Multiple sequence alignment - TraesCS7A01G429100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G429100 chr7A 100.000 3524 0 0 1 3524 623324348 623320825 0.000000e+00 6508.0
1 TraesCS7A01G429100 chr7A 86.048 1240 113 33 992 2207 622373496 622372293 0.000000e+00 1277.0
2 TraesCS7A01G429100 chr7A 84.879 1283 131 39 938 2207 624807298 624808530 0.000000e+00 1236.0
3 TraesCS7A01G429100 chr7A 91.030 301 22 3 2278 2575 624808526 624808824 5.480000e-108 401.0
4 TraesCS7A01G429100 chr7A 89.735 302 25 4 2278 2575 622372297 622371998 7.140000e-102 381.0
5 TraesCS7A01G429100 chr7A 88.492 252 18 4 2683 2933 624808816 624809057 9.570000e-76 294.0
6 TraesCS7A01G429100 chr7A 90.419 167 10 2 2743 2909 622371971 622371811 7.660000e-52 215.0
7 TraesCS7A01G429100 chr7A 96.825 63 2 0 3336 3398 623320954 623320892 4.810000e-19 106.0
8 TraesCS7A01G429100 chr7A 96.825 63 2 0 3395 3457 623321013 623320951 4.810000e-19 106.0
9 TraesCS7A01G429100 chr7D 94.163 1936 85 10 622 2542 540793888 540791966 0.000000e+00 2924.0
10 TraesCS7A01G429100 chr7D 86.252 1302 121 36 936 2207 541494678 541495951 0.000000e+00 1360.0
11 TraesCS7A01G429100 chr7D 87.248 1239 93 33 994 2207 540716451 540715253 0.000000e+00 1352.0
12 TraesCS7A01G429100 chr7D 89.430 596 46 14 2683 3276 540791964 540791384 0.000000e+00 736.0
13 TraesCS7A01G429100 chr7D 90.604 298 26 2 2278 2575 541495947 541496242 9.170000e-106 394.0
14 TraesCS7A01G429100 chr7D 90.734 259 22 2 2278 2535 540715257 540715000 9.370000e-91 344.0
15 TraesCS7A01G429100 chr7D 89.286 252 15 5 2683 2933 541496234 541496474 4.420000e-79 305.0
16 TraesCS7A01G429100 chr7D 90.950 221 9 6 54 268 540794693 540794478 1.600000e-73 287.0
17 TraesCS7A01G429100 chr7D 90.647 139 11 2 411 549 540794365 540794229 2.160000e-42 183.0
18 TraesCS7A01G429100 chr7D 96.923 65 2 0 1 65 540794772 540794708 3.720000e-20 110.0
19 TraesCS7A01G429100 chr7D 83.721 86 12 2 2356 2440 421790046 421789962 2.920000e-11 80.5
20 TraesCS7A01G429100 chr7B 87.984 1240 100 27 1380 2575 584270015 584268781 0.000000e+00 1419.0
21 TraesCS7A01G429100 chr7B 86.775 862 95 14 1359 2207 585487205 585488060 0.000000e+00 942.0
22 TraesCS7A01G429100 chr7B 88.082 730 60 18 2683 3398 584268789 584268073 0.000000e+00 841.0
23 TraesCS7A01G429100 chr7B 84.535 860 86 20 1371 2207 584036600 584035765 0.000000e+00 808.0
24 TraesCS7A01G429100 chr7B 88.235 340 29 9 925 1258 585486819 585487153 2.550000e-106 396.0
25 TraesCS7A01G429100 chr7B 88.966 290 30 2 2278 2567 584035769 584035482 1.200000e-94 357.0
26 TraesCS7A01G429100 chr7B 89.377 273 26 3 2278 2548 585488056 585488327 1.210000e-89 340.0
27 TraesCS7A01G429100 chr7B 94.149 188 11 0 1078 1265 584270301 584270114 1.600000e-73 287.0
28 TraesCS7A01G429100 chr7B 93.069 101 7 0 2833 2933 584035386 584035286 7.880000e-32 148.0
29 TraesCS7A01G429100 chr7B 83.721 86 12 2 2356 2440 439419478 439419562 2.920000e-11 80.5
30 TraesCS7A01G429100 chr2B 84.195 348 47 8 2960 3303 403696773 403696430 7.290000e-87 331.0
31 TraesCS7A01G429100 chr2B 90.476 105 7 1 2576 2680 396725535 396725434 6.140000e-28 135.0
32 TraesCS7A01G429100 chr2A 82.532 395 52 10 2960 3341 446066655 446066265 7.290000e-87 331.0
33 TraesCS7A01G429100 chr2A 82.911 316 42 10 2960 3271 762453733 762453426 1.250000e-69 274.0
34 TraesCS7A01G429100 chr2A 90.476 105 7 1 2576 2680 718972012 718971911 6.140000e-28 135.0
35 TraesCS7A01G429100 chr3D 83.072 319 42 9 2960 3271 27661508 27661195 2.680000e-71 279.0
36 TraesCS7A01G429100 chr5A 79.231 390 69 10 2959 3340 64372850 64373235 9.700000e-66 261.0
37 TraesCS7A01G429100 chr3A 79.769 346 54 12 2960 3299 581865947 581866282 1.640000e-58 237.0
38 TraesCS7A01G429100 chr2D 79.487 351 59 10 2959 3303 420571173 420570830 1.640000e-58 237.0
39 TraesCS7A01G429100 chr3B 90.566 106 7 1 2572 2677 699701438 699701540 1.710000e-28 137.0
40 TraesCS7A01G429100 chr1D 90.566 106 7 1 2575 2680 399437663 399437561 1.710000e-28 137.0
41 TraesCS7A01G429100 chr1D 89.623 106 8 1 2575 2680 190578904 190578802 7.940000e-27 132.0
42 TraesCS7A01G429100 chr6D 90.291 103 7 1 2575 2677 142326667 142326766 7.940000e-27 132.0
43 TraesCS7A01G429100 chr6D 89.623 106 8 1 2575 2680 345490426 345490324 7.940000e-27 132.0
44 TraesCS7A01G429100 chr6D 90.291 103 7 1 2575 2677 466035086 466035185 7.940000e-27 132.0
45 TraesCS7A01G429100 chr5D 90.291 103 7 1 2575 2677 281074717 281074816 7.940000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G429100 chr7A 623320825 623324348 3523 True 2240.000000 6508 97.883333 1 3524 3 chr7A.!!$R2 3523
1 TraesCS7A01G429100 chr7A 624807298 624809057 1759 False 643.666667 1236 88.133667 938 2933 3 chr7A.!!$F1 1995
2 TraesCS7A01G429100 chr7A 622371811 622373496 1685 True 624.333333 1277 88.734000 992 2909 3 chr7A.!!$R1 1917
3 TraesCS7A01G429100 chr7D 540715000 540716451 1451 True 848.000000 1352 88.991000 994 2535 2 chr7D.!!$R2 1541
4 TraesCS7A01G429100 chr7D 540791384 540794772 3388 True 848.000000 2924 92.422600 1 3276 5 chr7D.!!$R3 3275
5 TraesCS7A01G429100 chr7D 541494678 541496474 1796 False 686.333333 1360 88.714000 936 2933 3 chr7D.!!$F1 1997
6 TraesCS7A01G429100 chr7B 584268073 584270301 2228 True 849.000000 1419 90.071667 1078 3398 3 chr7B.!!$R2 2320
7 TraesCS7A01G429100 chr7B 585486819 585488327 1508 False 559.333333 942 88.129000 925 2548 3 chr7B.!!$F2 1623
8 TraesCS7A01G429100 chr7B 584035286 584036600 1314 True 437.666667 808 88.856667 1371 2933 3 chr7B.!!$R1 1562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 334 0.032952 CTGGTTCGTTCAGGTTCGGA 59.967 55.0 0.0 0.0 0.0 4.55 F
306 339 0.032952 TCGTTCAGGTTCGGAGTTGG 59.967 55.0 0.0 0.0 0.0 3.77 F
307 340 0.032952 CGTTCAGGTTCGGAGTTGGA 59.967 55.0 0.0 0.0 0.0 3.53 F
656 971 0.234106 CAGCAAAGCGACAGACACAG 59.766 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1730 0.032678 ACGTGAGAGCAGAACACTGG 59.967 55.000 0.00 0.0 33.13 4.00 R
2239 2690 0.398696 AACCGGTAGCCATTGTGTGA 59.601 50.000 8.00 0.0 0.00 3.58 R
2391 2842 2.102357 CAGCTCACGTACGCCGAT 59.898 61.111 16.72 0.0 40.70 4.18 R
2680 3136 0.031178 GCTCAAACTGTTGCAGTGGG 59.969 55.000 2.31 0.0 44.62 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.306919 GGGAATGTTAGGTTACGTGGTGA 60.307 47.826 0.00 0.00 0.00 4.02
62 63 5.048504 TGTTGCTGATCTTTGTTCCATCTTC 60.049 40.000 0.00 0.00 0.00 2.87
65 66 5.413833 TGCTGATCTTTGTTCCATCTTCTTC 59.586 40.000 0.00 0.00 0.00 2.87
67 68 6.403418 GCTGATCTTTGTTCCATCTTCTTCTG 60.403 42.308 0.00 0.00 0.00 3.02
68 69 6.772605 TGATCTTTGTTCCATCTTCTTCTGA 58.227 36.000 0.00 0.00 0.00 3.27
70 71 7.336176 TGATCTTTGTTCCATCTTCTTCTGATG 59.664 37.037 0.00 0.00 40.51 3.07
71 72 6.772605 TCTTTGTTCCATCTTCTTCTGATGA 58.227 36.000 5.42 0.00 42.68 2.92
119 150 1.019673 GCCATATGCCCATATCAGCG 58.980 55.000 0.00 0.00 31.98 5.18
142 173 0.786435 AGTTGGCAAGAGGGGGAAAT 59.214 50.000 0.00 0.00 0.00 2.17
156 187 2.033448 AAATTGCACTCCGGCCGA 59.967 55.556 30.73 12.25 0.00 5.54
157 188 1.376609 GAAATTGCACTCCGGCCGAT 61.377 55.000 30.73 9.03 0.00 4.18
158 189 0.107410 AAATTGCACTCCGGCCGATA 60.107 50.000 30.73 13.89 0.00 2.92
236 269 1.669211 GGGCGTACTAATGCTCGATCC 60.669 57.143 0.00 0.00 37.78 3.36
239 272 2.726760 GCGTACTAATGCTCGATCCTTG 59.273 50.000 0.00 0.00 34.60 3.61
253 286 2.022764 TCCTTGTACATGCCACATCG 57.977 50.000 0.00 0.00 0.00 3.84
279 312 6.573434 CAGGAGTGCACTATACAGAATTACA 58.427 40.000 21.73 0.00 0.00 2.41
280 313 6.699204 CAGGAGTGCACTATACAGAATTACAG 59.301 42.308 21.73 0.00 0.00 2.74
281 314 6.607600 AGGAGTGCACTATACAGAATTACAGA 59.392 38.462 21.73 0.00 0.00 3.41
282 315 6.697892 GGAGTGCACTATACAGAATTACAGAC 59.302 42.308 21.73 0.11 0.00 3.51
283 316 7.411486 AGTGCACTATACAGAATTACAGACT 57.589 36.000 20.16 0.00 0.00 3.24
284 317 7.261325 AGTGCACTATACAGAATTACAGACTG 58.739 38.462 20.16 0.00 37.62 3.51
288 321 7.222999 GCACTATACAGAATTACAGACTGGTTC 59.777 40.741 7.51 8.17 36.17 3.62
289 322 7.432545 CACTATACAGAATTACAGACTGGTTCG 59.567 40.741 7.51 7.35 36.17 3.95
290 323 4.602340 ACAGAATTACAGACTGGTTCGT 57.398 40.909 7.51 7.86 36.17 3.85
291 324 4.957296 ACAGAATTACAGACTGGTTCGTT 58.043 39.130 7.51 0.00 36.17 3.85
292 325 4.989168 ACAGAATTACAGACTGGTTCGTTC 59.011 41.667 7.51 4.21 36.17 3.95
293 326 4.988540 CAGAATTACAGACTGGTTCGTTCA 59.011 41.667 7.51 0.00 0.00 3.18
296 329 1.120530 ACAGACTGGTTCGTTCAGGT 58.879 50.000 7.51 0.00 36.62 4.00
297 330 1.485066 ACAGACTGGTTCGTTCAGGTT 59.515 47.619 7.51 0.00 36.62 3.50
298 331 2.135933 CAGACTGGTTCGTTCAGGTTC 58.864 52.381 0.00 0.00 36.62 3.62
299 332 1.137513 GACTGGTTCGTTCAGGTTCG 58.862 55.000 0.00 0.00 36.62 3.95
300 333 0.249741 ACTGGTTCGTTCAGGTTCGG 60.250 55.000 0.00 0.00 36.62 4.30
301 334 0.032952 CTGGTTCGTTCAGGTTCGGA 59.967 55.000 0.00 0.00 0.00 4.55
302 335 0.032952 TGGTTCGTTCAGGTTCGGAG 59.967 55.000 0.00 0.00 0.00 4.63
303 336 0.033090 GGTTCGTTCAGGTTCGGAGT 59.967 55.000 0.00 0.00 0.00 3.85
304 337 1.539712 GGTTCGTTCAGGTTCGGAGTT 60.540 52.381 0.00 0.00 0.00 3.01
305 338 1.525619 GTTCGTTCAGGTTCGGAGTTG 59.474 52.381 0.00 0.00 0.00 3.16
306 339 0.032952 TCGTTCAGGTTCGGAGTTGG 59.967 55.000 0.00 0.00 0.00 3.77
307 340 0.032952 CGTTCAGGTTCGGAGTTGGA 59.967 55.000 0.00 0.00 0.00 3.53
308 341 1.797025 GTTCAGGTTCGGAGTTGGAG 58.203 55.000 0.00 0.00 0.00 3.86
309 342 1.343465 GTTCAGGTTCGGAGTTGGAGA 59.657 52.381 0.00 0.00 0.00 3.71
310 343 0.966920 TCAGGTTCGGAGTTGGAGAC 59.033 55.000 0.00 0.00 0.00 3.36
311 344 0.679505 CAGGTTCGGAGTTGGAGACA 59.320 55.000 0.00 0.00 39.83 3.41
330 363 8.762645 TGGAGACAATCAGATTTATACAAGAGT 58.237 33.333 0.00 0.00 37.44 3.24
331 364 9.255304 GGAGACAATCAGATTTATACAAGAGTC 57.745 37.037 0.00 0.00 0.00 3.36
332 365 9.809096 GAGACAATCAGATTTATACAAGAGTCA 57.191 33.333 0.00 0.00 0.00 3.41
340 373 9.429359 CAGATTTATACAAGAGTCACTTCAGTT 57.571 33.333 0.00 0.00 36.61 3.16
349 382 5.300752 AGAGTCACTTCAGTTGTGGTTATG 58.699 41.667 0.00 0.00 36.21 1.90
358 391 8.989131 ACTTCAGTTGTGGTTATGGTACTATAT 58.011 33.333 0.00 0.00 0.00 0.86
359 392 9.261180 CTTCAGTTGTGGTTATGGTACTATATG 57.739 37.037 0.00 0.00 0.00 1.78
361 394 9.423964 TCAGTTGTGGTTATGGTACTATATGTA 57.576 33.333 0.00 0.00 0.00 2.29
398 431 8.664669 AAACTAGGTCAATCCCATTTGTATTT 57.335 30.769 0.00 0.00 36.75 1.40
403 436 6.542370 AGGTCAATCCCATTTGTATTTCTACG 59.458 38.462 0.00 0.00 36.75 3.51
404 437 6.238648 GGTCAATCCCATTTGTATTTCTACGG 60.239 42.308 0.00 0.00 0.00 4.02
405 438 6.317893 GTCAATCCCATTTGTATTTCTACGGT 59.682 38.462 0.00 0.00 0.00 4.83
406 439 6.317642 TCAATCCCATTTGTATTTCTACGGTG 59.682 38.462 0.00 0.00 0.00 4.94
407 440 5.168647 TCCCATTTGTATTTCTACGGTGT 57.831 39.130 0.00 0.00 0.00 4.16
408 441 6.297080 TCCCATTTGTATTTCTACGGTGTA 57.703 37.500 0.00 0.00 0.00 2.90
409 442 6.108015 TCCCATTTGTATTTCTACGGTGTAC 58.892 40.000 0.00 0.00 0.00 2.90
414 461 8.879759 CATTTGTATTTCTACGGTGTACTTCAT 58.120 33.333 0.00 0.00 0.00 2.57
420 467 2.922740 ACGGTGTACTTCATTGTGGT 57.077 45.000 0.00 0.00 0.00 4.16
428 475 3.629142 ACTTCATTGTGGTACTAGCCC 57.371 47.619 0.00 0.00 0.00 5.19
431 478 1.209504 TCATTGTGGTACTAGCCCAGC 59.790 52.381 2.04 0.00 31.13 4.85
444 491 1.233285 GCCCAGCACAGTGAGAACTG 61.233 60.000 4.15 4.36 43.03 3.16
541 588 7.576236 TCTTTCTTATCTTTTGCAGAGAAACG 58.424 34.615 6.03 0.00 32.18 3.60
549 832 7.549928 ATCTTTTGCAGAGAAACGTACCTACG 61.550 42.308 6.03 3.30 44.55 3.51
566 849 1.076533 ACGTTCGTGGCGAGCAATAG 61.077 55.000 6.24 0.00 36.94 1.73
572 855 1.571919 GTGGCGAGCAATAGTAGTGG 58.428 55.000 0.00 0.00 0.00 4.00
594 877 1.597663 GTCTTTCCTTGTGTGGTCACG 59.402 52.381 0.00 0.00 46.49 4.35
645 960 1.132643 CATCCTTCTCAGCAGCAAAGC 59.867 52.381 0.00 0.00 0.00 3.51
656 971 0.234106 CAGCAAAGCGACAGACACAG 59.766 55.000 0.00 0.00 0.00 3.66
660 975 2.473816 CAAAGCGACAGACACAGAGAA 58.526 47.619 0.00 0.00 0.00 2.87
664 979 1.263776 CGACAGACACAGAGAATCGC 58.736 55.000 0.00 0.00 42.67 4.58
667 982 3.430931 GACAGACACAGAGAATCGCTAC 58.569 50.000 0.00 0.00 42.67 3.58
687 1002 5.351740 GCTACGGCACTAGAAAAAGAAGAAT 59.648 40.000 0.00 0.00 38.54 2.40
688 1003 5.613358 ACGGCACTAGAAAAAGAAGAATG 57.387 39.130 0.00 0.00 0.00 2.67
710 1025 6.654793 TGTTTTATTTTCTTTGTGCCACAC 57.345 33.333 0.00 0.00 34.56 3.82
786 1101 2.028385 ACCACTCCGTCAATCCACTTAC 60.028 50.000 0.00 0.00 0.00 2.34
856 1179 2.234908 CTCCTAGTACACTGCTGCCTTT 59.765 50.000 0.00 0.00 0.00 3.11
870 1193 3.712187 CTGCCTTTCCTCTTCGATCTAC 58.288 50.000 0.00 0.00 0.00 2.59
871 1194 3.366396 TGCCTTTCCTCTTCGATCTACT 58.634 45.455 0.00 0.00 0.00 2.57
873 1196 4.954202 TGCCTTTCCTCTTCGATCTACTTA 59.046 41.667 0.00 0.00 0.00 2.24
874 1197 5.598830 TGCCTTTCCTCTTCGATCTACTTAT 59.401 40.000 0.00 0.00 0.00 1.73
875 1198 5.923684 GCCTTTCCTCTTCGATCTACTTATG 59.076 44.000 0.00 0.00 0.00 1.90
876 1199 6.461788 GCCTTTCCTCTTCGATCTACTTATGT 60.462 42.308 0.00 0.00 0.00 2.29
877 1200 7.255520 GCCTTTCCTCTTCGATCTACTTATGTA 60.256 40.741 0.00 0.00 0.00 2.29
878 1201 8.798402 CCTTTCCTCTTCGATCTACTTATGTAT 58.202 37.037 0.00 0.00 0.00 2.29
913 1236 1.891919 GAGGTTGTTGGCGAGCACA 60.892 57.895 0.00 0.00 0.00 4.57
934 1257 0.611062 ACTCCTCACCCATCGTTCGA 60.611 55.000 0.00 0.00 0.00 3.71
1259 1596 2.744202 TCGACTTCCTCGGTACTTACAC 59.256 50.000 0.00 0.00 43.16 2.90
1356 1730 0.877213 AAACGTACGTGGCACTCACC 60.877 55.000 23.57 0.00 43.23 4.02
1399 1774 1.569030 ATGCAGCTCAGGACATGGGT 61.569 55.000 0.00 0.00 0.00 4.51
1417 1792 2.264794 CTCCCGTTCCTCAACCCG 59.735 66.667 0.00 0.00 0.00 5.28
1644 2043 4.814147 TCACTACTTTCTCTCAGTGCATG 58.186 43.478 0.00 0.00 38.60 4.06
1777 2200 3.391049 GACTACAACTTCGCCTTGTTCT 58.609 45.455 0.00 0.00 33.79 3.01
1784 2207 3.600388 ACTTCGCCTTGTTCTGGAATAG 58.400 45.455 0.00 0.00 0.00 1.73
1816 2239 2.507471 GAGGTGGAGAAACTCATCCCAT 59.493 50.000 0.00 0.00 34.47 4.00
1848 2271 1.024046 CCATCATCGACGCCACCAAA 61.024 55.000 0.00 0.00 0.00 3.28
2078 2529 0.543174 AGGACCTCAACCTCTTCGCT 60.543 55.000 0.00 0.00 31.43 4.93
2239 2690 1.066858 AGAGCATCACGATTGAACCGT 60.067 47.619 0.00 0.00 41.36 4.83
2536 2992 5.393962 GGCAGACATGATAAACTGTTTGAC 58.606 41.667 15.69 9.64 31.13 3.18
2561 3017 3.203710 TCCCCTAGACTAGACGATGGAAA 59.796 47.826 11.27 0.00 0.00 3.13
2562 3018 3.570550 CCCCTAGACTAGACGATGGAAAG 59.429 52.174 11.27 0.00 0.00 2.62
2564 3020 3.004944 CCTAGACTAGACGATGGAAAGCC 59.995 52.174 11.27 0.00 0.00 4.35
2565 3021 2.741145 AGACTAGACGATGGAAAGCCT 58.259 47.619 0.00 0.00 34.31 4.58
2566 3022 2.691011 AGACTAGACGATGGAAAGCCTC 59.309 50.000 0.00 0.00 34.31 4.70
2567 3023 2.427453 GACTAGACGATGGAAAGCCTCA 59.573 50.000 0.00 0.00 34.31 3.86
2568 3024 3.034635 ACTAGACGATGGAAAGCCTCAT 58.965 45.455 0.00 0.00 34.31 2.90
2569 3025 2.611225 AGACGATGGAAAGCCTCATC 57.389 50.000 0.00 0.00 37.12 2.92
2572 3028 3.085208 GATGGAAAGCCTCATCGCA 57.915 52.632 0.00 0.00 31.83 5.10
2573 3029 1.382522 GATGGAAAGCCTCATCGCAA 58.617 50.000 0.00 0.00 31.83 4.85
2574 3030 1.064654 GATGGAAAGCCTCATCGCAAC 59.935 52.381 0.00 0.00 31.83 4.17
2575 3031 1.298157 TGGAAAGCCTCATCGCAACG 61.298 55.000 0.00 0.00 34.31 4.10
2576 3032 1.425428 GAAAGCCTCATCGCAACGG 59.575 57.895 0.00 0.00 0.00 4.44
2577 3033 1.003839 AAAGCCTCATCGCAACGGA 60.004 52.632 0.00 0.00 0.00 4.69
2578 3034 1.298859 AAAGCCTCATCGCAACGGAC 61.299 55.000 0.00 0.00 0.00 4.79
2579 3035 3.554692 GCCTCATCGCAACGGACG 61.555 66.667 0.00 0.00 0.00 4.79
2580 3036 2.180769 CCTCATCGCAACGGACGA 59.819 61.111 0.00 0.00 44.75 4.20
2585 3041 2.048597 TCGCAACGGACGATGCTT 60.049 55.556 21.35 0.00 40.95 3.91
2586 3042 2.092291 TCGCAACGGACGATGCTTC 61.092 57.895 21.35 0.00 40.95 3.86
2595 3051 4.513519 CGATGCTTCGGTGCCTTA 57.486 55.556 13.82 0.00 41.74 2.69
2596 3052 2.762360 CGATGCTTCGGTGCCTTAA 58.238 52.632 13.82 0.00 41.74 1.85
2597 3053 0.652592 CGATGCTTCGGTGCCTTAAG 59.347 55.000 13.82 0.00 41.74 1.85
2598 3054 1.017387 GATGCTTCGGTGCCTTAAGG 58.983 55.000 17.81 17.81 38.53 2.69
2638 3094 9.770097 ATCTATAATAACATGTGGACTCAACAG 57.230 33.333 0.00 0.00 0.00 3.16
2639 3095 8.204160 TCTATAATAACATGTGGACTCAACAGG 58.796 37.037 0.00 0.00 0.00 4.00
2640 3096 4.640771 ATAACATGTGGACTCAACAGGT 57.359 40.909 0.00 0.00 0.00 4.00
2641 3097 2.260844 ACATGTGGACTCAACAGGTG 57.739 50.000 2.99 0.00 0.00 4.00
2642 3098 1.202806 ACATGTGGACTCAACAGGTGG 60.203 52.381 2.99 0.00 0.00 4.61
2643 3099 0.250901 ATGTGGACTCAACAGGTGGC 60.251 55.000 0.00 0.00 0.00 5.01
2644 3100 1.344953 TGTGGACTCAACAGGTGGCT 61.345 55.000 0.00 0.00 0.00 4.75
2645 3101 0.886490 GTGGACTCAACAGGTGGCTG 60.886 60.000 0.00 0.00 0.00 4.85
2646 3102 1.302832 GGACTCAACAGGTGGCTGG 60.303 63.158 0.00 0.00 0.00 4.85
2647 3103 1.451936 GACTCAACAGGTGGCTGGT 59.548 57.895 0.00 0.00 0.00 4.00
2648 3104 0.603975 GACTCAACAGGTGGCTGGTC 60.604 60.000 0.00 0.00 0.00 4.02
2649 3105 1.302832 CTCAACAGGTGGCTGGTCC 60.303 63.158 0.00 0.00 0.00 4.46
2650 3106 2.055689 CTCAACAGGTGGCTGGTCCA 62.056 60.000 0.00 0.00 44.18 4.02
2657 3113 3.573673 TGGCTGGTCCACATGTCA 58.426 55.556 0.00 0.00 40.72 3.58
2658 3114 1.376086 TGGCTGGTCCACATGTCAG 59.624 57.895 7.70 7.70 40.72 3.51
2659 3115 1.376466 GGCTGGTCCACATGTCAGT 59.624 57.895 12.37 0.00 34.01 3.41
2660 3116 0.957395 GGCTGGTCCACATGTCAGTG 60.957 60.000 12.37 0.00 39.21 3.66
2661 3117 0.035317 GCTGGTCCACATGTCAGTGA 59.965 55.000 12.37 0.00 42.05 3.41
2662 3118 1.800805 CTGGTCCACATGTCAGTGAC 58.199 55.000 16.68 16.68 42.05 3.67
2663 3119 0.396435 TGGTCCACATGTCAGTGACC 59.604 55.000 20.43 19.32 42.05 4.02
2664 3120 0.321653 GGTCCACATGTCAGTGACCC 60.322 60.000 20.43 8.61 42.05 4.46
2665 3121 0.396435 GTCCACATGTCAGTGACCCA 59.604 55.000 20.43 3.20 42.05 4.51
2666 3122 1.135960 TCCACATGTCAGTGACCCAA 58.864 50.000 20.43 2.34 42.05 4.12
2667 3123 1.492599 TCCACATGTCAGTGACCCAAA 59.507 47.619 20.43 1.95 42.05 3.28
2668 3124 1.881973 CCACATGTCAGTGACCCAAAG 59.118 52.381 20.43 8.14 42.05 2.77
2669 3125 2.487086 CCACATGTCAGTGACCCAAAGA 60.487 50.000 20.43 0.78 42.05 2.52
2670 3126 2.549754 CACATGTCAGTGACCCAAAGAC 59.450 50.000 20.43 0.00 42.05 3.01
2671 3127 2.172505 ACATGTCAGTGACCCAAAGACA 59.827 45.455 20.43 0.00 42.62 3.41
2672 3128 2.620251 TGTCAGTGACCCAAAGACAG 57.380 50.000 20.43 0.00 34.59 3.51
2673 3129 1.140852 TGTCAGTGACCCAAAGACAGG 59.859 52.381 20.43 0.00 34.59 4.00
2674 3130 1.141053 GTCAGTGACCCAAAGACAGGT 59.859 52.381 12.54 0.00 39.75 4.00
2675 3131 1.140852 TCAGTGACCCAAAGACAGGTG 59.859 52.381 0.00 0.00 36.17 4.00
2676 3132 0.179018 AGTGACCCAAAGACAGGTGC 60.179 55.000 0.00 0.00 36.17 5.01
2677 3133 0.465460 GTGACCCAAAGACAGGTGCA 60.465 55.000 0.00 0.00 36.17 4.57
2678 3134 0.478072 TGACCCAAAGACAGGTGCAT 59.522 50.000 0.00 0.00 36.17 3.96
2679 3135 1.133513 TGACCCAAAGACAGGTGCATT 60.134 47.619 0.00 0.00 36.17 3.56
2680 3136 1.541588 GACCCAAAGACAGGTGCATTC 59.458 52.381 0.00 0.00 36.17 2.67
2681 3137 0.890683 CCCAAAGACAGGTGCATTCC 59.109 55.000 0.00 0.00 0.00 3.01
2685 3141 0.773644 AAGACAGGTGCATTCCCACT 59.226 50.000 0.00 0.00 36.03 4.00
2704 3160 1.677576 CTGCAACAGTTTGAGCCTTCA 59.322 47.619 0.00 0.00 34.24 3.02
2750 3216 2.868583 CCATATGCTACATATGCGCTCC 59.131 50.000 18.08 0.00 32.22 4.70
2789 3257 7.432838 CAGATTAAACTACTCCGAGCTAAAGTC 59.567 40.741 0.00 0.00 0.00 3.01
2804 3272 7.510549 AGCTAAAGTCAAAGTAAAGATGCAA 57.489 32.000 0.00 0.00 0.00 4.08
2888 3357 5.699839 AGAGGATTTTACGTGTTGATTTGC 58.300 37.500 0.00 0.00 0.00 3.68
2974 3443 6.665680 ACTATCACAGTAATCCACTTCTGAGT 59.334 38.462 0.00 0.00 34.98 3.41
2994 3463 1.593787 CAGACTCATCTGCACCCGT 59.406 57.895 0.00 0.00 45.83 5.28
3001 3470 0.950836 CATCTGCACCCGTGTTGAAA 59.049 50.000 0.00 0.00 0.00 2.69
3066 3537 8.356657 TCAATATTTTTGCGGGGTAGATTATTG 58.643 33.333 0.00 0.00 0.00 1.90
3080 3551 1.934589 TTATTGGATGCGTGAGGTCG 58.065 50.000 0.00 0.00 0.00 4.79
3118 3589 2.574006 TTTGGACATCTGAGCAGCTT 57.426 45.000 0.00 0.00 0.00 3.74
3120 3591 2.574006 TGGACATCTGAGCAGCTTTT 57.426 45.000 0.00 0.00 0.00 2.27
3177 3649 6.047511 AGTTTACTGTTCATGCTCTGATCT 57.952 37.500 0.00 0.00 32.72 2.75
3183 3655 7.934855 ACTGTTCATGCTCTGATCTAAATTT 57.065 32.000 0.00 0.00 32.72 1.82
3184 3656 7.983307 ACTGTTCATGCTCTGATCTAAATTTC 58.017 34.615 0.00 0.00 32.72 2.17
3243 3715 8.301720 CAAATGATCTGAAAATTGAAGAGGACA 58.698 33.333 0.00 0.00 0.00 4.02
3245 3717 8.591114 ATGATCTGAAAATTGAAGAGGACATT 57.409 30.769 0.00 0.00 0.00 2.71
3319 3793 3.697166 TGTGACTAGGTGCAGATGACTA 58.303 45.455 0.00 0.00 0.00 2.59
3335 3809 1.801178 GACTAGGCACTGAAACACTGC 59.199 52.381 0.00 0.00 41.52 4.40
3340 3814 0.041839 GCACTGAAACACTGCACTCG 60.042 55.000 0.00 0.00 0.00 4.18
3341 3815 1.290203 CACTGAAACACTGCACTCGT 58.710 50.000 0.00 0.00 0.00 4.18
3342 3816 2.469826 CACTGAAACACTGCACTCGTA 58.530 47.619 0.00 0.00 0.00 3.43
3343 3817 2.218759 CACTGAAACACTGCACTCGTAC 59.781 50.000 0.00 0.00 0.00 3.67
3344 3818 2.100916 ACTGAAACACTGCACTCGTACT 59.899 45.455 0.00 0.00 0.00 2.73
3345 3819 3.317149 ACTGAAACACTGCACTCGTACTA 59.683 43.478 0.00 0.00 0.00 1.82
3346 3820 4.022242 ACTGAAACACTGCACTCGTACTAT 60.022 41.667 0.00 0.00 0.00 2.12
3347 3821 4.482386 TGAAACACTGCACTCGTACTATC 58.518 43.478 0.00 0.00 0.00 2.08
3359 3835 4.211584 ACTCGTACTATCACTATCACGCTG 59.788 45.833 0.00 0.00 0.00 5.18
3366 3842 3.699779 TCACTATCACGCTGTCATCTC 57.300 47.619 0.00 0.00 0.00 2.75
3373 3849 3.838271 GCTGTCATCTCGGCCGGA 61.838 66.667 27.83 21.61 34.02 5.14
3374 3850 2.892640 CTGTCATCTCGGCCGGAA 59.107 61.111 27.83 14.55 0.00 4.30
3375 3851 1.227089 CTGTCATCTCGGCCGGAAG 60.227 63.158 27.83 17.05 0.00 3.46
3376 3852 2.586357 GTCATCTCGGCCGGAAGC 60.586 66.667 27.83 11.56 42.60 3.86
3385 3861 4.785453 GCCGGAAGCCTCCAGTGG 62.785 72.222 5.05 1.40 42.58 4.00
3392 3868 4.373116 GCCTCCAGTGGCGTTCGA 62.373 66.667 3.51 0.00 43.74 3.71
3393 3869 2.579201 CCTCCAGTGGCGTTCGAT 59.421 61.111 3.51 0.00 0.00 3.59
3394 3870 1.519455 CCTCCAGTGGCGTTCGATC 60.519 63.158 3.51 0.00 0.00 3.69
3395 3871 1.215382 CTCCAGTGGCGTTCGATCA 59.785 57.895 3.51 0.00 0.00 2.92
3396 3872 1.078759 CTCCAGTGGCGTTCGATCAC 61.079 60.000 3.51 4.03 0.00 3.06
3397 3873 1.079819 CCAGTGGCGTTCGATCACT 60.080 57.895 0.00 12.78 41.81 3.41
3398 3874 1.078759 CCAGTGGCGTTCGATCACTC 61.079 60.000 14.62 0.00 39.43 3.51
3399 3875 1.154016 AGTGGCGTTCGATCACTCG 60.154 57.895 12.78 0.00 46.41 4.18
3400 3876 1.443872 GTGGCGTTCGATCACTCGT 60.444 57.895 0.00 0.00 45.25 4.18
3401 3877 0.179181 GTGGCGTTCGATCACTCGTA 60.179 55.000 0.00 0.00 45.25 3.43
3402 3878 0.179181 TGGCGTTCGATCACTCGTAC 60.179 55.000 0.00 0.00 45.25 3.67
3403 3879 0.098376 GGCGTTCGATCACTCGTACT 59.902 55.000 0.00 0.00 45.25 2.73
3404 3880 1.328680 GGCGTTCGATCACTCGTACTA 59.671 52.381 0.00 0.00 45.25 1.82
3405 3881 2.032204 GGCGTTCGATCACTCGTACTAT 60.032 50.000 0.00 0.00 45.25 2.12
3406 3882 3.216819 GCGTTCGATCACTCGTACTATC 58.783 50.000 0.00 0.00 45.25 2.08
3407 3883 3.302935 GCGTTCGATCACTCGTACTATCA 60.303 47.826 0.00 0.00 45.25 2.15
3408 3884 4.202326 CGTTCGATCACTCGTACTATCAC 58.798 47.826 0.00 0.00 45.25 3.06
3409 3885 4.025896 CGTTCGATCACTCGTACTATCACT 60.026 45.833 0.00 0.00 45.25 3.41
3410 3886 5.174579 CGTTCGATCACTCGTACTATCACTA 59.825 44.000 0.00 0.00 45.25 2.74
3411 3887 6.128876 CGTTCGATCACTCGTACTATCACTAT 60.129 42.308 0.00 0.00 45.25 2.12
3412 3888 6.947903 TCGATCACTCGTACTATCACTATC 57.052 41.667 0.00 0.00 45.25 2.08
3413 3889 6.453092 TCGATCACTCGTACTATCACTATCA 58.547 40.000 0.00 0.00 45.25 2.15
3414 3890 6.365518 TCGATCACTCGTACTATCACTATCAC 59.634 42.308 0.00 0.00 45.25 3.06
3415 3891 5.902051 TCACTCGTACTATCACTATCACG 57.098 43.478 0.00 0.00 0.00 4.35
3416 3892 4.210746 TCACTCGTACTATCACTATCACGC 59.789 45.833 0.00 0.00 0.00 5.34
3417 3893 4.211584 CACTCGTACTATCACTATCACGCT 59.788 45.833 0.00 0.00 0.00 5.07
3418 3894 4.211584 ACTCGTACTATCACTATCACGCTG 59.788 45.833 0.00 0.00 0.00 5.18
3419 3895 4.124970 TCGTACTATCACTATCACGCTGT 58.875 43.478 0.00 0.00 0.00 4.40
3420 3896 4.210746 TCGTACTATCACTATCACGCTGTC 59.789 45.833 0.00 0.00 0.00 3.51
3421 3897 4.025145 CGTACTATCACTATCACGCTGTCA 60.025 45.833 0.00 0.00 0.00 3.58
3422 3898 5.334182 CGTACTATCACTATCACGCTGTCAT 60.334 44.000 0.00 0.00 0.00 3.06
3423 3899 5.114785 ACTATCACTATCACGCTGTCATC 57.885 43.478 0.00 0.00 0.00 2.92
3424 3900 4.824537 ACTATCACTATCACGCTGTCATCT 59.175 41.667 0.00 0.00 0.00 2.90
3425 3901 3.699779 TCACTATCACGCTGTCATCTC 57.300 47.619 0.00 0.00 0.00 2.75
3426 3902 2.032178 TCACTATCACGCTGTCATCTCG 59.968 50.000 0.00 0.00 0.00 4.04
3427 3903 1.335182 ACTATCACGCTGTCATCTCGG 59.665 52.381 0.00 0.00 0.00 4.63
3428 3904 0.030773 TATCACGCTGTCATCTCGGC 59.969 55.000 0.00 0.00 36.47 5.54
3429 3905 1.670949 ATCACGCTGTCATCTCGGCT 61.671 55.000 0.00 0.00 37.54 5.52
3457 3933 1.811266 CAGTGGCGTTCGATCCCTG 60.811 63.158 0.00 0.00 0.00 4.45
3458 3934 1.982395 AGTGGCGTTCGATCCCTGA 60.982 57.895 0.00 0.00 0.00 3.86
3459 3935 1.519455 GTGGCGTTCGATCCCTGAG 60.519 63.158 0.00 0.00 0.00 3.35
3460 3936 1.680989 TGGCGTTCGATCCCTGAGA 60.681 57.895 0.00 0.00 0.00 3.27
3461 3937 1.066587 GGCGTTCGATCCCTGAGAG 59.933 63.158 0.00 0.00 0.00 3.20
3462 3938 1.590259 GCGTTCGATCCCTGAGAGC 60.590 63.158 0.00 0.00 0.00 4.09
3463 3939 1.809869 CGTTCGATCCCTGAGAGCA 59.190 57.895 0.00 0.00 0.00 4.26
3464 3940 0.526524 CGTTCGATCCCTGAGAGCAC 60.527 60.000 0.00 0.00 0.00 4.40
3465 3941 0.526524 GTTCGATCCCTGAGAGCACG 60.527 60.000 0.00 0.00 0.00 5.34
3466 3942 1.667154 TTCGATCCCTGAGAGCACGG 61.667 60.000 0.00 0.00 0.00 4.94
3467 3943 2.818132 GATCCCTGAGAGCACGGG 59.182 66.667 0.00 0.00 39.41 5.28
3472 3948 4.020617 CTGAGAGCACGGGGGCAA 62.021 66.667 0.00 0.00 35.83 4.52
3473 3949 3.551496 CTGAGAGCACGGGGGCAAA 62.551 63.158 0.00 0.00 35.83 3.68
3474 3950 2.044946 GAGAGCACGGGGGCAAAT 60.045 61.111 0.00 0.00 35.83 2.32
3475 3951 2.044946 AGAGCACGGGGGCAAATC 60.045 61.111 0.00 0.00 35.83 2.17
3476 3952 2.044946 GAGCACGGGGGCAAATCT 60.045 61.111 0.00 0.00 35.83 2.40
3477 3953 1.678970 GAGCACGGGGGCAAATCTT 60.679 57.895 0.00 0.00 35.83 2.40
3478 3954 0.393808 GAGCACGGGGGCAAATCTTA 60.394 55.000 0.00 0.00 35.83 2.10
3479 3955 0.679960 AGCACGGGGGCAAATCTTAC 60.680 55.000 0.00 0.00 35.83 2.34
3480 3956 0.963355 GCACGGGGGCAAATCTTACA 60.963 55.000 0.00 0.00 0.00 2.41
3481 3957 1.540267 CACGGGGGCAAATCTTACAA 58.460 50.000 0.00 0.00 0.00 2.41
3482 3958 1.472480 CACGGGGGCAAATCTTACAAG 59.528 52.381 0.00 0.00 0.00 3.16
3483 3959 1.353022 ACGGGGGCAAATCTTACAAGA 59.647 47.619 0.00 0.00 39.78 3.02
3484 3960 2.224917 ACGGGGGCAAATCTTACAAGAA 60.225 45.455 0.00 0.00 38.77 2.52
3485 3961 2.823154 CGGGGGCAAATCTTACAAGAAA 59.177 45.455 0.00 0.00 38.77 2.52
3486 3962 3.257127 CGGGGGCAAATCTTACAAGAAAA 59.743 43.478 0.00 0.00 38.77 2.29
3487 3963 4.262249 CGGGGGCAAATCTTACAAGAAAAA 60.262 41.667 0.00 0.00 38.77 1.94
3505 3981 4.823790 AAAAACTACGGGCAAACTACAG 57.176 40.909 0.00 0.00 0.00 2.74
3506 3982 1.804601 AACTACGGGCAAACTACAGC 58.195 50.000 0.00 0.00 0.00 4.40
3507 3983 0.974383 ACTACGGGCAAACTACAGCT 59.026 50.000 0.00 0.00 0.00 4.24
3508 3984 2.173519 ACTACGGGCAAACTACAGCTA 58.826 47.619 0.00 0.00 0.00 3.32
3509 3985 2.564062 ACTACGGGCAAACTACAGCTAA 59.436 45.455 0.00 0.00 0.00 3.09
3510 3986 2.094762 ACGGGCAAACTACAGCTAAG 57.905 50.000 0.00 0.00 0.00 2.18
3511 3987 1.621814 ACGGGCAAACTACAGCTAAGA 59.378 47.619 2.40 0.00 0.00 2.10
3512 3988 2.236395 ACGGGCAAACTACAGCTAAGAT 59.764 45.455 2.40 0.00 0.00 2.40
3513 3989 3.270877 CGGGCAAACTACAGCTAAGATT 58.729 45.455 2.40 0.00 0.00 2.40
3514 3990 3.689649 CGGGCAAACTACAGCTAAGATTT 59.310 43.478 2.40 0.00 0.00 2.17
3515 3991 4.873827 CGGGCAAACTACAGCTAAGATTTA 59.126 41.667 2.40 0.00 0.00 1.40
3516 3992 5.353123 CGGGCAAACTACAGCTAAGATTTAA 59.647 40.000 2.40 0.00 0.00 1.52
3517 3993 6.552629 GGGCAAACTACAGCTAAGATTTAAC 58.447 40.000 2.40 0.00 0.00 2.01
3518 3994 6.150474 GGGCAAACTACAGCTAAGATTTAACA 59.850 38.462 2.40 0.00 0.00 2.41
3519 3995 7.244192 GGCAAACTACAGCTAAGATTTAACAG 58.756 38.462 2.40 0.00 0.00 3.16
3520 3996 6.743172 GCAAACTACAGCTAAGATTTAACAGC 59.257 38.462 2.40 0.00 0.00 4.40
3521 3997 6.986904 AACTACAGCTAAGATTTAACAGCC 57.013 37.500 2.40 0.00 34.49 4.85
3522 3998 6.301169 ACTACAGCTAAGATTTAACAGCCT 57.699 37.500 2.40 0.00 34.49 4.58
3523 3999 6.712276 ACTACAGCTAAGATTTAACAGCCTT 58.288 36.000 2.40 0.00 34.49 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.678260 AGATCAGCAACATTCTAAATTTCTACT 57.322 29.630 0.00 0.00 0.00 2.57
62 63 8.327941 TGGAACAAATTCTACTTCATCAGAAG 57.672 34.615 3.83 3.83 44.07 2.85
119 150 1.074889 TCCCCCTCTTGCCAACTTTAC 59.925 52.381 0.00 0.00 0.00 2.01
142 173 1.069090 GATATCGGCCGGAGTGCAA 59.931 57.895 27.83 3.54 0.00 4.08
156 187 2.743183 GCACGAGCAAAGTGGAGGATAT 60.743 50.000 0.00 0.00 41.58 1.63
157 188 1.405526 GCACGAGCAAAGTGGAGGATA 60.406 52.381 0.00 0.00 41.58 2.59
158 189 0.674895 GCACGAGCAAAGTGGAGGAT 60.675 55.000 0.00 0.00 41.58 3.24
219 252 3.966154 ACAAGGATCGAGCATTAGTACG 58.034 45.455 0.00 0.00 0.00 3.67
253 286 1.757118 TCTGTATAGTGCACTCCTGCC 59.243 52.381 25.56 8.70 43.51 4.85
268 301 5.717078 ACGAACCAGTCTGTAATTCTGTA 57.283 39.130 0.00 0.00 0.00 2.74
269 302 4.602340 ACGAACCAGTCTGTAATTCTGT 57.398 40.909 0.00 1.28 0.00 3.41
270 303 4.988540 TGAACGAACCAGTCTGTAATTCTG 59.011 41.667 0.00 0.00 0.00 3.02
271 304 5.209818 TGAACGAACCAGTCTGTAATTCT 57.790 39.130 0.00 0.00 0.00 2.40
272 305 4.389077 CCTGAACGAACCAGTCTGTAATTC 59.611 45.833 0.00 0.00 0.00 2.17
273 306 4.202326 ACCTGAACGAACCAGTCTGTAATT 60.202 41.667 0.00 0.00 0.00 1.40
274 307 3.323979 ACCTGAACGAACCAGTCTGTAAT 59.676 43.478 0.00 0.00 0.00 1.89
275 308 2.696707 ACCTGAACGAACCAGTCTGTAA 59.303 45.455 0.00 0.00 0.00 2.41
278 311 2.135933 GAACCTGAACGAACCAGTCTG 58.864 52.381 0.00 0.00 0.00 3.51
279 312 1.269621 CGAACCTGAACGAACCAGTCT 60.270 52.381 0.00 0.00 0.00 3.24
280 313 1.137513 CGAACCTGAACGAACCAGTC 58.862 55.000 0.00 0.00 0.00 3.51
281 314 0.249741 CCGAACCTGAACGAACCAGT 60.250 55.000 0.00 0.00 0.00 4.00
282 315 0.032952 TCCGAACCTGAACGAACCAG 59.967 55.000 0.00 0.00 0.00 4.00
283 316 0.032952 CTCCGAACCTGAACGAACCA 59.967 55.000 0.00 0.00 0.00 3.67
284 317 0.033090 ACTCCGAACCTGAACGAACC 59.967 55.000 0.00 0.00 0.00 3.62
288 321 0.032952 TCCAACTCCGAACCTGAACG 59.967 55.000 0.00 0.00 0.00 3.95
289 322 1.343465 TCTCCAACTCCGAACCTGAAC 59.657 52.381 0.00 0.00 0.00 3.18
290 323 1.343465 GTCTCCAACTCCGAACCTGAA 59.657 52.381 0.00 0.00 0.00 3.02
291 324 0.966920 GTCTCCAACTCCGAACCTGA 59.033 55.000 0.00 0.00 0.00 3.86
292 325 0.679505 TGTCTCCAACTCCGAACCTG 59.320 55.000 0.00 0.00 0.00 4.00
293 326 1.420430 TTGTCTCCAACTCCGAACCT 58.580 50.000 0.00 0.00 0.00 3.50
296 329 2.897326 TCTGATTGTCTCCAACTCCGAA 59.103 45.455 0.00 0.00 32.26 4.30
297 330 2.525368 TCTGATTGTCTCCAACTCCGA 58.475 47.619 0.00 0.00 32.26 4.55
298 331 3.533606 ATCTGATTGTCTCCAACTCCG 57.466 47.619 0.00 0.00 32.26 4.63
299 332 7.987458 TGTATAAATCTGATTGTCTCCAACTCC 59.013 37.037 3.22 0.00 32.26 3.85
300 333 8.948631 TGTATAAATCTGATTGTCTCCAACTC 57.051 34.615 3.22 0.00 32.26 3.01
301 334 9.388506 CTTGTATAAATCTGATTGTCTCCAACT 57.611 33.333 3.22 0.00 32.26 3.16
302 335 9.383519 TCTTGTATAAATCTGATTGTCTCCAAC 57.616 33.333 3.22 0.00 32.26 3.77
303 336 9.605275 CTCTTGTATAAATCTGATTGTCTCCAA 57.395 33.333 3.22 3.77 34.45 3.53
304 337 8.762645 ACTCTTGTATAAATCTGATTGTCTCCA 58.237 33.333 3.22 0.00 0.00 3.86
305 338 9.255304 GACTCTTGTATAAATCTGATTGTCTCC 57.745 37.037 3.22 0.00 0.00 3.71
306 339 9.809096 TGACTCTTGTATAAATCTGATTGTCTC 57.191 33.333 3.22 0.00 0.00 3.36
307 340 9.593134 GTGACTCTTGTATAAATCTGATTGTCT 57.407 33.333 3.22 0.00 0.00 3.41
308 341 9.593134 AGTGACTCTTGTATAAATCTGATTGTC 57.407 33.333 3.22 4.54 0.00 3.18
309 342 9.950496 AAGTGACTCTTGTATAAATCTGATTGT 57.050 29.630 3.22 0.00 34.77 2.71
312 345 9.814899 CTGAAGTGACTCTTGTATAAATCTGAT 57.185 33.333 0.00 0.00 36.40 2.90
313 346 8.807118 ACTGAAGTGACTCTTGTATAAATCTGA 58.193 33.333 0.00 0.00 36.40 3.27
314 347 8.994429 ACTGAAGTGACTCTTGTATAAATCTG 57.006 34.615 0.00 0.00 36.40 2.90
315 348 9.429359 CAACTGAAGTGACTCTTGTATAAATCT 57.571 33.333 0.00 0.00 36.40 2.40
316 349 9.209175 ACAACTGAAGTGACTCTTGTATAAATC 57.791 33.333 0.00 0.00 36.40 2.17
317 350 8.993121 CACAACTGAAGTGACTCTTGTATAAAT 58.007 33.333 0.00 0.00 39.30 1.40
318 351 7.441157 CCACAACTGAAGTGACTCTTGTATAAA 59.559 37.037 0.00 0.00 39.30 1.40
319 352 6.929049 CCACAACTGAAGTGACTCTTGTATAA 59.071 38.462 0.00 0.00 39.30 0.98
320 353 6.041637 ACCACAACTGAAGTGACTCTTGTATA 59.958 38.462 0.00 0.00 39.30 1.47
321 354 5.163301 ACCACAACTGAAGTGACTCTTGTAT 60.163 40.000 0.00 0.00 39.30 2.29
322 355 4.161565 ACCACAACTGAAGTGACTCTTGTA 59.838 41.667 0.00 0.00 39.30 2.41
323 356 3.055094 ACCACAACTGAAGTGACTCTTGT 60.055 43.478 0.00 0.00 39.30 3.16
324 357 3.535561 ACCACAACTGAAGTGACTCTTG 58.464 45.455 0.00 0.00 39.30 3.02
325 358 3.914426 ACCACAACTGAAGTGACTCTT 57.086 42.857 0.00 0.00 39.30 2.85
326 359 3.914426 AACCACAACTGAAGTGACTCT 57.086 42.857 0.00 0.00 39.30 3.24
327 360 4.452455 CCATAACCACAACTGAAGTGACTC 59.548 45.833 0.00 0.00 39.30 3.36
328 361 4.141482 ACCATAACCACAACTGAAGTGACT 60.141 41.667 0.00 0.00 39.30 3.41
329 362 4.134563 ACCATAACCACAACTGAAGTGAC 58.865 43.478 0.00 0.00 39.30 3.67
330 363 4.431416 ACCATAACCACAACTGAAGTGA 57.569 40.909 0.00 0.00 39.30 3.41
331 364 5.305585 AGTACCATAACCACAACTGAAGTG 58.694 41.667 0.00 0.00 36.76 3.16
332 365 5.562298 AGTACCATAACCACAACTGAAGT 57.438 39.130 0.00 0.00 0.00 3.01
376 409 9.057089 GTAGAAATACAAATGGGATTGACCTAG 57.943 37.037 0.00 0.00 38.98 3.02
377 410 7.713507 CGTAGAAATACAAATGGGATTGACCTA 59.286 37.037 0.00 0.00 38.98 3.08
383 416 6.184789 ACACCGTAGAAATACAAATGGGATT 58.815 36.000 0.00 0.00 0.00 3.01
385 418 5.168647 ACACCGTAGAAATACAAATGGGA 57.831 39.130 0.00 0.00 0.00 4.37
392 425 7.329962 CACAATGAAGTACACCGTAGAAATACA 59.670 37.037 0.00 0.00 0.00 2.29
398 431 3.575256 ACCACAATGAAGTACACCGTAGA 59.425 43.478 0.00 0.00 0.00 2.59
403 436 4.868734 GCTAGTACCACAATGAAGTACACC 59.131 45.833 15.70 4.52 39.04 4.16
404 437 4.868734 GGCTAGTACCACAATGAAGTACAC 59.131 45.833 15.70 7.83 39.04 2.90
405 438 4.081309 GGGCTAGTACCACAATGAAGTACA 60.081 45.833 15.70 5.55 39.04 2.90
406 439 4.081309 TGGGCTAGTACCACAATGAAGTAC 60.081 45.833 4.43 8.69 37.27 2.73
407 440 4.098155 TGGGCTAGTACCACAATGAAGTA 58.902 43.478 4.43 0.00 31.83 2.24
408 441 2.910319 TGGGCTAGTACCACAATGAAGT 59.090 45.455 4.43 0.00 31.83 3.01
409 442 3.535561 CTGGGCTAGTACCACAATGAAG 58.464 50.000 4.43 0.00 33.63 3.02
414 461 0.323629 GTGCTGGGCTAGTACCACAA 59.676 55.000 7.87 0.00 36.16 3.33
420 467 1.186200 CTCACTGTGCTGGGCTAGTA 58.814 55.000 2.12 0.00 0.00 1.82
517 564 7.355778 ACGTTTCTCTGCAAAAGATAAGAAAG 58.644 34.615 8.33 2.67 31.07 2.62
524 571 4.642429 AGGTACGTTTCTCTGCAAAAGAT 58.358 39.130 0.00 0.00 33.29 2.40
530 577 2.624316 CGTAGGTACGTTTCTCTGCA 57.376 50.000 0.00 0.00 44.13 4.41
541 588 0.522076 CTCGCCACGAACGTAGGTAC 60.522 60.000 0.00 0.00 34.74 3.34
549 832 1.852895 CTACTATTGCTCGCCACGAAC 59.147 52.381 0.00 0.00 34.74 3.95
572 855 2.872858 GTGACCACACAAGGAAAGACTC 59.127 50.000 0.00 0.00 45.32 3.36
607 890 2.671682 GGGCTCGGCTCTCCTTTT 59.328 61.111 0.00 0.00 0.00 2.27
645 960 1.135546 AGCGATTCTCTGTGTCTGTCG 60.136 52.381 0.00 0.00 0.00 4.35
656 971 1.602851 TCTAGTGCCGTAGCGATTCTC 59.397 52.381 0.00 0.00 44.31 2.87
660 975 2.953466 TTTTCTAGTGCCGTAGCGAT 57.047 45.000 0.00 0.00 44.31 4.58
664 979 6.369065 ACATTCTTCTTTTTCTAGTGCCGTAG 59.631 38.462 0.00 0.00 0.00 3.51
667 982 5.613358 ACATTCTTCTTTTTCTAGTGCCG 57.387 39.130 0.00 0.00 0.00 5.69
687 1002 5.582665 GGTGTGGCACAAAGAAAATAAAACA 59.417 36.000 23.90 0.00 44.16 2.83
688 1003 5.007234 GGGTGTGGCACAAAGAAAATAAAAC 59.993 40.000 23.90 4.64 44.16 2.43
723 1038 3.564027 GGACGGCTGCATGCGTAC 61.564 66.667 14.09 1.06 44.05 3.67
750 1065 2.592287 GGTGGTTTTGGTCGCCGA 60.592 61.111 0.00 0.00 0.00 5.54
821 1144 1.066303 CTAGGAGTAGTGAGCAAGGCG 59.934 57.143 0.00 0.00 0.00 5.52
832 1155 2.359531 GGCAGCAGTGTACTAGGAGTAG 59.640 54.545 0.00 0.00 30.12 2.57
879 1202 9.661563 CCAACAACCTCTTTTATAGTGTACATA 57.338 33.333 0.00 0.00 0.00 2.29
880 1203 7.120726 GCCAACAACCTCTTTTATAGTGTACAT 59.879 37.037 0.00 0.00 0.00 2.29
900 1223 1.444119 GGAGTTTGTGCTCGCCAACA 61.444 55.000 1.25 0.00 36.41 3.33
913 1236 1.337823 CGAACGATGGGTGAGGAGTTT 60.338 52.381 0.00 0.00 0.00 2.66
934 1257 0.613292 ACAGGACTCGATGAGCTGGT 60.613 55.000 0.00 0.00 32.04 4.00
1087 1424 1.448119 CCGAGGCTGTAGATCGCTGA 61.448 60.000 0.00 0.00 35.18 4.26
1089 1426 2.851071 GCCGAGGCTGTAGATCGCT 61.851 63.158 6.90 0.00 38.26 4.93
1356 1730 0.032678 ACGTGAGAGCAGAACACTGG 59.967 55.000 0.00 0.00 33.13 4.00
1399 1774 2.280552 CGGGTTGAGGAACGGGAGA 61.281 63.158 0.00 0.00 32.28 3.71
1417 1792 2.359900 CTCATGTTCTTGGCCAGGTAC 58.640 52.381 16.46 16.46 0.00 3.34
1777 2200 2.103094 CCTCGCTGACATTCCTATTCCA 59.897 50.000 0.00 0.00 0.00 3.53
1784 2207 0.460987 CTCCACCTCGCTGACATTCC 60.461 60.000 0.00 0.00 0.00 3.01
1816 2239 1.134367 GATGATGGTCTGAACGACGGA 59.866 52.381 0.00 0.00 43.79 4.69
1848 2271 5.140747 GTCAGAAGACTTGTGATGGTACT 57.859 43.478 17.17 0.00 41.64 2.73
2239 2690 0.398696 AACCGGTAGCCATTGTGTGA 59.601 50.000 8.00 0.00 0.00 3.58
2391 2842 2.102357 CAGCTCACGTACGCCGAT 59.898 61.111 16.72 0.00 40.70 4.18
2463 2914 1.204146 GCTGAAGGTACCTCCCATGA 58.796 55.000 16.64 0.00 36.75 3.07
2536 2992 3.558321 CCATCGTCTAGTCTAGGGGAGAG 60.558 56.522 7.05 2.91 33.72 3.20
2561 3017 2.125512 GTCCGTTGCGATGAGGCT 60.126 61.111 0.00 0.00 0.00 4.58
2562 3018 3.554692 CGTCCGTTGCGATGAGGC 61.555 66.667 0.00 0.00 0.00 4.70
2564 3020 4.402192 ATCGTCCGTTGCGATGAG 57.598 55.556 5.44 0.00 45.79 2.90
2568 3024 2.048597 AAGCATCGTCCGTTGCGA 60.049 55.556 14.78 0.00 43.35 5.10
2569 3025 2.395690 GAAGCATCGTCCGTTGCG 59.604 61.111 14.78 0.00 43.35 4.85
2570 3026 2.395690 CGAAGCATCGTCCGTTGC 59.604 61.111 13.32 13.32 44.06 4.17
2579 3035 1.017387 CCTTAAGGCACCGAAGCATC 58.983 55.000 9.00 0.00 35.83 3.91
2580 3036 3.175133 CCTTAAGGCACCGAAGCAT 57.825 52.632 9.00 0.00 35.83 3.79
2581 3037 4.713946 CCTTAAGGCACCGAAGCA 57.286 55.556 9.00 0.00 35.83 3.91
2612 3068 9.770097 CTGTTGAGTCCACATGTTATTATAGAT 57.230 33.333 0.00 0.00 0.00 1.98
2613 3069 8.204160 CCTGTTGAGTCCACATGTTATTATAGA 58.796 37.037 0.00 0.00 0.00 1.98
2614 3070 7.987458 ACCTGTTGAGTCCACATGTTATTATAG 59.013 37.037 0.00 0.00 0.00 1.31
2615 3071 7.768582 CACCTGTTGAGTCCACATGTTATTATA 59.231 37.037 0.00 0.00 0.00 0.98
2616 3072 6.599244 CACCTGTTGAGTCCACATGTTATTAT 59.401 38.462 0.00 0.00 0.00 1.28
2617 3073 5.937540 CACCTGTTGAGTCCACATGTTATTA 59.062 40.000 0.00 0.00 0.00 0.98
2618 3074 4.761739 CACCTGTTGAGTCCACATGTTATT 59.238 41.667 0.00 0.00 0.00 1.40
2619 3075 4.326826 CACCTGTTGAGTCCACATGTTAT 58.673 43.478 0.00 0.00 0.00 1.89
2620 3076 3.495983 CCACCTGTTGAGTCCACATGTTA 60.496 47.826 0.00 0.00 0.00 2.41
2621 3077 2.575532 CACCTGTTGAGTCCACATGTT 58.424 47.619 0.00 0.00 0.00 2.71
2622 3078 1.202806 CCACCTGTTGAGTCCACATGT 60.203 52.381 0.00 0.00 0.00 3.21
2623 3079 1.527034 CCACCTGTTGAGTCCACATG 58.473 55.000 0.00 0.00 0.00 3.21
2624 3080 0.250901 GCCACCTGTTGAGTCCACAT 60.251 55.000 0.00 0.00 0.00 3.21
2625 3081 1.148273 GCCACCTGTTGAGTCCACA 59.852 57.895 0.00 0.00 0.00 4.17
2626 3082 0.886490 CAGCCACCTGTTGAGTCCAC 60.886 60.000 0.00 0.00 34.31 4.02
2627 3083 1.451504 CAGCCACCTGTTGAGTCCA 59.548 57.895 0.00 0.00 34.31 4.02
2628 3084 1.302832 CCAGCCACCTGTTGAGTCC 60.303 63.158 0.00 0.00 37.38 3.85
2629 3085 0.603975 GACCAGCCACCTGTTGAGTC 60.604 60.000 0.00 0.00 37.38 3.36
2630 3086 1.451936 GACCAGCCACCTGTTGAGT 59.548 57.895 0.00 0.00 37.38 3.41
2631 3087 1.302832 GGACCAGCCACCTGTTGAG 60.303 63.158 0.00 0.00 37.38 3.02
2632 3088 2.075566 TGGACCAGCCACCTGTTGA 61.076 57.895 0.00 0.00 43.33 3.18
2633 3089 2.515398 TGGACCAGCCACCTGTTG 59.485 61.111 0.00 0.00 43.33 3.33
2640 3096 1.376086 CTGACATGTGGACCAGCCA 59.624 57.895 1.15 0.00 46.96 4.75
2641 3097 0.957395 CACTGACATGTGGACCAGCC 60.957 60.000 1.15 0.00 34.56 4.85
2642 3098 0.035317 TCACTGACATGTGGACCAGC 59.965 55.000 1.15 0.00 38.40 4.85
2643 3099 1.609061 GGTCACTGACATGTGGACCAG 60.609 57.143 21.60 16.59 37.70 4.00
2644 3100 0.396435 GGTCACTGACATGTGGACCA 59.604 55.000 21.60 7.50 37.70 4.02
2645 3101 0.321653 GGGTCACTGACATGTGGACC 60.322 60.000 19.71 19.71 38.40 4.46
2646 3102 0.396435 TGGGTCACTGACATGTGGAC 59.604 55.000 1.15 5.56 38.40 4.02
2647 3103 1.135960 TTGGGTCACTGACATGTGGA 58.864 50.000 1.15 0.00 38.40 4.02
2648 3104 1.881973 CTTTGGGTCACTGACATGTGG 59.118 52.381 1.15 0.00 38.40 4.17
2649 3105 2.549754 GTCTTTGGGTCACTGACATGTG 59.450 50.000 1.15 0.00 39.15 3.21
2650 3106 2.172505 TGTCTTTGGGTCACTGACATGT 59.827 45.455 11.34 0.00 33.45 3.21
2651 3107 2.810274 CTGTCTTTGGGTCACTGACATG 59.190 50.000 11.34 0.00 37.10 3.21
2652 3108 2.224621 CCTGTCTTTGGGTCACTGACAT 60.225 50.000 11.34 0.00 37.10 3.06
2653 3109 1.140852 CCTGTCTTTGGGTCACTGACA 59.859 52.381 11.34 0.00 36.42 3.58
2654 3110 1.141053 ACCTGTCTTTGGGTCACTGAC 59.859 52.381 0.00 0.00 0.00 3.51
2655 3111 1.140852 CACCTGTCTTTGGGTCACTGA 59.859 52.381 0.00 0.00 32.95 3.41
2656 3112 1.597742 CACCTGTCTTTGGGTCACTG 58.402 55.000 0.00 0.00 32.95 3.66
2657 3113 0.179018 GCACCTGTCTTTGGGTCACT 60.179 55.000 0.00 0.00 32.95 3.41
2658 3114 0.465460 TGCACCTGTCTTTGGGTCAC 60.465 55.000 0.00 0.00 32.95 3.67
2659 3115 0.478072 ATGCACCTGTCTTTGGGTCA 59.522 50.000 0.00 0.00 32.95 4.02
2660 3116 1.541588 GAATGCACCTGTCTTTGGGTC 59.458 52.381 0.00 0.00 32.95 4.46
2661 3117 1.620822 GAATGCACCTGTCTTTGGGT 58.379 50.000 0.00 0.00 36.07 4.51
2662 3118 0.890683 GGAATGCACCTGTCTTTGGG 59.109 55.000 0.00 0.00 0.00 4.12
2663 3119 0.890683 GGGAATGCACCTGTCTTTGG 59.109 55.000 0.00 0.00 0.00 3.28
2664 3120 1.270550 GTGGGAATGCACCTGTCTTTG 59.729 52.381 0.00 0.00 0.00 2.77
2665 3121 1.145738 AGTGGGAATGCACCTGTCTTT 59.854 47.619 0.00 0.00 0.00 2.52
2666 3122 0.773644 AGTGGGAATGCACCTGTCTT 59.226 50.000 0.00 0.00 0.00 3.01
2667 3123 0.037303 CAGTGGGAATGCACCTGTCT 59.963 55.000 0.00 0.00 0.00 3.41
2668 3124 1.589716 GCAGTGGGAATGCACCTGTC 61.590 60.000 0.00 0.00 43.31 3.51
2669 3125 1.604593 GCAGTGGGAATGCACCTGT 60.605 57.895 0.00 0.00 43.31 4.00
2670 3126 3.281240 GCAGTGGGAATGCACCTG 58.719 61.111 0.00 0.00 43.31 4.00
2675 3131 0.675633 AACTGTTGCAGTGGGAATGC 59.324 50.000 2.31 0.00 44.62 3.56
2676 3132 2.361757 TCAAACTGTTGCAGTGGGAATG 59.638 45.455 2.31 0.00 44.62 2.67
2677 3133 2.624838 CTCAAACTGTTGCAGTGGGAAT 59.375 45.455 2.31 0.00 44.62 3.01
2678 3134 2.023673 CTCAAACTGTTGCAGTGGGAA 58.976 47.619 2.31 0.00 44.62 3.97
2679 3135 1.679139 CTCAAACTGTTGCAGTGGGA 58.321 50.000 2.31 3.37 44.62 4.37
2680 3136 0.031178 GCTCAAACTGTTGCAGTGGG 59.969 55.000 2.31 0.00 44.62 4.61
2681 3137 0.031178 GGCTCAAACTGTTGCAGTGG 59.969 55.000 2.31 0.00 44.62 4.00
2685 3141 1.761449 TGAAGGCTCAAACTGTTGCA 58.239 45.000 0.00 0.00 34.50 4.08
2704 3160 3.887716 GCATAGCCATGGAAGAACTCATT 59.112 43.478 18.40 0.00 32.36 2.57
2750 3216 9.464714 AGTAGTTTAATCTGAATACATAGTGCG 57.535 33.333 0.00 0.00 0.00 5.34
2762 3228 7.122353 ACTTTAGCTCGGAGTAGTTTAATCTGA 59.878 37.037 6.90 0.00 35.98 3.27
2804 3272 3.091633 ACCCTGCTCAACATGCTAAAT 57.908 42.857 0.00 0.00 0.00 1.40
2888 3357 8.603242 AGAAATGTAGGTTTGTAACTGTGTAG 57.397 34.615 0.00 0.00 0.00 2.74
2957 3426 4.678256 TCTGGACTCAGAAGTGGATTACT 58.322 43.478 0.00 0.00 46.08 2.24
3040 3511 8.356657 CAATAATCTACCCCGCAAAAATATTGA 58.643 33.333 0.00 0.00 31.82 2.57
3043 3514 7.007723 TCCAATAATCTACCCCGCAAAAATAT 58.992 34.615 0.00 0.00 0.00 1.28
3045 3516 5.205056 TCCAATAATCTACCCCGCAAAAAT 58.795 37.500 0.00 0.00 0.00 1.82
3053 3524 3.074412 CACGCATCCAATAATCTACCCC 58.926 50.000 0.00 0.00 0.00 4.95
3066 3537 4.148825 AGCCGACCTCACGCATCC 62.149 66.667 0.00 0.00 0.00 3.51
3080 3551 5.939296 TCCAAATGATTTGAAAATTGGAGCC 59.061 36.000 18.82 0.00 43.26 4.70
3150 3621 7.333528 TCAGAGCATGAACAGTAAACTTTTT 57.666 32.000 0.00 0.00 34.02 1.94
3151 3622 6.942532 TCAGAGCATGAACAGTAAACTTTT 57.057 33.333 0.00 0.00 34.02 2.27
3192 3664 6.462768 GGACATCTGAATAGCTCTCAGTCAAT 60.463 42.308 19.87 8.39 41.00 2.57
3194 3666 4.340666 GGACATCTGAATAGCTCTCAGTCA 59.659 45.833 19.87 5.49 41.00 3.41
3195 3667 4.340666 TGGACATCTGAATAGCTCTCAGTC 59.659 45.833 19.87 13.45 41.00 3.51
3196 3668 4.285020 TGGACATCTGAATAGCTCTCAGT 58.715 43.478 19.87 7.07 41.00 3.41
3203 3675 6.709397 TCAGATCATTTGGACATCTGAATAGC 59.291 38.462 8.13 0.00 46.15 2.97
3294 3766 4.515191 GTCATCTGCACCTAGTCACAAAAA 59.485 41.667 0.00 0.00 0.00 1.94
3304 3776 1.757118 GTGCCTAGTCATCTGCACCTA 59.243 52.381 7.97 0.00 46.33 3.08
3305 3777 0.539051 GTGCCTAGTCATCTGCACCT 59.461 55.000 7.97 0.00 46.33 4.00
3309 3781 2.675348 GTTTCAGTGCCTAGTCATCTGC 59.325 50.000 0.00 0.00 0.00 4.26
3314 3786 3.111853 CAGTGTTTCAGTGCCTAGTCA 57.888 47.619 0.00 0.00 0.00 3.41
3335 3809 4.211584 AGCGTGATAGTGATAGTACGAGTG 59.788 45.833 0.00 0.00 33.78 3.51
3340 3814 5.419760 TGACAGCGTGATAGTGATAGTAC 57.580 43.478 0.00 0.00 0.00 2.73
3341 3815 5.998363 AGATGACAGCGTGATAGTGATAGTA 59.002 40.000 0.00 0.00 0.00 1.82
3342 3816 4.824537 AGATGACAGCGTGATAGTGATAGT 59.175 41.667 0.00 0.00 0.00 2.12
3343 3817 5.369685 AGATGACAGCGTGATAGTGATAG 57.630 43.478 0.00 0.00 0.00 2.08
3344 3818 4.083802 CGAGATGACAGCGTGATAGTGATA 60.084 45.833 0.00 0.00 0.00 2.15
3345 3819 3.304324 CGAGATGACAGCGTGATAGTGAT 60.304 47.826 0.00 0.00 0.00 3.06
3346 3820 2.032178 CGAGATGACAGCGTGATAGTGA 59.968 50.000 0.00 0.00 0.00 3.41
3347 3821 2.379732 CGAGATGACAGCGTGATAGTG 58.620 52.381 0.00 0.00 0.00 2.74
3359 3835 2.586357 GCTTCCGGCCGAGATGAC 60.586 66.667 30.73 15.09 34.27 3.06
3376 3852 1.519455 GATCGAACGCCACTGGAGG 60.519 63.158 0.00 0.00 0.00 4.30
3377 3853 1.078759 GTGATCGAACGCCACTGGAG 61.079 60.000 0.00 0.00 0.00 3.86
3378 3854 1.080093 GTGATCGAACGCCACTGGA 60.080 57.895 0.00 0.00 0.00 3.86
3379 3855 1.078759 GAGTGATCGAACGCCACTGG 61.079 60.000 19.64 0.00 40.80 4.00
3380 3856 1.406219 CGAGTGATCGAACGCCACTG 61.406 60.000 19.64 11.93 40.80 3.66
3381 3857 1.154016 CGAGTGATCGAACGCCACT 60.154 57.895 16.59 16.59 43.11 4.00
3382 3858 0.179181 TACGAGTGATCGAACGCCAC 60.179 55.000 4.44 2.95 36.85 5.01
3383 3859 0.179181 GTACGAGTGATCGAACGCCA 60.179 55.000 4.44 0.00 36.85 5.69
3384 3860 0.098376 AGTACGAGTGATCGAACGCC 59.902 55.000 4.44 0.00 36.85 5.68
3385 3861 2.726555 TAGTACGAGTGATCGAACGC 57.273 50.000 4.44 0.00 36.85 4.84
3386 3862 4.025896 AGTGATAGTACGAGTGATCGAACG 60.026 45.833 4.44 4.24 36.85 3.95
3387 3863 5.406767 AGTGATAGTACGAGTGATCGAAC 57.593 43.478 4.44 0.00 36.85 3.95
3388 3864 6.927381 TGATAGTGATAGTACGAGTGATCGAA 59.073 38.462 4.44 0.00 36.85 3.71
3389 3865 6.365518 GTGATAGTGATAGTACGAGTGATCGA 59.634 42.308 4.44 0.00 36.85 3.59
3390 3866 6.527089 GTGATAGTGATAGTACGAGTGATCG 58.473 44.000 0.00 0.00 39.31 3.69
3391 3867 6.527089 CGTGATAGTGATAGTACGAGTGATC 58.473 44.000 0.00 0.00 33.78 2.92
3392 3868 5.107026 GCGTGATAGTGATAGTACGAGTGAT 60.107 44.000 0.00 0.00 33.78 3.06
3393 3869 4.210746 GCGTGATAGTGATAGTACGAGTGA 59.789 45.833 0.00 0.00 33.78 3.41
3394 3870 4.211584 AGCGTGATAGTGATAGTACGAGTG 59.788 45.833 0.00 0.00 33.78 3.51
3395 3871 4.211584 CAGCGTGATAGTGATAGTACGAGT 59.788 45.833 0.00 0.00 33.78 4.18
3396 3872 4.211584 ACAGCGTGATAGTGATAGTACGAG 59.788 45.833 0.00 0.00 33.78 4.18
3397 3873 4.124970 ACAGCGTGATAGTGATAGTACGA 58.875 43.478 0.00 0.00 33.78 3.43
3398 3874 4.025145 TGACAGCGTGATAGTGATAGTACG 60.025 45.833 0.00 0.00 34.93 3.67
3399 3875 5.419760 TGACAGCGTGATAGTGATAGTAC 57.580 43.478 0.00 0.00 0.00 2.73
3400 3876 5.998363 AGATGACAGCGTGATAGTGATAGTA 59.002 40.000 0.00 0.00 0.00 1.82
3401 3877 4.824537 AGATGACAGCGTGATAGTGATAGT 59.175 41.667 0.00 0.00 0.00 2.12
3402 3878 5.369685 AGATGACAGCGTGATAGTGATAG 57.630 43.478 0.00 0.00 0.00 2.08
3403 3879 4.083802 CGAGATGACAGCGTGATAGTGATA 60.084 45.833 0.00 0.00 0.00 2.15
3404 3880 3.304324 CGAGATGACAGCGTGATAGTGAT 60.304 47.826 0.00 0.00 0.00 3.06
3405 3881 2.032178 CGAGATGACAGCGTGATAGTGA 59.968 50.000 0.00 0.00 0.00 3.41
3406 3882 2.379732 CGAGATGACAGCGTGATAGTG 58.620 52.381 0.00 0.00 0.00 2.74
3407 3883 1.335182 CCGAGATGACAGCGTGATAGT 59.665 52.381 0.00 0.00 0.00 2.12
3408 3884 1.928152 GCCGAGATGACAGCGTGATAG 60.928 57.143 0.00 0.00 0.00 2.08
3409 3885 0.030773 GCCGAGATGACAGCGTGATA 59.969 55.000 0.00 0.00 0.00 2.15
3410 3886 1.227089 GCCGAGATGACAGCGTGAT 60.227 57.895 0.00 0.00 0.00 3.06
3411 3887 2.181777 GCCGAGATGACAGCGTGA 59.818 61.111 0.00 0.00 0.00 4.35
3412 3888 2.163390 CAGCCGAGATGACAGCGTG 61.163 63.158 0.00 0.00 0.00 5.34
3413 3889 2.182791 CAGCCGAGATGACAGCGT 59.817 61.111 0.00 0.00 0.00 5.07
3414 3890 2.563050 TTCCAGCCGAGATGACAGCG 62.563 60.000 0.00 0.00 0.00 5.18
3415 3891 0.809241 CTTCCAGCCGAGATGACAGC 60.809 60.000 0.00 0.00 0.00 4.40
3416 3892 0.809241 GCTTCCAGCCGAGATGACAG 60.809 60.000 0.00 0.00 34.48 3.51
3417 3893 1.219124 GCTTCCAGCCGAGATGACA 59.781 57.895 0.00 0.00 34.48 3.58
3418 3894 4.116878 GCTTCCAGCCGAGATGAC 57.883 61.111 0.00 0.00 34.48 3.06
3446 3922 0.526524 CGTGCTCTCAGGGATCGAAC 60.527 60.000 0.00 0.00 0.00 3.95
3457 3933 2.044946 ATTTGCCCCCGTGCTCTC 60.045 61.111 0.00 0.00 0.00 3.20
3458 3934 2.044946 GATTTGCCCCCGTGCTCT 60.045 61.111 0.00 0.00 0.00 4.09
3459 3935 0.393808 TAAGATTTGCCCCCGTGCTC 60.394 55.000 0.00 0.00 0.00 4.26
3460 3936 0.679960 GTAAGATTTGCCCCCGTGCT 60.680 55.000 0.00 0.00 0.00 4.40
3461 3937 0.963355 TGTAAGATTTGCCCCCGTGC 60.963 55.000 0.00 0.00 0.00 5.34
3462 3938 1.472480 CTTGTAAGATTTGCCCCCGTG 59.528 52.381 0.00 0.00 0.00 4.94
3463 3939 1.353022 TCTTGTAAGATTTGCCCCCGT 59.647 47.619 0.00 0.00 0.00 5.28
3464 3940 2.122783 TCTTGTAAGATTTGCCCCCG 57.877 50.000 0.00 0.00 0.00 5.73
3465 3941 4.882842 TTTTCTTGTAAGATTTGCCCCC 57.117 40.909 0.00 0.00 34.49 5.40
3484 3960 3.004002 GCTGTAGTTTGCCCGTAGTTTTT 59.996 43.478 0.00 0.00 0.00 1.94
3485 3961 2.551032 GCTGTAGTTTGCCCGTAGTTTT 59.449 45.455 0.00 0.00 0.00 2.43
3486 3962 2.148768 GCTGTAGTTTGCCCGTAGTTT 58.851 47.619 0.00 0.00 0.00 2.66
3487 3963 1.346722 AGCTGTAGTTTGCCCGTAGTT 59.653 47.619 0.00 0.00 0.00 2.24
3488 3964 0.974383 AGCTGTAGTTTGCCCGTAGT 59.026 50.000 0.00 0.00 0.00 2.73
3489 3965 2.953466 TAGCTGTAGTTTGCCCGTAG 57.047 50.000 0.00 0.00 0.00 3.51
3490 3966 2.827322 TCTTAGCTGTAGTTTGCCCGTA 59.173 45.455 0.00 0.00 0.00 4.02
3491 3967 1.621814 TCTTAGCTGTAGTTTGCCCGT 59.378 47.619 0.00 0.00 0.00 5.28
3492 3968 2.380084 TCTTAGCTGTAGTTTGCCCG 57.620 50.000 0.00 0.00 0.00 6.13
3493 3969 6.150474 TGTTAAATCTTAGCTGTAGTTTGCCC 59.850 38.462 0.00 0.00 0.00 5.36
3494 3970 7.141100 TGTTAAATCTTAGCTGTAGTTTGCC 57.859 36.000 0.00 0.00 0.00 4.52
3495 3971 6.743172 GCTGTTAAATCTTAGCTGTAGTTTGC 59.257 38.462 0.00 0.00 33.53 3.68
3496 3972 7.119846 AGGCTGTTAAATCTTAGCTGTAGTTTG 59.880 37.037 0.00 0.00 36.45 2.93
3497 3973 7.168905 AGGCTGTTAAATCTTAGCTGTAGTTT 58.831 34.615 0.00 0.00 36.45 2.66
3498 3974 6.712276 AGGCTGTTAAATCTTAGCTGTAGTT 58.288 36.000 0.00 0.00 36.45 2.24
3499 3975 6.301169 AGGCTGTTAAATCTTAGCTGTAGT 57.699 37.500 0.00 0.00 36.45 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.