Multiple sequence alignment - TraesCS7A01G428200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G428200 chr7A 100.000 4639 0 0 1 4639 621563527 621568165 0.000000e+00 8567.0
1 TraesCS7A01G428200 chr7A 87.442 215 26 1 414 627 667948428 667948642 3.580000e-61 246.0
2 TraesCS7A01G428200 chr7A 83.083 266 40 4 362 625 384410166 384409904 2.160000e-58 237.0
3 TraesCS7A01G428200 chr7A 82.796 279 33 5 362 627 68330365 68330641 7.760000e-58 235.0
4 TraesCS7A01G428200 chr7A 95.556 45 2 0 1496 1540 646584990 646584946 6.440000e-09 73.1
5 TraesCS7A01G428200 chr7B 91.226 1003 48 23 635 1612 583381815 583382802 0.000000e+00 1328.0
6 TraesCS7A01G428200 chr7B 90.113 799 43 12 3194 3978 583384545 583385321 0.000000e+00 1005.0
7 TraesCS7A01G428200 chr7B 88.914 442 31 5 4198 4639 583385735 583386158 3.180000e-146 529.0
8 TraesCS7A01G428200 chr7B 84.058 552 33 28 1621 2168 583382847 583383347 9.030000e-132 481.0
9 TraesCS7A01G428200 chr7B 87.406 397 20 10 2289 2661 583383401 583383791 3.320000e-116 429.0
10 TraesCS7A01G428200 chr7B 91.611 298 17 4 2895 3190 583383896 583384187 5.590000e-109 405.0
11 TraesCS7A01G428200 chr7B 94.146 205 7 4 4004 4206 583385437 583385638 1.620000e-79 307.0
12 TraesCS7A01G428200 chr7B 82.289 367 26 17 18 362 583381464 583381813 9.830000e-72 281.0
13 TraesCS7A01G428200 chr7B 99.200 125 1 0 2657 2781 7237502 7237626 4.670000e-55 226.0
14 TraesCS7A01G428200 chr7B 95.556 45 2 0 1496 1540 610479020 610479064 6.440000e-09 73.1
15 TraesCS7A01G428200 chr7B 93.333 45 3 0 1496 1540 610737313 610737269 3.000000e-07 67.6
16 TraesCS7A01G428200 chr7D 93.658 883 33 11 3200 4080 540367242 540366381 0.000000e+00 1299.0
17 TraesCS7A01G428200 chr7D 89.717 953 46 22 635 1549 540370294 540369356 0.000000e+00 1170.0
18 TraesCS7A01G428200 chr7D 85.185 486 17 25 2226 2659 540368705 540368223 9.160000e-122 448.0
19 TraesCS7A01G428200 chr7D 89.560 364 21 8 1856 2211 540369043 540368689 3.290000e-121 446.0
20 TraesCS7A01G428200 chr7D 91.475 305 13 7 2896 3192 540367855 540367556 1.550000e-109 407.0
21 TraesCS7A01G428200 chr7D 80.253 395 34 22 1 362 540370679 540370296 1.660000e-64 257.0
22 TraesCS7A01G428200 chr7D 95.556 45 2 0 1496 1540 561757776 561757732 6.440000e-09 73.1
23 TraesCS7A01G428200 chr7D 97.436 39 1 0 1496 1534 37234705 37234667 3.000000e-07 67.6
24 TraesCS7A01G428200 chr2A 81.340 418 66 6 3224 3638 729982649 729983057 3.460000e-86 329.0
25 TraesCS7A01G428200 chr2A 84.892 278 29 3 362 627 671523590 671523314 7.650000e-68 268.0
26 TraesCS7A01G428200 chr2A 84.588 279 30 5 362 628 665832318 665832041 9.900000e-67 265.0
27 TraesCS7A01G428200 chr2A 84.387 269 38 4 362 627 771681732 771681999 1.280000e-65 261.0
28 TraesCS7A01G428200 chr2A 100.000 125 0 0 2657 2781 751753477 751753353 1.000000e-56 231.0
29 TraesCS7A01G428200 chr2D 80.952 420 64 10 3224 3638 596251028 596251436 7.490000e-83 318.0
30 TraesCS7A01G428200 chr2D 83.456 272 40 5 362 631 166862626 166862358 9.970000e-62 248.0
31 TraesCS7A01G428200 chr2D 80.147 136 25 2 1406 1540 596248520 596248654 2.950000e-17 100.0
32 TraesCS7A01G428200 chr2B 80.476 420 66 11 3224 3638 725110828 725111236 1.620000e-79 307.0
33 TraesCS7A01G428200 chr2B 98.450 129 2 0 2653 2781 641195167 641195295 1.300000e-55 228.0
34 TraesCS7A01G428200 chr2B 72.853 361 64 25 1196 1540 725107527 725107869 4.940000e-15 93.5
35 TraesCS7A01G428200 chr6A 85.348 273 30 7 362 627 356210500 356210769 1.640000e-69 274.0
36 TraesCS7A01G428200 chr6A 99.200 125 1 0 2657 2781 106697783 106697659 4.670000e-55 226.0
37 TraesCS7A01G428200 chr6A 97.727 132 2 1 2651 2781 473842550 473842681 4.670000e-55 226.0
38 TraesCS7A01G428200 chr3A 84.946 279 29 3 361 627 547412938 547412661 2.130000e-68 270.0
39 TraesCS7A01G428200 chr3A 82.374 278 33 6 362 627 42040645 42040372 1.300000e-55 228.0
40 TraesCS7A01G428200 chr5B 84.173 278 30 4 362 627 658775258 658775533 1.660000e-64 257.0
41 TraesCS7A01G428200 chr5B 99.200 125 1 0 2657 2781 73827477 73827353 4.670000e-55 226.0
42 TraesCS7A01G428200 chr5B 75.347 288 46 13 364 627 546146003 546146289 1.050000e-21 115.0
43 TraesCS7A01G428200 chr5B 78.462 130 22 6 1131 1258 580849422 580849547 3.850000e-11 80.5
44 TraesCS7A01G428200 chr5B 73.853 218 45 12 1064 1273 580843573 580843786 4.980000e-10 76.8
45 TraesCS7A01G428200 chr5B 94.872 39 2 0 4442 4480 531944710 531944672 1.390000e-05 62.1
46 TraesCS7A01G428200 chr6B 83.929 280 30 4 361 628 668141603 668141879 2.140000e-63 254.0
47 TraesCS7A01G428200 chr6B 100.000 125 0 0 2657 2781 484525136 484525260 1.000000e-56 231.0
48 TraesCS7A01G428200 chr1A 83.571 280 31 7 362 628 244984901 244984624 9.970000e-62 248.0
49 TraesCS7A01G428200 chr1A 99.200 125 1 0 2657 2781 551482043 551481919 4.670000e-55 226.0
50 TraesCS7A01G428200 chr3B 99.225 129 1 0 2653 2781 489366246 489366374 2.790000e-57 233.0
51 TraesCS7A01G428200 chr3B 96.721 61 1 1 362 422 820328926 820328985 2.950000e-17 100.0
52 TraesCS7A01G428200 chr5D 76.974 152 28 7 1125 1273 473848435 473848582 3.850000e-11 80.5
53 TraesCS7A01G428200 chr5A 75.269 186 36 10 1092 1271 593340072 593340253 3.850000e-11 80.5
54 TraesCS7A01G428200 chr1D 93.617 47 3 0 1217 1263 62858094 62858140 2.320000e-08 71.3
55 TraesCS7A01G428200 chrUn 97.436 39 1 0 1496 1534 90726549 90726511 3.000000e-07 67.6
56 TraesCS7A01G428200 chrUn 97.436 39 1 0 1496 1534 90939094 90939056 3.000000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G428200 chr7A 621563527 621568165 4638 False 8567.000000 8567 100.000000 1 4639 1 chr7A.!!$F2 4638
1 TraesCS7A01G428200 chr7B 583381464 583386158 4694 False 595.625000 1328 88.720375 18 4639 8 chr7B.!!$F3 4621
2 TraesCS7A01G428200 chr7D 540366381 540370679 4298 True 671.166667 1299 88.308000 1 4080 6 chr7D.!!$R3 4079
3 TraesCS7A01G428200 chr2D 596248520 596251436 2916 False 209.000000 318 80.549500 1406 3638 2 chr2D.!!$F1 2232
4 TraesCS7A01G428200 chr2B 725107527 725111236 3709 False 200.250000 307 76.664500 1196 3638 2 chr2B.!!$F2 2442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 395 0.108089 GGCGTTGGGGTTTTGTTTGT 60.108 50.0 0.0 0.0 0.00 2.83 F
890 936 0.324830 GCTACAGGGAGGGAGAGTGT 60.325 60.0 0.0 0.0 0.00 3.55 F
1849 2128 0.033991 TAGCCACGAGCCTTCTCTCT 60.034 55.0 0.0 0.0 45.47 3.10 F
2695 3059 0.038310 GGCCAAGCCTACCTTTGAGT 59.962 55.0 0.0 0.0 46.69 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1959 0.538977 CATGTCAGCCCCATCCATCC 60.539 60.0 0.0 0.0 0.00 3.51 R
2741 3105 0.034089 GCCATACCCTGCCTTTGAGT 60.034 55.0 0.0 0.0 0.00 3.41 R
2742 3106 0.034186 TGCCATACCCTGCCTTTGAG 60.034 55.0 0.0 0.0 0.00 3.02 R
4570 7624 0.095935 CGAAGCTGAAATGGCTGTCG 59.904 55.0 0.0 0.0 40.19 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 27 4.754667 GTGGGACTCCGCCGGTTC 62.755 72.222 1.63 0.43 37.58 3.62
50 56 5.117355 TCGAATACTAAAGCCTATCCGTG 57.883 43.478 0.00 0.00 0.00 4.94
204 228 4.117685 CCCTACGTAGTTTAATCACAGGC 58.882 47.826 20.73 0.00 37.78 4.85
206 230 4.804139 CCTACGTAGTTTAATCACAGGCTG 59.196 45.833 20.73 14.16 37.78 4.85
207 231 4.530710 ACGTAGTTTAATCACAGGCTGA 57.469 40.909 23.66 0.00 37.78 4.26
208 232 5.086104 ACGTAGTTTAATCACAGGCTGAT 57.914 39.130 23.66 1.80 37.78 2.90
250 275 6.687105 GCGTACTGCATTCCTTTAAATTAGTG 59.313 38.462 5.07 0.00 45.45 2.74
251 276 7.186804 CGTACTGCATTCCTTTAAATTAGTGG 58.813 38.462 0.00 0.00 0.00 4.00
290 315 4.261197 GGTTGCTTAGTGTTCCTCTGTTTG 60.261 45.833 0.00 0.00 0.00 2.93
300 325 5.296780 GTGTTCCTCTGTTTGTTTCTGATGA 59.703 40.000 0.00 0.00 0.00 2.92
301 326 5.528690 TGTTCCTCTGTTTGTTTCTGATGAG 59.471 40.000 0.00 0.00 0.00 2.90
305 330 1.879380 TGTTTGTTTCTGATGAGGGCG 59.121 47.619 0.00 0.00 0.00 6.13
306 331 2.151202 GTTTGTTTCTGATGAGGGCGA 58.849 47.619 0.00 0.00 0.00 5.54
307 332 2.099141 TTGTTTCTGATGAGGGCGAG 57.901 50.000 0.00 0.00 0.00 5.03
311 336 1.045350 TTCTGATGAGGGCGAGGAGG 61.045 60.000 0.00 0.00 0.00 4.30
315 340 0.178987 GATGAGGGCGAGGAGGAGTA 60.179 60.000 0.00 0.00 0.00 2.59
317 342 1.279749 TGAGGGCGAGGAGGAGTAGA 61.280 60.000 0.00 0.00 0.00 2.59
318 343 0.536460 GAGGGCGAGGAGGAGTAGAG 60.536 65.000 0.00 0.00 0.00 2.43
362 394 0.108138 TGGCGTTGGGGTTTTGTTTG 60.108 50.000 0.00 0.00 0.00 2.93
363 395 0.108089 GGCGTTGGGGTTTTGTTTGT 60.108 50.000 0.00 0.00 0.00 2.83
364 396 1.676314 GGCGTTGGGGTTTTGTTTGTT 60.676 47.619 0.00 0.00 0.00 2.83
365 397 2.077627 GCGTTGGGGTTTTGTTTGTTT 58.922 42.857 0.00 0.00 0.00 2.83
366 398 2.159639 GCGTTGGGGTTTTGTTTGTTTG 60.160 45.455 0.00 0.00 0.00 2.93
367 399 2.416893 CGTTGGGGTTTTGTTTGTTTGG 59.583 45.455 0.00 0.00 0.00 3.28
368 400 3.413327 GTTGGGGTTTTGTTTGTTTGGT 58.587 40.909 0.00 0.00 0.00 3.67
369 401 3.790089 TGGGGTTTTGTTTGTTTGGTT 57.210 38.095 0.00 0.00 0.00 3.67
370 402 3.676093 TGGGGTTTTGTTTGTTTGGTTC 58.324 40.909 0.00 0.00 0.00 3.62
371 403 3.072476 TGGGGTTTTGTTTGTTTGGTTCA 59.928 39.130 0.00 0.00 0.00 3.18
372 404 4.263506 TGGGGTTTTGTTTGTTTGGTTCAT 60.264 37.500 0.00 0.00 0.00 2.57
373 405 5.045869 TGGGGTTTTGTTTGTTTGGTTCATA 60.046 36.000 0.00 0.00 0.00 2.15
374 406 5.880887 GGGGTTTTGTTTGTTTGGTTCATAA 59.119 36.000 0.00 0.00 0.00 1.90
375 407 6.037720 GGGGTTTTGTTTGTTTGGTTCATAAG 59.962 38.462 0.00 0.00 0.00 1.73
376 408 6.596106 GGGTTTTGTTTGTTTGGTTCATAAGT 59.404 34.615 0.00 0.00 0.00 2.24
377 409 7.201574 GGGTTTTGTTTGTTTGGTTCATAAGTC 60.202 37.037 0.00 0.00 0.00 3.01
378 410 7.547722 GGTTTTGTTTGTTTGGTTCATAAGTCT 59.452 33.333 0.00 0.00 0.00 3.24
379 411 8.931775 GTTTTGTTTGTTTGGTTCATAAGTCTT 58.068 29.630 0.00 0.00 0.00 3.01
382 414 9.796120 TTGTTTGTTTGGTTCATAAGTCTTAAG 57.204 29.630 0.00 0.00 0.00 1.85
383 415 9.179909 TGTTTGTTTGGTTCATAAGTCTTAAGA 57.820 29.630 0.00 0.00 0.00 2.10
418 450 7.832769 AGTCTCAACTTATAAGTCTCAAGTCC 58.167 38.462 18.28 8.73 38.57 3.85
419 451 7.036829 GTCTCAACTTATAAGTCTCAAGTCCC 58.963 42.308 18.28 4.23 38.57 4.46
420 452 6.954684 TCTCAACTTATAAGTCTCAAGTCCCT 59.045 38.462 18.28 0.00 38.57 4.20
421 453 8.114102 TCTCAACTTATAAGTCTCAAGTCCCTA 58.886 37.037 18.28 0.00 38.57 3.53
422 454 8.064336 TCAACTTATAAGTCTCAAGTCCCTAC 57.936 38.462 18.28 0.00 38.57 3.18
423 455 7.123847 TCAACTTATAAGTCTCAAGTCCCTACC 59.876 40.741 18.28 0.00 38.57 3.18
424 456 6.743788 ACTTATAAGTCTCAAGTCCCTACCT 58.256 40.000 12.50 0.00 32.86 3.08
425 457 6.608002 ACTTATAAGTCTCAAGTCCCTACCTG 59.392 42.308 12.50 0.00 32.86 4.00
426 458 3.261818 AAGTCTCAAGTCCCTACCTGT 57.738 47.619 0.00 0.00 0.00 4.00
427 459 3.261818 AGTCTCAAGTCCCTACCTGTT 57.738 47.619 0.00 0.00 0.00 3.16
428 460 3.588569 AGTCTCAAGTCCCTACCTGTTT 58.411 45.455 0.00 0.00 0.00 2.83
429 461 3.325135 AGTCTCAAGTCCCTACCTGTTTG 59.675 47.826 0.00 0.00 0.00 2.93
430 462 2.637872 TCTCAAGTCCCTACCTGTTTGG 59.362 50.000 0.00 0.00 42.93 3.28
441 473 2.364972 CCTGTTTGGTTCTTGGGACT 57.635 50.000 0.00 0.00 0.00 3.85
442 474 2.666317 CCTGTTTGGTTCTTGGGACTT 58.334 47.619 0.00 0.00 0.00 3.01
443 475 3.827722 CCTGTTTGGTTCTTGGGACTTA 58.172 45.455 0.00 0.00 0.00 2.24
444 476 4.407365 CCTGTTTGGTTCTTGGGACTTAT 58.593 43.478 0.00 0.00 0.00 1.73
445 477 5.566469 CCTGTTTGGTTCTTGGGACTTATA 58.434 41.667 0.00 0.00 0.00 0.98
446 478 6.007703 CCTGTTTGGTTCTTGGGACTTATAA 58.992 40.000 0.00 0.00 0.00 0.98
447 479 6.151144 CCTGTTTGGTTCTTGGGACTTATAAG 59.849 42.308 11.05 11.05 0.00 1.73
448 480 6.607019 TGTTTGGTTCTTGGGACTTATAAGT 58.393 36.000 18.05 18.05 43.16 2.24
495 527 8.528044 CTGTAAGTCTCTATAAGTCCCTTCTT 57.472 38.462 0.00 0.00 0.00 2.52
496 528 9.629878 CTGTAAGTCTCTATAAGTCCCTTCTTA 57.370 37.037 0.00 0.00 34.94 2.10
497 529 9.986157 TGTAAGTCTCTATAAGTCCCTTCTTAA 57.014 33.333 0.00 0.00 34.28 1.85
500 532 8.990163 AGTCTCTATAAGTCCCTTCTTAAGAG 57.010 38.462 5.12 0.54 37.04 2.85
501 533 8.562635 AGTCTCTATAAGTCCCTTCTTAAGAGT 58.437 37.037 5.12 6.75 37.03 3.24
502 534 8.843262 GTCTCTATAAGTCCCTTCTTAAGAGTC 58.157 40.741 5.12 0.00 37.03 3.36
503 535 8.783903 TCTCTATAAGTCCCTTCTTAAGAGTCT 58.216 37.037 5.12 0.00 37.03 3.24
509 541 8.437274 AAGTCCCTTCTTAAGAGTCTAATTCA 57.563 34.615 5.12 0.00 0.00 2.57
510 542 8.616799 AGTCCCTTCTTAAGAGTCTAATTCAT 57.383 34.615 5.12 0.00 0.00 2.57
511 543 9.716556 AGTCCCTTCTTAAGAGTCTAATTCATA 57.283 33.333 5.12 0.00 0.00 2.15
537 569 8.834749 AGTCTCAAATACCAACTTTAAGTCTC 57.165 34.615 0.00 0.00 0.00 3.36
538 570 8.652290 AGTCTCAAATACCAACTTTAAGTCTCT 58.348 33.333 0.00 0.00 0.00 3.10
539 571 9.924650 GTCTCAAATACCAACTTTAAGTCTCTA 57.075 33.333 0.00 0.00 0.00 2.43
558 590 9.628500 AGTCTCTATAAGTTCTTTTTGTTTGGT 57.372 29.630 0.00 0.00 0.00 3.67
566 598 8.716646 AAGTTCTTTTTGTTTGGTTTAGATGG 57.283 30.769 0.00 0.00 0.00 3.51
567 599 8.073467 AGTTCTTTTTGTTTGGTTTAGATGGA 57.927 30.769 0.00 0.00 0.00 3.41
568 600 8.536175 AGTTCTTTTTGTTTGGTTTAGATGGAA 58.464 29.630 0.00 0.00 0.00 3.53
569 601 9.325198 GTTCTTTTTGTTTGGTTTAGATGGAAT 57.675 29.630 0.00 0.00 0.00 3.01
570 602 9.898152 TTCTTTTTGTTTGGTTTAGATGGAATT 57.102 25.926 0.00 0.00 0.00 2.17
571 603 9.898152 TCTTTTTGTTTGGTTTAGATGGAATTT 57.102 25.926 0.00 0.00 0.00 1.82
610 642 9.603921 TTAAGTCCCTAAACTAATAAATCCGTG 57.396 33.333 0.00 0.00 0.00 4.94
611 643 7.427989 AGTCCCTAAACTAATAAATCCGTGA 57.572 36.000 0.00 0.00 0.00 4.35
612 644 7.854337 AGTCCCTAAACTAATAAATCCGTGAA 58.146 34.615 0.00 0.00 0.00 3.18
613 645 8.323567 AGTCCCTAAACTAATAAATCCGTGAAA 58.676 33.333 0.00 0.00 0.00 2.69
614 646 8.949177 GTCCCTAAACTAATAAATCCGTGAAAA 58.051 33.333 0.00 0.00 0.00 2.29
615 647 8.949177 TCCCTAAACTAATAAATCCGTGAAAAC 58.051 33.333 0.00 0.00 0.00 2.43
616 648 8.732531 CCCTAAACTAATAAATCCGTGAAAACA 58.267 33.333 0.00 0.00 0.00 2.83
620 652 9.804758 AAACTAATAAATCCGTGAAAACAAACA 57.195 25.926 0.00 0.00 0.00 2.83
621 653 8.791355 ACTAATAAATCCGTGAAAACAAACAC 57.209 30.769 0.00 0.00 0.00 3.32
622 654 7.863877 ACTAATAAATCCGTGAAAACAAACACC 59.136 33.333 0.00 0.00 34.05 4.16
623 655 3.446310 AATCCGTGAAAACAAACACCC 57.554 42.857 0.00 0.00 34.05 4.61
624 656 2.131776 TCCGTGAAAACAAACACCCT 57.868 45.000 0.00 0.00 34.05 4.34
625 657 2.018515 TCCGTGAAAACAAACACCCTC 58.981 47.619 0.00 0.00 34.05 4.30
626 658 2.021457 CCGTGAAAACAAACACCCTCT 58.979 47.619 0.00 0.00 34.05 3.69
627 659 2.425668 CCGTGAAAACAAACACCCTCTT 59.574 45.455 0.00 0.00 34.05 2.85
628 660 3.119280 CCGTGAAAACAAACACCCTCTTT 60.119 43.478 0.00 0.00 34.05 2.52
629 661 4.096682 CCGTGAAAACAAACACCCTCTTTA 59.903 41.667 0.00 0.00 34.05 1.85
630 662 5.270853 CGTGAAAACAAACACCCTCTTTAG 58.729 41.667 0.00 0.00 34.05 1.85
631 663 5.163693 CGTGAAAACAAACACCCTCTTTAGT 60.164 40.000 0.00 0.00 34.05 2.24
632 664 6.033966 GTGAAAACAAACACCCTCTTTAGTG 58.966 40.000 0.00 0.00 39.93 2.74
633 665 4.649088 AAACAAACACCCTCTTTAGTGC 57.351 40.909 0.00 0.00 37.51 4.40
674 706 3.221389 CCCCATGCCGATGCCTTG 61.221 66.667 0.00 0.00 36.33 3.61
679 711 2.165167 CCATGCCGATGCCTTGATATT 58.835 47.619 0.00 0.00 36.33 1.28
680 712 2.163010 CCATGCCGATGCCTTGATATTC 59.837 50.000 0.00 0.00 36.33 1.75
688 720 4.922692 CGATGCCTTGATATTCTCTCACTC 59.077 45.833 0.00 0.00 0.00 3.51
878 924 0.525668 CGCCGAGTGTTAGCTACAGG 60.526 60.000 0.00 0.00 37.45 4.00
882 928 1.405821 CGAGTGTTAGCTACAGGGAGG 59.594 57.143 0.00 0.00 37.45 4.30
888 934 1.609626 TAGCTACAGGGAGGGAGAGT 58.390 55.000 0.00 0.00 0.00 3.24
890 936 0.324830 GCTACAGGGAGGGAGAGTGT 60.325 60.000 0.00 0.00 0.00 3.55
892 938 0.784495 TACAGGGAGGGAGAGTGTGT 59.216 55.000 0.00 0.00 0.00 3.72
894 940 0.833834 CAGGGAGGGAGAGTGTGTGT 60.834 60.000 0.00 0.00 0.00 3.72
930 982 4.618927 GCAAGTGCAAGCATCAATTAAGGA 60.619 41.667 0.00 0.00 41.59 3.36
940 1012 3.634397 TCAATTAAGGACAGGCAGAGG 57.366 47.619 0.00 0.00 0.00 3.69
1055 1134 1.928706 GAGAGCTTGCTCCTCGTCGT 61.929 60.000 17.78 0.00 34.56 4.34
1056 1135 1.515304 GAGCTTGCTCCTCGTCGTC 60.515 63.158 11.24 0.00 0.00 4.20
1058 1137 2.561885 CTTGCTCCTCGTCGTCGT 59.438 61.111 1.33 0.00 38.33 4.34
1280 1359 3.358700 CGCGCCGCATACAAAAAC 58.641 55.556 10.75 0.00 0.00 2.43
1283 1362 1.070471 GCGCCGCATACAAAAACCAG 61.070 55.000 3.15 0.00 0.00 4.00
1310 1389 2.928731 GCCTCTAGTGTCTGACTGTTGC 60.929 54.545 9.51 0.00 35.96 4.17
1386 1465 3.785859 GTGCTCATCTCCGGGCCA 61.786 66.667 4.39 0.00 0.00 5.36
1449 1534 2.887568 GCGCTGGACCTCATCACG 60.888 66.667 0.00 0.00 0.00 4.35
1551 1636 2.683859 CGTCGTCCAGCAGGTACGA 61.684 63.158 15.24 15.24 41.66 3.43
1554 1639 1.800315 CGTCCAGCAGGTACGAACG 60.800 63.158 12.50 3.57 39.32 3.95
1557 1654 2.048597 CAGCAGGTACGAACGCCA 60.049 61.111 0.00 0.00 0.00 5.69
1558 1655 2.048503 AGCAGGTACGAACGCCAC 60.049 61.111 0.00 0.00 0.00 5.01
1560 1657 2.433664 CAGGTACGAACGCCACCC 60.434 66.667 12.65 1.04 32.43 4.61
1579 1676 2.655364 CGCACGCGCATAGCTAGT 60.655 61.111 5.73 0.00 45.59 2.57
1616 1716 4.759096 CGCCGCCGCTTTCTTTGG 62.759 66.667 0.00 0.00 0.00 3.28
1617 1717 3.670377 GCCGCCGCTTTCTTTGGT 61.670 61.111 0.00 0.00 0.00 3.67
1621 1721 2.258726 GCCGCTTTCTTTGGTCGGT 61.259 57.895 0.00 0.00 41.89 4.69
1623 1723 1.491563 CGCTTTCTTTGGTCGGTCG 59.508 57.895 0.00 0.00 0.00 4.79
1627 1763 0.598158 TTTCTTTGGTCGGTCGACGG 60.598 55.000 16.37 16.37 45.41 4.79
1661 1797 1.408822 GGTCAATTAGGAGGTGGGCTG 60.409 57.143 0.00 0.00 0.00 4.85
1694 1830 1.134491 CCTAAACCCTCACTTAGCCCG 60.134 57.143 0.00 0.00 0.00 6.13
1717 1853 3.617263 GCTCTCCGTGTGTGTTTATTAGG 59.383 47.826 0.00 0.00 0.00 2.69
1757 1955 2.294791 GCACACCGAGAGACAGCTATAT 59.705 50.000 0.00 0.00 0.00 0.86
1759 1957 3.565902 CACACCGAGAGACAGCTATATGA 59.434 47.826 0.00 0.00 0.00 2.15
1760 1958 4.217334 CACACCGAGAGACAGCTATATGAT 59.783 45.833 0.00 0.00 0.00 2.45
1761 1959 4.217334 ACACCGAGAGACAGCTATATGATG 59.783 45.833 0.00 0.00 38.19 3.07
1846 2125 4.816990 GTAGCCACGAGCCTTCTC 57.183 61.111 0.00 0.00 45.47 2.87
1847 2126 2.194460 GTAGCCACGAGCCTTCTCT 58.806 57.895 0.00 0.00 45.47 3.10
1848 2127 0.101579 GTAGCCACGAGCCTTCTCTC 59.898 60.000 0.00 0.00 45.47 3.20
1849 2128 0.033991 TAGCCACGAGCCTTCTCTCT 60.034 55.000 0.00 0.00 45.47 3.10
1850 2129 1.140804 GCCACGAGCCTTCTCTCTC 59.859 63.158 0.00 0.00 37.19 3.20
1851 2130 1.319614 GCCACGAGCCTTCTCTCTCT 61.320 60.000 0.00 0.00 37.19 3.10
1852 2131 0.738389 CCACGAGCCTTCTCTCTCTC 59.262 60.000 0.00 0.00 37.19 3.20
1853 2132 1.681780 CCACGAGCCTTCTCTCTCTCT 60.682 57.143 0.00 0.00 37.19 3.10
1854 2133 1.670811 CACGAGCCTTCTCTCTCTCTC 59.329 57.143 0.00 0.00 37.19 3.20
1906 2189 0.999228 GTGAGTCAGTGACGACGCAG 60.999 60.000 17.40 0.00 44.72 5.18
2044 2331 4.693095 GCAGCTAGCTAGGATTGGATTAAC 59.307 45.833 18.86 0.96 41.15 2.01
2047 2334 4.693095 GCTAGCTAGGATTGGATTAACTGC 59.307 45.833 22.10 0.00 0.00 4.40
2054 2341 3.583086 GGATTAACTGCCGCCGCC 61.583 66.667 0.00 0.00 0.00 6.13
2056 2343 4.418328 ATTAACTGCCGCCGCCCA 62.418 61.111 0.00 0.00 0.00 5.36
2057 2344 3.929334 ATTAACTGCCGCCGCCCAA 62.929 57.895 0.00 0.00 0.00 4.12
2066 2354 2.811799 GCCGCCCAACAAACAACT 59.188 55.556 0.00 0.00 0.00 3.16
2091 2379 7.727331 ACTACTCGTATACTTGTACTGGATC 57.273 40.000 0.56 0.00 0.00 3.36
2100 2388 5.557891 ACTTGTACTGGATCACGTACTAC 57.442 43.478 18.64 3.07 37.47 2.73
2103 2391 6.314896 ACTTGTACTGGATCACGTACTACTAC 59.685 42.308 18.64 1.99 37.47 2.73
2104 2392 5.982356 TGTACTGGATCACGTACTACTACT 58.018 41.667 18.64 0.00 37.47 2.57
2172 2460 2.093658 ACATCGATCCCACTTGTGGTAC 60.094 50.000 17.35 8.11 0.00 3.34
2173 2461 0.528924 TCGATCCCACTTGTGGTACG 59.471 55.000 17.35 17.30 0.00 3.67
2175 2463 1.473677 CGATCCCACTTGTGGTACGTA 59.526 52.381 17.35 0.00 0.00 3.57
2176 2464 2.479049 CGATCCCACTTGTGGTACGTAG 60.479 54.545 17.35 2.67 0.00 3.51
2177 2465 1.259609 TCCCACTTGTGGTACGTAGG 58.740 55.000 17.35 2.02 0.00 3.18
2178 2466 1.203038 TCCCACTTGTGGTACGTAGGA 60.203 52.381 17.35 4.21 0.00 2.94
2179 2467 1.203994 CCCACTTGTGGTACGTAGGAG 59.796 57.143 17.35 0.00 0.00 3.69
2204 2492 4.822026 ACCGAGGAGAGTAACATTCTTTG 58.178 43.478 0.00 0.00 0.00 2.77
2205 2493 3.619038 CCGAGGAGAGTAACATTCTTTGC 59.381 47.826 0.00 0.00 0.00 3.68
2206 2494 4.499183 CGAGGAGAGTAACATTCTTTGCT 58.501 43.478 0.00 0.00 0.00 3.91
2207 2495 4.328440 CGAGGAGAGTAACATTCTTTGCTG 59.672 45.833 0.00 0.00 0.00 4.41
2208 2496 5.234466 AGGAGAGTAACATTCTTTGCTGT 57.766 39.130 0.00 0.00 0.00 4.40
2209 2497 5.625150 AGGAGAGTAACATTCTTTGCTGTT 58.375 37.500 0.00 0.00 38.95 3.16
2210 2498 6.064717 AGGAGAGTAACATTCTTTGCTGTTT 58.935 36.000 0.00 0.00 36.92 2.83
2211 2499 6.547510 AGGAGAGTAACATTCTTTGCTGTTTT 59.452 34.615 0.00 0.00 36.92 2.43
2212 2500 7.068716 AGGAGAGTAACATTCTTTGCTGTTTTT 59.931 33.333 0.00 0.00 36.92 1.94
2213 2501 7.168135 GGAGAGTAACATTCTTTGCTGTTTTTG 59.832 37.037 0.00 0.00 36.92 2.44
2214 2502 7.547227 AGAGTAACATTCTTTGCTGTTTTTGT 58.453 30.769 0.00 0.00 36.92 2.83
2215 2503 8.034804 AGAGTAACATTCTTTGCTGTTTTTGTT 58.965 29.630 0.00 0.00 36.92 2.83
2216 2504 8.546597 AGTAACATTCTTTGCTGTTTTTGTTT 57.453 26.923 0.00 0.00 36.92 2.83
2217 2505 8.655970 AGTAACATTCTTTGCTGTTTTTGTTTC 58.344 29.630 0.00 0.00 36.92 2.78
2218 2506 7.432350 AACATTCTTTGCTGTTTTTGTTTCA 57.568 28.000 0.00 0.00 31.74 2.69
2219 2507 7.432350 ACATTCTTTGCTGTTTTTGTTTCAA 57.568 28.000 0.00 0.00 0.00 2.69
2220 2508 7.869800 ACATTCTTTGCTGTTTTTGTTTCAAA 58.130 26.923 0.00 0.00 0.00 2.69
2221 2509 8.348507 ACATTCTTTGCTGTTTTTGTTTCAAAA 58.651 25.926 3.93 3.93 0.00 2.44
2222 2510 9.178427 CATTCTTTGCTGTTTTTGTTTCAAAAA 57.822 25.926 13.87 13.87 0.00 1.94
2376 2695 2.856557 GGAACTCCGCTGTCGTATTTAC 59.143 50.000 0.00 0.00 0.00 2.01
2381 2700 2.107178 CCGCTGTCGTATTTACTCGTC 58.893 52.381 0.00 0.00 0.00 4.20
2401 2720 1.153208 ATCCAGTAGCAGCAGCAGC 60.153 57.895 3.17 0.46 45.49 5.25
2421 2747 1.984570 TTCCAGAGTCCAGAGGGCG 60.985 63.158 0.00 0.00 0.00 6.13
2455 2787 4.217159 GCGACGGGGGCGAGTTAT 62.217 66.667 0.00 0.00 0.00 1.89
2470 2802 2.280628 AGTTATTTCTACTGCTGCGCC 58.719 47.619 4.18 0.00 0.00 6.53
2497 2840 0.112606 TCCTCTTCTGACCTGACCGT 59.887 55.000 0.00 0.00 0.00 4.83
2500 2843 0.959553 TCTTCTGACCTGACCGTGTC 59.040 55.000 0.00 0.00 0.00 3.67
2589 2937 1.774727 CGTACGTACGGCAACCAAC 59.225 57.895 34.54 3.96 45.30 3.77
2667 3031 4.065789 GTCAATTATTGGGACGAGGATCC 58.934 47.826 2.48 2.48 38.13 3.36
2673 3037 3.551407 GGACGAGGATCCCCTGCC 61.551 72.222 8.55 1.52 44.53 4.85
2674 3038 3.917760 GACGAGGATCCCCTGCCG 61.918 72.222 8.55 7.30 44.53 5.69
2675 3039 4.779733 ACGAGGATCCCCTGCCGT 62.780 66.667 8.55 7.95 44.53 5.68
2676 3040 4.227134 CGAGGATCCCCTGCCGTG 62.227 72.222 8.55 0.00 44.53 4.94
2677 3041 3.866582 GAGGATCCCCTGCCGTGG 61.867 72.222 8.55 0.00 44.53 4.94
2694 3058 2.873797 GGCCAAGCCTACCTTTGAG 58.126 57.895 0.00 0.00 46.69 3.02
2695 3059 0.038310 GGCCAAGCCTACCTTTGAGT 59.962 55.000 0.00 0.00 46.69 3.41
2696 3060 1.454201 GCCAAGCCTACCTTTGAGTC 58.546 55.000 0.00 0.00 0.00 3.36
2697 3061 1.271379 GCCAAGCCTACCTTTGAGTCA 60.271 52.381 0.00 0.00 0.00 3.41
2698 3062 2.427506 CCAAGCCTACCTTTGAGTCAC 58.572 52.381 0.00 0.00 0.00 3.67
2699 3063 2.039084 CCAAGCCTACCTTTGAGTCACT 59.961 50.000 0.00 0.00 0.00 3.41
2700 3064 3.070018 CAAGCCTACCTTTGAGTCACTG 58.930 50.000 0.00 0.00 0.00 3.66
2701 3065 2.609747 AGCCTACCTTTGAGTCACTGA 58.390 47.619 0.00 0.00 0.00 3.41
2702 3066 2.300437 AGCCTACCTTTGAGTCACTGAC 59.700 50.000 0.38 0.38 0.00 3.51
2703 3067 2.037251 GCCTACCTTTGAGTCACTGACA 59.963 50.000 11.80 0.00 34.60 3.58
2704 3068 3.654414 CCTACCTTTGAGTCACTGACAC 58.346 50.000 11.80 5.84 34.60 3.67
2705 3069 3.069586 CCTACCTTTGAGTCACTGACACA 59.930 47.826 11.80 8.49 34.60 3.72
2706 3070 2.906354 ACCTTTGAGTCACTGACACAC 58.094 47.619 11.80 3.56 33.37 3.82
2707 3071 1.860950 CCTTTGAGTCACTGACACACG 59.139 52.381 11.80 5.33 33.37 4.49
2708 3072 1.860950 CTTTGAGTCACTGACACACGG 59.139 52.381 11.80 3.46 33.37 4.94
2709 3073 0.104120 TTGAGTCACTGACACACGGG 59.896 55.000 11.80 0.00 33.37 5.28
2710 3074 1.040893 TGAGTCACTGACACACGGGT 61.041 55.000 11.80 0.00 34.60 5.28
2711 3075 0.318784 GAGTCACTGACACACGGGTC 60.319 60.000 11.80 0.00 38.29 4.46
2712 3076 1.300697 GTCACTGACACACGGGTCC 60.301 63.158 4.17 0.00 36.97 4.46
2713 3077 2.030562 CACTGACACACGGGTCCC 59.969 66.667 0.00 0.00 36.97 4.46
2714 3078 2.445085 ACTGACACACGGGTCCCA 60.445 61.111 9.12 0.00 36.97 4.37
2715 3079 2.030562 CTGACACACGGGTCCCAC 59.969 66.667 9.12 0.00 36.97 4.61
2716 3080 2.764547 TGACACACGGGTCCCACA 60.765 61.111 9.12 0.00 36.97 4.17
2717 3081 2.318519 CTGACACACGGGTCCCACAA 62.319 60.000 9.12 0.00 36.97 3.33
2718 3082 1.153127 GACACACGGGTCCCACAAA 60.153 57.895 9.12 0.00 0.00 2.83
2719 3083 1.153046 ACACACGGGTCCCACAAAG 60.153 57.895 9.12 0.00 0.00 2.77
2720 3084 1.153046 CACACGGGTCCCACAAAGT 60.153 57.895 9.12 0.00 0.00 2.66
2721 3085 0.107081 CACACGGGTCCCACAAAGTA 59.893 55.000 9.12 0.00 0.00 2.24
2722 3086 1.061546 ACACGGGTCCCACAAAGTAT 58.938 50.000 9.12 0.00 0.00 2.12
2723 3087 1.271163 ACACGGGTCCCACAAAGTATG 60.271 52.381 9.12 0.00 0.00 2.39
2724 3088 0.326927 ACGGGTCCCACAAAGTATGG 59.673 55.000 9.12 0.00 36.94 2.74
2731 3095 2.578683 CACAAAGTATGGGGCCCAC 58.421 57.895 31.54 17.27 35.80 4.61
2732 3096 0.970427 CACAAAGTATGGGGCCCACC 60.970 60.000 31.54 21.84 35.80 4.61
2733 3097 1.146544 ACAAAGTATGGGGCCCACCT 61.147 55.000 31.54 23.92 35.80 4.00
2734 3098 0.684153 CAAAGTATGGGGCCCACCTG 60.684 60.000 31.54 16.53 35.80 4.00
2735 3099 1.146544 AAAGTATGGGGCCCACCTGT 61.147 55.000 31.54 19.29 35.80 4.00
2736 3100 1.571773 AAGTATGGGGCCCACCTGTC 61.572 60.000 31.54 16.09 35.80 3.51
2737 3101 2.126142 TATGGGGCCCACCTGTCA 59.874 61.111 31.54 11.89 35.80 3.58
2738 3102 2.000701 TATGGGGCCCACCTGTCAG 61.001 63.158 31.54 0.00 35.80 3.51
2739 3103 2.781258 TATGGGGCCCACCTGTCAGT 62.781 60.000 31.54 12.42 35.80 3.41
2740 3104 4.351054 GGGGCCCACCTGTCAGTG 62.351 72.222 26.86 0.00 40.03 3.66
2741 3105 3.249189 GGGCCCACCTGTCAGTGA 61.249 66.667 19.95 0.00 40.34 3.41
2742 3106 2.032681 GGCCCACCTGTCAGTGAC 59.967 66.667 16.68 16.68 40.34 3.67
2743 3107 2.520536 GGCCCACCTGTCAGTGACT 61.521 63.158 23.29 1.01 40.34 3.41
2744 3108 1.004440 GCCCACCTGTCAGTGACTC 60.004 63.158 23.29 0.00 40.34 3.36
2745 3109 1.758440 GCCCACCTGTCAGTGACTCA 61.758 60.000 23.29 4.07 40.34 3.41
2746 3110 0.758734 CCCACCTGTCAGTGACTCAA 59.241 55.000 23.29 3.26 40.34 3.02
2747 3111 1.140852 CCCACCTGTCAGTGACTCAAA 59.859 52.381 23.29 2.89 40.34 2.69
2748 3112 2.487934 CCACCTGTCAGTGACTCAAAG 58.512 52.381 23.29 12.34 40.34 2.77
2749 3113 2.487934 CACCTGTCAGTGACTCAAAGG 58.512 52.381 23.29 21.72 40.34 3.11
2750 3114 1.202698 ACCTGTCAGTGACTCAAAGGC 60.203 52.381 23.29 0.00 33.15 4.35
2751 3115 1.202687 CCTGTCAGTGACTCAAAGGCA 60.203 52.381 23.29 0.38 33.15 4.75
2752 3116 2.141517 CTGTCAGTGACTCAAAGGCAG 58.858 52.381 23.29 6.76 30.96 4.85
2753 3117 1.202687 TGTCAGTGACTCAAAGGCAGG 60.203 52.381 23.29 0.00 30.96 4.85
2754 3118 0.397941 TCAGTGACTCAAAGGCAGGG 59.602 55.000 0.00 0.00 30.96 4.45
2755 3119 0.109342 CAGTGACTCAAAGGCAGGGT 59.891 55.000 0.00 0.00 30.96 4.34
2756 3120 1.347707 CAGTGACTCAAAGGCAGGGTA 59.652 52.381 0.00 0.00 30.96 3.69
2757 3121 2.026822 CAGTGACTCAAAGGCAGGGTAT 60.027 50.000 0.00 0.00 30.96 2.73
2758 3122 2.026822 AGTGACTCAAAGGCAGGGTATG 60.027 50.000 0.00 0.00 30.96 2.39
2759 3123 1.281867 TGACTCAAAGGCAGGGTATGG 59.718 52.381 0.00 0.00 0.00 2.74
2766 3130 3.255032 GCAGGGTATGGCAGGGAT 58.745 61.111 0.00 0.00 0.00 3.85
2767 3131 1.538666 GCAGGGTATGGCAGGGATT 59.461 57.895 0.00 0.00 0.00 3.01
2768 3132 0.825010 GCAGGGTATGGCAGGGATTG 60.825 60.000 0.00 0.00 0.00 2.67
2780 3144 2.089980 CAGGGATTGCAAAGTCAGAGG 58.910 52.381 1.71 0.00 0.00 3.69
2783 3147 2.026262 GGGATTGCAAAGTCAGAGGGTA 60.026 50.000 1.71 0.00 0.00 3.69
2784 3148 3.372025 GGGATTGCAAAGTCAGAGGGTAT 60.372 47.826 1.71 0.00 0.00 2.73
2817 3430 4.516135 TCTGCTCGAGCGCGTACG 62.516 66.667 30.75 11.84 45.83 3.67
2818 3431 4.813526 CTGCTCGAGCGCGTACGT 62.814 66.667 30.75 0.00 45.83 3.57
2820 3433 2.717898 GCTCGAGCGCGTACGTAG 60.718 66.667 23.61 12.47 42.83 3.51
2821 3434 3.001067 CTCGAGCGCGTACGTAGA 58.999 61.111 17.90 8.36 42.83 2.59
2822 3435 1.346197 CTCGAGCGCGTACGTAGAA 59.654 57.895 17.90 6.52 42.83 2.10
2824 3437 1.059994 CGAGCGCGTACGTAGAAGT 59.940 57.895 17.90 0.42 42.83 3.01
2825 3438 0.298707 CGAGCGCGTACGTAGAAGTA 59.701 55.000 17.90 0.00 42.83 2.24
2827 3440 1.325943 GAGCGCGTACGTAGAAGTACT 59.674 52.381 17.90 3.74 43.42 2.73
2828 3441 1.061711 AGCGCGTACGTAGAAGTACTG 59.938 52.381 17.90 0.00 43.42 2.74
2829 3442 1.201965 GCGCGTACGTAGAAGTACTGT 60.202 52.381 17.90 0.00 43.42 3.55
2830 3443 2.425283 CGCGTACGTAGAAGTACTGTG 58.575 52.381 17.90 3.20 43.42 3.66
2831 3444 2.172365 GCGTACGTAGAAGTACTGTGC 58.828 52.381 17.90 0.00 43.42 4.57
2832 3445 2.159599 GCGTACGTAGAAGTACTGTGCT 60.160 50.000 17.90 0.00 43.42 4.40
2833 3446 3.669023 GCGTACGTAGAAGTACTGTGCTT 60.669 47.826 17.90 10.99 43.42 3.91
2835 3448 4.377738 CGTACGTAGAAGTACTGTGCTTGA 60.378 45.833 15.90 1.11 43.42 3.02
2837 3450 5.135508 ACGTAGAAGTACTGTGCTTGATT 57.864 39.130 15.90 4.37 0.00 2.57
2840 3453 3.743521 AGAAGTACTGTGCTTGATTGCA 58.256 40.909 15.90 0.00 41.05 4.08
2841 3454 3.750130 AGAAGTACTGTGCTTGATTGCAG 59.250 43.478 15.90 0.00 44.20 4.41
2842 3455 3.407424 AGTACTGTGCTTGATTGCAGA 57.593 42.857 0.00 0.00 44.20 4.26
2844 3457 3.696782 CTGTGCTTGATTGCAGAGC 57.303 52.632 0.96 6.53 45.00 4.09
2845 3458 1.166129 CTGTGCTTGATTGCAGAGCT 58.834 50.000 12.53 0.00 45.00 4.09
2879 3911 3.204526 CCTCACCGGAGTACTAGTACTG 58.795 54.545 34.67 23.74 45.63 2.74
2889 3936 7.361371 CCGGAGTACTAGTACTGATGATGATTC 60.361 44.444 34.67 18.27 45.63 2.52
2890 3937 7.389330 CGGAGTACTAGTACTGATGATGATTCT 59.611 40.741 34.67 10.76 45.63 2.40
2891 3938 8.511321 GGAGTACTAGTACTGATGATGATTCTG 58.489 40.741 34.67 0.00 45.63 3.02
2893 3940 8.001875 AGTACTAGTACTGATGATGATTCTGGT 58.998 37.037 30.33 4.47 44.11 4.00
3088 4222 0.616111 ATCGCCCTCTCAGGTCAGTT 60.616 55.000 0.00 0.00 31.93 3.16
3096 4715 0.389948 CTCAGGTCAGTTGTACGGCC 60.390 60.000 0.00 0.00 0.00 6.13
3111 4730 2.726821 ACGGCCTGATTGATTGATTGT 58.273 42.857 0.00 0.00 0.00 2.71
3113 4732 3.119388 ACGGCCTGATTGATTGATTGTTG 60.119 43.478 0.00 0.00 0.00 3.33
3122 4741 6.544931 TGATTGATTGATTGTTGATCTCCTCC 59.455 38.462 0.00 0.00 35.69 4.30
3123 4742 4.445453 TGATTGATTGTTGATCTCCTCCG 58.555 43.478 0.00 0.00 35.69 4.63
3124 4743 2.988010 TGATTGTTGATCTCCTCCGG 57.012 50.000 0.00 0.00 35.69 5.14
3125 4744 1.134401 TGATTGTTGATCTCCTCCGGC 60.134 52.381 0.00 0.00 35.69 6.13
3126 4745 0.181350 ATTGTTGATCTCCTCCGGCC 59.819 55.000 0.00 0.00 0.00 6.13
3190 4825 8.803397 TTATTAGCCGCTCAAGATAGATAGTA 57.197 34.615 0.00 0.00 0.00 1.82
3191 4826 6.745159 TTAGCCGCTCAAGATAGATAGTAG 57.255 41.667 0.00 0.00 0.00 2.57
3195 5354 4.142491 CCGCTCAAGATAGATAGTAGGCAG 60.142 50.000 0.00 0.00 0.00 4.85
3210 5829 1.000955 AGGCAGTTACTGACGTGGAAG 59.999 52.381 17.40 0.00 45.59 3.46
3212 5831 2.059541 GCAGTTACTGACGTGGAAGAC 58.940 52.381 17.40 0.00 32.44 3.01
3213 5832 3.481014 GCAGTTACTGACGTGGAAGACG 61.481 54.545 17.40 0.00 41.98 4.18
3371 6194 2.509336 CCGCTCAACTACAGCCCG 60.509 66.667 0.00 0.00 32.83 6.13
3372 6195 2.509336 CGCTCAACTACAGCCCGG 60.509 66.667 0.00 0.00 32.83 5.73
3518 6341 2.660552 ACCGTCAACCACTTCGCG 60.661 61.111 0.00 0.00 0.00 5.87
3519 6342 2.660552 CCGTCAACCACTTCGCGT 60.661 61.111 5.77 0.00 0.00 6.01
3639 6462 2.548480 GTCTGCACCAAGGTCAACTAAC 59.452 50.000 0.00 0.00 0.00 2.34
3640 6463 1.531149 CTGCACCAAGGTCAACTAACG 59.469 52.381 0.00 0.00 0.00 3.18
3641 6464 1.134340 TGCACCAAGGTCAACTAACGT 60.134 47.619 0.00 0.00 0.00 3.99
3642 6465 1.263217 GCACCAAGGTCAACTAACGTG 59.737 52.381 0.00 0.00 0.00 4.49
3657 6490 3.396260 AACGTGGTTGCTTAGCTCTAA 57.604 42.857 5.60 0.00 0.00 2.10
3658 6491 2.960819 ACGTGGTTGCTTAGCTCTAAG 58.039 47.619 5.60 11.31 43.98 2.18
3669 6502 1.515954 GCTCTAAGCTGCCGTGGTA 59.484 57.895 0.00 0.00 38.45 3.25
3676 6509 1.810030 GCTGCCGTGGTAGTAGCAC 60.810 63.158 20.22 20.22 42.72 4.40
3705 6538 6.435277 ACGTACATTCAGTAGAGAGGGTAAAA 59.565 38.462 0.00 0.00 32.19 1.52
3706 6539 7.123847 ACGTACATTCAGTAGAGAGGGTAAAAT 59.876 37.037 0.00 0.00 32.19 1.82
3707 6540 7.435488 CGTACATTCAGTAGAGAGGGTAAAATG 59.565 40.741 0.00 0.00 32.19 2.32
3708 6541 6.653989 ACATTCAGTAGAGAGGGTAAAATGG 58.346 40.000 0.00 0.00 0.00 3.16
3709 6542 6.443849 ACATTCAGTAGAGAGGGTAAAATGGA 59.556 38.462 0.00 0.00 0.00 3.41
3724 6557 2.034687 GGATGGATGGATGGGCCG 59.965 66.667 0.00 0.00 40.66 6.13
3728 6561 2.046892 GGATGGATGGGCCGATCG 60.047 66.667 20.10 8.51 40.66 3.69
3756 6593 4.016444 GTCATGTGTCTCTCCTCTTCTCT 58.984 47.826 0.00 0.00 0.00 3.10
3757 6594 4.462483 GTCATGTGTCTCTCCTCTTCTCTT 59.538 45.833 0.00 0.00 0.00 2.85
3758 6595 4.704540 TCATGTGTCTCTCCTCTTCTCTTC 59.295 45.833 0.00 0.00 0.00 2.87
3759 6596 4.380843 TGTGTCTCTCCTCTTCTCTTCT 57.619 45.455 0.00 0.00 0.00 2.85
3760 6597 4.331968 TGTGTCTCTCCTCTTCTCTTCTC 58.668 47.826 0.00 0.00 0.00 2.87
3772 6609 2.515523 CTTCTCCCTGCCCATGCG 60.516 66.667 0.00 0.00 41.78 4.73
3792 6629 1.601759 GCCCCATATGCTCGCACAT 60.602 57.895 0.00 0.00 0.00 3.21
3880 6725 2.417516 CGTGGGATAGGAGGCACG 59.582 66.667 0.00 0.00 0.00 5.34
3881 6726 2.109181 GTGGGATAGGAGGCACGC 59.891 66.667 0.00 0.00 0.00 5.34
3882 6727 2.364973 TGGGATAGGAGGCACGCA 60.365 61.111 0.00 0.00 0.00 5.24
3883 6728 2.109181 GGGATAGGAGGCACGCAC 59.891 66.667 0.00 0.00 0.00 5.34
3916 6761 5.391523 CCATGTAAATGTTACACTTGGTCCG 60.392 44.000 10.61 0.00 34.45 4.79
4110 7059 4.329256 GGTCCAAGTTTCTCATAACTACGC 59.671 45.833 0.00 0.00 37.37 4.42
4141 7090 2.529151 CTGTGAACACCTGCAACAAAC 58.471 47.619 2.46 0.00 0.00 2.93
4169 7118 8.175925 TGTGATATTTTCAGTCAAACATCCAA 57.824 30.769 0.00 0.00 34.17 3.53
4179 7128 3.569701 GTCAAACATCCAAAGCTCCAAGA 59.430 43.478 0.00 0.00 0.00 3.02
4181 7130 4.279169 TCAAACATCCAAAGCTCCAAGAAG 59.721 41.667 0.00 0.00 0.00 2.85
4182 7131 2.165998 ACATCCAAAGCTCCAAGAAGC 58.834 47.619 0.00 0.00 42.82 3.86
4183 7132 2.165167 CATCCAAAGCTCCAAGAAGCA 58.835 47.619 0.00 0.00 45.00 3.91
4184 7133 1.609208 TCCAAAGCTCCAAGAAGCAC 58.391 50.000 0.00 0.00 45.00 4.40
4185 7134 0.239347 CCAAAGCTCCAAGAAGCACG 59.761 55.000 0.00 0.00 45.00 5.34
4196 7145 2.679837 CAAGAAGCACGCCTCAATACAT 59.320 45.455 0.00 0.00 0.00 2.29
4223 7277 5.940470 AGGAACAGGAAATGATAGTGAACAC 59.060 40.000 0.00 0.00 0.00 3.32
4248 7302 5.578727 CAGTATGCTGTCCAAGTAAAGAGAC 59.421 44.000 2.12 0.00 37.92 3.36
4284 7338 2.760374 ACACACAAGAGCAACTCTAGC 58.240 47.619 0.00 0.00 40.28 3.42
4299 7353 4.688511 CTCTAGCAGAGTTAGTCGTGTT 57.311 45.455 5.34 0.00 37.57 3.32
4300 7354 4.407818 CTCTAGCAGAGTTAGTCGTGTTG 58.592 47.826 5.34 0.00 37.57 3.33
4301 7355 2.440539 AGCAGAGTTAGTCGTGTTGG 57.559 50.000 0.00 0.00 0.00 3.77
4322 7376 3.054139 GGCAGCCTCCATATGGATATGAA 60.054 47.826 24.73 1.46 44.46 2.57
4330 7384 7.365921 GCCTCCATATGGATATGAAGATTACCA 60.366 40.741 24.73 0.00 44.46 3.25
4341 7395 4.219115 TGAAGATTACCAAGCCAAACCAA 58.781 39.130 0.00 0.00 0.00 3.67
4375 7429 2.700897 TCCATAAGAGCTGCCTCCTTAC 59.299 50.000 0.00 0.00 38.96 2.34
4381 7435 0.753262 AGCTGCCTCCTTACCGTATG 59.247 55.000 0.00 0.00 0.00 2.39
4389 7443 2.764572 CTCCTTACCGTATGACCCACTT 59.235 50.000 0.00 0.00 0.00 3.16
4391 7445 2.235402 CCTTACCGTATGACCCACTTGT 59.765 50.000 0.00 0.00 0.00 3.16
4416 7470 2.573462 TGAGACATCCTCCTTTTCCCAG 59.427 50.000 0.00 0.00 41.25 4.45
4425 7479 3.350833 CTCCTTTTCCCAGTCTCCAATG 58.649 50.000 0.00 0.00 0.00 2.82
4499 7553 0.744874 GGGATTGGACGATGACGAGA 59.255 55.000 0.00 0.00 42.66 4.04
4500 7554 1.536284 GGGATTGGACGATGACGAGAC 60.536 57.143 0.00 0.00 42.66 3.36
4508 7562 4.194720 ATGACGAGACGCGAGGGC 62.195 66.667 15.93 0.41 44.57 5.19
4519 7573 2.761195 GCGAGGGCGTGGAAAATCC 61.761 63.158 0.00 0.00 40.36 3.01
4533 7587 5.398236 TGGAAAATCCAAGATGGTACCAAA 58.602 37.500 20.76 0.00 45.00 3.28
4534 7588 5.841237 TGGAAAATCCAAGATGGTACCAAAA 59.159 36.000 20.76 0.00 45.00 2.44
4535 7589 6.500049 TGGAAAATCCAAGATGGTACCAAAAT 59.500 34.615 20.76 1.46 45.00 1.82
4536 7590 7.017056 TGGAAAATCCAAGATGGTACCAAAATT 59.983 33.333 20.76 11.09 45.00 1.82
4537 7591 7.549134 GGAAAATCCAAGATGGTACCAAAATTC 59.451 37.037 20.76 12.05 39.03 2.17
4538 7592 5.835113 ATCCAAGATGGTACCAAAATTCG 57.165 39.130 20.76 7.00 39.03 3.34
4539 7593 3.442273 TCCAAGATGGTACCAAAATTCGC 59.558 43.478 20.76 2.74 39.03 4.70
4540 7594 3.192422 CCAAGATGGTACCAAAATTCGCA 59.808 43.478 20.76 0.00 31.35 5.10
4541 7595 4.165779 CAAGATGGTACCAAAATTCGCAC 58.834 43.478 20.76 2.49 0.00 5.34
4542 7596 3.417101 AGATGGTACCAAAATTCGCACA 58.583 40.909 20.76 0.00 0.00 4.57
4543 7597 3.440173 AGATGGTACCAAAATTCGCACAG 59.560 43.478 20.76 0.00 0.00 3.66
4544 7598 2.852449 TGGTACCAAAATTCGCACAGA 58.148 42.857 13.60 0.00 0.00 3.41
4545 7599 2.811431 TGGTACCAAAATTCGCACAGAG 59.189 45.455 13.60 0.00 0.00 3.35
4546 7600 3.071479 GGTACCAAAATTCGCACAGAGA 58.929 45.455 7.15 0.00 0.00 3.10
4547 7601 3.689649 GGTACCAAAATTCGCACAGAGAT 59.310 43.478 7.15 0.00 0.00 2.75
4548 7602 3.837213 ACCAAAATTCGCACAGAGATG 57.163 42.857 0.00 0.00 0.00 2.90
4570 7624 0.774685 GTCGTCGGTGACTCGTTTTC 59.225 55.000 0.00 0.00 35.95 2.29
4571 7625 0.658244 TCGTCGGTGACTCGTTTTCG 60.658 55.000 0.00 0.00 45.64 3.46
4591 7645 0.962356 ACAGCCATTTCAGCTTCGGG 60.962 55.000 0.00 0.00 38.95 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 27 3.317430 AGGCTTTAGTATTCGAGTACCGG 59.683 47.826 13.84 0.00 39.14 5.28
50 56 4.573950 CCCATGCATTTCGGCGCC 62.574 66.667 19.07 19.07 36.28 6.53
147 170 0.957395 CAGCGGCCAACTTGATCACT 60.957 55.000 2.24 0.00 0.00 3.41
185 208 5.648178 TCAGCCTGTGATTAAACTACGTA 57.352 39.130 0.00 0.00 0.00 3.57
187 210 5.109210 TCATCAGCCTGTGATTAAACTACG 58.891 41.667 0.00 0.00 44.05 3.51
188 211 6.985188 TTCATCAGCCTGTGATTAAACTAC 57.015 37.500 0.00 0.00 44.05 2.73
224 249 4.632538 ATTTAAAGGAATGCAGTACGCC 57.367 40.909 0.00 0.00 41.33 5.68
226 251 7.186804 CCACTAATTTAAAGGAATGCAGTACG 58.813 38.462 0.00 0.00 0.00 3.67
235 260 9.250246 CCAGATTAACCCACTAATTTAAAGGAA 57.750 33.333 0.00 0.00 0.00 3.36
236 261 8.616598 TCCAGATTAACCCACTAATTTAAAGGA 58.383 33.333 0.00 0.00 0.00 3.36
238 263 9.462606 AGTCCAGATTAACCCACTAATTTAAAG 57.537 33.333 0.00 0.00 0.00 1.85
239 264 9.238368 CAGTCCAGATTAACCCACTAATTTAAA 57.762 33.333 0.00 0.00 0.00 1.52
240 265 8.387813 ACAGTCCAGATTAACCCACTAATTTAA 58.612 33.333 0.00 0.00 0.00 1.52
243 268 6.180472 CACAGTCCAGATTAACCCACTAATT 58.820 40.000 0.00 0.00 0.00 1.40
244 269 5.339200 CCACAGTCCAGATTAACCCACTAAT 60.339 44.000 0.00 0.00 0.00 1.73
245 270 4.019681 CCACAGTCCAGATTAACCCACTAA 60.020 45.833 0.00 0.00 0.00 2.24
246 271 3.517901 CCACAGTCCAGATTAACCCACTA 59.482 47.826 0.00 0.00 0.00 2.74
248 273 2.039879 ACCACAGTCCAGATTAACCCAC 59.960 50.000 0.00 0.00 0.00 4.61
250 275 3.081804 CAACCACAGTCCAGATTAACCC 58.918 50.000 0.00 0.00 0.00 4.11
251 276 2.488153 GCAACCACAGTCCAGATTAACC 59.512 50.000 0.00 0.00 0.00 2.85
290 315 0.537188 TCCTCGCCCTCATCAGAAAC 59.463 55.000 0.00 0.00 0.00 2.78
300 325 0.989212 TCTCTACTCCTCCTCGCCCT 60.989 60.000 0.00 0.00 0.00 5.19
301 326 0.536460 CTCTCTACTCCTCCTCGCCC 60.536 65.000 0.00 0.00 0.00 6.13
305 330 3.650942 TGATCCTCTCTCTACTCCTCCTC 59.349 52.174 0.00 0.00 0.00 3.71
306 331 3.394606 GTGATCCTCTCTCTACTCCTCCT 59.605 52.174 0.00 0.00 0.00 3.69
307 332 3.137544 TGTGATCCTCTCTCTACTCCTCC 59.862 52.174 0.00 0.00 0.00 4.30
311 336 2.884639 GGCTGTGATCCTCTCTCTACTC 59.115 54.545 0.00 0.00 0.00 2.59
315 340 0.033601 ACGGCTGTGATCCTCTCTCT 60.034 55.000 0.00 0.00 0.00 3.10
317 342 0.534412 CAACGGCTGTGATCCTCTCT 59.466 55.000 0.00 0.00 0.00 3.10
318 343 0.460987 CCAACGGCTGTGATCCTCTC 60.461 60.000 0.00 0.00 0.00 3.20
392 424 8.958506 GGACTTGAGACTTATAAGTTGAGACTA 58.041 37.037 18.96 6.16 39.88 2.59
393 425 7.093684 GGGACTTGAGACTTATAAGTTGAGACT 60.094 40.741 18.96 10.98 39.88 3.24
394 426 7.036829 GGGACTTGAGACTTATAAGTTGAGAC 58.963 42.308 18.96 13.24 39.88 3.36
395 427 6.954684 AGGGACTTGAGACTTATAAGTTGAGA 59.045 38.462 18.96 6.15 34.84 3.27
396 428 7.176589 AGGGACTTGAGACTTATAAGTTGAG 57.823 40.000 18.96 15.20 34.84 3.02
397 429 7.123847 GGTAGGGACTTGAGACTTATAAGTTGA 59.876 40.741 18.96 4.13 38.78 3.18
398 430 7.124448 AGGTAGGGACTTGAGACTTATAAGTTG 59.876 40.741 18.96 9.81 38.78 3.16
399 431 7.124448 CAGGTAGGGACTTGAGACTTATAAGTT 59.876 40.741 18.96 9.34 38.78 2.66
400 432 6.608002 CAGGTAGGGACTTGAGACTTATAAGT 59.392 42.308 18.05 18.05 40.66 2.24
401 433 6.608002 ACAGGTAGGGACTTGAGACTTATAAG 59.392 42.308 11.05 11.05 41.75 1.73
402 434 6.500336 ACAGGTAGGGACTTGAGACTTATAA 58.500 40.000 0.00 0.00 41.75 0.98
403 435 6.088541 ACAGGTAGGGACTTGAGACTTATA 57.911 41.667 0.00 0.00 41.75 0.98
404 436 4.949121 ACAGGTAGGGACTTGAGACTTAT 58.051 43.478 0.00 0.00 41.75 1.73
405 437 4.399483 ACAGGTAGGGACTTGAGACTTA 57.601 45.455 0.00 0.00 41.75 2.24
406 438 3.261818 ACAGGTAGGGACTTGAGACTT 57.738 47.619 0.00 0.00 41.75 3.01
407 439 3.261818 AACAGGTAGGGACTTGAGACT 57.738 47.619 0.00 0.00 41.75 3.24
408 440 3.557264 CCAAACAGGTAGGGACTTGAGAC 60.557 52.174 0.00 0.00 41.75 3.36
409 441 2.637872 CCAAACAGGTAGGGACTTGAGA 59.362 50.000 0.00 0.00 41.75 3.27
410 442 3.059352 CCAAACAGGTAGGGACTTGAG 57.941 52.381 0.00 0.00 41.75 3.02
422 454 2.364972 AGTCCCAAGAACCAAACAGG 57.635 50.000 0.00 0.00 45.67 4.00
423 455 6.715264 ACTTATAAGTCCCAAGAACCAAACAG 59.285 38.462 12.50 0.00 32.86 3.16
424 456 6.607019 ACTTATAAGTCCCAAGAACCAAACA 58.393 36.000 12.50 0.00 32.86 2.83
455 487 9.036980 AGAGACTTACAGTTGTAATATGGTCTT 57.963 33.333 18.02 10.43 39.87 3.01
456 488 8.596781 AGAGACTTACAGTTGTAATATGGTCT 57.403 34.615 17.44 17.44 41.17 3.85
464 496 8.964772 GGGACTTATAGAGACTTACAGTTGTAA 58.035 37.037 4.78 4.78 38.10 2.41
465 497 8.334734 AGGGACTTATAGAGACTTACAGTTGTA 58.665 37.037 0.00 0.00 27.25 2.41
466 498 7.183460 AGGGACTTATAGAGACTTACAGTTGT 58.817 38.462 0.00 0.00 27.25 3.32
467 499 7.648039 AGGGACTTATAGAGACTTACAGTTG 57.352 40.000 0.00 0.00 27.25 3.16
511 543 9.274206 GAGACTTAAAGTTGGTATTTGAGACTT 57.726 33.333 0.00 0.00 31.88 3.01
512 544 8.652290 AGAGACTTAAAGTTGGTATTTGAGACT 58.348 33.333 0.00 0.00 33.44 3.24
513 545 8.834749 AGAGACTTAAAGTTGGTATTTGAGAC 57.165 34.615 0.00 0.00 30.26 3.36
532 564 9.628500 ACCAAACAAAAAGAACTTATAGAGACT 57.372 29.630 0.00 0.00 0.00 3.24
540 572 9.810545 CCATCTAAACCAAACAAAAAGAACTTA 57.189 29.630 0.00 0.00 0.00 2.24
541 573 8.536175 TCCATCTAAACCAAACAAAAAGAACTT 58.464 29.630 0.00 0.00 0.00 2.66
542 574 8.073467 TCCATCTAAACCAAACAAAAAGAACT 57.927 30.769 0.00 0.00 0.00 3.01
543 575 8.710835 TTCCATCTAAACCAAACAAAAAGAAC 57.289 30.769 0.00 0.00 0.00 3.01
544 576 9.898152 AATTCCATCTAAACCAAACAAAAAGAA 57.102 25.926 0.00 0.00 0.00 2.52
545 577 9.898152 AAATTCCATCTAAACCAAACAAAAAGA 57.102 25.926 0.00 0.00 0.00 2.52
584 616 9.603921 CACGGATTTATTAGTTTAGGGACTTAA 57.396 33.333 0.00 0.00 41.75 1.85
585 617 8.980596 TCACGGATTTATTAGTTTAGGGACTTA 58.019 33.333 0.00 0.00 41.75 2.24
586 618 7.854337 TCACGGATTTATTAGTTTAGGGACTT 58.146 34.615 0.00 0.00 41.75 3.01
587 619 7.427989 TCACGGATTTATTAGTTTAGGGACT 57.572 36.000 0.00 0.00 46.37 3.85
588 620 8.496707 TTTCACGGATTTATTAGTTTAGGGAC 57.503 34.615 0.00 0.00 0.00 4.46
589 621 8.949177 GTTTTCACGGATTTATTAGTTTAGGGA 58.051 33.333 0.00 0.00 0.00 4.20
590 622 8.732531 TGTTTTCACGGATTTATTAGTTTAGGG 58.267 33.333 0.00 0.00 0.00 3.53
594 626 9.804758 TGTTTGTTTTCACGGATTTATTAGTTT 57.195 25.926 0.00 0.00 0.00 2.66
595 627 9.240159 GTGTTTGTTTTCACGGATTTATTAGTT 57.760 29.630 0.00 0.00 0.00 2.24
596 628 7.863877 GGTGTTTGTTTTCACGGATTTATTAGT 59.136 33.333 0.00 0.00 35.67 2.24
597 629 7.327518 GGGTGTTTGTTTTCACGGATTTATTAG 59.672 37.037 0.00 0.00 35.67 1.73
598 630 7.014422 AGGGTGTTTGTTTTCACGGATTTATTA 59.986 33.333 0.00 0.00 35.67 0.98
599 631 5.986741 GGGTGTTTGTTTTCACGGATTTATT 59.013 36.000 0.00 0.00 35.67 1.40
600 632 5.303333 AGGGTGTTTGTTTTCACGGATTTAT 59.697 36.000 0.00 0.00 35.67 1.40
601 633 4.645588 AGGGTGTTTGTTTTCACGGATTTA 59.354 37.500 0.00 0.00 35.67 1.40
602 634 3.449377 AGGGTGTTTGTTTTCACGGATTT 59.551 39.130 0.00 0.00 35.67 2.17
603 635 3.028130 AGGGTGTTTGTTTTCACGGATT 58.972 40.909 0.00 0.00 35.67 3.01
604 636 2.621526 GAGGGTGTTTGTTTTCACGGAT 59.378 45.455 0.00 0.00 35.67 4.18
605 637 2.018515 GAGGGTGTTTGTTTTCACGGA 58.981 47.619 0.00 0.00 35.67 4.69
606 638 2.021457 AGAGGGTGTTTGTTTTCACGG 58.979 47.619 0.00 0.00 35.67 4.94
607 639 3.775661 AAGAGGGTGTTTGTTTTCACG 57.224 42.857 0.00 0.00 35.67 4.35
608 640 6.033966 CACTAAAGAGGGTGTTTGTTTTCAC 58.966 40.000 0.00 0.00 0.00 3.18
609 641 5.393678 GCACTAAAGAGGGTGTTTGTTTTCA 60.394 40.000 0.00 0.00 36.03 2.69
610 642 5.041287 GCACTAAAGAGGGTGTTTGTTTTC 58.959 41.667 0.00 0.00 36.03 2.29
611 643 4.439563 CGCACTAAAGAGGGTGTTTGTTTT 60.440 41.667 0.00 0.00 36.03 2.43
612 644 3.066203 CGCACTAAAGAGGGTGTTTGTTT 59.934 43.478 0.00 0.00 36.03 2.83
613 645 2.616842 CGCACTAAAGAGGGTGTTTGTT 59.383 45.455 0.00 0.00 36.03 2.83
614 646 2.218603 CGCACTAAAGAGGGTGTTTGT 58.781 47.619 0.00 0.00 36.03 2.83
615 647 2.969443 CGCACTAAAGAGGGTGTTTG 57.031 50.000 0.00 0.00 36.03 2.93
619 651 1.626654 CGCACGCACTAAAGAGGGTG 61.627 60.000 16.55 16.55 46.52 4.61
620 652 1.374252 CGCACGCACTAAAGAGGGT 60.374 57.895 0.00 0.00 32.62 4.34
621 653 2.100631 CCGCACGCACTAAAGAGGG 61.101 63.158 0.00 0.00 0.00 4.30
622 654 1.078759 CTCCGCACGCACTAAAGAGG 61.079 60.000 0.00 0.00 0.00 3.69
623 655 1.687494 GCTCCGCACGCACTAAAGAG 61.687 60.000 0.00 0.00 0.00 2.85
624 656 1.736645 GCTCCGCACGCACTAAAGA 60.737 57.895 0.00 0.00 0.00 2.52
625 657 2.740714 GGCTCCGCACGCACTAAAG 61.741 63.158 0.00 0.00 0.00 1.85
626 658 2.740826 GGCTCCGCACGCACTAAA 60.741 61.111 0.00 0.00 0.00 1.85
674 706 4.526650 GGGAAGGAGGAGTGAGAGAATATC 59.473 50.000 0.00 0.00 0.00 1.63
679 711 1.286553 GAGGGAAGGAGGAGTGAGAGA 59.713 57.143 0.00 0.00 0.00 3.10
680 712 1.775385 GAGGGAAGGAGGAGTGAGAG 58.225 60.000 0.00 0.00 0.00 3.20
688 720 0.978146 ATGTGGACGAGGGAAGGAGG 60.978 60.000 0.00 0.00 0.00 4.30
800 838 6.322456 CGCTTATATAGATGGGGAAGATGAGA 59.678 42.308 0.00 0.00 0.00 3.27
878 924 0.034059 CACACACACACTCTCCCTCC 59.966 60.000 0.00 0.00 0.00 4.30
882 928 0.034059 CCCTCACACACACACTCTCC 59.966 60.000 0.00 0.00 0.00 3.71
888 934 2.203195 GCTGCCCTCACACACACA 60.203 61.111 0.00 0.00 0.00 3.72
890 936 4.624364 CCGCTGCCCTCACACACA 62.624 66.667 0.00 0.00 0.00 3.72
930 982 0.612744 GCTCTTCTTCCTCTGCCTGT 59.387 55.000 0.00 0.00 0.00 4.00
940 1012 6.518208 TGGACTCTTAACTAGCTCTTCTTC 57.482 41.667 0.00 0.00 0.00 2.87
1036 1112 1.226547 CGACGAGGAGCAAGCTCTC 60.227 63.158 20.26 14.32 42.38 3.20
1042 1121 2.559840 GACGACGACGAGGAGCAA 59.440 61.111 15.32 0.00 42.66 3.91
1280 1359 0.901124 ACACTAGAGGCAAGCTCTGG 59.099 55.000 0.00 0.00 35.85 3.86
1283 1362 1.821753 TCAGACACTAGAGGCAAGCTC 59.178 52.381 0.00 0.00 0.00 4.09
1300 1379 1.150827 TCGATGCAAGCAACAGTCAG 58.849 50.000 0.00 0.00 0.00 3.51
1337 1416 2.361610 CCTGCACACCCCCATCAC 60.362 66.667 0.00 0.00 0.00 3.06
1565 1662 2.728817 GGGACTAGCTATGCGCGT 59.271 61.111 8.43 7.55 45.59 6.01
1633 1769 3.269347 CTAATTGACCCCGCGCGG 61.269 66.667 41.00 41.00 0.00 6.46
1661 1797 0.724785 GTTTAGGCGCACGCTTTGTC 60.725 55.000 15.36 0.00 41.60 3.18
1694 1830 2.094762 ATAAACACACACGGAGAGCC 57.905 50.000 0.00 0.00 0.00 4.70
1707 1843 2.553086 CGCGGTTAGCCCTAATAAACA 58.447 47.619 0.00 0.00 44.76 2.83
1708 1844 1.262417 GCGCGGTTAGCCCTAATAAAC 59.738 52.381 8.83 0.00 44.76 2.01
1709 1845 1.134461 TGCGCGGTTAGCCCTAATAAA 60.134 47.619 8.83 0.00 44.76 1.40
1717 1853 3.941836 GATGCTGCGCGGTTAGCC 61.942 66.667 19.23 0.35 44.76 3.93
1729 1927 1.217511 CTCTCGGTGTGCAGATGCT 59.782 57.895 6.35 0.00 42.66 3.79
1757 1955 0.698542 TCAGCCCCATCCATCCATCA 60.699 55.000 0.00 0.00 0.00 3.07
1759 1957 0.995132 TGTCAGCCCCATCCATCCAT 60.995 55.000 0.00 0.00 0.00 3.41
1760 1958 0.995132 ATGTCAGCCCCATCCATCCA 60.995 55.000 0.00 0.00 0.00 3.41
1761 1959 0.538977 CATGTCAGCCCCATCCATCC 60.539 60.000 0.00 0.00 0.00 3.51
1843 2122 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1845 2124 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1846 2125 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1847 2126 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1848 2127 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1849 2128 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1850 2129 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1851 2130 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1852 2131 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1853 2132 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1854 2133 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1906 2189 1.448013 GCACAGGGAGAGGCGTAAC 60.448 63.158 0.00 0.00 0.00 2.50
2047 2334 3.905678 TTGTTTGTTGGGCGGCGG 61.906 61.111 9.78 0.00 0.00 6.13
2054 2341 8.025445 AGTATACGAGTAGTAGTTGTTTGTTGG 58.975 37.037 3.13 0.00 38.94 3.77
2056 2343 9.403110 CAAGTATACGAGTAGTAGTTGTTTGTT 57.597 33.333 3.13 0.00 38.94 2.83
2057 2344 8.571336 ACAAGTATACGAGTAGTAGTTGTTTGT 58.429 33.333 3.13 5.51 38.94 2.83
2061 2349 8.877779 CAGTACAAGTATACGAGTAGTAGTTGT 58.122 37.037 13.99 18.41 39.24 3.32
2062 2350 8.333908 CCAGTACAAGTATACGAGTAGTAGTTG 58.666 40.741 13.99 6.15 38.94 3.16
2066 2354 8.424133 TGATCCAGTACAAGTATACGAGTAGTA 58.576 37.037 13.99 5.35 40.03 1.82
2091 2379 5.275067 AGTCCTCCTAGTAGTAGTACGTG 57.725 47.826 0.00 0.03 33.97 4.49
2103 2391 7.502895 TGCTTAATCTAGTTGTAGTCCTCCTAG 59.497 40.741 0.00 0.00 0.00 3.02
2104 2392 7.351952 TGCTTAATCTAGTTGTAGTCCTCCTA 58.648 38.462 0.00 0.00 0.00 2.94
2144 2432 0.597637 GTGGGATCGATGTGGTAGCG 60.598 60.000 0.54 0.00 40.11 4.26
2172 2460 2.211806 CTCTCCTCGGTTACTCCTACG 58.788 57.143 0.00 0.00 0.00 3.51
2173 2461 3.280197 ACTCTCCTCGGTTACTCCTAC 57.720 52.381 0.00 0.00 0.00 3.18
2175 2463 3.009916 TGTTACTCTCCTCGGTTACTCCT 59.990 47.826 0.00 0.00 0.00 3.69
2176 2464 3.350833 TGTTACTCTCCTCGGTTACTCC 58.649 50.000 0.00 0.00 0.00 3.85
2177 2465 5.357596 AGAATGTTACTCTCCTCGGTTACTC 59.642 44.000 0.00 0.00 0.00 2.59
2178 2466 5.262804 AGAATGTTACTCTCCTCGGTTACT 58.737 41.667 0.00 0.00 0.00 2.24
2179 2467 5.579564 AGAATGTTACTCTCCTCGGTTAC 57.420 43.478 0.00 0.00 0.00 2.50
2222 2510 5.752955 CGATGAAACACCAAGGAATGTTTTT 59.247 36.000 8.63 2.18 46.40 1.94
2223 2511 5.288804 CGATGAAACACCAAGGAATGTTTT 58.711 37.500 8.63 0.00 46.40 2.43
2225 2513 3.305335 GCGATGAAACACCAAGGAATGTT 60.305 43.478 0.00 0.00 40.76 2.71
2226 2514 2.228822 GCGATGAAACACCAAGGAATGT 59.771 45.455 0.00 0.00 0.00 2.71
2230 2518 1.234821 GTGCGATGAAACACCAAGGA 58.765 50.000 0.00 0.00 0.00 3.36
2231 2519 0.950836 TGTGCGATGAAACACCAAGG 59.049 50.000 0.00 0.00 35.90 3.61
2233 2521 1.674359 ACTGTGCGATGAAACACCAA 58.326 45.000 0.00 0.00 35.90 3.67
2234 2522 1.674359 AACTGTGCGATGAAACACCA 58.326 45.000 0.00 0.00 35.90 4.17
2376 2695 0.249238 GCTGCTACTGGATGGACGAG 60.249 60.000 0.00 0.00 0.00 4.18
2381 2700 0.814410 CTGCTGCTGCTACTGGATGG 60.814 60.000 17.00 0.00 40.48 3.51
2401 2720 1.893786 CCCTCTGGACTCTGGAACG 59.106 63.158 0.00 0.00 0.00 3.95
2406 2725 4.504916 CGCGCCCTCTGGACTCTG 62.505 72.222 0.00 0.00 0.00 3.35
2470 2802 2.046864 TCAGAAGAGGAGGCGGACG 61.047 63.158 0.00 0.00 0.00 4.79
2552 2897 2.401990 GGTTCATTTACGCGGCCG 59.598 61.111 24.05 24.05 41.14 6.13
2656 3020 3.551407 GGCAGGGGATCCTCGTCC 61.551 72.222 12.58 10.58 42.67 4.79
2677 3041 1.271379 TGACTCAAAGGTAGGCTTGGC 60.271 52.381 0.00 0.00 0.00 4.52
2678 3042 2.039084 AGTGACTCAAAGGTAGGCTTGG 59.961 50.000 0.00 0.00 0.00 3.61
2679 3043 3.070018 CAGTGACTCAAAGGTAGGCTTG 58.930 50.000 0.00 0.00 0.00 4.01
2680 3044 2.972713 TCAGTGACTCAAAGGTAGGCTT 59.027 45.455 0.00 0.00 0.00 4.35
2681 3045 2.300437 GTCAGTGACTCAAAGGTAGGCT 59.700 50.000 16.26 0.00 0.00 4.58
2682 3046 2.037251 TGTCAGTGACTCAAAGGTAGGC 59.963 50.000 23.29 0.00 33.15 3.93
2683 3047 3.069586 TGTGTCAGTGACTCAAAGGTAGG 59.930 47.826 22.30 0.00 33.95 3.18
2684 3048 4.051922 GTGTGTCAGTGACTCAAAGGTAG 58.948 47.826 25.22 0.00 37.70 3.18
2685 3049 3.490249 CGTGTGTCAGTGACTCAAAGGTA 60.490 47.826 25.22 3.57 37.70 3.08
2686 3050 2.738643 CGTGTGTCAGTGACTCAAAGGT 60.739 50.000 25.22 0.00 37.70 3.50
2687 3051 1.860950 CGTGTGTCAGTGACTCAAAGG 59.139 52.381 25.22 15.50 37.70 3.11
2688 3052 1.860950 CCGTGTGTCAGTGACTCAAAG 59.139 52.381 25.22 21.07 37.70 2.77
2689 3053 1.472552 CCCGTGTGTCAGTGACTCAAA 60.473 52.381 25.22 3.36 37.70 2.69
2690 3054 0.104120 CCCGTGTGTCAGTGACTCAA 59.896 55.000 25.22 8.92 37.70 3.02
2691 3055 1.040893 ACCCGTGTGTCAGTGACTCA 61.041 55.000 23.29 22.13 34.38 3.41
2692 3056 0.318784 GACCCGTGTGTCAGTGACTC 60.319 60.000 23.29 19.84 35.29 3.36
2693 3057 1.740285 GACCCGTGTGTCAGTGACT 59.260 57.895 23.29 1.59 35.29 3.41
2694 3058 1.300697 GGACCCGTGTGTCAGTGAC 60.301 63.158 16.68 16.68 36.97 3.67
2695 3059 2.504274 GGGACCCGTGTGTCAGTGA 61.504 63.158 0.00 0.00 36.97 3.41
2696 3060 2.030562 GGGACCCGTGTGTCAGTG 59.969 66.667 0.00 0.00 36.97 3.66
2697 3061 2.445085 TGGGACCCGTGTGTCAGT 60.445 61.111 5.91 0.00 36.97 3.41
2698 3062 2.030562 GTGGGACCCGTGTGTCAG 59.969 66.667 5.91 0.00 36.97 3.51
2699 3063 1.911702 TTTGTGGGACCCGTGTGTCA 61.912 55.000 5.91 0.00 36.97 3.58
2700 3064 1.153127 TTTGTGGGACCCGTGTGTC 60.153 57.895 5.91 0.00 34.42 3.67
2701 3065 1.153046 CTTTGTGGGACCCGTGTGT 60.153 57.895 5.91 0.00 0.00 3.72
2702 3066 0.107081 TACTTTGTGGGACCCGTGTG 59.893 55.000 5.91 0.00 0.00 3.82
2703 3067 1.061546 ATACTTTGTGGGACCCGTGT 58.938 50.000 5.91 2.69 0.00 4.49
2704 3068 1.448985 CATACTTTGTGGGACCCGTG 58.551 55.000 5.91 0.00 0.00 4.94
2705 3069 0.326927 CCATACTTTGTGGGACCCGT 59.673 55.000 5.91 0.00 32.98 5.28
2706 3070 3.168773 CCATACTTTGTGGGACCCG 57.831 57.895 5.91 0.00 32.98 5.28
2712 3076 0.970427 GTGGGCCCCATACTTTGTGG 60.970 60.000 22.27 0.00 35.28 4.17
2713 3077 0.970427 GGTGGGCCCCATACTTTGTG 60.970 60.000 22.27 0.00 35.28 3.33
2714 3078 1.146544 AGGTGGGCCCCATACTTTGT 61.147 55.000 22.27 0.00 35.28 2.83
2715 3079 0.684153 CAGGTGGGCCCCATACTTTG 60.684 60.000 22.27 10.01 35.28 2.77
2716 3080 1.146544 ACAGGTGGGCCCCATACTTT 61.147 55.000 22.27 1.84 35.28 2.66
2717 3081 1.543896 ACAGGTGGGCCCCATACTT 60.544 57.895 22.27 4.01 35.28 2.24
2718 3082 2.001269 GACAGGTGGGCCCCATACT 61.001 63.158 22.27 9.23 35.28 2.12
2719 3083 2.270874 CTGACAGGTGGGCCCCATAC 62.271 65.000 22.27 11.31 35.28 2.39
2720 3084 2.000701 CTGACAGGTGGGCCCCATA 61.001 63.158 22.27 0.00 35.28 2.74
2721 3085 3.341629 CTGACAGGTGGGCCCCAT 61.342 66.667 22.27 5.27 35.28 4.00
2722 3086 4.918360 ACTGACAGGTGGGCCCCA 62.918 66.667 22.27 7.77 34.57 4.96
2723 3087 4.351054 CACTGACAGGTGGGCCCC 62.351 72.222 22.27 10.91 33.95 5.80
2724 3088 3.249189 TCACTGACAGGTGGGCCC 61.249 66.667 17.59 17.59 37.75 5.80
2725 3089 2.032681 GTCACTGACAGGTGGGCC 59.967 66.667 7.51 0.00 37.75 5.80
2726 3090 1.004440 GAGTCACTGACAGGTGGGC 60.004 63.158 11.80 0.00 37.75 5.36
2727 3091 0.758734 TTGAGTCACTGACAGGTGGG 59.241 55.000 11.80 0.00 37.75 4.61
2728 3092 2.487934 CTTTGAGTCACTGACAGGTGG 58.512 52.381 11.80 0.00 37.75 4.61
2729 3093 2.487934 CCTTTGAGTCACTGACAGGTG 58.512 52.381 11.80 3.26 38.44 4.00
2730 3094 1.202698 GCCTTTGAGTCACTGACAGGT 60.203 52.381 11.80 0.00 34.60 4.00
2731 3095 1.202687 TGCCTTTGAGTCACTGACAGG 60.203 52.381 11.80 9.87 34.60 4.00
2732 3096 2.141517 CTGCCTTTGAGTCACTGACAG 58.858 52.381 11.80 0.00 34.60 3.51
2733 3097 1.202687 CCTGCCTTTGAGTCACTGACA 60.203 52.381 11.80 0.00 34.60 3.58
2734 3098 1.517242 CCTGCCTTTGAGTCACTGAC 58.483 55.000 0.38 0.38 0.00 3.51
2735 3099 0.397941 CCCTGCCTTTGAGTCACTGA 59.602 55.000 0.00 0.00 0.00 3.41
2736 3100 0.109342 ACCCTGCCTTTGAGTCACTG 59.891 55.000 0.00 0.00 0.00 3.66
2737 3101 1.729586 TACCCTGCCTTTGAGTCACT 58.270 50.000 0.00 0.00 0.00 3.41
2738 3102 2.359900 CATACCCTGCCTTTGAGTCAC 58.640 52.381 0.00 0.00 0.00 3.67
2739 3103 1.281867 CCATACCCTGCCTTTGAGTCA 59.718 52.381 0.00 0.00 0.00 3.41
2740 3104 2.019156 GCCATACCCTGCCTTTGAGTC 61.019 57.143 0.00 0.00 0.00 3.36
2741 3105 0.034089 GCCATACCCTGCCTTTGAGT 60.034 55.000 0.00 0.00 0.00 3.41
2742 3106 0.034186 TGCCATACCCTGCCTTTGAG 60.034 55.000 0.00 0.00 0.00 3.02
2743 3107 0.034186 CTGCCATACCCTGCCTTTGA 60.034 55.000 0.00 0.00 0.00 2.69
2744 3108 1.039233 CCTGCCATACCCTGCCTTTG 61.039 60.000 0.00 0.00 0.00 2.77
2745 3109 1.307647 CCTGCCATACCCTGCCTTT 59.692 57.895 0.00 0.00 0.00 3.11
2746 3110 2.693871 CCCTGCCATACCCTGCCTT 61.694 63.158 0.00 0.00 0.00 4.35
2747 3111 2.940421 ATCCCTGCCATACCCTGCCT 62.940 60.000 0.00 0.00 0.00 4.75
2748 3112 2.011617 AATCCCTGCCATACCCTGCC 62.012 60.000 0.00 0.00 0.00 4.85
2749 3113 0.825010 CAATCCCTGCCATACCCTGC 60.825 60.000 0.00 0.00 0.00 4.85
2750 3114 0.825010 GCAATCCCTGCCATACCCTG 60.825 60.000 0.00 0.00 46.13 4.45
2751 3115 1.538666 GCAATCCCTGCCATACCCT 59.461 57.895 0.00 0.00 46.13 4.34
2752 3116 4.181051 GCAATCCCTGCCATACCC 57.819 61.111 0.00 0.00 46.13 3.69
2760 3124 2.089980 CCTCTGACTTTGCAATCCCTG 58.910 52.381 0.00 0.00 0.00 4.45
2761 3125 1.005215 CCCTCTGACTTTGCAATCCCT 59.995 52.381 0.00 0.00 0.00 4.20
2762 3126 1.272147 ACCCTCTGACTTTGCAATCCC 60.272 52.381 0.00 0.00 0.00 3.85
2763 3127 2.206576 ACCCTCTGACTTTGCAATCC 57.793 50.000 0.00 0.00 0.00 3.01
2764 3128 3.629398 CCATACCCTCTGACTTTGCAATC 59.371 47.826 0.00 0.00 0.00 2.67
2765 3129 3.624777 CCATACCCTCTGACTTTGCAAT 58.375 45.455 0.00 0.00 0.00 3.56
2766 3130 2.879756 GCCATACCCTCTGACTTTGCAA 60.880 50.000 0.00 0.00 0.00 4.08
2767 3131 1.340017 GCCATACCCTCTGACTTTGCA 60.340 52.381 0.00 0.00 0.00 4.08
2768 3132 1.383523 GCCATACCCTCTGACTTTGC 58.616 55.000 0.00 0.00 0.00 3.68
2769 3133 1.743772 CGGCCATACCCTCTGACTTTG 60.744 57.143 2.24 0.00 33.26 2.77
2770 3134 0.541863 CGGCCATACCCTCTGACTTT 59.458 55.000 2.24 0.00 33.26 2.66
2771 3135 0.617820 ACGGCCATACCCTCTGACTT 60.618 55.000 2.24 0.00 33.26 3.01
2772 3136 1.001760 ACGGCCATACCCTCTGACT 59.998 57.895 2.24 0.00 33.26 3.41
2773 3137 1.144057 CACGGCCATACCCTCTGAC 59.856 63.158 2.24 0.00 33.26 3.51
2774 3138 2.731571 GCACGGCCATACCCTCTGA 61.732 63.158 2.24 0.00 33.26 3.27
2775 3139 2.203070 GCACGGCCATACCCTCTG 60.203 66.667 2.24 0.00 33.26 3.35
2815 3428 4.785511 ATCAAGCACAGTACTTCTACGT 57.214 40.909 0.00 0.00 0.00 3.57
2817 3430 4.690748 TGCAATCAAGCACAGTACTTCTAC 59.309 41.667 0.00 0.00 40.11 2.59
2818 3431 4.893608 TGCAATCAAGCACAGTACTTCTA 58.106 39.130 0.00 0.00 40.11 2.10
2820 3433 3.748048 TCTGCAATCAAGCACAGTACTTC 59.252 43.478 0.00 0.00 40.11 3.01
2821 3434 3.743521 TCTGCAATCAAGCACAGTACTT 58.256 40.909 0.00 0.00 40.11 2.24
2822 3435 3.332919 CTCTGCAATCAAGCACAGTACT 58.667 45.455 0.00 0.00 40.11 2.73
2824 3437 2.079158 GCTCTGCAATCAAGCACAGTA 58.921 47.619 5.46 0.00 40.11 2.74
2825 3438 0.879765 GCTCTGCAATCAAGCACAGT 59.120 50.000 5.46 0.00 40.11 3.55
2827 3440 0.879090 CAGCTCTGCAATCAAGCACA 59.121 50.000 11.26 0.00 40.11 4.57
2828 3441 0.879765 ACAGCTCTGCAATCAAGCAC 59.120 50.000 11.26 0.00 40.11 4.40
2829 3442 0.879090 CACAGCTCTGCAATCAAGCA 59.121 50.000 11.26 0.00 43.35 3.91
2830 3443 0.456312 GCACAGCTCTGCAATCAAGC 60.456 55.000 9.30 0.00 37.11 4.01
2831 3444 1.135660 CAGCACAGCTCTGCAATCAAG 60.136 52.381 16.68 0.00 39.86 3.02
2832 3445 0.879090 CAGCACAGCTCTGCAATCAA 59.121 50.000 16.68 0.00 39.86 2.57
2833 3446 0.250597 ACAGCACAGCTCTGCAATCA 60.251 50.000 16.68 0.00 39.86 2.57
2835 3448 2.189594 TTACAGCACAGCTCTGCAAT 57.810 45.000 16.68 6.02 39.86 3.56
2837 3450 1.002315 TCATTACAGCACAGCTCTGCA 59.998 47.619 16.68 0.00 39.86 4.41
2840 3453 1.905215 AGGTCATTACAGCACAGCTCT 59.095 47.619 0.00 0.00 36.40 4.09
2841 3454 2.275318 GAGGTCATTACAGCACAGCTC 58.725 52.381 0.00 0.00 36.40 4.09
2842 3455 1.625315 TGAGGTCATTACAGCACAGCT 59.375 47.619 0.00 0.00 40.77 4.24
2843 3456 1.734465 GTGAGGTCATTACAGCACAGC 59.266 52.381 0.00 0.00 33.71 4.40
2844 3457 2.350522 GGTGAGGTCATTACAGCACAG 58.649 52.381 0.00 0.00 34.62 3.66
2845 3458 1.337728 CGGTGAGGTCATTACAGCACA 60.338 52.381 0.00 0.00 34.62 4.57
2879 3911 7.153985 TCAAACCAAAAACCAGAATCATCATC 58.846 34.615 0.00 0.00 0.00 2.92
2889 3936 5.121142 GCATCATCATCAAACCAAAAACCAG 59.879 40.000 0.00 0.00 0.00 4.00
2890 3937 4.996122 GCATCATCATCAAACCAAAAACCA 59.004 37.500 0.00 0.00 0.00 3.67
2891 3938 4.996122 TGCATCATCATCAAACCAAAAACC 59.004 37.500 0.00 0.00 0.00 3.27
2893 3940 5.239351 CCTGCATCATCATCAAACCAAAAA 58.761 37.500 0.00 0.00 0.00 1.94
3088 4222 3.558931 ATCAATCAATCAGGCCGTACA 57.441 42.857 0.00 0.00 0.00 2.90
3096 4715 7.255173 GGAGGAGATCAACAATCAATCAATCAG 60.255 40.741 0.00 0.00 36.79 2.90
3122 4741 3.499737 GTGATGTTGCCGAGGCCG 61.500 66.667 12.05 0.00 41.09 6.13
3123 4742 3.499737 CGTGATGTTGCCGAGGCC 61.500 66.667 12.05 0.00 41.09 5.19
3124 4743 4.166011 GCGTGATGTTGCCGAGGC 62.166 66.667 7.26 7.26 42.35 4.70
3125 4744 3.499737 GGCGTGATGTTGCCGAGG 61.500 66.667 0.00 0.00 42.22 4.63
3190 4825 1.000955 CTTCCACGTCAGTAACTGCCT 59.999 52.381 0.00 0.00 0.00 4.75
3191 4826 1.000506 TCTTCCACGTCAGTAACTGCC 59.999 52.381 0.00 0.00 0.00 4.85
3210 5829 3.499737 CCCTGCACCGCATTCGTC 61.500 66.667 0.00 0.00 38.13 4.20
3409 6232 1.622232 GTAGTAGCCGTTGTCGAACC 58.378 55.000 0.00 0.00 39.71 3.62
3518 6341 1.671379 GAAGGCGGTCTGGTTGGAC 60.671 63.158 0.00 0.00 35.66 4.02
3519 6342 1.415672 AAGAAGGCGGTCTGGTTGGA 61.416 55.000 0.00 0.00 0.00 3.53
3657 6490 1.982395 TGCTACTACCACGGCAGCT 60.982 57.895 0.00 0.00 33.38 4.24
3658 6491 1.810030 GTGCTACTACCACGGCAGC 60.810 63.158 0.00 0.00 35.29 5.25
3659 6492 1.153628 GGTGCTACTACCACGGCAG 60.154 63.158 0.00 0.00 40.54 4.85
3660 6493 1.909287 TGGTGCTACTACCACGGCA 60.909 57.895 0.00 0.00 45.46 5.69
3661 6494 2.975536 TGGTGCTACTACCACGGC 59.024 61.111 0.00 0.00 45.46 5.68
3666 6499 1.541147 TGTACGTGTGGTGCTACTACC 59.459 52.381 0.00 0.00 41.24 3.18
3669 6502 2.297880 TGAATGTACGTGTGGTGCTACT 59.702 45.455 0.00 0.00 31.78 2.57
3676 6509 4.438880 CCTCTCTACTGAATGTACGTGTGG 60.439 50.000 0.00 0.00 0.00 4.17
3705 6538 1.778981 GGCCCATCCATCCATCCAT 59.221 57.895 0.00 0.00 34.01 3.41
3706 6539 2.832778 CGGCCCATCCATCCATCCA 61.833 63.158 0.00 0.00 34.01 3.41
3707 6540 1.856539 ATCGGCCCATCCATCCATCC 61.857 60.000 0.00 0.00 34.01 3.51
3708 6541 0.393537 GATCGGCCCATCCATCCATC 60.394 60.000 0.00 0.00 34.01 3.51
3709 6542 1.687612 GATCGGCCCATCCATCCAT 59.312 57.895 0.00 0.00 34.01 3.41
3724 6557 4.930963 AGAGACACATGACAGAATCGATC 58.069 43.478 0.00 0.00 0.00 3.69
3728 6561 4.402155 AGAGGAGAGACACATGACAGAATC 59.598 45.833 0.00 0.00 0.00 2.52
3756 6593 4.802051 GCGCATGGGCAGGGAGAA 62.802 66.667 28.03 0.00 41.24 2.87
3792 6629 3.701205 ATCGGCTATGACAATATGGCA 57.299 42.857 0.00 0.00 41.29 4.92
3908 6753 3.818773 ACTTGTTGATTAACCGGACCAAG 59.181 43.478 9.46 10.06 35.92 3.61
3978 6823 5.073311 AGTACATCCACTGTGACATGTAC 57.927 43.478 31.06 31.06 46.43 2.90
3979 6824 6.379988 ACATAGTACATCCACTGTGACATGTA 59.620 38.462 19.96 19.96 39.31 2.29
3980 6825 5.187772 ACATAGTACATCCACTGTGACATGT 59.812 40.000 21.41 21.41 39.31 3.21
3981 6826 5.521372 CACATAGTACATCCACTGTGACATG 59.479 44.000 9.86 12.81 39.31 3.21
3982 6827 5.422012 TCACATAGTACATCCACTGTGACAT 59.578 40.000 9.86 0.00 39.31 3.06
3983 6828 4.770010 TCACATAGTACATCCACTGTGACA 59.230 41.667 9.86 0.00 39.31 3.58
3986 6831 5.724328 ACTTCACATAGTACATCCACTGTG 58.276 41.667 0.00 0.00 41.80 3.66
4110 7059 0.179020 TGTTCACAGCTCACCTTGGG 60.179 55.000 0.00 0.00 0.00 4.12
4141 7090 7.703621 GGATGTTTGACTGAAAATATCACATGG 59.296 37.037 0.00 0.00 38.63 3.66
4169 7118 1.968540 GGCGTGCTTCTTGGAGCTT 60.969 57.895 2.36 0.00 43.11 3.74
4179 7128 1.065491 TGGATGTATTGAGGCGTGCTT 60.065 47.619 0.00 0.00 0.00 3.91
4181 7130 0.940126 CTGGATGTATTGAGGCGTGC 59.060 55.000 0.00 0.00 0.00 5.34
4182 7131 1.138859 TCCTGGATGTATTGAGGCGTG 59.861 52.381 0.00 0.00 0.00 5.34
4183 7132 1.496060 TCCTGGATGTATTGAGGCGT 58.504 50.000 0.00 0.00 0.00 5.68
4184 7133 2.213499 GTTCCTGGATGTATTGAGGCG 58.787 52.381 0.00 0.00 0.00 5.52
4185 7134 3.209410 CTGTTCCTGGATGTATTGAGGC 58.791 50.000 0.00 0.00 0.00 4.70
4196 7145 4.782691 TCACTATCATTTCCTGTTCCTGGA 59.217 41.667 0.00 0.00 0.00 3.86
4248 7302 3.559655 TGTGTGTTGAGAAACCTTGATCG 59.440 43.478 0.00 0.00 0.00 3.69
4284 7338 2.061773 CTGCCAACACGACTAACTCTG 58.938 52.381 0.00 0.00 0.00 3.35
4289 7343 0.320421 GAGGCTGCCAACACGACTAA 60.320 55.000 22.65 0.00 0.00 2.24
4291 7345 2.031163 GAGGCTGCCAACACGACT 59.969 61.111 22.65 0.00 0.00 4.18
4292 7346 3.050275 GGAGGCTGCCAACACGAC 61.050 66.667 22.65 2.89 0.00 4.34
4293 7347 1.549243 TATGGAGGCTGCCAACACGA 61.549 55.000 22.65 8.04 42.16 4.35
4294 7348 0.464373 ATATGGAGGCTGCCAACACG 60.464 55.000 22.65 0.00 42.16 4.49
4295 7349 1.027357 CATATGGAGGCTGCCAACAC 58.973 55.000 22.65 8.16 42.16 3.32
4296 7350 0.106569 CCATATGGAGGCTGCCAACA 60.107 55.000 22.65 18.87 42.16 3.33
4297 7351 0.183492 TCCATATGGAGGCTGCCAAC 59.817 55.000 20.98 13.45 42.16 3.77
4298 7352 2.631563 TCCATATGGAGGCTGCCAA 58.368 52.632 20.98 6.31 42.16 4.52
4299 7353 4.416901 TCCATATGGAGGCTGCCA 57.583 55.556 20.98 5.84 39.78 4.92
4322 7376 5.104735 TGTTTTTGGTTTGGCTTGGTAATCT 60.105 36.000 0.00 0.00 0.00 2.40
4330 7384 6.591001 AGATTATGTGTTTTTGGTTTGGCTT 58.409 32.000 0.00 0.00 0.00 4.35
4341 7395 7.201767 GCAGCTCTTATGGAGATTATGTGTTTT 60.202 37.037 0.00 0.00 44.45 2.43
4375 7429 1.275291 ACTGACAAGTGGGTCATACGG 59.725 52.381 0.00 0.00 45.97 4.02
4391 7445 3.261897 GGAAAAGGAGGATGTCTCACTGA 59.738 47.826 0.00 0.00 44.19 3.41
4407 7461 2.517959 TGCATTGGAGACTGGGAAAAG 58.482 47.619 0.00 0.00 0.00 2.27
4485 7539 2.483745 GCGTCTCGTCATCGTCCA 59.516 61.111 0.00 0.00 38.33 4.02
4486 7540 2.648102 CGCGTCTCGTCATCGTCC 60.648 66.667 0.00 0.00 38.33 4.79
4510 7564 4.666412 TGGTACCATCTTGGATTTTCCA 57.334 40.909 11.60 0.00 46.61 3.53
4519 7573 4.165779 GTGCGAATTTTGGTACCATCTTG 58.834 43.478 17.17 5.27 0.00 3.02
4533 7587 2.413112 CGACAACATCTCTGTGCGAATT 59.587 45.455 0.00 0.00 35.22 2.17
4534 7588 1.995484 CGACAACATCTCTGTGCGAAT 59.005 47.619 0.00 0.00 35.22 3.34
4535 7589 1.269569 ACGACAACATCTCTGTGCGAA 60.270 47.619 0.00 0.00 35.22 4.70
4536 7590 0.313987 ACGACAACATCTCTGTGCGA 59.686 50.000 0.00 0.00 35.22 5.10
4537 7591 0.710567 GACGACAACATCTCTGTGCG 59.289 55.000 0.00 0.00 35.22 5.34
4538 7592 0.710567 CGACGACAACATCTCTGTGC 59.289 55.000 0.00 0.00 35.22 4.57
4539 7593 1.335964 ACCGACGACAACATCTCTGTG 60.336 52.381 0.00 0.00 35.22 3.66
4540 7594 0.959553 ACCGACGACAACATCTCTGT 59.040 50.000 0.00 0.00 37.12 3.41
4541 7595 1.068541 TCACCGACGACAACATCTCTG 60.069 52.381 0.00 0.00 0.00 3.35
4542 7596 1.068472 GTCACCGACGACAACATCTCT 60.068 52.381 0.00 0.00 35.88 3.10
4543 7597 1.068472 AGTCACCGACGACAACATCTC 60.068 52.381 0.00 0.00 38.43 2.75
4544 7598 0.959553 AGTCACCGACGACAACATCT 59.040 50.000 0.00 0.00 38.43 2.90
4545 7599 1.337821 GAGTCACCGACGACAACATC 58.662 55.000 0.00 0.00 38.43 3.06
4546 7600 0.386858 CGAGTCACCGACGACAACAT 60.387 55.000 0.00 0.00 38.43 2.71
4547 7601 1.009335 CGAGTCACCGACGACAACA 60.009 57.895 0.00 0.00 38.43 3.33
4548 7602 0.593263 AACGAGTCACCGACGACAAC 60.593 55.000 0.00 0.00 38.43 3.32
4570 7624 0.095935 CGAAGCTGAAATGGCTGTCG 59.904 55.000 0.00 0.00 40.19 4.35
4571 7625 0.449388 CCGAAGCTGAAATGGCTGTC 59.551 55.000 0.00 0.00 40.19 3.51
4575 7629 1.508088 CACCCGAAGCTGAAATGGC 59.492 57.895 0.00 0.00 0.00 4.40
4577 7631 1.508088 GGCACCCGAAGCTGAAATG 59.492 57.895 0.00 0.00 0.00 2.32
4615 7669 3.181493 ACAATTTCGAGCATTGCAGATCC 60.181 43.478 11.91 0.00 35.36 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.