA	61.037	72.222	0.00	0.00	0.00	3.71
30	31	2.612251	GAGGAGGAGGGGGAGGAG	59.388	72.222	0.00	0.00	0.00	3.69
31	32	3.039526	AGGAGGAGGGGGAGGAGG	61.040	72.222	0.00	0.00	0.00	4.30
32	33	3.036959	GGAGGAGGGGGAGGAGGA	61.037	72.222	0.00	0.00	0.00	3.71
33	34	2.612251	GAGGAGGGGGAGGAGGAG	59.388	72.222	0.00	0.00	0.00	3.69
34	35	3.039526	AGGAGGGGGAGGAGGAGG	61.040	72.222	0.00	0.00	0.00	4.30
35	36	3.369388	GGAGGGGGAGGAGGAGGT	61.369	72.222	0.00	0.00	0.00	3.85
36	37	2.041405	GAGGGGGAGGAGGAGGTG	60.041	72.222	0.00	0.00	0.00	4.00
37	38	3.700350	AGGGGGAGGAGGAGGTGG	61.700	72.222	0.00	0.00	0.00	4.61
38	39	4.825679	GGGGGAGGAGGAGGTGGG	62.826	77.778	0.00	0.00	0.00	4.61
39	40	3.695825	GGGGAGGAGGAGGTGGGA	61.696	72.222	0.00	0.00	0.00	4.37
40	41	2.041405	GGGAGGAGGAGGTGGGAG	60.041	72.222	0.00	0.00	0.00	4.30
41	42	2.637640	GGGAGGAGGAGGTGGGAGA	61.638	68.421	0.00	0.00	0.00	3.71
42	43	1.075600	GGAGGAGGAGGTGGGAGAG	60.076	68.421	0.00	0.00	0.00	3.20
43	44	1.760480	GAGGAGGAGGTGGGAGAGC	60.760	68.421	0.00	0.00	0.00	4.09
44	45	3.151022	GGAGGAGGTGGGAGAGCG	61.151	72.222	0.00	0.00	0.00	5.03
45	46	2.043852	GAGGAGGTGGGAGAGCGA	60.044	66.667	0.00	0.00	0.00	4.93
46	47	2.043450	AGGAGGTGGGAGAGCGAG	60.043	66.667	0.00	0.00	0.00	5.03
47	48	2.043852	GGAGGTGGGAGAGCGAGA	60.044	66.667	0.00	0.00	0.00	4.04
48	49	2.124693	GGAGGTGGGAGAGCGAGAG	61.125	68.421	0.00	0.00	0.00	3.20
181	182	0.256464	TTCTCCTCCTCTCCGTCCTC	59.744	60.000	0.00	0.00	0.00	3.71
342	594	2.908015	GCTTCCCCGTCCATGCTA	59.092	61.111	0.00	0.00	0.00	3.49
460	755	1.492993	GCTTCCTCCCCACCTTGTCT	61.493	60.000	0.00	0.00	0.00	3.41
628	923	2.650116	CCACGCAGAGGGTAGCAGT	61.650	63.158	0.00	0.00	33.55	4.40
765	1063	2.607750	AGACGTGGGTGGAGGCAT	60.608	61.111	0.00	0.00	0.00	4.40
810	1108	1.369209	CAAAATATCTGCCGGCGCG	60.369	57.895	23.90	15.91	38.08	6.86
904	1202	6.239572	CCAAATTCAAAGGTTCCCACATAGTT	60.240	38.462	0.00	0.00	0.00	2.24
950	1254	5.229921	ACGTCAACCAATTATCATTTCCG	57.770	39.130	0.00	0.00	0.00	4.30
1218	1528	4.093952	CTGTTCCGCCGCTTGCTG	62.094	66.667	0.00	0.00	38.05	4.41
1347	1657	4.542627	TCCACCCACCCCCACCTT	62.543	66.667	0.00	0.00	0.00	3.50
1442	1752	3.175240	CGTCAGCCGCTTCGAGTG	61.175	66.667	8.51	0.00	0.00	3.51
1692	2002	4.467084	GGCTTCGTCCCGGATGCA	62.467	66.667	0.73	0.00	38.46	3.96
1830	2140	0.598562	CCACGCTGATATACGGAGCT	59.401	55.000	0.00	0.00	0.00	4.09
1836	2146	2.234908	GCTGATATACGGAGCTGGGATT	59.765	50.000	0.00	0.00	0.00	3.01
2031	2341	2.224185	TGTCACCTACAACACGATGCTT	60.224	45.455	0.00	0.00	34.29	3.91
2139	2449	2.153645	ACGACAATGCTGCTCATGAAA	58.846	42.857	0.00	0.00	35.13	2.69
2145	2455	4.082895	ACAATGCTGCTCATGAAAGTCTTC	60.083	41.667	0.00	0.00	35.13	2.87
2172	2482	4.547367	GGGCGACCGGATCTTGGG	62.547	72.222	9.46	3.51	43.64	4.12
2328	2638	1.432270	GAATGGCACCTACAGAGCGC	61.432	60.000	0.00	0.00	0.00	5.92
2352	2662	2.858787	TCAGGGTTTTGGAAGGGTTT	57.141	45.000	0.00	0.00	0.00	3.27
2385	2695	2.945890	GCGGGAGTTTGGGAAGATTGAT	60.946	50.000	0.00	0.00	0.00	2.57
2431	2741	2.225343	ACCCAATTGGAGGAGCATCAAA	60.225	45.455	26.60	0.00	34.60	2.69
2490	2800	4.109766	GTGGTCCCTTTTGAAAAGAAACG	58.890	43.478	18.59	2.32	0.00	3.60
2492	2802	4.109766	GGTCCCTTTTGAAAAGAAACGTG	58.890	43.478	18.59	1.28	0.00	4.49
2765	3077	7.500992	TGAGTTGATAAAGAGTTTGAGACACT	58.499	34.615	0.00	0.00	0.00	3.55
2850	3162	1.901159	TGTTTGCATAGCCTTTGCCAT	59.099	42.857	4.66	0.00	39.39	4.40
2919	3231	5.575218	ACAATGGTCGAAAGTTTTGTTGAAC	59.425	36.000	9.68	0.00	0.00	3.18
2924	3236	7.632721	TGGTCGAAAGTTTTGTTGAACTATAC	58.367	34.615	2.75	0.00	38.86	1.47
2933	3245	9.574516	AGTTTTGTTGAACTATACCTTTCAGAT	57.425	29.630	0.00	0.00	38.06	2.90
2944	3258	8.316214	ACTATACCTTTCAGATTTAACGGTGAA	58.684	33.333	0.00	0.00	0.00	3.18
3081	3398	6.428465	TGGAAACGTAATCACAAAGCTGAATA	59.572	34.615	0.00	0.00	0.00	1.75
3105	3422	4.143543	TGTCTTCCTTTGATTGATGCACA	58.856	39.130	0.00	0.00	0.00	4.57
3106	3423	4.583907	TGTCTTCCTTTGATTGATGCACAA	59.416	37.500	0.00	0.00	42.95	3.33
3107	3424	4.919754	GTCTTCCTTTGATTGATGCACAAC	59.080	41.667	0.00	0.00	41.52	3.32
3108	3425	4.828939	TCTTCCTTTGATTGATGCACAACT	59.171	37.500	0.00	0.00	41.52	3.16
3109	3426	4.508461	TCCTTTGATTGATGCACAACTG	57.492	40.909	0.00	0.00	41.52	3.16
3110	3427	4.143543	TCCTTTGATTGATGCACAACTGA	58.856	39.130	0.00	0.00	41.52	3.41
3111	3428	4.583907	TCCTTTGATTGATGCACAACTGAA	59.416	37.500	0.00	0.00	41.52	3.02
3112	3429	5.244402	TCCTTTGATTGATGCACAACTGAAT	59.756	36.000	0.00	0.00	41.52	2.57
3113	3430	5.929992	CCTTTGATTGATGCACAACTGAATT	59.070	36.000	0.00	0.00	41.52	2.17
3114	3431	6.425721	CCTTTGATTGATGCACAACTGAATTT	59.574	34.615	0.00	0.00	41.52	1.82
3119	3436	7.756272	TGATTGATGCACAACTGAATTTATGTC	59.244	33.333	0.00	0.00	41.52	3.06
3175	3492	7.510549	TGGTATTTTCTCTCTCAGTTTTTGG	57.489	36.000	0.00	0.00	0.00	3.28
3386	3704	8.200792	TGCATTTTTGTTCAACAAACTACCTAT	58.799	29.630	15.45	0.73	46.53	2.57
3394	3712	7.041644	TGTTCAACAAACTACCTATGCTGTAAC	60.042	37.037	0.00	0.00	38.76	2.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.687493	CTCCTCCACCTCCACCTCC	60.687	68.421	0.00	0.00	0.00	4.30
3	4	1.687493	CTCCTCCTCCACCTCCACC	60.687	68.421	0.00	0.00	0.00	4.61
5	6	2.780693	CCTCCTCCTCCACCTCCA	59.219	66.667	0.00	0.00	0.00	3.86
6	7	2.041405	CCCTCCTCCTCCACCTCC	60.041	72.222	0.00	0.00	0.00	4.30
7	8	2.041405	CCCCTCCTCCTCCACCTC	60.041	72.222	0.00	0.00	0.00	3.85
8	9	3.700350	CCCCCTCCTCCTCCACCT	61.700	72.222	0.00	0.00	0.00	4.00
9	10	3.695825	TCCCCCTCCTCCTCCACC	61.696	72.222	0.00	0.00	0.00	4.61
10	11	2.041405	CTCCCCCTCCTCCTCCAC	60.041	72.222	0.00	0.00	0.00	4.02
11	12	3.368501	CCTCCCCCTCCTCCTCCA	61.369	72.222	0.00	0.00	0.00	3.86
12	13	3.036959	TCCTCCCCCTCCTCCTCC	61.037	72.222	0.00	0.00	0.00	4.30
13	14	2.612251	CTCCTCCCCCTCCTCCTC	59.388	72.222	0.00	0.00	0.00	3.71
14	15	3.039526	CCTCCTCCCCCTCCTCCT	61.040	72.222	0.00	0.00	0.00	3.69
15	16	3.036959	TCCTCCTCCCCCTCCTCC	61.037	72.222	0.00	0.00	0.00	4.30
16	17	2.612251	CTCCTCCTCCCCCTCCTC	59.388	72.222	0.00	0.00	0.00	3.71
17	18	3.039526	CCTCCTCCTCCCCCTCCT	61.040	72.222	0.00	0.00	0.00	3.69
18	19	3.369388	ACCTCCTCCTCCCCCTCC	61.369	72.222	0.00	0.00	0.00	4.30
19	20	2.041405	CACCTCCTCCTCCCCCTC	60.041	72.222	0.00	0.00	0.00	4.30
20	21	3.700350	CCACCTCCTCCTCCCCCT	61.700	72.222	0.00	0.00	0.00	4.79
21	22	4.825679	CCCACCTCCTCCTCCCCC	62.826	77.778	0.00	0.00	0.00	5.40
22	23	3.695825	TCCCACCTCCTCCTCCCC	61.696	72.222	0.00	0.00	0.00	4.81
23	24	2.041405	CTCCCACCTCCTCCTCCC	60.041	72.222	0.00	0.00	0.00	4.30
24	25	1.075600	CTCTCCCACCTCCTCCTCC	60.076	68.421	0.00	0.00	0.00	4.30
25	26	1.760480	GCTCTCCCACCTCCTCCTC	60.760	68.421	0.00	0.00	0.00	3.71
26	27	2.366570	GCTCTCCCACCTCCTCCT	59.633	66.667	0.00	0.00	0.00	3.69
27	28	3.151022	CGCTCTCCCACCTCCTCC	61.151	72.222	0.00	0.00	0.00	4.30
28	29	2.043852	TCGCTCTCCCACCTCCTC	60.044	66.667	0.00	0.00	0.00	3.71
29	30	2.043450	CTCGCTCTCCCACCTCCT	60.043	66.667	0.00	0.00	0.00	3.69
30	31	2.043852	TCTCGCTCTCCCACCTCC	60.044	66.667	0.00	0.00	0.00	4.30
31	32	2.781158	GCTCTCGCTCTCCCACCTC	61.781	68.421	0.00	0.00	0.00	3.85
32	33	2.757917	GCTCTCGCTCTCCCACCT	60.758	66.667	0.00	0.00	0.00	4.00
33	34	4.200283	CGCTCTCGCTCTCCCACC	62.200	72.222	0.00	0.00	0.00	4.61
34	35	3.119709	CTCGCTCTCGCTCTCCCAC	62.120	68.421	0.00	0.00	35.26	4.61
35	36	2.826287	CTCGCTCTCGCTCTCCCA	60.826	66.667	0.00	0.00	35.26	4.37
36	37	2.515057	TCTCGCTCTCGCTCTCCC	60.515	66.667	0.00	0.00	35.26	4.30
37	38	3.022287	CTCTCGCTCTCGCTCTCC	58.978	66.667	0.00	0.00	35.26	3.71
38	39	2.327940	GCTCTCGCTCTCGCTCTC	59.672	66.667	0.00	0.00	35.26	3.20
39	40	3.209097	GGCTCTCGCTCTCGCTCT	61.209	66.667	0.00	0.00	36.09	4.09
40	41	3.513438	TGGCTCTCGCTCTCGCTC	61.513	66.667	0.00	0.00	36.09	5.03
41	42	3.821055	GTGGCTCTCGCTCTCGCT	61.821	66.667	0.00	0.00	36.09	4.93
155	156	1.289530	GGAGAGGAGGAGAAGGAGGAA	59.710	57.143	0.00	0.00	0.00	3.36
163	164	1.916738	GAGGACGGAGAGGAGGAGA	59.083	63.158	0.00	0.00	0.00	3.71
328	580	3.151710	CGGTAGCATGGACGGGGA	61.152	66.667	0.00	0.00	0.00	4.81
452	704	2.915659	TCCGCCACGAGACAAGGT	60.916	61.111	0.00	0.00	0.00	3.50
674	972	2.434359	GGGTCGTTGCTTCCCGAG	60.434	66.667	0.00	0.00	33.10	4.63
810	1108	0.615827	ATTTTCAGCTTCCTGGGGGC	60.616	55.000	0.00	0.00	39.61	5.80
863	1161	2.107950	TTGGTGGCACGAATCTTAGG	57.892	50.000	11.22	0.00	0.00	2.69
904	1202	1.001520	TCAGGAACGATTTTCCAGCGA	59.998	47.619	5.85	0.00	41.00	4.93
950	1254	1.544246	CGGGGGAGGAATTTGACAAAC	59.456	52.381	1.94	0.00	0.00	2.93
1218	1528	3.412408	GGGAAGTGGGGGAGCTCC	61.412	72.222	25.59	25.59	0.00	4.70
1692	2002	0.251209	TCCTCACGCAGTAGGACACT	60.251	55.000	0.00	0.00	41.61	3.55
1830	2140	2.668632	GCGTCCCTCACAATCCCA	59.331	61.111	0.00	0.00	0.00	4.37
1863	2173	1.266718	TGCTCCATTTCGTCAAACAGC	59.733	47.619	0.00	0.00	0.00	4.40
1975	2285	1.227497	CCTTCTGCTCCATCTCGCC	60.227	63.158	0.00	0.00	0.00	5.54
2031	2341	1.774217	AGCCCTCTGGAACCCACAA	60.774	57.895	0.00	0.00	0.00	3.33
2053	2363	4.354208	TCTTCCAGATCCCCTCTAAGTT	57.646	45.455	0.00	0.00	31.13	2.66
2058	2368	6.067961	TGCTATATATCTTCCAGATCCCCTCT	60.068	42.308	0.00	0.00	36.20	3.69
2079	2389	2.158711	CCCTGAGCCAATCATCTTGCTA	60.159	50.000	0.00	0.00	37.28	3.49
2139	2449	0.107945	GCCCATTCTCGCAGAAGACT	60.108	55.000	5.15	0.00	37.69	3.24
2145	2455	2.892425	GGTCGCCCATTCTCGCAG	60.892	66.667	0.00	0.00	0.00	5.18
2172	2482	1.419387	AGATAATCCCACAGCTCCAGC	59.581	52.381	0.00	0.00	42.49	4.85
2328	2638	1.067635	CCTTCCAAAACCCTGAATGCG	60.068	52.381	0.00	0.00	0.00	4.73
2352	2662	2.930826	ACTCCCGCTTCTTCTTCAAA	57.069	45.000	0.00	0.00	0.00	2.69
2385	2695	4.581824	GCCTTCATCATTTGCCTAATCTCA	59.418	41.667	0.00	0.00	0.00	3.27
2431	2741	1.069204	TCACGCAGCTTCTTCTTCAGT	59.931	47.619	0.00	0.00	0.00	3.41
2765	3077	3.573967	GGCTCCACAAAAATTCCTTCTCA	59.426	43.478	0.00	0.00	0.00	3.27
2850	3162	2.225091	ACTTCCAGTGCATTCATTCCCA	60.225	45.455	0.00	0.00	0.00	4.37
2919	3231	8.712285	TTCACCGTTAAATCTGAAAGGTATAG	57.288	34.615	0.00	0.00	36.65	1.31
2924	3236	6.908825	TCATTTCACCGTTAAATCTGAAAGG	58.091	36.000	7.71	7.71	36.37	3.11
2944	3258	4.331108	GCTGGGAGAGAAGAAAACTCATT	58.669	43.478	0.00	0.00	36.91	2.57
3028	3345	9.962783	GTCAGTACTTCAGTCTTTTAGTTCTAA	57.037	33.333	0.00	0.00	0.00	2.10
3029	3346	9.128404	TGTCAGTACTTCAGTCTTTTAGTTCTA	57.872	33.333	0.00	0.00	0.00	2.10
3081	3398	5.244402	TGTGCATCAATCAAAGGAAGACAAT	59.756	36.000	0.00	0.00	0.00	2.71
3105	3422	8.807118	TGACAGAGTAGAGACATAAATTCAGTT	58.193	33.333	0.00	0.00	0.00	3.16
3106	3423	8.354711	TGACAGAGTAGAGACATAAATTCAGT	57.645	34.615	0.00	0.00	0.00	3.41
3107	3424	9.081997	GTTGACAGAGTAGAGACATAAATTCAG	57.918	37.037	0.00	0.00	0.00	3.02
3108	3425	8.807118	AGTTGACAGAGTAGAGACATAAATTCA	58.193	33.333	0.00	0.00	0.00	2.57
3109	3426	9.081997	CAGTTGACAGAGTAGAGACATAAATTC	57.918	37.037	0.00	0.00	0.00	2.17
3110	3427	8.807118	TCAGTTGACAGAGTAGAGACATAAATT	58.193	33.333	0.00	0.00	0.00	1.82
3111	3428	8.354711	TCAGTTGACAGAGTAGAGACATAAAT	57.645	34.615	0.00	0.00	0.00	1.40
3112	3429	7.761038	TCAGTTGACAGAGTAGAGACATAAA	57.239	36.000	0.00	0.00	0.00	1.40
3113	3430	7.230712	TGTTCAGTTGACAGAGTAGAGACATAA	59.769	37.037	0.00	0.00	0.00	1.90
3114	3431	6.715264	TGTTCAGTTGACAGAGTAGAGACATA	59.285	38.462	0.00	0.00	0.00	2.29
3119	3436	4.233789	GCTGTTCAGTTGACAGAGTAGAG	58.766	47.826	8.33	0.00	33.65	2.43
3175	3492	3.058016	TGACAGTACGTGTAGCTGTAACC	60.058	47.826	13.88	6.04	42.71	2.85
3372	3690	6.649141	TCTGTTACAGCATAGGTAGTTTGTTG	59.351	38.462	7.61	0.00	0.00	3.33
3376	3694	8.863872	AATTTCTGTTACAGCATAGGTAGTTT	57.136	30.769	7.61	0.00	0.00	2.66
3394	3712	7.173907	TCTCTTTTCTGAGCCTGTAAATTTCTG	59.826	37.037	0.00	0.00	34.29	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.