Multiple sequence alignment - TraesCS7A01G428500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G428500 chr7A 100.000 4516 0 0 1 4516 621910086 621914601 0.000000e+00 8340.0
1 TraesCS7A01G428500 chr7A 98.901 91 1 0 4425 4515 417818298 417818208 3.610000e-36 163.0
2 TraesCS7A01G428500 chr7A 90.265 113 10 1 4403 4515 691244414 691244303 3.640000e-31 147.0
3 TraesCS7A01G428500 chr7B 94.935 1856 85 8 488 2336 583922686 583924539 0.000000e+00 2898.0
4 TraesCS7A01G428500 chr7B 87.454 821 61 21 2909 3713 583925996 583926790 0.000000e+00 907.0
5 TraesCS7A01G428500 chr7B 93.043 460 27 3 2342 2801 583924651 583925105 0.000000e+00 667.0
6 TraesCS7A01G428500 chr7B 83.619 525 59 14 3901 4425 583930959 583931456 6.840000e-128 468.0
7 TraesCS7A01G428500 chr7B 84.868 152 17 2 38 185 583920224 583920373 1.010000e-31 148.0
8 TraesCS7A01G428500 chr7D 93.886 1750 71 11 603 2332 540616771 540618504 0.000000e+00 2606.0
9 TraesCS7A01G428500 chr7D 85.292 1625 123 50 2847 4425 540626801 540628355 0.000000e+00 1570.0
10 TraesCS7A01G428500 chr7D 92.473 465 27 4 2342 2803 540618615 540619074 0.000000e+00 658.0
11 TraesCS7A01G428500 chr2B 82.803 471 68 5 3959 4424 359933899 359933437 4.210000e-110 409.0
12 TraesCS7A01G428500 chr2A 84.615 234 29 4 3959 4191 388681275 388681502 4.550000e-55 226.0
13 TraesCS7A01G428500 chr5A 95.918 98 4 0 4418 4515 191042822 191042919 4.680000e-35 159.0
14 TraesCS7A01G428500 chr5A 93.458 107 6 1 4409 4515 458814403 458814508 1.680000e-34 158.0
15 TraesCS7A01G428500 chr5A 94.175 103 4 2 4414 4515 505034869 505034970 6.050000e-34 156.0
16 TraesCS7A01G428500 chr3D 76.737 331 48 15 4063 4366 126294641 126294313 1.680000e-34 158.0
17 TraesCS7A01G428500 chr1A 94.118 102 6 0 4414 4515 349119034 349119135 6.050000e-34 156.0
18 TraesCS7A01G428500 chr5B 92.593 108 6 2 4409 4515 309736469 309736575 2.180000e-33 154.0
19 TraesCS7A01G428500 chr5B 90.476 63 5 1 3067 3129 428999550 428999611 1.040000e-11 82.4
20 TraesCS7A01G428500 chr6A 89.916 119 9 3 4399 4515 493827092 493827209 2.810000e-32 150.0
21 TraesCS7A01G428500 chr1B 88.983 118 9 4 4400 4515 39697585 39697470 4.710000e-30 143.0
22 TraesCS7A01G428500 chr1B 79.286 140 18 6 3077 3213 190884692 190884823 2.240000e-13 87.9
23 TraesCS7A01G428500 chr4A 82.550 149 22 4 3959 4105 114532830 114532976 1.320000e-25 128.0
24 TraesCS7A01G428500 chr6D 80.292 137 24 3 3080 3213 160397184 160397320 2.870000e-17 100.0
25 TraesCS7A01G428500 chr4B 74.138 290 49 16 4089 4370 206775708 206775437 3.720000e-16 97.1
26 TraesCS7A01G428500 chr1D 78.710 155 25 4 3060 3213 126673635 126673782 3.720000e-16 97.1
27 TraesCS7A01G428500 chr6B 94.231 52 3 0 3088 3139 290590915 290590966 3.740000e-11 80.5
28 TraesCS7A01G428500 chr6B 94.231 52 3 0 3088 3139 290622726 290622777 3.740000e-11 80.5
29 TraesCS7A01G428500 chr6B 88.525 61 5 2 3087 3146 553406945 553406886 6.270000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G428500 chr7A 621910086 621914601 4515 False 8340 8340 100.0000 1 4516 1 chr7A.!!$F1 4515
1 TraesCS7A01G428500 chr7B 583920224 583926790 6566 False 1155 2898 90.0750 38 3713 4 chr7B.!!$F2 3675
2 TraesCS7A01G428500 chr7D 540616771 540619074 2303 False 1632 2606 93.1795 603 2803 2 chr7D.!!$F2 2200
3 TraesCS7A01G428500 chr7D 540626801 540628355 1554 False 1570 1570 85.2920 2847 4425 1 chr7D.!!$F1 1578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.107831 AAGCCTACGAGCACCACAAA 59.892 50.0 0.00 0.00 34.23 2.83 F
253 824 0.249911 CTCCCGCCAAGCTATGTACC 60.250 60.0 0.00 0.00 0.00 3.34 F
1008 3067 0.322277 CAGAAGCAGGCATGGTCACT 60.322 55.0 2.48 3.92 35.69 3.41 F
1732 3791 1.442526 CTATGCTGGAGGCGGCAAAG 61.443 60.0 13.08 6.47 45.43 2.77 F
2613 4826 1.048724 TGGGCGGAGATTCCTGGTAG 61.049 60.0 0.00 0.00 33.30 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 3688 1.070957 GCACGGGATAAGGTAGGCC 59.929 63.158 0.00 0.0 0.00 5.19 R
2040 4099 3.414700 CCGACCAGAACGCACAGC 61.415 66.667 0.00 0.0 0.00 4.40 R
2449 4659 0.320421 GCTAACTCGTGGTTCAGGCA 60.320 55.000 0.47 0.0 39.17 4.75 R
2640 4853 0.531974 AACAAGGCGCGTCTCTTTCA 60.532 50.000 16.36 0.0 0.00 2.69 R
3957 7011 0.179062 GATCTGCGTTGGAGATGCCT 60.179 55.000 5.51 0.0 39.64 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.775854 TTCATTGAACATTGGTTTTTGTATGAT 57.224 25.926 0.00 0.00 37.36 2.45
34 35 8.695456 ACATTGGTTTTTGTATGATATTCTCCC 58.305 33.333 0.00 0.00 0.00 4.30
35 36 8.917088 CATTGGTTTTTGTATGATATTCTCCCT 58.083 33.333 0.00 0.00 0.00 4.20
36 37 8.893563 TTGGTTTTTGTATGATATTCTCCCTT 57.106 30.769 0.00 0.00 0.00 3.95
48 49 9.950496 ATGATATTCTCCCTTGTGATAATACAC 57.050 33.333 0.00 0.00 40.68 2.90
50 51 4.054780 TCTCCCTTGTGATAATACACGC 57.945 45.455 0.00 0.00 42.86 5.34
51 52 3.449377 TCTCCCTTGTGATAATACACGCA 59.551 43.478 0.00 0.00 42.86 5.24
58 59 6.347644 CCTTGTGATAATACACGCACATATGG 60.348 42.308 7.80 0.00 42.86 2.74
71 72 4.201753 CGCACATATGGATATTGCAGCTAC 60.202 45.833 13.68 0.00 31.92 3.58
72 73 4.696877 GCACATATGGATATTGCAGCTACA 59.303 41.667 7.80 0.00 32.31 2.74
75 76 5.413833 ACATATGGATATTGCAGCTACAAGC 59.586 40.000 7.80 0.00 42.84 4.01
87 88 0.530744 CTACAAGCCTACGAGCACCA 59.469 55.000 0.00 0.00 34.23 4.17
89 90 1.005037 CAAGCCTACGAGCACCACA 60.005 57.895 0.00 0.00 34.23 4.17
91 92 0.107831 AAGCCTACGAGCACCACAAA 59.892 50.000 0.00 0.00 34.23 2.83
98 99 2.020720 ACGAGCACCACAAATTCACAA 58.979 42.857 0.00 0.00 0.00 3.33
104 105 3.742369 GCACCACAAATTCACAATTCTGG 59.258 43.478 4.93 4.93 35.88 3.86
123 124 1.203994 GGCGTCCAGTAGCTCTGTAAA 59.796 52.381 10.86 0.00 42.19 2.01
125 126 3.522553 GCGTCCAGTAGCTCTGTAAATT 58.477 45.455 10.86 0.00 42.19 1.82
126 127 3.552294 GCGTCCAGTAGCTCTGTAAATTC 59.448 47.826 10.86 0.00 42.19 2.17
129 130 5.062308 CGTCCAGTAGCTCTGTAAATTCAAC 59.938 44.000 10.86 0.00 42.19 3.18
135 136 5.695851 AGCTCTGTAAATTCAACCAACTG 57.304 39.130 0.00 0.00 0.00 3.16
145 146 9.313118 GTAAATTCAACCAACTGTTTTCTTGAT 57.687 29.630 0.00 0.00 34.00 2.57
185 190 7.661968 TCTAGAGTTTGATGTAGGCATGTATC 58.338 38.462 0.00 0.00 35.07 2.24
188 193 6.765036 AGAGTTTGATGTAGGCATGTATCAAG 59.235 38.462 10.52 0.00 39.74 3.02
190 195 5.372343 TTGATGTAGGCATGTATCAAGGT 57.628 39.130 7.67 0.00 35.34 3.50
192 197 5.754782 TGATGTAGGCATGTATCAAGGTTT 58.245 37.500 0.00 0.00 35.07 3.27
193 198 6.186957 TGATGTAGGCATGTATCAAGGTTTT 58.813 36.000 0.00 0.00 35.07 2.43
197 768 8.588290 TGTAGGCATGTATCAAGGTTTTAAAT 57.412 30.769 0.00 0.00 0.00 1.40
213 784 5.984233 TTTAAATAGTCTGCTATGGCGTG 57.016 39.130 0.00 0.00 42.25 5.34
229 800 2.354821 GGCGTGGTAATAGCTTTTGGAG 59.645 50.000 0.00 0.00 0.00 3.86
253 824 0.249911 CTCCCGCCAAGCTATGTACC 60.250 60.000 0.00 0.00 0.00 3.34
266 837 8.621286 CCAAGCTATGTACCTTTAATGTTAAGG 58.379 37.037 0.00 0.00 46.17 2.69
291 862 7.241376 GTGAAAATAACTATCACCGACAAAGG 58.759 38.462 0.00 0.00 37.97 3.11
293 864 8.095792 TGAAAATAACTATCACCGACAAAGGTA 58.904 33.333 0.00 0.00 43.89 3.08
294 865 8.851541 AAAATAACTATCACCGACAAAGGTAA 57.148 30.769 0.00 0.00 43.89 2.85
295 866 8.851541 AAATAACTATCACCGACAAAGGTAAA 57.148 30.769 0.00 0.00 43.89 2.01
296 867 8.851541 AATAACTATCACCGACAAAGGTAAAA 57.148 30.769 0.00 0.00 43.89 1.52
297 868 8.851541 ATAACTATCACCGACAAAGGTAAAAA 57.148 30.769 0.00 0.00 43.89 1.94
328 899 9.817809 CTAATAGCCTGATAAATTCCGCTATAA 57.182 33.333 0.00 0.00 39.33 0.98
332 903 6.998673 AGCCTGATAAATTCCGCTATAAAACT 59.001 34.615 0.00 0.00 29.65 2.66
370 989 1.059006 GGAGCCATCCACTCCCTCAT 61.059 60.000 0.00 0.00 46.81 2.90
459 1078 7.391833 GGAATGTTAGATCAGTCCTCAGTTTTT 59.608 37.037 6.02 0.00 45.46 1.94
460 1079 9.436957 GAATGTTAGATCAGTCCTCAGTTTTTA 57.563 33.333 0.00 0.00 0.00 1.52
461 1080 9.793259 AATGTTAGATCAGTCCTCAGTTTTTAA 57.207 29.630 0.00 0.00 0.00 1.52
530 2578 9.698309 TGTTTTCAGTGTTTTCATGTTTTAGAA 57.302 25.926 0.00 0.00 0.00 2.10
575 2623 3.136763 CCTTCGTCGTAGCTCCACTATA 58.863 50.000 0.00 0.00 32.15 1.31
577 2625 4.215827 CCTTCGTCGTAGCTCCACTATAAT 59.784 45.833 0.00 0.00 32.15 1.28
604 2652 2.105128 CTTCTCGCTAGCCACCGG 59.895 66.667 9.66 0.00 0.00 5.28
616 2664 0.375803 GCCACCGGTAAATAAGCACG 59.624 55.000 6.87 0.00 0.00 5.34
650 2698 1.629013 TTAGACTGATTGCGACGCTG 58.371 50.000 22.08 8.38 0.00 5.18
668 2716 1.155016 GAGCGCGCGTTAATCATCG 60.155 57.895 32.35 0.21 0.00 3.84
804 2854 2.125106 CGCTCCTTTCCTTCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
821 2871 2.160022 CCCGGTATTTAAACCACACACG 59.840 50.000 0.00 0.00 39.71 4.49
901 2951 4.514577 CAAGGTCGATCGGGCGCT 62.515 66.667 16.41 5.69 0.00 5.92
944 2995 0.456221 ACACACTGACCGATCGATCC 59.544 55.000 18.66 6.52 0.00 3.36
969 3020 3.713205 CTGCGTGCCTGCTCGATCT 62.713 63.158 16.69 0.00 35.30 2.75
1008 3067 0.322277 CAGAAGCAGGCATGGTCACT 60.322 55.000 2.48 3.92 35.69 3.41
1046 3105 4.833380 AGACCAAGAACAGAGCTACTACAA 59.167 41.667 0.00 0.00 0.00 2.41
1732 3791 1.442526 CTATGCTGGAGGCGGCAAAG 61.443 60.000 13.08 6.47 45.43 2.77
1767 3826 2.281484 TTCTGGAAGGTGGTGCGC 60.281 61.111 0.00 0.00 0.00 6.09
1778 3837 4.803426 GGTGCGCGGAGGAGTCTG 62.803 72.222 8.83 0.00 0.00 3.51
2067 4126 3.402681 CTGGTCGGCAGGATGGGT 61.403 66.667 0.00 0.00 35.86 4.51
2115 4174 3.704231 GATGGCGGTGATGGTGGCT 62.704 63.158 0.00 0.00 0.00 4.75
2190 4249 4.879598 TCGTCTCCAAGAGGTAAAGAAAC 58.120 43.478 0.00 0.00 35.89 2.78
2191 4250 4.342951 TCGTCTCCAAGAGGTAAAGAAACA 59.657 41.667 0.00 0.00 35.89 2.83
2216 4275 8.971321 CATTTCCGCTTAATCCTTAATCAAATG 58.029 33.333 0.00 0.00 0.00 2.32
2217 4276 7.639113 TTCCGCTTAATCCTTAATCAAATGT 57.361 32.000 0.00 0.00 0.00 2.71
2349 4559 8.687301 GTTTGTATAGCACATACACAAAACAAC 58.313 33.333 9.89 7.70 41.25 3.32
2353 4563 5.065704 AGCACATACACAAAACAACAACA 57.934 34.783 0.00 0.00 0.00 3.33
2390 4600 6.430925 AGTTGACGATGGATGAAAAGATGAAA 59.569 34.615 0.00 0.00 0.00 2.69
2449 4659 6.071334 TGTTGAGTACTTGACTAGCTAGCAAT 60.071 38.462 20.91 15.32 39.06 3.56
2472 4682 2.753452 CCTGAACCACGAGTTAGCTAGA 59.247 50.000 0.00 0.00 39.40 2.43
2549 4762 5.995565 TCCTTGTGTAGTAGCATAGTGTT 57.004 39.130 0.00 0.00 0.00 3.32
2561 4774 2.530177 CATAGTGTTGCTGACGTCGAT 58.470 47.619 11.62 0.00 0.00 3.59
2575 4788 1.595609 GTCGATGTTGCTTTCTTGCG 58.404 50.000 0.00 0.00 35.36 4.85
2591 4804 7.218963 GCTTTCTTGCGTTTATTCAAAGATAGG 59.781 37.037 0.00 0.00 0.00 2.57
2594 4807 8.506168 TCTTGCGTTTATTCAAAGATAGGAAT 57.494 30.769 0.00 0.00 37.49 3.01
2613 4826 1.048724 TGGGCGGAGATTCCTGGTAG 61.049 60.000 0.00 0.00 33.30 3.18
2698 4911 5.446875 GCACATATATGATCATGCTTGACCG 60.447 44.000 19.63 7.80 33.85 4.79
2705 4918 3.055458 TGATCATGCTTGACCGGTAAGAA 60.055 43.478 20.96 14.41 33.85 2.52
2750 4963 0.179111 CGGCAATCAAGGAGTCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
2763 4976 7.442969 TCAAGGAGTCGCTATTTTGTTTTAGAA 59.557 33.333 0.00 0.00 0.00 2.10
2818 5438 9.840427 TCTCCTTTTCTCGCAAAAATAAATAAG 57.160 29.630 0.00 0.00 0.00 1.73
2827 5447 9.834628 CTCGCAAAAATAAATAAGTAAGGTCAA 57.165 29.630 0.00 0.00 0.00 3.18
2838 5458 7.891498 ATAAGTAAGGTCAAAACAACCAAGT 57.109 32.000 0.00 0.00 39.39 3.16
2839 5459 6.599356 AAGTAAGGTCAAAACAACCAAGTT 57.401 33.333 0.00 0.00 39.39 2.66
2840 5460 7.706100 AAGTAAGGTCAAAACAACCAAGTTA 57.294 32.000 0.00 0.00 39.39 2.24
2841 5461 7.706100 AGTAAGGTCAAAACAACCAAGTTAA 57.294 32.000 0.00 0.00 39.39 2.01
2842 5462 7.768240 AGTAAGGTCAAAACAACCAAGTTAAG 58.232 34.615 0.00 0.00 39.39 1.85
2843 5463 6.844097 AAGGTCAAAACAACCAAGTTAAGA 57.156 33.333 0.00 0.00 39.39 2.10
2844 5464 6.844097 AGGTCAAAACAACCAAGTTAAGAA 57.156 33.333 0.00 0.00 39.39 2.52
2845 5465 7.234661 AGGTCAAAACAACCAAGTTAAGAAA 57.765 32.000 0.00 0.00 39.39 2.52
2846 5466 7.094631 AGGTCAAAACAACCAAGTTAAGAAAC 58.905 34.615 0.00 0.00 39.39 2.78
2847 5467 6.869388 GGTCAAAACAACCAAGTTAAGAAACA 59.131 34.615 0.00 0.00 36.08 2.83
2848 5468 7.385478 GGTCAAAACAACCAAGTTAAGAAACAA 59.615 33.333 0.00 0.00 36.08 2.83
2947 5964 4.439057 TCATACAACAAGCGGGTAATCTC 58.561 43.478 0.00 0.00 0.00 2.75
2956 5973 6.456501 ACAAGCGGGTAATCTCATATAACTC 58.543 40.000 0.00 0.00 0.00 3.01
3034 6051 4.718961 ACTATGCAAGTGAAAGTTCCACT 58.281 39.130 0.00 0.00 45.88 4.00
3051 6072 2.121786 CACTCAACAATGTTGCACAGC 58.878 47.619 20.34 0.00 0.00 4.40
3088 6109 9.109393 GTCATTTCCACTAGATTATGCAACTTA 57.891 33.333 0.00 0.00 0.00 2.24
3089 6110 9.851686 TCATTTCCACTAGATTATGCAACTTAT 57.148 29.630 0.00 0.00 0.00 1.73
3172 6195 9.640963 GTATGTACAGTTTCTGTTCTCATACTT 57.359 33.333 23.76 12.95 42.59 2.24
3228 6258 8.570068 AAATTTCATTTAATGCAGCCAATTCT 57.430 26.923 0.00 0.00 0.00 2.40
3237 6267 3.976169 TGCAGCCAATTCTTACAACAAC 58.024 40.909 0.00 0.00 0.00 3.32
3238 6268 3.382865 TGCAGCCAATTCTTACAACAACA 59.617 39.130 0.00 0.00 0.00 3.33
3240 6270 3.974401 CAGCCAATTCTTACAACAACACG 59.026 43.478 0.00 0.00 0.00 4.49
3241 6271 2.724174 GCCAATTCTTACAACAACACGC 59.276 45.455 0.00 0.00 0.00 5.34
3244 6274 3.955771 ATTCTTACAACAACACGCGTT 57.044 38.095 10.22 0.00 35.01 4.84
3257 6287 6.094719 ACAACACGCGTTTTATCATCTAGTA 58.905 36.000 10.22 0.00 31.13 1.82
3258 6288 6.252869 ACAACACGCGTTTTATCATCTAGTAG 59.747 38.462 10.22 0.00 31.13 2.57
3259 6289 5.888105 ACACGCGTTTTATCATCTAGTAGT 58.112 37.500 10.22 0.00 0.00 2.73
3260 6290 7.019774 ACACGCGTTTTATCATCTAGTAGTA 57.980 36.000 10.22 0.00 0.00 1.82
3293 6324 7.473735 TTTGGTAATTAATCAATGCAGGTCA 57.526 32.000 0.00 0.00 0.00 4.02
3324 6355 2.655364 CTGGTATGACGGCGAGCG 60.655 66.667 16.62 0.00 0.00 5.03
3325 6356 4.201679 TGGTATGACGGCGAGCGG 62.202 66.667 16.62 1.00 0.00 5.52
3405 6436 1.690633 GGTGGAGGAGGCCATCTCA 60.691 63.158 21.71 9.41 44.19 3.27
3411 6442 1.767681 GAGGAGGCCATCTCATTCACT 59.232 52.381 17.25 0.00 44.19 3.41
3435 6466 2.281761 ACCAGCCTCCTTTGCACG 60.282 61.111 0.00 0.00 0.00 5.34
3446 6477 3.414136 TTTGCACGCTCCCTGTGGT 62.414 57.895 0.00 0.00 37.80 4.16
3467 6498 2.139118 GCTCATCTATTTCCCACGCTC 58.861 52.381 0.00 0.00 0.00 5.03
3496 6527 4.272511 TTTGCGGCCCCTCGGAAA 62.273 61.111 0.00 0.00 45.37 3.13
3517 6548 2.522060 GACATCGTCGGCCATGATC 58.478 57.895 0.37 0.00 0.00 2.92
3524 6555 2.961721 CGGCCATGATCGTCACGG 60.962 66.667 2.24 0.00 31.89 4.94
3577 6611 6.594788 ACATGCTTCTAAAAATGATGTGGT 57.405 33.333 0.00 0.00 0.00 4.16
3584 6618 3.874392 AAAAATGATGTGGTAGCTGGC 57.126 42.857 0.00 0.00 0.00 4.85
3587 6621 3.931907 AATGATGTGGTAGCTGGCTAA 57.068 42.857 3.73 0.00 0.00 3.09
3614 6656 7.907389 TCAGCCTGTAAATATAAGGATAGGTG 58.093 38.462 0.00 0.00 32.43 4.00
3622 6664 9.014297 GTAAATATAAGGATAGGTGCATGCTTT 57.986 33.333 20.33 8.01 37.67 3.51
3630 6672 5.394443 GGATAGGTGCATGCTTTTGAAATGA 60.394 40.000 20.33 0.00 0.00 2.57
3636 6678 6.293516 GGTGCATGCTTTTGAAATGAAAATGA 60.294 34.615 20.33 0.00 0.00 2.57
3643 6685 8.136165 TGCTTTTGAAATGAAAATGAAAATGGG 58.864 29.630 0.00 0.00 0.00 4.00
3648 6690 9.570468 TTGAAATGAAAATGAAAATGGGAATGA 57.430 25.926 0.00 0.00 0.00 2.57
3649 6691 9.221933 TGAAATGAAAATGAAAATGGGAATGAG 57.778 29.630 0.00 0.00 0.00 2.90
3650 6692 9.439500 GAAATGAAAATGAAAATGGGAATGAGA 57.561 29.630 0.00 0.00 0.00 3.27
3651 6693 9.796180 AAATGAAAATGAAAATGGGAATGAGAA 57.204 25.926 0.00 0.00 0.00 2.87
3652 6694 9.444600 AATGAAAATGAAAATGGGAATGAGAAG 57.555 29.630 0.00 0.00 0.00 2.85
3653 6695 8.192743 TGAAAATGAAAATGGGAATGAGAAGA 57.807 30.769 0.00 0.00 0.00 2.87
3686 6728 5.069648 ACACAATCTCTCAAGACTCTGAACA 59.930 40.000 0.00 0.00 33.32 3.18
3706 6748 2.975410 ACATGTGATGACTTGTTGCG 57.025 45.000 0.00 0.00 37.20 4.85
3737 6779 1.378646 GGCTAAGGGCAAGGGTGAC 60.379 63.158 0.00 0.00 44.01 3.67
3751 6794 1.682849 GTGACCCCCATGTGTGCTA 59.317 57.895 0.00 0.00 0.00 3.49
3762 6805 1.904287 TGTGTGCTACCCATTTGTCC 58.096 50.000 0.00 0.00 0.00 4.02
3770 6813 3.119137 GCTACCCATTTGTCCATTTGGTC 60.119 47.826 0.00 0.00 36.34 4.02
3778 6822 6.870965 CCATTTGTCCATTTGGTCGAAAAATA 59.129 34.615 6.94 0.00 31.97 1.40
3782 6826 4.461431 GTCCATTTGGTCGAAAAATAGGGT 59.539 41.667 6.94 0.00 36.34 4.34
3789 6833 6.262193 TGGTCGAAAAATAGGGTGATTTTC 57.738 37.500 0.00 0.00 37.91 2.29
3802 6846 3.763897 GGTGATTTTCTTACCATGGCACT 59.236 43.478 13.04 0.00 34.61 4.40
3803 6847 4.220602 GGTGATTTTCTTACCATGGCACTT 59.779 41.667 13.04 0.00 34.61 3.16
3832 6886 9.912634 TTCATTTGTCTGTTAGGATTGAATTTC 57.087 29.630 0.00 0.00 0.00 2.17
3833 6887 9.300681 TCATTTGTCTGTTAGGATTGAATTTCT 57.699 29.630 0.00 0.00 0.00 2.52
3867 6921 3.645687 GGAGAGGGAGCTTGAATAGTCAT 59.354 47.826 0.00 0.00 32.48 3.06
3871 6925 5.483583 AGAGGGAGCTTGAATAGTCATATCC 59.516 44.000 9.24 9.24 32.48 2.59
3872 6926 5.158141 AGGGAGCTTGAATAGTCATATCCA 58.842 41.667 16.09 0.00 34.18 3.41
3911 6965 4.565022 ACCGATTTTAGTGGGCAATTTTG 58.435 39.130 0.00 0.00 0.00 2.44
3918 6972 2.837498 AGTGGGCAATTTTGAAGCAAC 58.163 42.857 0.00 0.00 0.00 4.17
3932 6986 3.321111 TGAAGCAACGACTTTCTAGGAGT 59.679 43.478 0.00 0.09 0.00 3.85
3939 6993 5.786264 ACGACTTTCTAGGAGTTTCTTCA 57.214 39.130 0.00 0.00 0.00 3.02
3940 6994 6.158023 ACGACTTTCTAGGAGTTTCTTCAA 57.842 37.500 0.00 0.00 0.00 2.69
3957 7011 9.620660 GTTTCTTCAAAGAACTTGACAAGTAAA 57.379 29.630 20.85 11.24 43.90 2.01
3958 7012 9.840427 TTTCTTCAAAGAACTTGACAAGTAAAG 57.160 29.630 20.85 15.56 43.90 1.85
3959 7013 7.985476 TCTTCAAAGAACTTGACAAGTAAAGG 58.015 34.615 20.85 10.15 43.90 3.11
3972 7026 1.003118 AGTAAAGGCATCTCCAACGCA 59.997 47.619 0.00 0.00 37.29 5.24
3975 7029 0.254178 AAGGCATCTCCAACGCAGAT 59.746 50.000 0.00 0.00 37.29 2.90
3979 7033 0.467384 CATCTCCAACGCAGATCCCT 59.533 55.000 0.00 0.00 0.00 4.20
3985 7039 1.867233 CCAACGCAGATCCCTAAATCG 59.133 52.381 0.00 0.00 0.00 3.34
4005 7059 1.135527 GGACACCGTATCCATTCACGA 59.864 52.381 0.00 0.00 40.56 4.35
4009 7063 1.551430 ACCGTATCCATTCACGAACCA 59.449 47.619 0.00 0.00 40.56 3.67
4010 7064 2.027929 ACCGTATCCATTCACGAACCAA 60.028 45.455 0.00 0.00 40.56 3.67
4021 7075 1.739466 CACGAACCAATCTGGACATGG 59.261 52.381 0.00 0.00 40.96 3.66
4067 7129 2.742053 GTCATCCAAAGCTAGTCGCAAA 59.258 45.455 0.00 0.00 42.61 3.68
4069 7131 1.144969 TCCAAAGCTAGTCGCAAACG 58.855 50.000 0.00 0.00 42.61 3.60
4072 7134 1.136336 CAAAGCTAGTCGCAAACGTCC 60.136 52.381 0.00 0.00 42.61 4.79
4084 7146 1.600013 CAAACGTCCGGTCACATTTGA 59.400 47.619 8.66 0.00 30.35 2.69
4093 7155 4.460731 TCCGGTCACATTTGATGCAAATTA 59.539 37.500 0.00 0.00 40.60 1.40
4100 7162 9.881529 GTCACATTTGATGCAAATTAAACAAAT 57.118 25.926 2.84 0.00 40.60 2.32
4104 7166 9.894783 CATTTGATGCAAATTAAACAAATTGGA 57.105 25.926 2.84 0.00 40.60 3.53
4149 7211 9.685276 AGATAATGTTTACATGAAACCTGATGA 57.315 29.630 0.00 0.00 45.94 2.92
4179 7241 8.015658 GCATCTAAACCGGATAACATTCATTAC 58.984 37.037 9.46 0.00 0.00 1.89
4180 7242 9.051679 CATCTAAACCGGATAACATTCATTACA 57.948 33.333 9.46 0.00 0.00 2.41
4182 7244 9.621629 TCTAAACCGGATAACATTCATTACATT 57.378 29.630 9.46 0.00 0.00 2.71
4186 7248 7.414436 ACCGGATAACATTCATTACATTTTCG 58.586 34.615 9.46 0.00 0.00 3.46
4187 7249 7.281324 ACCGGATAACATTCATTACATTTTCGA 59.719 33.333 9.46 0.00 0.00 3.71
4188 7250 7.586300 CCGGATAACATTCATTACATTTTCGAC 59.414 37.037 0.00 0.00 0.00 4.20
4189 7251 8.119845 CGGATAACATTCATTACATTTTCGACA 58.880 33.333 0.00 0.00 0.00 4.35
4190 7252 9.950680 GGATAACATTCATTACATTTTCGACAT 57.049 29.630 0.00 0.00 0.00 3.06
4236 7298 5.353394 AACCTAGTCTAAATGATTGCCGA 57.647 39.130 0.00 0.00 0.00 5.54
4238 7300 3.736252 CCTAGTCTAAATGATTGCCGACG 59.264 47.826 0.00 0.00 0.00 5.12
4240 7302 1.003866 GTCTAAATGATTGCCGACGCC 60.004 52.381 0.00 0.00 0.00 5.68
4245 7307 1.037030 ATGATTGCCGACGCCCATTT 61.037 50.000 0.00 0.00 0.00 2.32
4247 7309 1.653094 GATTGCCGACGCCCATTTCA 61.653 55.000 0.00 0.00 0.00 2.69
4250 7312 2.406616 GCCGACGCCCATTTCACAT 61.407 57.895 0.00 0.00 0.00 3.21
4263 7325 4.142315 CCATTTCACATGACATGTCTTCCC 60.142 45.833 25.55 0.71 42.70 3.97
4274 7336 3.781307 TCTTCCCCATGTCCGGCG 61.781 66.667 0.00 0.00 0.00 6.46
4304 7366 3.432051 GACCGGCCGTGATCCTCTG 62.432 68.421 26.12 7.62 0.00 3.35
4305 7367 4.227134 CCGGCCGTGATCCTCTGG 62.227 72.222 26.12 0.00 0.00 3.86
4306 7368 3.147595 CGGCCGTGATCCTCTGGA 61.148 66.667 19.50 0.00 35.55 3.86
4307 7369 2.721167 CGGCCGTGATCCTCTGGAA 61.721 63.158 19.50 0.00 34.34 3.53
4308 7370 1.144936 GGCCGTGATCCTCTGGAAG 59.855 63.158 0.00 0.00 34.34 3.46
4309 7371 1.617947 GGCCGTGATCCTCTGGAAGT 61.618 60.000 0.00 0.00 34.34 3.01
4310 7372 0.460987 GCCGTGATCCTCTGGAAGTG 60.461 60.000 0.00 0.00 34.34 3.16
4311 7373 1.186200 CCGTGATCCTCTGGAAGTGA 58.814 55.000 0.00 0.00 34.34 3.41
4312 7374 1.550524 CCGTGATCCTCTGGAAGTGAA 59.449 52.381 0.00 0.00 34.34 3.18
4313 7375 2.417924 CCGTGATCCTCTGGAAGTGAAG 60.418 54.545 0.00 0.00 34.34 3.02
4314 7376 2.626840 GTGATCCTCTGGAAGTGAAGC 58.373 52.381 0.00 0.00 34.34 3.86
4315 7377 2.235898 GTGATCCTCTGGAAGTGAAGCT 59.764 50.000 0.00 0.00 34.34 3.74
4316 7378 2.909006 TGATCCTCTGGAAGTGAAGCTT 59.091 45.455 0.00 0.00 40.76 3.74
4317 7379 4.081420 GTGATCCTCTGGAAGTGAAGCTTA 60.081 45.833 0.00 0.00 37.59 3.09
4318 7380 4.532126 TGATCCTCTGGAAGTGAAGCTTAA 59.468 41.667 0.00 0.00 37.59 1.85
4319 7381 4.543590 TCCTCTGGAAGTGAAGCTTAAG 57.456 45.455 0.00 0.00 37.59 1.85
4320 7382 3.006247 CCTCTGGAAGTGAAGCTTAAGC 58.994 50.000 20.09 20.09 37.59 3.09
4321 7383 3.557898 CCTCTGGAAGTGAAGCTTAAGCA 60.558 47.826 28.39 6.03 38.40 3.91
4322 7384 3.668447 TCTGGAAGTGAAGCTTAAGCAG 58.332 45.455 28.39 13.77 38.40 4.24
4323 7385 2.746362 CTGGAAGTGAAGCTTAAGCAGG 59.254 50.000 28.39 3.18 45.16 4.85
4324 7386 2.371841 TGGAAGTGAAGCTTAAGCAGGA 59.628 45.455 28.39 9.07 45.16 3.86
4325 7387 3.181445 TGGAAGTGAAGCTTAAGCAGGAA 60.181 43.478 28.39 8.95 45.16 3.36
4326 7388 3.438434 GGAAGTGAAGCTTAAGCAGGAAG 59.562 47.826 28.39 0.00 45.16 3.46
4327 7389 3.064900 AGTGAAGCTTAAGCAGGAAGG 57.935 47.619 28.39 0.00 45.16 3.46
4331 7393 3.010584 TGAAGCTTAAGCAGGAAGGGAAT 59.989 43.478 28.39 1.34 45.16 3.01
4349 7411 0.542232 ATAATAGCCTCCGCCTCCGT 60.542 55.000 0.00 0.00 34.57 4.69
4388 7450 0.106918 GCCGGTTATGATCCCACCAA 60.107 55.000 1.90 0.00 0.00 3.67
4425 7487 2.838813 GAGGGTAAGAGTAGTGGCCTTT 59.161 50.000 3.32 0.00 0.00 3.11
4426 7488 2.572104 AGGGTAAGAGTAGTGGCCTTTG 59.428 50.000 3.32 0.00 0.00 2.77
4427 7489 2.305052 GGGTAAGAGTAGTGGCCTTTGT 59.695 50.000 3.32 0.00 0.00 2.83
4428 7490 3.244805 GGGTAAGAGTAGTGGCCTTTGTT 60.245 47.826 3.32 0.00 0.00 2.83
4429 7491 3.751698 GGTAAGAGTAGTGGCCTTTGTTG 59.248 47.826 3.32 0.00 0.00 3.33
4430 7492 2.568623 AGAGTAGTGGCCTTTGTTGG 57.431 50.000 3.32 0.00 0.00 3.77
4431 7493 1.073923 AGAGTAGTGGCCTTTGTTGGG 59.926 52.381 3.32 0.00 0.00 4.12
4432 7494 0.112412 AGTAGTGGCCTTTGTTGGGG 59.888 55.000 3.32 0.00 0.00 4.96
4433 7495 0.111639 GTAGTGGCCTTTGTTGGGGA 59.888 55.000 3.32 0.00 0.00 4.81
4434 7496 0.854218 TAGTGGCCTTTGTTGGGGAA 59.146 50.000 3.32 0.00 0.00 3.97
4435 7497 0.759060 AGTGGCCTTTGTTGGGGAAC 60.759 55.000 3.32 0.00 0.00 3.62
4436 7498 1.830408 TGGCCTTTGTTGGGGAACG 60.830 57.895 3.32 0.00 0.00 3.95
4437 7499 2.338620 GCCTTTGTTGGGGAACGC 59.661 61.111 0.00 0.00 43.69 4.84
4449 7511 3.926821 GGGGAACGCAGTAATTTCAAA 57.073 42.857 0.00 0.00 45.00 2.69
4450 7512 4.245845 GGGGAACGCAGTAATTTCAAAA 57.754 40.909 0.00 0.00 45.00 2.44
4451 7513 4.623002 GGGGAACGCAGTAATTTCAAAAA 58.377 39.130 0.00 0.00 45.00 1.94
4468 7530 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
4469 7531 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
4470 7532 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
4471 7533 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
4472 7534 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
4473 7535 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
4474 7536 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
4475 7537 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
4476 7538 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
4477 7539 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
4478 7540 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
4479 7541 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
4480 7542 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
4481 7543 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
4482 7544 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
4483 7545 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
4484 7546 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
4485 7547 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
4486 7548 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
4487 7549 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
4488 7550 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
4489 7551 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
4490 7552 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
4491 7553 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
4492 7554 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
4493 7555 3.002038 TCATGGTGATGCATAGCAACA 57.998 42.857 8.42 8.42 45.07 3.33
4494 7556 3.354467 TCATGGTGATGCATAGCAACAA 58.646 40.909 9.90 0.00 44.04 2.83
4495 7557 3.379057 TCATGGTGATGCATAGCAACAAG 59.621 43.478 9.90 6.31 44.04 3.16
4496 7558 3.070476 TGGTGATGCATAGCAACAAGA 57.930 42.857 0.00 0.00 42.49 3.02
4497 7559 3.623703 TGGTGATGCATAGCAACAAGAT 58.376 40.909 0.00 0.00 42.49 2.40
4498 7560 3.379057 TGGTGATGCATAGCAACAAGATG 59.621 43.478 0.00 0.00 42.49 2.90
4499 7561 3.243301 GGTGATGCATAGCAACAAGATGG 60.243 47.826 0.00 0.00 42.49 3.51
4500 7562 2.953648 TGATGCATAGCAACAAGATGGG 59.046 45.455 0.00 0.00 43.62 4.00
4501 7563 2.804986 TGCATAGCAACAAGATGGGA 57.195 45.000 0.00 0.00 34.76 4.37
4502 7564 2.646930 TGCATAGCAACAAGATGGGAG 58.353 47.619 0.00 0.00 34.76 4.30
4503 7565 2.239402 TGCATAGCAACAAGATGGGAGA 59.761 45.455 0.00 0.00 34.76 3.71
4504 7566 2.877168 GCATAGCAACAAGATGGGAGAG 59.123 50.000 0.00 0.00 0.00 3.20
4505 7567 3.683847 GCATAGCAACAAGATGGGAGAGT 60.684 47.826 0.00 0.00 0.00 3.24
4506 7568 4.443457 GCATAGCAACAAGATGGGAGAGTA 60.443 45.833 0.00 0.00 0.00 2.59
4507 7569 5.744300 GCATAGCAACAAGATGGGAGAGTAT 60.744 44.000 0.00 0.00 0.00 2.12
4508 7570 4.851639 AGCAACAAGATGGGAGAGTATT 57.148 40.909 0.00 0.00 0.00 1.89
4509 7571 4.521146 AGCAACAAGATGGGAGAGTATTG 58.479 43.478 0.00 0.00 0.00 1.90
4510 7572 4.018960 AGCAACAAGATGGGAGAGTATTGT 60.019 41.667 0.00 0.00 32.55 2.71
4511 7573 4.333926 GCAACAAGATGGGAGAGTATTGTC 59.666 45.833 0.00 0.00 30.95 3.18
4512 7574 5.738909 CAACAAGATGGGAGAGTATTGTCT 58.261 41.667 0.00 0.00 30.95 3.41
4513 7575 6.630413 GCAACAAGATGGGAGAGTATTGTCTA 60.630 42.308 0.00 0.00 30.95 2.59
4514 7576 6.472686 ACAAGATGGGAGAGTATTGTCTAC 57.527 41.667 0.00 0.00 0.00 2.59
4515 7577 6.198639 ACAAGATGGGAGAGTATTGTCTACT 58.801 40.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.775854 ATCATACAAAAACCAATGTTCAATGAA 57.224 25.926 0.00 0.00 32.15 2.57
8 9 8.695456 GGGAGAATATCATACAAAAACCAATGT 58.305 33.333 0.00 0.00 0.00 2.71
9 10 8.917088 AGGGAGAATATCATACAAAAACCAATG 58.083 33.333 0.00 0.00 0.00 2.82
10 11 9.492730 AAGGGAGAATATCATACAAAAACCAAT 57.507 29.630 0.00 0.00 0.00 3.16
11 12 8.748412 CAAGGGAGAATATCATACAAAAACCAA 58.252 33.333 0.00 0.00 0.00 3.67
12 13 7.893302 ACAAGGGAGAATATCATACAAAAACCA 59.107 33.333 0.00 0.00 0.00 3.67
13 14 8.190784 CACAAGGGAGAATATCATACAAAAACC 58.809 37.037 0.00 0.00 0.00 3.27
14 15 8.956426 TCACAAGGGAGAATATCATACAAAAAC 58.044 33.333 0.00 0.00 0.00 2.43
15 16 9.699410 ATCACAAGGGAGAATATCATACAAAAA 57.301 29.630 0.00 0.00 0.00 1.94
22 23 9.950496 GTGTATTATCACAAGGGAGAATATCAT 57.050 33.333 3.06 0.00 34.56 2.45
23 24 8.088365 CGTGTATTATCACAAGGGAGAATATCA 58.912 37.037 3.06 1.82 34.56 2.15
24 25 7.063544 GCGTGTATTATCACAAGGGAGAATATC 59.936 40.741 3.06 0.68 34.56 1.63
25 26 6.874134 GCGTGTATTATCACAAGGGAGAATAT 59.126 38.462 3.06 0.00 34.56 1.28
26 27 6.183360 TGCGTGTATTATCACAAGGGAGAATA 60.183 38.462 0.00 0.00 38.12 1.75
27 28 5.057149 GCGTGTATTATCACAAGGGAGAAT 58.943 41.667 0.00 0.00 38.12 2.40
28 29 4.081365 TGCGTGTATTATCACAAGGGAGAA 60.081 41.667 0.00 0.00 38.12 2.87
29 30 3.449377 TGCGTGTATTATCACAAGGGAGA 59.551 43.478 0.00 0.00 38.12 3.71
30 31 3.555956 GTGCGTGTATTATCACAAGGGAG 59.444 47.826 0.00 0.00 38.12 4.30
31 32 3.055747 TGTGCGTGTATTATCACAAGGGA 60.056 43.478 0.00 0.00 36.62 4.20
32 33 3.266636 TGTGCGTGTATTATCACAAGGG 58.733 45.455 0.00 0.00 36.62 3.95
33 34 6.347644 CCATATGTGCGTGTATTATCACAAGG 60.348 42.308 1.24 0.00 41.92 3.61
34 35 6.423604 TCCATATGTGCGTGTATTATCACAAG 59.576 38.462 1.24 0.00 41.92 3.16
35 36 6.284459 TCCATATGTGCGTGTATTATCACAA 58.716 36.000 1.24 0.00 41.92 3.33
36 37 5.848406 TCCATATGTGCGTGTATTATCACA 58.152 37.500 1.24 0.00 42.66 3.58
48 49 2.745821 AGCTGCAATATCCATATGTGCG 59.254 45.455 1.02 6.70 0.00 5.34
50 51 6.622245 GCTTGTAGCTGCAATATCCATATGTG 60.622 42.308 17.94 2.94 38.45 3.21
51 52 5.413833 GCTTGTAGCTGCAATATCCATATGT 59.586 40.000 17.94 0.00 38.45 2.29
58 59 3.430218 CGTAGGCTTGTAGCTGCAATATC 59.570 47.826 17.94 10.12 41.99 1.63
71 72 0.602638 TTGTGGTGCTCGTAGGCTTG 60.603 55.000 0.00 0.00 0.00 4.01
72 73 0.107831 TTTGTGGTGCTCGTAGGCTT 59.892 50.000 0.00 0.00 0.00 4.35
75 76 2.159627 GTGAATTTGTGGTGCTCGTAGG 59.840 50.000 0.00 0.00 0.00 3.18
87 88 3.305335 GGACGCCAGAATTGTGAATTTGT 60.305 43.478 3.74 0.00 0.00 2.83
89 90 2.890311 TGGACGCCAGAATTGTGAATTT 59.110 40.909 3.74 0.00 0.00 1.82
91 92 2.198827 TGGACGCCAGAATTGTGAAT 57.801 45.000 3.74 0.00 0.00 2.57
117 118 8.594687 CAAGAAAACAGTTGGTTGAATTTACAG 58.405 33.333 0.00 0.00 40.35 2.74
185 190 7.196331 GCCATAGCAGACTATTTAAAACCTTG 58.804 38.462 0.00 0.00 36.96 3.61
188 193 5.296035 ACGCCATAGCAGACTATTTAAAACC 59.704 40.000 0.00 0.00 36.96 3.27
190 195 5.295787 CCACGCCATAGCAGACTATTTAAAA 59.704 40.000 0.00 0.00 36.96 1.52
192 197 4.141801 ACCACGCCATAGCAGACTATTTAA 60.142 41.667 0.00 0.00 36.96 1.52
193 198 3.386726 ACCACGCCATAGCAGACTATTTA 59.613 43.478 0.00 0.00 36.96 1.40
197 768 2.061509 TACCACGCCATAGCAGACTA 57.938 50.000 0.00 0.00 39.83 2.59
213 784 4.518249 AGCACTCTCCAAAAGCTATTACC 58.482 43.478 0.00 0.00 33.06 2.85
241 812 9.174166 ACCTTAACATTAAAGGTACATAGCTTG 57.826 33.333 5.73 0.00 42.60 4.01
266 837 7.094933 ACCTTTGTCGGTGATAGTTATTTTCAC 60.095 37.037 0.00 0.00 39.19 3.18
297 868 8.135529 GCGGAATTTATCAGGCTATTAGTTTTT 58.864 33.333 0.00 0.00 0.00 1.94
298 869 7.502561 AGCGGAATTTATCAGGCTATTAGTTTT 59.497 33.333 0.00 0.00 37.52 2.43
299 870 6.998673 AGCGGAATTTATCAGGCTATTAGTTT 59.001 34.615 0.00 0.00 37.52 2.66
308 879 7.203255 AGTTTTATAGCGGAATTTATCAGGC 57.797 36.000 0.00 0.00 0.00 4.85
328 899 8.907222 TCCGTGGAACTTACTAAATTTAGTTT 57.093 30.769 30.41 20.71 38.81 2.66
332 903 5.876460 GGCTCCGTGGAACTTACTAAATTTA 59.124 40.000 0.00 0.00 31.75 1.40
364 983 5.302823 ACAAAACAAGAAGGAAGAATGAGGG 59.697 40.000 0.00 0.00 0.00 4.30
393 1012 9.182214 AGTTTCAAAATCAGTATAGTGCATCAT 57.818 29.630 2.40 0.00 0.00 2.45
433 1052 5.606348 ACTGAGGACTGATCTAACATTCC 57.394 43.478 0.00 0.00 39.07 3.01
435 1054 9.793259 TTAAAAACTGAGGACTGATCTAACATT 57.207 29.630 0.00 0.00 0.00 2.71
503 2549 9.868277 TCTAAAACATGAAAACACTGAAAACAT 57.132 25.926 0.00 0.00 0.00 2.71
536 2584 4.521639 CGAAGGTAAAGCCCCTTTTAAGTT 59.478 41.667 0.00 0.00 42.37 2.66
544 2592 1.190178 ACGACGAAGGTAAAGCCCCT 61.190 55.000 0.00 0.00 38.26 4.79
545 2593 0.532115 TACGACGAAGGTAAAGCCCC 59.468 55.000 0.00 0.00 38.26 5.80
546 2594 1.918595 CTACGACGAAGGTAAAGCCC 58.081 55.000 0.00 0.00 38.26 5.19
550 2598 2.095059 GTGGAGCTACGACGAAGGTAAA 60.095 50.000 0.00 0.00 0.00 2.01
575 2623 6.374333 TGGCTAGCGAGAAGTTATGAAAAATT 59.626 34.615 9.00 0.00 0.00 1.82
577 2625 5.121768 GTGGCTAGCGAGAAGTTATGAAAAA 59.878 40.000 9.00 0.00 0.00 1.94
595 2643 2.739287 CGTGCTTATTTACCGGTGGCTA 60.739 50.000 19.93 2.26 0.00 3.93
616 2664 1.194772 GTCTAAAGCTTGCACGACACC 59.805 52.381 0.00 0.00 0.00 4.16
650 2698 1.155016 CGATGATTAACGCGCGCTC 60.155 57.895 32.58 21.09 0.00 5.03
804 2854 4.460505 GTGAGCGTGTGTGGTTTAAATAC 58.539 43.478 0.00 0.00 0.00 1.89
821 2871 2.100197 GGGGTTTAGATTTGGGTGAGC 58.900 52.381 0.00 0.00 0.00 4.26
857 2907 2.074729 AGTACTAGGCTGCTACTGGG 57.925 55.000 0.00 0.00 0.00 4.45
901 2951 3.870274 TCGAACGATCTCTTGACCTCTA 58.130 45.455 0.00 0.00 0.00 2.43
969 3020 1.103803 CTTAGACCGAGCTAGGCACA 58.896 55.000 13.48 0.00 33.69 4.57
1008 3067 2.840511 TGGTCTACCTTCTTGCCCATA 58.159 47.619 0.02 0.00 36.82 2.74
1046 3105 4.082523 CGATGTGGGCCCAGTCGT 62.083 66.667 35.11 24.19 33.46 4.34
1629 3688 1.070957 GCACGGGATAAGGTAGGCC 59.929 63.158 0.00 0.00 0.00 5.19
1727 3786 4.377708 CCCCTTTGGCGCCTTTGC 62.378 66.667 29.70 0.00 0.00 3.68
1778 3837 4.944372 CCCACGCCCGATAGTCGC 62.944 72.222 0.00 0.00 38.82 5.19
2040 4099 3.414700 CCGACCAGAACGCACAGC 61.415 66.667 0.00 0.00 0.00 4.40
2043 4102 3.414700 CTGCCGACCAGAACGCAC 61.415 66.667 0.00 0.00 44.64 5.34
2332 4403 5.769967 TTGTTGTTGTTTTGTGTATGTGC 57.230 34.783 0.00 0.00 0.00 4.57
2359 4569 7.390440 TCTTTTCATCCATCGTCAACTTGTATT 59.610 33.333 0.00 0.00 0.00 1.89
2370 4580 5.124457 CCAGTTTCATCTTTTCATCCATCGT 59.876 40.000 0.00 0.00 0.00 3.73
2449 4659 0.320421 GCTAACTCGTGGTTCAGGCA 60.320 55.000 0.47 0.00 39.17 4.75
2481 4691 2.357034 GGAAGCTTGTCGTCGGCA 60.357 61.111 2.10 0.00 0.00 5.69
2549 4762 0.599991 AAGCAACATCGACGTCAGCA 60.600 50.000 17.16 0.00 0.00 4.41
2561 4774 4.926244 TGAATAAACGCAAGAAAGCAACA 58.074 34.783 0.00 0.00 43.62 3.33
2575 4788 6.438763 CGCCCATTCCTATCTTTGAATAAAC 58.561 40.000 0.00 0.00 30.31 2.01
2591 4804 0.536006 CCAGGAATCTCCGCCCATTC 60.536 60.000 0.00 0.00 42.75 2.67
2594 4807 1.002403 TACCAGGAATCTCCGCCCA 59.998 57.895 0.00 0.00 42.75 5.36
2640 4853 0.531974 AACAAGGCGCGTCTCTTTCA 60.532 50.000 16.36 0.00 0.00 2.69
2698 4911 7.445402 ACATACATGCATGGTAGATTTCTTACC 59.555 37.037 29.41 0.00 0.00 2.85
2705 4918 5.308976 TCCACATACATGCATGGTAGATT 57.691 39.130 29.41 10.82 33.67 2.40
2763 4976 1.448540 GCTCTGTAGGCGCACATGT 60.449 57.895 10.83 0.00 0.00 3.21
2818 5438 7.764331 TCTTAACTTGGTTGTTTTGACCTTAC 58.236 34.615 0.00 0.00 38.04 2.34
2827 5447 8.664211 TGTTTTGTTTCTTAACTTGGTTGTTT 57.336 26.923 0.00 0.00 35.24 2.83
2828 5448 8.552865 GTTGTTTTGTTTCTTAACTTGGTTGTT 58.447 29.630 0.00 0.00 35.24 2.83
2829 5449 7.171848 GGTTGTTTTGTTTCTTAACTTGGTTGT 59.828 33.333 0.00 0.00 35.24 3.32
2830 5450 7.171678 TGGTTGTTTTGTTTCTTAACTTGGTTG 59.828 33.333 0.00 0.00 35.24 3.77
2831 5451 7.217906 TGGTTGTTTTGTTTCTTAACTTGGTT 58.782 30.769 0.00 0.00 35.24 3.67
2832 5452 6.760291 TGGTTGTTTTGTTTCTTAACTTGGT 58.240 32.000 0.00 0.00 35.24 3.67
2833 5453 7.386573 ACTTGGTTGTTTTGTTTCTTAACTTGG 59.613 33.333 0.00 0.00 35.24 3.61
2834 5454 8.305441 ACTTGGTTGTTTTGTTTCTTAACTTG 57.695 30.769 0.00 0.00 35.24 3.16
2835 5455 8.896320 AACTTGGTTGTTTTGTTTCTTAACTT 57.104 26.923 0.00 0.00 35.24 2.66
2836 5456 9.984190 TTAACTTGGTTGTTTTGTTTCTTAACT 57.016 25.926 0.00 0.00 35.24 2.24
2840 5460 9.719355 AATCTTAACTTGGTTGTTTTGTTTCTT 57.281 25.926 0.00 0.00 0.00 2.52
2847 5467 9.423061 GCATCATAATCTTAACTTGGTTGTTTT 57.577 29.630 0.00 0.00 0.00 2.43
2848 5468 8.584157 TGCATCATAATCTTAACTTGGTTGTTT 58.416 29.630 0.00 0.00 0.00 2.83
2933 5950 6.455647 TGAGTTATATGAGATTACCCGCTTG 58.544 40.000 0.00 0.00 0.00 4.01
2986 6003 5.472148 CACATTAAGGTGACATGTTTGCAT 58.528 37.500 14.95 0.00 41.32 3.96
3028 6045 2.757314 TGTGCAACATTGTTGAGTGGAA 59.243 40.909 29.04 8.27 45.67 3.53
3051 6072 8.833231 TCTAGTGGAAATGACTAAGTCTTTTG 57.167 34.615 0.00 0.00 39.08 2.44
3139 6162 9.772973 AGAACAGAAACTGTACATACAAATACA 57.227 29.630 4.84 0.00 44.62 2.29
3141 6164 9.990360 TGAGAACAGAAACTGTACATACAAATA 57.010 29.630 4.84 0.00 44.62 1.40
3142 6165 8.902540 TGAGAACAGAAACTGTACATACAAAT 57.097 30.769 4.84 0.00 44.62 2.32
3143 6166 8.902540 ATGAGAACAGAAACTGTACATACAAA 57.097 30.769 4.84 0.00 44.62 2.83
3144 6167 9.419297 GTATGAGAACAGAAACTGTACATACAA 57.581 33.333 26.57 12.26 44.62 2.41
3228 6258 5.152923 TGATAAAACGCGTGTTGTTGTAA 57.847 34.783 24.69 3.52 38.62 2.41
3237 6267 7.903452 TTACTACTAGATGATAAAACGCGTG 57.097 36.000 14.98 0.00 0.00 5.34
3238 6268 8.915871 TTTTACTACTAGATGATAAAACGCGT 57.084 30.769 5.58 5.58 0.00 6.01
3275 6305 5.685599 GCCCATTGACCTGCATTGATTAATT 60.686 40.000 0.00 0.00 31.17 1.40
3277 6307 3.132646 GCCCATTGACCTGCATTGATTAA 59.867 43.478 0.00 0.00 31.17 1.40
3279 6309 1.483415 GCCCATTGACCTGCATTGATT 59.517 47.619 0.00 0.00 31.17 2.57
3281 6311 1.314534 CGCCCATTGACCTGCATTGA 61.315 55.000 0.00 0.00 31.17 2.57
3282 6312 1.140161 CGCCCATTGACCTGCATTG 59.860 57.895 0.00 0.00 0.00 2.82
3283 6313 1.304381 ACGCCCATTGACCTGCATT 60.304 52.632 0.00 0.00 0.00 3.56
3293 6324 1.485294 TACCAGACACCACGCCCATT 61.485 55.000 0.00 0.00 0.00 3.16
3446 6477 1.486310 AGCGTGGGAAATAGATGAGCA 59.514 47.619 0.00 0.00 0.00 4.26
3467 6498 3.204827 CGCAAAGCATCCCTCCCG 61.205 66.667 0.00 0.00 0.00 5.14
3474 6505 3.521796 GAGGGGCCGCAAAGCATC 61.522 66.667 23.39 5.61 0.00 3.91
3503 6534 2.411504 TGACGATCATGGCCGACGA 61.412 57.895 13.13 0.00 0.00 4.20
3524 6555 1.527696 CTTGTTTGCATCATCGTCGC 58.472 50.000 0.00 0.00 0.00 5.19
3536 6570 6.802608 AGCATGTAATCATCATCCTTGTTTG 58.197 36.000 0.00 0.00 31.15 2.93
3565 6599 3.091633 AGCCAGCTACCACATCATTTT 57.908 42.857 0.00 0.00 0.00 1.82
3587 6621 7.735321 ACCTATCCTTATATTTACAGGCTGAGT 59.265 37.037 23.66 1.42 0.00 3.41
3614 6656 8.563289 TTTTCATTTTCATTTCAAAAGCATGC 57.437 26.923 10.51 10.51 0.00 4.06
3622 6664 9.570468 TCATTCCCATTTTCATTTTCATTTCAA 57.430 25.926 0.00 0.00 0.00 2.69
3630 6672 9.850198 TTTTCTTCTCATTCCCATTTTCATTTT 57.150 25.926 0.00 0.00 0.00 1.82
3636 6678 7.071071 TGGAGTTTTTCTTCTCATTCCCATTTT 59.929 33.333 0.00 0.00 32.93 1.82
3643 6685 6.377327 TGTGTGGAGTTTTTCTTCTCATTC 57.623 37.500 0.00 0.00 29.45 2.67
3646 6688 6.122277 AGATTGTGTGGAGTTTTTCTTCTCA 58.878 36.000 0.00 0.00 32.93 3.27
3648 6690 6.360618 AGAGATTGTGTGGAGTTTTTCTTCT 58.639 36.000 0.00 0.00 0.00 2.85
3649 6691 6.260936 TGAGAGATTGTGTGGAGTTTTTCTTC 59.739 38.462 0.00 0.00 0.00 2.87
3650 6692 6.122277 TGAGAGATTGTGTGGAGTTTTTCTT 58.878 36.000 0.00 0.00 0.00 2.52
3651 6693 5.684704 TGAGAGATTGTGTGGAGTTTTTCT 58.315 37.500 0.00 0.00 0.00 2.52
3652 6694 6.260936 TCTTGAGAGATTGTGTGGAGTTTTTC 59.739 38.462 0.00 0.00 0.00 2.29
3653 6695 6.038714 GTCTTGAGAGATTGTGTGGAGTTTTT 59.961 38.462 0.00 0.00 33.70 1.94
3686 6728 2.605338 GCGCAACAAGTCATCACATGTT 60.605 45.455 0.30 0.00 43.58 2.71
3706 6748 3.423749 CCCTTAGCCTACCTCTAGTAGC 58.576 54.545 0.00 0.00 46.21 3.58
3737 6779 1.936767 ATGGGTAGCACACATGGGGG 61.937 60.000 0.00 0.00 41.44 5.40
3739 6781 1.477700 CAAATGGGTAGCACACATGGG 59.522 52.381 5.03 0.00 42.34 4.00
3741 6783 2.164219 GGACAAATGGGTAGCACACATG 59.836 50.000 5.03 0.00 42.34 3.21
3748 6791 2.831526 ACCAAATGGACAAATGGGTAGC 59.168 45.455 6.42 0.00 37.26 3.58
3751 6794 1.892474 CGACCAAATGGACAAATGGGT 59.108 47.619 6.42 0.00 37.26 4.51
3762 6805 5.637006 TCACCCTATTTTTCGACCAAATG 57.363 39.130 10.70 3.36 0.00 2.32
3770 6813 7.822658 TGGTAAGAAAATCACCCTATTTTTCG 58.177 34.615 0.00 0.00 41.79 3.46
3778 6822 3.245586 TGCCATGGTAAGAAAATCACCCT 60.246 43.478 14.67 0.00 0.00 4.34
3782 6826 6.418057 AAAAGTGCCATGGTAAGAAAATCA 57.582 33.333 14.67 0.00 0.00 2.57
3807 6858 9.300681 AGAAATTCAATCCTAACAGACAAATGA 57.699 29.630 0.00 0.00 0.00 2.57
3821 6875 8.925338 TCCCTCTAGTACTTAGAAATTCAATCC 58.075 37.037 0.00 0.00 37.93 3.01
3828 6882 6.393440 TCCCTCTCCCTCTAGTACTTAGAAAT 59.607 42.308 0.00 0.00 37.93 2.17
3832 6886 4.506095 GCTCCCTCTCCCTCTAGTACTTAG 60.506 54.167 0.00 0.00 0.00 2.18
3833 6887 3.395273 GCTCCCTCTCCCTCTAGTACTTA 59.605 52.174 0.00 0.00 0.00 2.24
3881 6935 8.927675 TTGCCCACTAAAATCGGTTATATTAT 57.072 30.769 0.00 0.00 0.00 1.28
3882 6936 8.927675 ATTGCCCACTAAAATCGGTTATATTA 57.072 30.769 0.00 0.00 0.00 0.98
3883 6937 7.833285 ATTGCCCACTAAAATCGGTTATATT 57.167 32.000 0.00 0.00 0.00 1.28
3884 6938 7.833285 AATTGCCCACTAAAATCGGTTATAT 57.167 32.000 0.00 0.00 0.00 0.86
3885 6939 7.648039 AAATTGCCCACTAAAATCGGTTATA 57.352 32.000 0.00 0.00 0.00 0.98
3886 6940 6.538945 AAATTGCCCACTAAAATCGGTTAT 57.461 33.333 0.00 0.00 0.00 1.89
3887 6941 5.986501 AAATTGCCCACTAAAATCGGTTA 57.013 34.783 0.00 0.00 0.00 2.85
3888 6942 4.882842 AAATTGCCCACTAAAATCGGTT 57.117 36.364 0.00 0.00 0.00 4.44
3889 6943 4.282195 TCAAAATTGCCCACTAAAATCGGT 59.718 37.500 0.00 0.00 0.00 4.69
3890 6944 4.815269 TCAAAATTGCCCACTAAAATCGG 58.185 39.130 0.00 0.00 0.00 4.18
3891 6945 5.163963 GCTTCAAAATTGCCCACTAAAATCG 60.164 40.000 0.00 0.00 0.00 3.34
3892 6946 5.700373 TGCTTCAAAATTGCCCACTAAAATC 59.300 36.000 0.00 0.00 0.00 2.17
3893 6947 5.619220 TGCTTCAAAATTGCCCACTAAAAT 58.381 33.333 0.00 0.00 0.00 1.82
3894 6948 5.028549 TGCTTCAAAATTGCCCACTAAAA 57.971 34.783 0.00 0.00 0.00 1.52
3895 6949 4.679373 TGCTTCAAAATTGCCCACTAAA 57.321 36.364 0.00 0.00 0.00 1.85
3896 6950 4.376146 GTTGCTTCAAAATTGCCCACTAA 58.624 39.130 0.00 0.00 0.00 2.24
3897 6951 3.551863 CGTTGCTTCAAAATTGCCCACTA 60.552 43.478 0.00 0.00 0.00 2.74
3898 6952 2.802774 CGTTGCTTCAAAATTGCCCACT 60.803 45.455 0.00 0.00 0.00 4.00
3899 6953 1.526464 CGTTGCTTCAAAATTGCCCAC 59.474 47.619 0.00 0.00 0.00 4.61
3911 6965 3.915536 ACTCCTAGAAAGTCGTTGCTTC 58.084 45.455 0.00 0.00 0.00 3.86
3918 6972 6.924060 TCTTTGAAGAAACTCCTAGAAAGTCG 59.076 38.462 0.00 0.00 30.73 4.18
3932 6986 9.840427 CTTTACTTGTCAAGTTCTTTGAAGAAA 57.160 29.630 22.81 12.46 46.85 2.52
3939 6993 6.547510 AGATGCCTTTACTTGTCAAGTTCTTT 59.452 34.615 22.81 0.77 42.81 2.52
3940 6994 6.064717 AGATGCCTTTACTTGTCAAGTTCTT 58.935 36.000 22.81 1.15 42.81 2.52
3957 7011 0.179062 GATCTGCGTTGGAGATGCCT 60.179 55.000 5.51 0.00 39.64 4.75
3958 7012 1.162800 GGATCTGCGTTGGAGATGCC 61.163 60.000 5.51 3.88 39.64 4.40
3959 7013 1.162800 GGGATCTGCGTTGGAGATGC 61.163 60.000 10.55 10.55 37.51 3.91
3985 7039 1.135527 TCGTGAATGGATACGGTGTCC 59.864 52.381 16.20 16.20 40.48 4.02
4005 7059 2.514458 GACCCATGTCCAGATTGGTT 57.486 50.000 0.00 0.00 39.03 3.67
4021 7075 1.436336 CCGTATCAGTGTCCGGACC 59.564 63.158 31.19 21.56 43.01 4.46
4067 7129 1.438651 CATCAAATGTGACCGGACGT 58.561 50.000 9.46 0.00 36.31 4.34
4069 7131 1.164411 TGCATCAAATGTGACCGGAC 58.836 50.000 9.46 1.07 36.31 4.79
4072 7134 6.145209 TGTTTAATTTGCATCAAATGTGACCG 59.855 34.615 5.65 0.00 42.32 4.79
4084 7146 8.449251 AGTTGTCCAATTTGTTTAATTTGCAT 57.551 26.923 0.00 0.00 34.19 3.96
4093 7155 8.558973 TTGAATGAAAGTTGTCCAATTTGTTT 57.441 26.923 0.00 0.00 0.00 2.83
4149 7211 6.959639 ATGTTATCCGGTTTAGATGCAAAT 57.040 33.333 0.00 0.00 0.00 2.32
4162 7224 7.586300 GTCGAAAATGTAATGAATGTTATCCGG 59.414 37.037 0.00 0.00 0.00 5.14
4164 7226 9.950680 ATGTCGAAAATGTAATGAATGTTATCC 57.049 29.630 0.00 0.00 0.00 2.59
4220 7282 1.003866 GGCGTCGGCAATCATTTAGAC 60.004 52.381 14.73 0.00 42.47 2.59
4231 7293 3.053291 GTGAAATGGGCGTCGGCA 61.053 61.111 21.23 7.24 42.47 5.69
4232 7294 2.406616 ATGTGAAATGGGCGTCGGC 61.407 57.895 10.88 10.88 38.90 5.54
4236 7298 1.473677 CATGTCATGTGAAATGGGCGT 59.526 47.619 4.53 0.00 36.38 5.68
4238 7300 2.756760 AGACATGTCATGTGAAATGGGC 59.243 45.455 27.02 6.10 45.03 5.36
4240 7302 4.142315 GGGAAGACATGTCATGTGAAATGG 60.142 45.833 27.02 0.00 45.03 3.16
4245 7307 1.984424 TGGGGAAGACATGTCATGTGA 59.016 47.619 27.02 4.17 45.03 3.58
4285 7347 4.570663 GAGGATCACGGCCGGTCG 62.571 72.222 29.88 29.88 33.17 4.79
4286 7348 3.148279 AGAGGATCACGGCCGGTC 61.148 66.667 31.76 22.80 37.82 4.79
4287 7349 3.461773 CAGAGGATCACGGCCGGT 61.462 66.667 31.76 15.41 37.82 5.28
4294 7356 2.235898 AGCTTCACTTCCAGAGGATCAC 59.764 50.000 0.00 0.00 37.82 3.06
4301 7363 3.557898 CCTGCTTAAGCTTCACTTCCAGA 60.558 47.826 26.90 2.45 42.66 3.86
4304 7366 3.059352 TCCTGCTTAAGCTTCACTTCC 57.941 47.619 26.90 0.00 42.66 3.46
4305 7367 3.438434 CCTTCCTGCTTAAGCTTCACTTC 59.562 47.826 26.90 0.00 42.66 3.01
4306 7368 3.416156 CCTTCCTGCTTAAGCTTCACTT 58.584 45.455 26.90 0.00 42.66 3.16
4307 7369 2.290577 CCCTTCCTGCTTAAGCTTCACT 60.291 50.000 26.90 0.00 42.66 3.41
4308 7370 2.087646 CCCTTCCTGCTTAAGCTTCAC 58.912 52.381 26.90 0.00 42.66 3.18
4309 7371 1.985159 TCCCTTCCTGCTTAAGCTTCA 59.015 47.619 26.90 7.39 42.66 3.02
4310 7372 2.789409 TCCCTTCCTGCTTAAGCTTC 57.211 50.000 26.90 0.19 42.66 3.86
4311 7373 3.746792 ATTCCCTTCCTGCTTAAGCTT 57.253 42.857 26.90 3.48 42.66 3.74
4312 7374 4.862641 TTATTCCCTTCCTGCTTAAGCT 57.137 40.909 26.90 6.40 42.66 3.74
4313 7375 5.182190 GCTATTATTCCCTTCCTGCTTAAGC 59.818 44.000 20.84 20.84 42.50 3.09
4314 7376 5.707764 GGCTATTATTCCCTTCCTGCTTAAG 59.292 44.000 0.00 0.00 0.00 1.85
4315 7377 5.372661 AGGCTATTATTCCCTTCCTGCTTAA 59.627 40.000 0.00 0.00 0.00 1.85
4316 7378 4.913968 AGGCTATTATTCCCTTCCTGCTTA 59.086 41.667 0.00 0.00 0.00 3.09
4317 7379 3.724209 AGGCTATTATTCCCTTCCTGCTT 59.276 43.478 0.00 0.00 0.00 3.91
4318 7380 3.329225 GAGGCTATTATTCCCTTCCTGCT 59.671 47.826 0.00 0.00 0.00 4.24
4319 7381 3.560239 GGAGGCTATTATTCCCTTCCTGC 60.560 52.174 0.00 0.00 0.00 4.85
4320 7382 3.307059 CGGAGGCTATTATTCCCTTCCTG 60.307 52.174 0.00 0.00 0.00 3.86
4321 7383 2.907042 CGGAGGCTATTATTCCCTTCCT 59.093 50.000 0.00 0.00 0.00 3.36
4322 7384 2.615747 GCGGAGGCTATTATTCCCTTCC 60.616 54.545 0.00 0.00 35.83 3.46
4323 7385 2.701107 GCGGAGGCTATTATTCCCTTC 58.299 52.381 0.00 0.00 35.83 3.46
4324 7386 2.861147 GCGGAGGCTATTATTCCCTT 57.139 50.000 0.00 0.00 35.83 3.95
4349 7411 1.669115 GGTGAGCTTGCTCGCTTCA 60.669 57.895 27.84 6.74 41.08 3.02
4367 7429 1.597027 GTGGGATCATAACCGGCCG 60.597 63.158 21.04 21.04 0.00 6.13
4370 7432 1.211949 ACTTGGTGGGATCATAACCGG 59.788 52.381 0.00 0.00 36.73 5.28
4373 7435 5.193679 AGCTAAACTTGGTGGGATCATAAC 58.806 41.667 0.00 0.00 0.00 1.89
4380 7442 2.814097 GCTGAAGCTAAACTTGGTGGGA 60.814 50.000 0.00 0.00 39.29 4.37
4388 7450 0.250513 CCTCCCGCTGAAGCTAAACT 59.749 55.000 0.10 0.00 39.32 2.66
4425 7487 2.279935 AATTACTGCGTTCCCCAACA 57.720 45.000 0.00 0.00 32.14 3.33
4426 7488 2.554893 TGAAATTACTGCGTTCCCCAAC 59.445 45.455 0.00 0.00 0.00 3.77
4427 7489 2.865079 TGAAATTACTGCGTTCCCCAA 58.135 42.857 0.00 0.00 0.00 4.12
4428 7490 2.570415 TGAAATTACTGCGTTCCCCA 57.430 45.000 0.00 0.00 0.00 4.96
4429 7491 3.926821 TTTGAAATTACTGCGTTCCCC 57.073 42.857 0.00 0.00 0.00 4.81
4449 7511 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
4461 7523 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
4462 7524 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
4463 7525 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
4464 7526 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
4465 7527 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
4466 7528 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
4467 7529 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
4468 7530 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
4469 7531 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
4470 7532 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
4471 7533 3.566742 TGTTGCTATGCATCACCATGATC 59.433 43.478 0.19 0.00 38.76 2.92
4472 7534 3.558033 TGTTGCTATGCATCACCATGAT 58.442 40.909 0.19 0.00 38.76 2.45
4473 7535 3.002038 TGTTGCTATGCATCACCATGA 57.998 42.857 0.19 0.00 38.76 3.07
4474 7536 3.379057 TCTTGTTGCTATGCATCACCATG 59.621 43.478 0.19 0.00 37.87 3.66
4475 7537 3.623703 TCTTGTTGCTATGCATCACCAT 58.376 40.909 0.19 0.00 37.87 3.55
4476 7538 3.070476 TCTTGTTGCTATGCATCACCA 57.930 42.857 0.19 0.00 37.87 4.17
4477 7539 3.243301 CCATCTTGTTGCTATGCATCACC 60.243 47.826 0.19 0.00 37.87 4.02
4478 7540 3.243301 CCCATCTTGTTGCTATGCATCAC 60.243 47.826 0.19 0.00 37.87 3.06
4479 7541 2.953648 CCCATCTTGTTGCTATGCATCA 59.046 45.455 0.19 0.00 38.76 3.07
4480 7542 3.216800 TCCCATCTTGTTGCTATGCATC 58.783 45.455 0.19 0.00 38.76 3.91
4481 7543 3.117776 TCTCCCATCTTGTTGCTATGCAT 60.118 43.478 3.79 3.79 38.76 3.96
4482 7544 2.239402 TCTCCCATCTTGTTGCTATGCA 59.761 45.455 0.00 0.00 36.47 3.96
4483 7545 2.877168 CTCTCCCATCTTGTTGCTATGC 59.123 50.000 0.00 0.00 0.00 3.14
4484 7546 4.148128 ACTCTCCCATCTTGTTGCTATG 57.852 45.455 0.00 0.00 0.00 2.23
4485 7547 6.126652 ACAATACTCTCCCATCTTGTTGCTAT 60.127 38.462 0.00 0.00 0.00 2.97
4486 7548 5.189736 ACAATACTCTCCCATCTTGTTGCTA 59.810 40.000 0.00 0.00 0.00 3.49
4487 7549 4.018960 ACAATACTCTCCCATCTTGTTGCT 60.019 41.667 0.00 0.00 0.00 3.91
4488 7550 4.265073 ACAATACTCTCCCATCTTGTTGC 58.735 43.478 0.00 0.00 0.00 4.17
4489 7551 5.738909 AGACAATACTCTCCCATCTTGTTG 58.261 41.667 0.00 0.00 0.00 3.33
4490 7552 6.670027 AGTAGACAATACTCTCCCATCTTGTT 59.330 38.462 0.00 0.00 0.00 2.83
4491 7553 6.198639 AGTAGACAATACTCTCCCATCTTGT 58.801 40.000 0.00 0.00 0.00 3.16
4492 7554 6.723298 AGTAGACAATACTCTCCCATCTTG 57.277 41.667 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.