Multiple sequence alignment - TraesCS7A01G428900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G428900 chr7A 100.000 4005 0 0 1 4005 622638602 622634598 0.000000e+00 7396.0
1 TraesCS7A01G428900 chr7A 80.066 1209 179 39 2312 3483 698239504 698240687 0.000000e+00 841.0
2 TraesCS7A01G428900 chr7A 78.668 1036 168 32 2487 3483 169766934 169767955 1.210000e-179 640.0
3 TraesCS7A01G428900 chr7A 76.443 433 64 20 25 424 21225058 21224631 2.440000e-47 200.0
4 TraesCS7A01G428900 chr7A 79.087 263 33 11 25 267 699610577 699610317 1.150000e-35 161.0
5 TraesCS7A01G428900 chr5A 98.095 3464 37 6 25 3483 234151369 234154808 0.000000e+00 6004.0
6 TraesCS7A01G428900 chr5A 90.723 636 35 7 842 1471 309684051 309684668 0.000000e+00 826.0
7 TraesCS7A01G428900 chr5A 83.966 237 25 12 3772 4005 311234006 311233780 8.720000e-52 215.0
8 TraesCS7A01G428900 chr5A 77.982 109 20 4 428 532 358914143 358914251 9.290000e-07 65.8
9 TraesCS7A01G428900 chr5D 92.332 639 43 3 842 1474 242629793 242629155 0.000000e+00 904.0
10 TraesCS7A01G428900 chr5B 92.296 636 42 4 842 1471 255968176 255968810 0.000000e+00 896.0
11 TraesCS7A01G428900 chr5B 87.288 118 14 1 25 141 58351945 58352062 2.510000e-27 134.0
12 TraesCS7A01G428900 chr5B 79.330 179 35 1 304 480 58352199 58352377 1.510000e-24 124.0
13 TraesCS7A01G428900 chr6A 79.674 1289 181 54 2212 3483 52612538 52613762 0.000000e+00 854.0
14 TraesCS7A01G428900 chr6A 83.101 716 93 20 2212 2913 64998975 64998274 9.450000e-176 627.0
15 TraesCS7A01G428900 chr6A 78.354 328 41 22 3691 4005 176730728 176730418 6.840000e-43 185.0
16 TraesCS7A01G428900 chr1A 79.967 1203 177 36 2312 3483 51831208 51830039 0.000000e+00 828.0
17 TraesCS7A01G428900 chr1A 85.625 320 37 7 3690 4005 276359610 276359924 1.070000e-85 327.0
18 TraesCS7A01G428900 chr1A 79.403 335 44 22 3690 4004 54250064 54249735 3.140000e-51 213.0
19 TraesCS7A01G428900 chr7D 81.827 1018 147 25 2212 3217 63968804 63967813 0.000000e+00 821.0
20 TraesCS7A01G428900 chr2A 79.259 1215 179 44 2312 3483 575198548 575197364 0.000000e+00 780.0
21 TraesCS7A01G428900 chr2A 98.225 169 2 1 3482 3650 495825625 495825458 1.090000e-75 294.0
22 TraesCS7A01G428900 chr2A 88.889 180 14 4 3826 4005 263867002 263867175 2.420000e-52 217.0
23 TraesCS7A01G428900 chr2A 85.167 209 19 8 3799 4005 343670402 343670204 1.890000e-48 204.0
24 TraesCS7A01G428900 chr2A 88.136 118 13 1 25 141 725016908 725017025 5.400000e-29 139.0
25 TraesCS7A01G428900 chr3A 79.517 1201 162 39 2312 3483 725500292 725501437 0.000000e+00 778.0
26 TraesCS7A01G428900 chr3A 80.490 1020 150 29 2486 3483 668133279 668134271 0.000000e+00 736.0
27 TraesCS7A01G428900 chr3A 80.849 966 150 24 2538 3483 47669675 47670625 0.000000e+00 726.0
28 TraesCS7A01G428900 chr3A 79.392 1019 150 33 2486 3477 405270677 405271662 0.000000e+00 664.0
29 TraesCS7A01G428900 chr3A 78.450 413 72 11 22 424 718806731 718807136 1.850000e-63 254.0
30 TraesCS7A01G428900 chr3A 80.488 328 35 23 3691 4005 84372921 84372610 1.450000e-54 224.0
31 TraesCS7A01G428900 chr3A 79.012 324 40 27 3690 4005 516092503 516092806 3.160000e-46 196.0
32 TraesCS7A01G428900 chr3A 75.476 420 73 17 25 434 725497716 725498115 1.140000e-40 178.0
33 TraesCS7A01G428900 chrUn 79.921 1016 148 38 2489 3483 41082199 41081219 0.000000e+00 695.0
34 TraesCS7A01G428900 chrUn 73.624 436 66 26 68 481 79671531 79671123 5.440000e-24 122.0
35 TraesCS7A01G428900 chr1B 80.506 949 140 35 2560 3478 54232965 54232032 0.000000e+00 686.0
36 TraesCS7A01G428900 chr1B 79.122 1025 160 37 2485 3483 513247049 513246053 0.000000e+00 658.0
37 TraesCS7A01G428900 chr1B 98.817 169 2 0 3479 3647 313332054 313332222 6.500000e-78 302.0
38 TraesCS7A01G428900 chr2B 80.105 950 144 34 2560 3478 644731133 644730198 0.000000e+00 665.0
39 TraesCS7A01G428900 chr2B 80.084 949 146 32 2560 3478 645421202 645420267 0.000000e+00 665.0
40 TraesCS7A01G428900 chr2B 77.519 943 161 23 2560 3481 32703045 32703957 1.650000e-143 520.0
41 TraesCS7A01G428900 chr2B 99.408 169 1 0 3482 3650 182011274 182011106 1.400000e-79 307.0
42 TraesCS7A01G428900 chr2B 79.681 251 29 11 24 254 125007333 125007581 1.150000e-35 161.0
43 TraesCS7A01G428900 chr6B 85.255 529 60 17 1474 1995 427638656 427638139 2.740000e-146 529.0
44 TraesCS7A01G428900 chr6B 98.810 168 2 0 3481 3648 703948890 703948723 2.340000e-77 300.0
45 TraesCS7A01G428900 chr6B 97.661 171 3 1 3477 3646 232732863 232733033 3.910000e-75 292.0
46 TraesCS7A01G428900 chr6B 76.569 478 75 19 25 472 682856239 682856709 1.120000e-55 228.0
47 TraesCS7A01G428900 chr4B 82.651 611 87 15 2876 3483 94320028 94319434 1.280000e-144 523.0
48 TraesCS7A01G428900 chr4B 79.443 754 98 29 2770 3483 324438415 324437679 7.780000e-132 481.0
49 TraesCS7A01G428900 chr4B 81.102 254 41 6 25 271 94323406 94323153 3.160000e-46 196.0
50 TraesCS7A01G428900 chr4D 80.365 713 107 20 2487 3176 206298159 206297457 9.930000e-141 510.0
51 TraesCS7A01G428900 chr4A 81.109 577 77 18 2312 2867 404266224 404266789 2.210000e-117 433.0
52 TraesCS7A01G428900 chr4A 87.179 195 15 6 3816 4005 553047483 553047294 3.140000e-51 213.0
53 TraesCS7A01G428900 chr3B 83.090 479 77 4 3008 3483 714975890 714975413 2.210000e-117 433.0
54 TraesCS7A01G428900 chr3B 98.810 168 2 0 3482 3649 246303850 246304017 2.340000e-77 300.0
55 TraesCS7A01G428900 chr3B 76.860 484 63 22 20 481 482572724 482573180 1.120000e-55 228.0
56 TraesCS7A01G428900 chr2D 82.387 511 76 9 2984 3483 558566782 558566275 2.210000e-117 433.0
57 TraesCS7A01G428900 chr2D 77.212 452 67 16 24 465 174692323 174691898 8.660000e-57 231.0
58 TraesCS7A01G428900 chr7B 96.133 181 5 2 3469 3648 745673957 745674136 1.090000e-75 294.0
59 TraesCS7A01G428900 chr7B 97.647 170 4 0 3478 3647 500023014 500023183 3.910000e-75 292.0
60 TraesCS7A01G428900 chr7B 95.055 182 8 1 3479 3660 707827141 707826961 6.550000e-73 285.0
61 TraesCS7A01G428900 chr7B 76.409 479 64 24 25 481 655102045 655101594 3.140000e-51 213.0
62 TraesCS7A01G428900 chr3D 87.826 115 14 0 25 139 538135070 538135184 6.980000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G428900 chr7A 622634598 622638602 4004 True 7396.0 7396 100.0000 1 4005 1 chr7A.!!$R2 4004
1 TraesCS7A01G428900 chr7A 698239504 698240687 1183 False 841.0 841 80.0660 2312 3483 1 chr7A.!!$F2 1171
2 TraesCS7A01G428900 chr7A 169766934 169767955 1021 False 640.0 640 78.6680 2487 3483 1 chr7A.!!$F1 996
3 TraesCS7A01G428900 chr5A 234151369 234154808 3439 False 6004.0 6004 98.0950 25 3483 1 chr5A.!!$F1 3458
4 TraesCS7A01G428900 chr5A 309684051 309684668 617 False 826.0 826 90.7230 842 1471 1 chr5A.!!$F2 629
5 TraesCS7A01G428900 chr5D 242629155 242629793 638 True 904.0 904 92.3320 842 1474 1 chr5D.!!$R1 632
6 TraesCS7A01G428900 chr5B 255968176 255968810 634 False 896.0 896 92.2960 842 1471 1 chr5B.!!$F1 629
7 TraesCS7A01G428900 chr6A 52612538 52613762 1224 False 854.0 854 79.6740 2212 3483 1 chr6A.!!$F1 1271
8 TraesCS7A01G428900 chr6A 64998274 64998975 701 True 627.0 627 83.1010 2212 2913 1 chr6A.!!$R1 701
9 TraesCS7A01G428900 chr1A 51830039 51831208 1169 True 828.0 828 79.9670 2312 3483 1 chr1A.!!$R1 1171
10 TraesCS7A01G428900 chr7D 63967813 63968804 991 True 821.0 821 81.8270 2212 3217 1 chr7D.!!$R1 1005
11 TraesCS7A01G428900 chr2A 575197364 575198548 1184 True 780.0 780 79.2590 2312 3483 1 chr2A.!!$R3 1171
12 TraesCS7A01G428900 chr3A 668133279 668134271 992 False 736.0 736 80.4900 2486 3483 1 chr3A.!!$F4 997
13 TraesCS7A01G428900 chr3A 47669675 47670625 950 False 726.0 726 80.8490 2538 3483 1 chr3A.!!$F1 945
14 TraesCS7A01G428900 chr3A 405270677 405271662 985 False 664.0 664 79.3920 2486 3477 1 chr3A.!!$F2 991
15 TraesCS7A01G428900 chr3A 725497716 725501437 3721 False 478.0 778 77.4965 25 3483 2 chr3A.!!$F6 3458
16 TraesCS7A01G428900 chrUn 41081219 41082199 980 True 695.0 695 79.9210 2489 3483 1 chrUn.!!$R1 994
17 TraesCS7A01G428900 chr1B 54232032 54232965 933 True 686.0 686 80.5060 2560 3478 1 chr1B.!!$R1 918
18 TraesCS7A01G428900 chr1B 513246053 513247049 996 True 658.0 658 79.1220 2485 3483 1 chr1B.!!$R2 998
19 TraesCS7A01G428900 chr2B 644730198 644731133 935 True 665.0 665 80.1050 2560 3478 1 chr2B.!!$R2 918
20 TraesCS7A01G428900 chr2B 645420267 645421202 935 True 665.0 665 80.0840 2560 3478 1 chr2B.!!$R3 918
21 TraesCS7A01G428900 chr2B 32703045 32703957 912 False 520.0 520 77.5190 2560 3481 1 chr2B.!!$F1 921
22 TraesCS7A01G428900 chr6B 427638139 427638656 517 True 529.0 529 85.2550 1474 1995 1 chr6B.!!$R1 521
23 TraesCS7A01G428900 chr4B 324437679 324438415 736 True 481.0 481 79.4430 2770 3483 1 chr4B.!!$R1 713
24 TraesCS7A01G428900 chr4B 94319434 94323406 3972 True 359.5 523 81.8765 25 3483 2 chr4B.!!$R2 3458
25 TraesCS7A01G428900 chr4D 206297457 206298159 702 True 510.0 510 80.3650 2487 3176 1 chr4D.!!$R1 689
26 TraesCS7A01G428900 chr4A 404266224 404266789 565 False 433.0 433 81.1090 2312 2867 1 chr4A.!!$F1 555
27 TraesCS7A01G428900 chr2D 558566275 558566782 507 True 433.0 433 82.3870 2984 3483 1 chr2D.!!$R2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.035176 TTTATATACGCCGCCACCCC 59.965 55.000 0.00 0.0 0.00 4.95 F
815 824 0.175760 GTCCATCGCCACTAGCTTGA 59.824 55.000 1.04 0.0 40.39 3.02 F
820 829 0.178068 TCGCCACTAGCTTGATTCCC 59.822 55.000 1.04 0.0 40.39 3.97 F
821 830 0.179000 CGCCACTAGCTTGATTCCCT 59.821 55.000 1.04 0.0 40.39 4.20 F
2658 4204 1.389106 GTCGATACGGCACTTGTGAAC 59.611 52.381 4.79 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1103 1.942657 GAACTGCAGCACAAGAAGACA 59.057 47.619 15.27 0.00 0.00 3.41 R
1825 3252 2.964740 TGGAGAAGACTGCTTGAATCG 58.035 47.619 0.00 0.00 35.49 3.34 R
2658 4204 4.615961 CGACTTCGTACCAAGACTTAAGTG 59.384 45.833 14.14 0.54 34.11 3.16 R
2898 4528 7.454260 AAACATCCATCATCATCATCATCAG 57.546 36.000 0.00 0.00 0.00 2.90 R
3676 5474 0.036294 GAGGGGCACTACAACAGGAC 60.036 60.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.148340 CCCCTTTATATACGCCGCC 57.852 57.895 0.00 0.00 0.00 6.13
19 20 0.322322 CCCCTTTATATACGCCGCCA 59.678 55.000 0.00 0.00 0.00 5.69
20 21 1.435577 CCCTTTATATACGCCGCCAC 58.564 55.000 0.00 0.00 0.00 5.01
21 22 1.435577 CCTTTATATACGCCGCCACC 58.564 55.000 0.00 0.00 0.00 4.61
22 23 1.435577 CTTTATATACGCCGCCACCC 58.564 55.000 0.00 0.00 0.00 4.61
23 24 0.035176 TTTATATACGCCGCCACCCC 59.965 55.000 0.00 0.00 0.00 4.95
220 225 1.139095 GACGTAGGCTTCCCTGTCG 59.861 63.158 0.00 7.30 42.90 4.35
317 326 1.479021 GCTACGACCTACCTCCATCCT 60.479 57.143 0.00 0.00 0.00 3.24
736 745 4.024048 CACGTCAATTCATATAACCTGGGC 60.024 45.833 0.00 0.00 0.00 5.36
812 821 1.264749 TTGGTCCATCGCCACTAGCT 61.265 55.000 0.00 0.00 40.39 3.32
813 822 1.264749 TGGTCCATCGCCACTAGCTT 61.265 55.000 0.00 0.00 40.39 3.74
814 823 0.811616 GGTCCATCGCCACTAGCTTG 60.812 60.000 0.00 0.00 40.39 4.01
815 824 0.175760 GTCCATCGCCACTAGCTTGA 59.824 55.000 1.04 0.00 40.39 3.02
816 825 1.123077 TCCATCGCCACTAGCTTGAT 58.877 50.000 1.04 0.00 40.39 2.57
817 826 1.486310 TCCATCGCCACTAGCTTGATT 59.514 47.619 1.04 0.00 40.39 2.57
818 827 1.869767 CCATCGCCACTAGCTTGATTC 59.130 52.381 1.04 0.00 40.39 2.52
819 828 1.869767 CATCGCCACTAGCTTGATTCC 59.130 52.381 1.04 0.00 40.39 3.01
820 829 0.178068 TCGCCACTAGCTTGATTCCC 59.822 55.000 1.04 0.00 40.39 3.97
821 830 0.179000 CGCCACTAGCTTGATTCCCT 59.821 55.000 1.04 0.00 40.39 4.20
822 831 1.407437 CGCCACTAGCTTGATTCCCTT 60.407 52.381 1.04 0.00 40.39 3.95
823 832 2.158957 CGCCACTAGCTTGATTCCCTTA 60.159 50.000 1.04 0.00 40.39 2.69
824 833 3.206964 GCCACTAGCTTGATTCCCTTAC 58.793 50.000 1.04 0.00 38.99 2.34
825 834 3.458189 CCACTAGCTTGATTCCCTTACG 58.542 50.000 1.04 0.00 0.00 3.18
826 835 3.118738 CCACTAGCTTGATTCCCTTACGT 60.119 47.826 1.04 0.00 0.00 3.57
827 836 4.504858 CACTAGCTTGATTCCCTTACGTT 58.495 43.478 1.04 0.00 0.00 3.99
828 837 4.330074 CACTAGCTTGATTCCCTTACGTTG 59.670 45.833 1.04 0.00 0.00 4.10
829 838 3.695830 AGCTTGATTCCCTTACGTTGA 57.304 42.857 0.00 0.00 0.00 3.18
830 839 3.600388 AGCTTGATTCCCTTACGTTGAG 58.400 45.455 0.00 0.00 0.00 3.02
831 840 2.096013 GCTTGATTCCCTTACGTTGAGC 59.904 50.000 0.00 0.00 0.00 4.26
1030 1039 3.305131 CATCAAGCCATACATGGTGATGC 60.305 47.826 20.33 4.73 45.86 3.91
1825 3252 1.432514 TGTTCGTCTGCATGCTCTTC 58.567 50.000 20.33 6.01 0.00 2.87
2034 3545 3.064931 CCGGTCAACTAAGTTCCAAGTC 58.935 50.000 0.00 0.00 0.00 3.01
2346 3876 2.753452 GGTGTCTGATCGAGGTACAAGA 59.247 50.000 0.00 0.00 0.00 3.02
2658 4204 1.389106 GTCGATACGGCACTTGTGAAC 59.611 52.381 4.79 0.00 0.00 3.18
2898 4528 5.128205 TGATGATGATGATGTTCCTGTTCC 58.872 41.667 0.00 0.00 0.00 3.62
3484 5282 7.801716 AACAACGCATATATGGACATTTACT 57.198 32.000 14.51 0.00 0.00 2.24
3485 5283 7.421530 ACAACGCATATATGGACATTTACTC 57.578 36.000 14.51 0.00 0.00 2.59
3486 5284 6.426937 ACAACGCATATATGGACATTTACTCC 59.573 38.462 14.51 0.00 0.00 3.85
3487 5285 5.488341 ACGCATATATGGACATTTACTCCC 58.512 41.667 14.51 0.00 0.00 4.30
3488 5286 5.248477 ACGCATATATGGACATTTACTCCCT 59.752 40.000 14.51 0.00 0.00 4.20
3489 5287 5.812642 CGCATATATGGACATTTACTCCCTC 59.187 44.000 14.51 0.00 0.00 4.30
3490 5288 6.116126 GCATATATGGACATTTACTCCCTCC 58.884 44.000 14.51 0.00 0.00 4.30
3491 5289 4.891992 ATATGGACATTTACTCCCTCCG 57.108 45.455 0.00 0.00 0.00 4.63
3492 5290 1.946984 TGGACATTTACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
3493 5291 2.262637 TGGACATTTACTCCCTCCGTT 58.737 47.619 0.00 0.00 0.00 4.44
3494 5292 2.235402 TGGACATTTACTCCCTCCGTTC 59.765 50.000 0.00 0.00 0.00 3.95
3495 5293 2.419713 GGACATTTACTCCCTCCGTTCC 60.420 54.545 0.00 0.00 0.00 3.62
3496 5294 2.500504 GACATTTACTCCCTCCGTTCCT 59.499 50.000 0.00 0.00 0.00 3.36
3497 5295 3.703052 GACATTTACTCCCTCCGTTCCTA 59.297 47.826 0.00 0.00 0.00 2.94
3498 5296 4.098894 ACATTTACTCCCTCCGTTCCTAA 58.901 43.478 0.00 0.00 0.00 2.69
3499 5297 4.533311 ACATTTACTCCCTCCGTTCCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
3500 5298 5.191124 ACATTTACTCCCTCCGTTCCTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
3501 5299 6.384886 ACATTTACTCCCTCCGTTCCTAAATA 59.615 38.462 0.00 0.00 0.00 1.40
3502 5300 6.872585 TTTACTCCCTCCGTTCCTAAATAA 57.127 37.500 0.00 0.00 0.00 1.40
3503 5301 7.441903 TTTACTCCCTCCGTTCCTAAATAAT 57.558 36.000 0.00 0.00 0.00 1.28
3504 5302 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
3505 5303 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
3506 5304 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
3507 5305 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
3508 5306 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
3509 5307 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
3510 5308 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
3511 5309 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
3512 5310 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
3513 5311 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
3514 5312 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
3515 5313 8.336080 CCGTTCCTAAATAATTGTCTTTCTAGC 58.664 37.037 0.00 0.00 0.00 3.42
3516 5314 8.336080 CGTTCCTAAATAATTGTCTTTCTAGCC 58.664 37.037 0.00 0.00 0.00 3.93
3517 5315 9.174166 GTTCCTAAATAATTGTCTTTCTAGCCA 57.826 33.333 0.00 0.00 0.00 4.75
3518 5316 9.920946 TTCCTAAATAATTGTCTTTCTAGCCAT 57.079 29.630 0.00 0.00 0.00 4.40
3519 5317 9.561069 TCCTAAATAATTGTCTTTCTAGCCATC 57.439 33.333 0.00 0.00 0.00 3.51
3520 5318 9.566432 CCTAAATAATTGTCTTTCTAGCCATCT 57.434 33.333 0.00 0.00 0.00 2.90
3523 5321 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
3524 5322 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
3525 5323 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
3526 5324 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
3527 5325 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
3528 5326 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
3529 5327 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
3530 5328 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
3531 5329 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
3532 5330 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
3533 5331 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
3534 5332 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
3535 5333 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
3536 5334 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
3537 5335 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
3538 5336 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
3539 5337 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
3540 5338 6.018751 CCATCTCAAATGGACTACAACATACG 60.019 42.308 0.00 0.00 41.64 3.06
3541 5339 5.416083 TCTCAAATGGACTACAACATACGG 58.584 41.667 0.00 0.00 0.00 4.02
3542 5340 5.186215 TCTCAAATGGACTACAACATACGGA 59.814 40.000 0.00 0.00 0.00 4.69
3543 5341 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
3544 5342 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
3546 5344 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
3547 5345 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
3562 5360 9.692749 ATACGGATGTATGTAGACATGTTTTAG 57.307 33.333 0.00 0.00 40.18 1.85
3563 5361 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
3564 5362 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
3565 5363 7.921214 CGGATGTATGTAGACATGTTTTAGAGT 59.079 37.037 0.00 0.00 40.18 3.24
3566 5364 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
3567 5365 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
3573 5371 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
3574 5372 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
3575 5373 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
3586 5384 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3587 5385 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3588 5386 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3589 5387 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3590 5388 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3591 5389 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3592 5390 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3593 5391 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3594 5392 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3595 5393 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3596 5394 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3597 5395 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3598 5396 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3599 5397 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3600 5398 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3601 5399 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3602 5400 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3603 5401 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3604 5402 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3605 5403 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3606 5404 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3607 5405 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3608 5406 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3609 5407 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3610 5408 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3611 5409 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3612 5410 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3613 5411 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3614 5412 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3615 5413 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3616 5414 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3617 5415 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3618 5416 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3619 5417 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3620 5418 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3621 5419 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3622 5420 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3623 5421 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3624 5422 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
3640 5438 8.947115 AGAAAGACAATTATTTAGGAACGAAGG 58.053 33.333 0.00 0.00 0.00 3.46
3641 5439 7.625828 AAGACAATTATTTAGGAACGAAGGG 57.374 36.000 0.00 0.00 0.00 3.95
3642 5440 6.954232 AGACAATTATTTAGGAACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
3643 5441 7.048512 AGACAATTATTTAGGAACGAAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
3644 5442 6.718294 ACAATTATTTAGGAACGAAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
3645 5443 7.854337 ACAATTATTTAGGAACGAAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
3646 5444 7.985752 ACAATTATTTAGGAACGAAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
3647 5445 7.909485 ATTATTTAGGAACGAAGGGAGTAGA 57.091 36.000 0.00 0.00 0.00 2.59
3648 5446 7.909485 TTATTTAGGAACGAAGGGAGTAGAT 57.091 36.000 0.00 0.00 0.00 1.98
3649 5447 9.597681 ATTATTTAGGAACGAAGGGAGTAGATA 57.402 33.333 0.00 0.00 0.00 1.98
3650 5448 6.705863 TTTAGGAACGAAGGGAGTAGATAC 57.294 41.667 0.00 0.00 0.00 2.24
3651 5449 3.212685 AGGAACGAAGGGAGTAGATACG 58.787 50.000 0.00 0.00 0.00 3.06
3652 5450 3.118112 AGGAACGAAGGGAGTAGATACGA 60.118 47.826 0.00 0.00 0.00 3.43
3653 5451 3.629398 GGAACGAAGGGAGTAGATACGAA 59.371 47.826 0.00 0.00 0.00 3.85
3654 5452 4.096984 GGAACGAAGGGAGTAGATACGAAA 59.903 45.833 0.00 0.00 0.00 3.46
3655 5453 5.393461 GGAACGAAGGGAGTAGATACGAAAA 60.393 44.000 0.00 0.00 0.00 2.29
3656 5454 5.649782 ACGAAGGGAGTAGATACGAAAAA 57.350 39.130 0.00 0.00 0.00 1.94
3673 5471 0.958822 AAAAAGCGTTGCTGTAGGGG 59.041 50.000 0.00 0.00 39.62 4.79
3674 5472 0.893727 AAAAGCGTTGCTGTAGGGGG 60.894 55.000 0.00 0.00 39.62 5.40
3690 5488 1.002502 GGGGGTCCTGTTGTAGTGC 60.003 63.158 0.00 0.00 0.00 4.40
3691 5489 1.002502 GGGGTCCTGTTGTAGTGCC 60.003 63.158 0.00 0.00 0.00 5.01
3692 5490 1.002502 GGGTCCTGTTGTAGTGCCC 60.003 63.158 0.00 0.00 33.29 5.36
3693 5491 1.002502 GGTCCTGTTGTAGTGCCCC 60.003 63.158 0.00 0.00 0.00 5.80
3694 5492 1.489560 GGTCCTGTTGTAGTGCCCCT 61.490 60.000 0.00 0.00 0.00 4.79
3695 5493 0.036294 GTCCTGTTGTAGTGCCCCTC 60.036 60.000 0.00 0.00 0.00 4.30
3696 5494 1.198759 TCCTGTTGTAGTGCCCCTCC 61.199 60.000 0.00 0.00 0.00 4.30
3697 5495 1.201429 CCTGTTGTAGTGCCCCTCCT 61.201 60.000 0.00 0.00 0.00 3.69
3698 5496 0.250513 CTGTTGTAGTGCCCCTCCTC 59.749 60.000 0.00 0.00 0.00 3.71
3699 5497 1.198759 TGTTGTAGTGCCCCTCCTCC 61.199 60.000 0.00 0.00 0.00 4.30
3700 5498 1.159905 TTGTAGTGCCCCTCCTCCA 59.840 57.895 0.00 0.00 0.00 3.86
3701 5499 0.474854 TTGTAGTGCCCCTCCTCCAA 60.475 55.000 0.00 0.00 0.00 3.53
3702 5500 0.909610 TGTAGTGCCCCTCCTCCAAG 60.910 60.000 0.00 0.00 0.00 3.61
3703 5501 0.617820 GTAGTGCCCCTCCTCCAAGA 60.618 60.000 0.00 0.00 0.00 3.02
3704 5502 0.343372 TAGTGCCCCTCCTCCAAGAT 59.657 55.000 0.00 0.00 0.00 2.40
3705 5503 1.225704 GTGCCCCTCCTCCAAGATG 59.774 63.158 0.00 0.00 0.00 2.90
3706 5504 2.194326 GCCCCTCCTCCAAGATGC 59.806 66.667 0.00 0.00 0.00 3.91
3707 5505 2.922234 CCCCTCCTCCAAGATGCC 59.078 66.667 0.00 0.00 0.00 4.40
3708 5506 2.761465 CCCCTCCTCCAAGATGCCC 61.761 68.421 0.00 0.00 0.00 5.36
3709 5507 2.761465 CCCTCCTCCAAGATGCCCC 61.761 68.421 0.00 0.00 0.00 5.80
3710 5508 2.507944 CTCCTCCAAGATGCCCCG 59.492 66.667 0.00 0.00 0.00 5.73
3711 5509 3.764160 CTCCTCCAAGATGCCCCGC 62.764 68.421 0.00 0.00 0.00 6.13
3712 5510 4.883354 CCTCCAAGATGCCCCGCC 62.883 72.222 0.00 0.00 0.00 6.13
3713 5511 4.883354 CTCCAAGATGCCCCGCCC 62.883 72.222 0.00 0.00 0.00 6.13
3724 5522 3.507713 CCCGCCCCACCCCATTAT 61.508 66.667 0.00 0.00 0.00 1.28
3725 5523 2.157452 CCCGCCCCACCCCATTATA 61.157 63.158 0.00 0.00 0.00 0.98
3726 5524 1.506028 CCCGCCCCACCCCATTATAT 61.506 60.000 0.00 0.00 0.00 0.86
3727 5525 1.291109 CCGCCCCACCCCATTATATA 58.709 55.000 0.00 0.00 0.00 0.86
3728 5526 1.064979 CCGCCCCACCCCATTATATAC 60.065 57.143 0.00 0.00 0.00 1.47
3729 5527 1.406341 CGCCCCACCCCATTATATACG 60.406 57.143 0.00 0.00 0.00 3.06
3730 5528 1.680860 GCCCCACCCCATTATATACGC 60.681 57.143 0.00 0.00 0.00 4.42
3731 5529 1.913419 CCCCACCCCATTATATACGCT 59.087 52.381 0.00 0.00 0.00 5.07
3732 5530 2.355716 CCCCACCCCATTATATACGCTG 60.356 54.545 0.00 0.00 0.00 5.18
3733 5531 2.356135 CCACCCCATTATATACGCTGC 58.644 52.381 0.00 0.00 0.00 5.25
3734 5532 2.356135 CACCCCATTATATACGCTGCC 58.644 52.381 0.00 0.00 0.00 4.85
3735 5533 1.982226 ACCCCATTATATACGCTGCCA 59.018 47.619 0.00 0.00 0.00 4.92
3736 5534 2.290071 ACCCCATTATATACGCTGCCAC 60.290 50.000 0.00 0.00 0.00 5.01
3737 5535 2.356135 CCCATTATATACGCTGCCACC 58.644 52.381 0.00 0.00 0.00 4.61
3738 5536 2.356135 CCATTATATACGCTGCCACCC 58.644 52.381 0.00 0.00 0.00 4.61
3739 5537 2.356135 CATTATATACGCTGCCACCCC 58.644 52.381 0.00 0.00 0.00 4.95
3740 5538 0.688487 TTATATACGCTGCCACCCCC 59.312 55.000 0.00 0.00 0.00 5.40
3741 5539 1.537814 TATATACGCTGCCACCCCCG 61.538 60.000 0.00 0.00 0.00 5.73
3783 5581 4.430765 CCGTAGCCGTCGCCACTT 62.431 66.667 0.00 0.00 34.57 3.16
3784 5582 3.179265 CGTAGCCGTCGCCACTTG 61.179 66.667 0.00 0.00 34.57 3.16
3785 5583 3.488090 GTAGCCGTCGCCACTTGC 61.488 66.667 0.00 0.00 34.57 4.01
3794 5592 3.804193 GCCACTTGCGCTAGCCAC 61.804 66.667 18.90 1.87 44.33 5.01
3795 5593 3.127533 CCACTTGCGCTAGCCACC 61.128 66.667 18.90 0.00 44.33 4.61
3796 5594 3.490759 CACTTGCGCTAGCCACCG 61.491 66.667 18.90 4.92 44.33 4.94
3965 5763 4.538746 TTTTTCAGGTTCACCGGTTTTT 57.461 36.364 2.97 0.00 42.08 1.94
3966 5764 3.786516 TTTCAGGTTCACCGGTTTTTC 57.213 42.857 2.97 0.00 42.08 2.29
3967 5765 2.721425 TCAGGTTCACCGGTTTTTCT 57.279 45.000 2.97 0.00 42.08 2.52
3968 5766 2.567985 TCAGGTTCACCGGTTTTTCTC 58.432 47.619 2.97 0.00 42.08 2.87
3969 5767 1.263217 CAGGTTCACCGGTTTTTCTCG 59.737 52.381 2.97 0.00 42.08 4.04
3976 5774 2.963498 CCGGTTTTTCTCGGTTCTTC 57.037 50.000 0.00 0.00 41.23 2.87
3977 5775 2.490991 CCGGTTTTTCTCGGTTCTTCT 58.509 47.619 0.00 0.00 41.23 2.85
3978 5776 3.656559 CCGGTTTTTCTCGGTTCTTCTA 58.343 45.455 0.00 0.00 41.23 2.10
3979 5777 3.678548 CCGGTTTTTCTCGGTTCTTCTAG 59.321 47.826 0.00 0.00 41.23 2.43
3980 5778 4.304939 CGGTTTTTCTCGGTTCTTCTAGT 58.695 43.478 0.00 0.00 0.00 2.57
3981 5779 4.748600 CGGTTTTTCTCGGTTCTTCTAGTT 59.251 41.667 0.00 0.00 0.00 2.24
3982 5780 5.922544 CGGTTTTTCTCGGTTCTTCTAGTTA 59.077 40.000 0.00 0.00 0.00 2.24
3983 5781 6.089150 CGGTTTTTCTCGGTTCTTCTAGTTAG 59.911 42.308 0.00 0.00 0.00 2.34
3984 5782 6.128607 GGTTTTTCTCGGTTCTTCTAGTTAGC 60.129 42.308 0.00 0.00 0.00 3.09
3985 5783 4.352600 TTCTCGGTTCTTCTAGTTAGCG 57.647 45.455 0.00 0.00 0.00 4.26
3986 5784 2.681848 TCTCGGTTCTTCTAGTTAGCGG 59.318 50.000 0.00 0.00 32.86 5.52
3987 5785 1.747355 TCGGTTCTTCTAGTTAGCGGG 59.253 52.381 0.00 0.00 32.86 6.13
3988 5786 1.801765 CGGTTCTTCTAGTTAGCGGGC 60.802 57.143 0.00 0.00 0.00 6.13
3989 5787 1.557651 GTTCTTCTAGTTAGCGGGCG 58.442 55.000 0.00 0.00 0.00 6.13
3990 5788 1.135170 GTTCTTCTAGTTAGCGGGCGT 60.135 52.381 0.00 0.00 0.00 5.68
3991 5789 1.180029 TCTTCTAGTTAGCGGGCGTT 58.820 50.000 0.00 0.00 0.00 4.84
3992 5790 1.133790 TCTTCTAGTTAGCGGGCGTTC 59.866 52.381 0.00 0.00 0.00 3.95
3993 5791 0.179156 TTCTAGTTAGCGGGCGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
3994 5792 1.138247 CTAGTTAGCGGGCGTTCGT 59.862 57.895 2.03 0.00 0.00 3.85
3995 5793 0.864797 CTAGTTAGCGGGCGTTCGTC 60.865 60.000 2.03 0.00 0.00 4.20
3996 5794 2.270297 TAGTTAGCGGGCGTTCGTCC 62.270 60.000 5.73 5.73 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.322322 TGGCGGCGTATATAAAGGGG 59.678 55.000 9.37 0.00 0.00 4.79
1 2 1.435577 GTGGCGGCGTATATAAAGGG 58.564 55.000 9.37 0.00 0.00 3.95
2 3 1.435577 GGTGGCGGCGTATATAAAGG 58.564 55.000 9.37 0.00 0.00 3.11
3 4 1.435577 GGGTGGCGGCGTATATAAAG 58.564 55.000 9.37 0.00 0.00 1.85
4 5 0.035176 GGGGTGGCGGCGTATATAAA 59.965 55.000 9.37 0.00 0.00 1.40
5 6 1.672898 GGGGTGGCGGCGTATATAA 59.327 57.895 9.37 0.00 0.00 0.98
6 7 2.285024 GGGGGTGGCGGCGTATATA 61.285 63.158 9.37 0.00 0.00 0.86
7 8 3.633116 GGGGGTGGCGGCGTATAT 61.633 66.667 9.37 0.00 0.00 0.86
14 15 3.622060 CTTGTAGTGGGGGTGGCGG 62.622 68.421 0.00 0.00 0.00 6.13
15 16 2.046314 CTTGTAGTGGGGGTGGCG 60.046 66.667 0.00 0.00 0.00 5.69
16 17 0.331616 ATTCTTGTAGTGGGGGTGGC 59.668 55.000 0.00 0.00 0.00 5.01
17 18 2.092592 GGTATTCTTGTAGTGGGGGTGG 60.093 54.545 0.00 0.00 0.00 4.61
18 19 2.092592 GGGTATTCTTGTAGTGGGGGTG 60.093 54.545 0.00 0.00 0.00 4.61
19 20 2.202707 GGGTATTCTTGTAGTGGGGGT 58.797 52.381 0.00 0.00 0.00 4.95
20 21 1.493446 GGGGTATTCTTGTAGTGGGGG 59.507 57.143 0.00 0.00 0.00 5.40
21 22 1.493446 GGGGGTATTCTTGTAGTGGGG 59.507 57.143 0.00 0.00 0.00 4.96
22 23 2.488836 AGGGGGTATTCTTGTAGTGGG 58.511 52.381 0.00 0.00 0.00 4.61
23 24 7.383156 TTTATAGGGGGTATTCTTGTAGTGG 57.617 40.000 0.00 0.00 0.00 4.00
103 104 6.595326 ACGCATATGCTACAATGCTTATATGT 59.405 34.615 24.56 6.98 45.03 2.29
104 105 7.008440 ACGCATATGCTACAATGCTTATATG 57.992 36.000 24.56 6.36 45.03 1.78
205 210 0.606604 TTGTCGACAGGGAAGCCTAC 59.393 55.000 19.11 0.00 0.00 3.18
220 225 3.316868 CGAGAGGAATAGAGGAGGTTGTC 59.683 52.174 0.00 0.00 0.00 3.18
640 649 8.846211 TCTACTATACCTGCAAAATAAATTGGC 58.154 33.333 0.00 0.00 0.00 4.52
736 745 3.748568 GCTTGTTGGAGTAGAGTTTGAGG 59.251 47.826 0.00 0.00 0.00 3.86
812 821 2.617021 GGGCTCAACGTAAGGGAATCAA 60.617 50.000 0.00 0.00 46.39 2.57
813 822 1.065709 GGGCTCAACGTAAGGGAATCA 60.066 52.381 0.00 0.00 46.39 2.57
814 823 1.664873 GGGCTCAACGTAAGGGAATC 58.335 55.000 0.00 0.00 46.39 2.52
815 824 0.255033 GGGGCTCAACGTAAGGGAAT 59.745 55.000 0.00 0.00 46.39 3.01
816 825 1.128809 TGGGGCTCAACGTAAGGGAA 61.129 55.000 0.00 0.00 46.39 3.97
817 826 1.128809 TTGGGGCTCAACGTAAGGGA 61.129 55.000 0.00 0.00 46.39 4.20
818 827 0.250989 TTTGGGGCTCAACGTAAGGG 60.251 55.000 0.00 0.00 46.39 3.95
819 828 1.165270 CTTTGGGGCTCAACGTAAGG 58.835 55.000 0.00 0.00 46.39 2.69
820 829 2.814716 GGCTTTGGGGCTCAACGTAAG 61.815 57.143 0.00 0.00 39.75 2.34
821 830 0.891904 GGCTTTGGGGCTCAACGTAA 60.892 55.000 0.00 0.00 34.67 3.18
822 831 1.302993 GGCTTTGGGGCTCAACGTA 60.303 57.895 0.00 0.00 34.67 3.57
823 832 2.597510 GGCTTTGGGGCTCAACGT 60.598 61.111 0.00 0.00 34.67 3.99
830 839 2.031870 CCTTGTATTAGGCTTTGGGGC 58.968 52.381 0.00 0.00 41.20 5.80
831 840 3.382083 ACCTTGTATTAGGCTTTGGGG 57.618 47.619 0.00 0.00 38.99 4.96
1030 1039 9.490379 AACAGGAGTGTAAAGTAATTTCAGTAG 57.510 33.333 0.00 0.00 35.08 2.57
1094 1103 1.942657 GAACTGCAGCACAAGAAGACA 59.057 47.619 15.27 0.00 0.00 3.41
1607 2663 5.980116 GTGTATCAAGCATCACTACAGTAGG 59.020 44.000 12.42 1.58 0.00 3.18
1825 3252 2.964740 TGGAGAAGACTGCTTGAATCG 58.035 47.619 0.00 0.00 35.49 3.34
2346 3876 8.397215 GCTGAAACAAAGCAATCAAAATTTTT 57.603 26.923 0.00 0.00 40.52 1.94
2658 4204 4.615961 CGACTTCGTACCAAGACTTAAGTG 59.384 45.833 14.14 0.54 34.11 3.16
2898 4528 7.454260 AAACATCCATCATCATCATCATCAG 57.546 36.000 0.00 0.00 0.00 2.90
3483 5281 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3484 5282 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3485 5283 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3486 5284 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3487 5285 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3488 5286 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3489 5287 8.336080 GCTAGAAAGACAATTATTTAGGAACGG 58.664 37.037 0.00 0.00 0.00 4.44
3490 5288 8.336080 GGCTAGAAAGACAATTATTTAGGAACG 58.664 37.037 0.00 0.00 0.00 3.95
3491 5289 9.174166 TGGCTAGAAAGACAATTATTTAGGAAC 57.826 33.333 0.00 0.00 38.01 3.62
3492 5290 9.920946 ATGGCTAGAAAGACAATTATTTAGGAA 57.079 29.630 0.00 0.00 46.32 3.36
3493 5291 9.561069 GATGGCTAGAAAGACAATTATTTAGGA 57.439 33.333 0.00 0.00 46.32 2.94
3494 5292 9.566432 AGATGGCTAGAAAGACAATTATTTAGG 57.434 33.333 0.00 0.00 46.32 2.69
3497 5295 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
3498 5296 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
3499 5297 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
3500 5298 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
3501 5299 7.147949 CCATTTGAGATGGCTAGAAAGACAATT 60.148 37.037 0.00 0.00 46.32 2.32
3502 5300 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
3503 5301 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
3505 5303 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
3506 5304 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
3507 5305 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
3508 5306 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
3509 5307 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
3510 5308 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
3511 5309 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
3512 5310 5.045942 TGTTGTAGTCCATTTGAGATGGCTA 60.046 40.000 0.00 0.33 39.01 3.93
3513 5311 4.263462 TGTTGTAGTCCATTTGAGATGGCT 60.263 41.667 0.00 1.24 39.01 4.75
3514 5312 4.009675 TGTTGTAGTCCATTTGAGATGGC 58.990 43.478 0.00 0.00 39.01 4.40
3515 5313 6.018751 CGTATGTTGTAGTCCATTTGAGATGG 60.019 42.308 0.00 0.00 40.48 3.51
3516 5314 6.018751 CCGTATGTTGTAGTCCATTTGAGATG 60.019 42.308 0.00 0.00 0.00 2.90
3517 5315 6.049149 CCGTATGTTGTAGTCCATTTGAGAT 58.951 40.000 0.00 0.00 0.00 2.75
3518 5316 5.186215 TCCGTATGTTGTAGTCCATTTGAGA 59.814 40.000 0.00 0.00 0.00 3.27
3519 5317 5.416083 TCCGTATGTTGTAGTCCATTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
3520 5318 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
3521 5319 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
3522 5320 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
3523 5321 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
3524 5322 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
3525 5323 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
3536 5334 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
3537 5335 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
3538 5336 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
3539 5337 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
3540 5338 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
3541 5339 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
3547 5345 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
3548 5346 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
3549 5347 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
3550 5348 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
3551 5349 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
3564 5362 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3565 5363 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3566 5364 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3567 5365 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3568 5366 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3569 5367 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3570 5368 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3571 5369 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3572 5370 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3573 5371 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3574 5372 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3575 5373 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3576 5374 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3577 5375 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3578 5376 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3579 5377 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3580 5378 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3581 5379 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3582 5380 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3583 5381 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3584 5382 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3585 5383 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3586 5384 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3587 5385 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3588 5386 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3590 5388 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3591 5389 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3592 5390 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3593 5391 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3594 5392 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3595 5393 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3596 5394 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3597 5395 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3598 5396 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3614 5412 8.947115 CCTTCGTTCCTAAATAATTGTCTTTCT 58.053 33.333 0.00 0.00 0.00 2.52
3615 5413 8.182227 CCCTTCGTTCCTAAATAATTGTCTTTC 58.818 37.037 0.00 0.00 0.00 2.62
3616 5414 7.886446 TCCCTTCGTTCCTAAATAATTGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
3617 5415 7.399634 TCCCTTCGTTCCTAAATAATTGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
3618 5416 6.954232 TCCCTTCGTTCCTAAATAATTGTCT 58.046 36.000 0.00 0.00 0.00 3.41
3619 5417 6.822170 ACTCCCTTCGTTCCTAAATAATTGTC 59.178 38.462 0.00 0.00 0.00 3.18
3620 5418 6.718294 ACTCCCTTCGTTCCTAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
3621 5419 8.202137 TCTACTCCCTTCGTTCCTAAATAATTG 58.798 37.037 0.00 0.00 0.00 2.32
3622 5420 8.315220 TCTACTCCCTTCGTTCCTAAATAATT 57.685 34.615 0.00 0.00 0.00 1.40
3623 5421 7.909485 TCTACTCCCTTCGTTCCTAAATAAT 57.091 36.000 0.00 0.00 0.00 1.28
3624 5422 7.909485 ATCTACTCCCTTCGTTCCTAAATAA 57.091 36.000 0.00 0.00 0.00 1.40
3625 5423 7.173907 CGTATCTACTCCCTTCGTTCCTAAATA 59.826 40.741 0.00 0.00 0.00 1.40
3626 5424 6.016443 CGTATCTACTCCCTTCGTTCCTAAAT 60.016 42.308 0.00 0.00 0.00 1.40
3627 5425 5.297776 CGTATCTACTCCCTTCGTTCCTAAA 59.702 44.000 0.00 0.00 0.00 1.85
3628 5426 4.818546 CGTATCTACTCCCTTCGTTCCTAA 59.181 45.833 0.00 0.00 0.00 2.69
3629 5427 4.101585 TCGTATCTACTCCCTTCGTTCCTA 59.898 45.833 0.00 0.00 0.00 2.94
3630 5428 3.118112 TCGTATCTACTCCCTTCGTTCCT 60.118 47.826 0.00 0.00 0.00 3.36
3631 5429 3.209410 TCGTATCTACTCCCTTCGTTCC 58.791 50.000 0.00 0.00 0.00 3.62
3632 5430 4.889832 TTCGTATCTACTCCCTTCGTTC 57.110 45.455 0.00 0.00 0.00 3.95
3633 5431 5.649782 TTTTCGTATCTACTCCCTTCGTT 57.350 39.130 0.00 0.00 0.00 3.85
3634 5432 5.649782 TTTTTCGTATCTACTCCCTTCGT 57.350 39.130 0.00 0.00 0.00 3.85
3654 5452 0.958822 CCCCTACAGCAACGCTTTTT 59.041 50.000 0.00 0.00 36.40 1.94
3655 5453 0.893727 CCCCCTACAGCAACGCTTTT 60.894 55.000 0.00 0.00 36.40 2.27
3656 5454 1.303317 CCCCCTACAGCAACGCTTT 60.303 57.895 0.00 0.00 36.40 3.51
3657 5455 2.351276 CCCCCTACAGCAACGCTT 59.649 61.111 0.00 0.00 36.40 4.68
3672 5470 1.002502 GCACTACAACAGGACCCCC 60.003 63.158 0.00 0.00 0.00 5.40
3673 5471 1.002502 GGCACTACAACAGGACCCC 60.003 63.158 0.00 0.00 0.00 4.95
3674 5472 1.002502 GGGCACTACAACAGGACCC 60.003 63.158 0.00 0.00 36.62 4.46
3675 5473 1.002502 GGGGCACTACAACAGGACC 60.003 63.158 0.00 0.00 0.00 4.46
3676 5474 0.036294 GAGGGGCACTACAACAGGAC 60.036 60.000 0.00 0.00 0.00 3.85
3677 5475 1.198759 GGAGGGGCACTACAACAGGA 61.199 60.000 0.00 0.00 0.00 3.86
3678 5476 1.201429 AGGAGGGGCACTACAACAGG 61.201 60.000 0.00 0.00 29.75 4.00
3679 5477 0.250513 GAGGAGGGGCACTACAACAG 59.749 60.000 0.00 0.00 29.75 3.16
3680 5478 1.198759 GGAGGAGGGGCACTACAACA 61.199 60.000 0.00 0.00 29.75 3.33
3681 5479 1.198759 TGGAGGAGGGGCACTACAAC 61.199 60.000 0.00 0.00 29.75 3.32
3682 5480 0.474854 TTGGAGGAGGGGCACTACAA 60.475 55.000 0.00 0.00 35.26 2.41
3683 5481 0.909610 CTTGGAGGAGGGGCACTACA 60.910 60.000 0.00 0.00 29.75 2.74
3684 5482 0.617820 TCTTGGAGGAGGGGCACTAC 60.618 60.000 0.00 0.00 0.00 2.73
3685 5483 0.343372 ATCTTGGAGGAGGGGCACTA 59.657 55.000 0.00 0.00 0.00 2.74
3686 5484 1.083706 ATCTTGGAGGAGGGGCACT 59.916 57.895 0.00 0.00 0.00 4.40
3687 5485 1.225704 CATCTTGGAGGAGGGGCAC 59.774 63.158 0.00 0.00 0.00 5.01
3688 5486 2.683465 GCATCTTGGAGGAGGGGCA 61.683 63.158 0.00 0.00 0.00 5.36
3689 5487 2.194326 GCATCTTGGAGGAGGGGC 59.806 66.667 0.00 0.00 0.00 5.80
3690 5488 2.761465 GGGCATCTTGGAGGAGGGG 61.761 68.421 0.00 0.00 0.00 4.79
3691 5489 2.761465 GGGGCATCTTGGAGGAGGG 61.761 68.421 0.00 0.00 0.00 4.30
3692 5490 2.922234 GGGGCATCTTGGAGGAGG 59.078 66.667 0.00 0.00 0.00 4.30
3693 5491 2.507944 CGGGGCATCTTGGAGGAG 59.492 66.667 0.00 0.00 0.00 3.69
3694 5492 3.797353 GCGGGGCATCTTGGAGGA 61.797 66.667 0.00 0.00 0.00 3.71
3695 5493 4.883354 GGCGGGGCATCTTGGAGG 62.883 72.222 0.00 0.00 0.00 4.30
3696 5494 4.883354 GGGCGGGGCATCTTGGAG 62.883 72.222 0.00 0.00 0.00 3.86
3707 5505 1.506028 ATATAATGGGGTGGGGCGGG 61.506 60.000 0.00 0.00 0.00 6.13
3708 5506 1.064979 GTATATAATGGGGTGGGGCGG 60.065 57.143 0.00 0.00 0.00 6.13
3709 5507 1.406341 CGTATATAATGGGGTGGGGCG 60.406 57.143 0.00 0.00 0.00 6.13
3710 5508 1.680860 GCGTATATAATGGGGTGGGGC 60.681 57.143 0.00 0.00 0.00 5.80
3711 5509 1.913419 AGCGTATATAATGGGGTGGGG 59.087 52.381 0.00 0.00 0.00 4.96
3712 5510 2.939640 GCAGCGTATATAATGGGGTGGG 60.940 54.545 0.00 0.00 0.00 4.61
3713 5511 2.356135 GCAGCGTATATAATGGGGTGG 58.644 52.381 0.00 0.00 0.00 4.61
3714 5512 2.290008 TGGCAGCGTATATAATGGGGTG 60.290 50.000 0.00 0.00 0.00 4.61
3715 5513 1.982226 TGGCAGCGTATATAATGGGGT 59.018 47.619 0.00 0.00 0.00 4.95
3716 5514 2.356135 GTGGCAGCGTATATAATGGGG 58.644 52.381 0.00 0.00 0.00 4.96
3717 5515 2.356135 GGTGGCAGCGTATATAATGGG 58.644 52.381 0.00 0.00 0.00 4.00
3718 5516 2.356135 GGGTGGCAGCGTATATAATGG 58.644 52.381 10.99 0.00 0.00 3.16
3719 5517 2.356135 GGGGTGGCAGCGTATATAATG 58.644 52.381 10.99 0.00 0.00 1.90
3720 5518 1.280998 GGGGGTGGCAGCGTATATAAT 59.719 52.381 10.99 0.00 0.00 1.28
3721 5519 0.688487 GGGGGTGGCAGCGTATATAA 59.312 55.000 10.99 0.00 0.00 0.98
3722 5520 1.537814 CGGGGGTGGCAGCGTATATA 61.538 60.000 10.99 0.00 0.00 0.86
3723 5521 2.879233 CGGGGGTGGCAGCGTATAT 61.879 63.158 10.99 0.00 0.00 0.86
3724 5522 3.542676 CGGGGGTGGCAGCGTATA 61.543 66.667 10.99 0.00 0.00 1.47
3777 5575 3.804193 GTGGCTAGCGCAAGTGGC 61.804 66.667 11.47 9.36 38.10 5.01
3778 5576 3.127533 GGTGGCTAGCGCAAGTGG 61.128 66.667 11.47 0.00 38.10 4.00
3779 5577 3.490759 CGGTGGCTAGCGCAAGTG 61.491 66.667 11.47 0.00 41.20 3.16
3854 5652 3.432051 CTACCTCCGGCAAGGCGAG 62.432 68.421 17.95 12.00 40.34 5.03
3855 5653 3.458163 CTACCTCCGGCAAGGCGA 61.458 66.667 17.95 3.07 40.34 5.54
3856 5654 3.718210 GACTACCTCCGGCAAGGCG 62.718 68.421 9.11 9.22 40.34 5.52
3857 5655 2.187163 GACTACCTCCGGCAAGGC 59.813 66.667 9.11 0.00 40.34 4.35
3858 5656 2.494918 CGACTACCTCCGGCAAGG 59.505 66.667 7.65 7.65 42.55 3.61
3859 5657 2.202756 GCGACTACCTCCGGCAAG 60.203 66.667 0.00 0.00 0.00 4.01
3864 5662 3.885521 GTCCGGCGACTACCTCCG 61.886 72.222 9.30 0.00 42.58 4.63
3944 5742 4.221041 AGAAAAACCGGTGAACCTGAAAAA 59.779 37.500 8.52 0.00 0.00 1.94
3945 5743 3.764972 AGAAAAACCGGTGAACCTGAAAA 59.235 39.130 8.52 0.00 0.00 2.29
3946 5744 3.358118 AGAAAAACCGGTGAACCTGAAA 58.642 40.909 8.52 0.00 0.00 2.69
3947 5745 2.946990 GAGAAAAACCGGTGAACCTGAA 59.053 45.455 8.52 0.00 0.00 3.02
3948 5746 2.567985 GAGAAAAACCGGTGAACCTGA 58.432 47.619 8.52 0.00 0.00 3.86
3949 5747 1.263217 CGAGAAAAACCGGTGAACCTG 59.737 52.381 8.52 0.00 0.00 4.00
3950 5748 1.589803 CGAGAAAAACCGGTGAACCT 58.410 50.000 8.52 3.30 0.00 3.50
3951 5749 0.589708 CCGAGAAAAACCGGTGAACC 59.410 55.000 8.52 0.00 40.78 3.62
3958 5756 4.304939 ACTAGAAGAACCGAGAAAAACCG 58.695 43.478 0.00 0.00 0.00 4.44
3959 5757 6.128607 GCTAACTAGAAGAACCGAGAAAAACC 60.129 42.308 0.00 0.00 0.00 3.27
3960 5758 6.399775 CGCTAACTAGAAGAACCGAGAAAAAC 60.400 42.308 0.00 0.00 0.00 2.43
3961 5759 5.632347 CGCTAACTAGAAGAACCGAGAAAAA 59.368 40.000 0.00 0.00 0.00 1.94
3962 5760 5.159209 CGCTAACTAGAAGAACCGAGAAAA 58.841 41.667 0.00 0.00 0.00 2.29
3963 5761 4.380233 CCGCTAACTAGAAGAACCGAGAAA 60.380 45.833 0.00 0.00 0.00 2.52
3964 5762 3.128242 CCGCTAACTAGAAGAACCGAGAA 59.872 47.826 0.00 0.00 0.00 2.87
3965 5763 2.681848 CCGCTAACTAGAAGAACCGAGA 59.318 50.000 0.00 0.00 0.00 4.04
3966 5764 2.223525 CCCGCTAACTAGAAGAACCGAG 60.224 54.545 0.00 0.00 0.00 4.63
3967 5765 1.747355 CCCGCTAACTAGAAGAACCGA 59.253 52.381 0.00 0.00 0.00 4.69
3968 5766 1.801765 GCCCGCTAACTAGAAGAACCG 60.802 57.143 0.00 0.00 0.00 4.44
3969 5767 1.801765 CGCCCGCTAACTAGAAGAACC 60.802 57.143 0.00 0.00 0.00 3.62
3970 5768 1.135170 ACGCCCGCTAACTAGAAGAAC 60.135 52.381 0.00 0.00 0.00 3.01
3971 5769 1.180029 ACGCCCGCTAACTAGAAGAA 58.820 50.000 0.00 0.00 0.00 2.52
3972 5770 1.133790 GAACGCCCGCTAACTAGAAGA 59.866 52.381 0.00 0.00 0.00 2.87
3973 5771 1.557651 GAACGCCCGCTAACTAGAAG 58.442 55.000 0.00 0.00 0.00 2.85
3974 5772 0.179156 CGAACGCCCGCTAACTAGAA 60.179 55.000 0.00 0.00 0.00 2.10
3975 5773 1.308069 ACGAACGCCCGCTAACTAGA 61.308 55.000 0.00 0.00 0.00 2.43
3976 5774 0.864797 GACGAACGCCCGCTAACTAG 60.865 60.000 0.00 0.00 0.00 2.57
3977 5775 1.137404 GACGAACGCCCGCTAACTA 59.863 57.895 0.00 0.00 0.00 2.24
3978 5776 2.126189 GACGAACGCCCGCTAACT 60.126 61.111 0.00 0.00 0.00 2.24
3979 5777 3.184003 GGACGAACGCCCGCTAAC 61.184 66.667 0.00 0.00 0.00 2.34
3980 5778 4.781959 CGGACGAACGCCCGCTAA 62.782 66.667 9.06 0.00 39.22 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.