Multiple sequence alignment - TraesCS7A01G427500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G427500 chr7A 100.000 3089 0 0 1 3089 620638025 620634937 0.000000e+00 5705.0
1 TraesCS7A01G427500 chr7D 91.596 1773 90 23 811 2551 538990258 538988513 0.000000e+00 2394.0
2 TraesCS7A01G427500 chr7D 87.854 494 56 4 239 730 538992176 538991685 7.430000e-161 577.0
3 TraesCS7A01G427500 chr7D 88.330 437 40 8 2657 3088 538988499 538988069 5.910000e-142 514.0
4 TraesCS7A01G427500 chr7B 91.228 1710 81 18 790 2472 581796785 581795118 0.000000e+00 2263.0
5 TraesCS7A01G427500 chr7B 85.242 454 36 12 2608 3050 581795043 581794610 3.660000e-119 438.0
6 TraesCS7A01G427500 chr5B 76.989 352 56 10 33 364 572327289 572326943 8.800000e-41 178.0
7 TraesCS7A01G427500 chr6A 89.888 89 9 0 641 729 420832765 420832677 7.000000e-22 115.0
8 TraesCS7A01G427500 chr1A 89.888 89 9 0 641 729 335028424 335028336 7.000000e-22 115.0
9 TraesCS7A01G427500 chr6B 87.234 94 11 1 636 729 21321819 21321911 4.210000e-19 106.0
10 TraesCS7A01G427500 chr6B 86.667 90 11 1 641 729 462025908 462025997 7.050000e-17 99.0
11 TraesCS7A01G427500 chr3D 86.517 89 12 0 641 729 589215770 589215858 7.050000e-17 99.0
12 TraesCS7A01G427500 chr6D 87.805 82 10 0 640 721 298912548 298912629 2.540000e-16 97.1
13 TraesCS7A01G427500 chr2A 86.517 89 11 1 641 729 16374653 16374566 2.540000e-16 97.1
14 TraesCS7A01G427500 chr3B 85.556 90 13 0 640 729 397669199 397669110 9.120000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G427500 chr7A 620634937 620638025 3088 True 5705.000000 5705 100.000 1 3089 1 chr7A.!!$R1 3088
1 TraesCS7A01G427500 chr7D 538988069 538992176 4107 True 1161.666667 2394 89.260 239 3088 3 chr7D.!!$R1 2849
2 TraesCS7A01G427500 chr7B 581794610 581796785 2175 True 1350.500000 2263 88.235 790 3050 2 chr7B.!!$R1 2260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.031721 AACCGTTGGTCTGAGTCGTC 59.968 55.0 0.00 0.00 33.12 4.20 F
175 176 0.035439 TCGGTTTGAATCCTCCCTGC 60.035 55.0 0.00 0.00 0.00 4.85 F
237 238 0.037605 CCGGTTCAAGCGTTCCTAGT 60.038 55.0 8.41 0.00 37.40 2.57 F
307 309 0.042535 CTTGTACGCAACCACACGTG 60.043 55.0 15.48 15.48 43.44 4.49 F
508 510 0.105913 TTGTGGGGGAGACAAAACCC 60.106 55.0 0.00 0.00 44.89 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 2477 0.405585 TTCTCCAAGAGGCAAAGGGG 59.594 55.000 0.00 0.00 33.74 4.79 R
1168 2516 0.608308 GCCACGGGGATATAAAGGGC 60.608 60.000 8.67 0.00 35.59 5.19 R
1232 2600 1.287730 GCGGAGATCGGACATGATGC 61.288 60.000 0.00 0.00 39.69 3.91 R
1602 2970 2.035442 GTCCTTGGCGAGGCACTTC 61.035 63.158 16.55 0.58 45.87 3.01 R
2344 3729 1.626686 TGTGCAATCCCACCGATTTT 58.373 45.000 0.00 0.00 39.28 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.879462 GACACCGTCATCGCCGTC 60.879 66.667 0.00 0.00 35.54 4.79
18 19 4.771356 ACACCGTCATCGCCGTCG 62.771 66.667 0.00 0.00 35.54 5.12
22 23 4.191485 CGTCATCGCCGTCGCAAC 62.191 66.667 0.00 0.00 35.26 4.17
23 24 3.849953 GTCATCGCCGTCGCAACC 61.850 66.667 0.00 0.00 35.26 3.77
30 31 3.708734 CCGTCGCAACCGTTGGTC 61.709 66.667 13.12 0.00 33.12 4.02
31 32 2.660552 CGTCGCAACCGTTGGTCT 60.661 61.111 13.12 0.00 33.12 3.85
32 33 2.935955 GTCGCAACCGTTGGTCTG 59.064 61.111 13.12 0.00 33.12 3.51
33 34 1.593209 GTCGCAACCGTTGGTCTGA 60.593 57.895 13.12 0.00 33.12 3.27
34 35 1.300620 TCGCAACCGTTGGTCTGAG 60.301 57.895 13.12 0.00 33.12 3.35
35 36 1.594293 CGCAACCGTTGGTCTGAGT 60.594 57.895 13.12 0.00 33.12 3.41
36 37 1.557443 CGCAACCGTTGGTCTGAGTC 61.557 60.000 13.12 0.00 33.12 3.36
37 38 1.557443 GCAACCGTTGGTCTGAGTCG 61.557 60.000 13.12 0.00 33.12 4.18
38 39 0.249322 CAACCGTTGGTCTGAGTCGT 60.249 55.000 3.10 0.00 33.12 4.34
39 40 0.031721 AACCGTTGGTCTGAGTCGTC 59.968 55.000 0.00 0.00 33.12 4.20
40 41 1.105167 ACCGTTGGTCTGAGTCGTCA 61.105 55.000 0.00 0.00 0.00 4.35
41 42 0.663568 CCGTTGGTCTGAGTCGTCAC 60.664 60.000 0.00 0.00 0.00 3.67
42 43 0.663568 CGTTGGTCTGAGTCGTCACC 60.664 60.000 0.00 0.00 0.00 4.02
43 44 0.663568 GTTGGTCTGAGTCGTCACCG 60.664 60.000 1.66 0.00 0.00 4.94
44 45 2.126424 GGTCTGAGTCGTCACCGC 60.126 66.667 0.00 0.00 0.00 5.68
45 46 2.126424 GTCTGAGTCGTCACCGCC 60.126 66.667 0.00 0.00 0.00 6.13
46 47 3.733960 TCTGAGTCGTCACCGCCG 61.734 66.667 0.00 0.00 0.00 6.46
61 62 2.438254 CCGCAGGTGCCAATAGCA 60.438 61.111 0.00 0.00 46.79 3.49
70 71 1.228094 GCCAATAGCAGAGGAGGGC 60.228 63.158 0.00 0.00 42.97 5.19
71 72 1.704007 GCCAATAGCAGAGGAGGGCT 61.704 60.000 0.00 0.00 42.97 5.19
72 73 0.842635 CCAATAGCAGAGGAGGGCTT 59.157 55.000 0.00 0.00 41.41 4.35
73 74 2.050144 CCAATAGCAGAGGAGGGCTTA 58.950 52.381 0.00 0.00 41.41 3.09
74 75 2.641815 CCAATAGCAGAGGAGGGCTTAT 59.358 50.000 0.00 0.00 41.41 1.73
75 76 3.307339 CCAATAGCAGAGGAGGGCTTATC 60.307 52.174 0.00 0.00 41.41 1.75
76 77 2.016905 TAGCAGAGGAGGGCTTATCC 57.983 55.000 0.00 0.00 41.41 2.59
81 82 3.567902 AGGAGGGCTTATCCTGGAG 57.432 57.895 1.52 0.00 45.67 3.86
82 83 0.766288 AGGAGGGCTTATCCTGGAGC 60.766 60.000 1.52 0.00 45.67 4.70
87 88 3.410960 GCTTATCCTGGAGCCAAGG 57.589 57.895 1.52 0.00 32.80 3.61
88 89 0.179006 GCTTATCCTGGAGCCAAGGG 60.179 60.000 1.52 0.00 32.80 3.95
89 90 1.216990 CTTATCCTGGAGCCAAGGGT 58.783 55.000 1.52 0.00 0.00 4.34
90 91 2.408565 CTTATCCTGGAGCCAAGGGTA 58.591 52.381 1.52 0.00 0.00 3.69
91 92 2.579624 TATCCTGGAGCCAAGGGTAA 57.420 50.000 1.52 0.00 0.00 2.85
92 93 1.216990 ATCCTGGAGCCAAGGGTAAG 58.783 55.000 1.52 0.00 0.00 2.34
93 94 1.077429 CCTGGAGCCAAGGGTAAGC 60.077 63.158 0.00 0.00 0.00 3.09
94 95 1.685224 CTGGAGCCAAGGGTAAGCA 59.315 57.895 0.00 0.00 0.00 3.91
95 96 0.038166 CTGGAGCCAAGGGTAAGCAA 59.962 55.000 0.00 0.00 0.00 3.91
96 97 0.038166 TGGAGCCAAGGGTAAGCAAG 59.962 55.000 0.00 0.00 0.00 4.01
97 98 0.038310 GGAGCCAAGGGTAAGCAAGT 59.962 55.000 0.00 0.00 0.00 3.16
98 99 1.280998 GGAGCCAAGGGTAAGCAAGTA 59.719 52.381 0.00 0.00 0.00 2.24
99 100 2.290705 GGAGCCAAGGGTAAGCAAGTAA 60.291 50.000 0.00 0.00 0.00 2.24
100 101 3.418047 GAGCCAAGGGTAAGCAAGTAAA 58.582 45.455 0.00 0.00 0.00 2.01
101 102 4.017126 GAGCCAAGGGTAAGCAAGTAAAT 58.983 43.478 0.00 0.00 0.00 1.40
102 103 3.763897 AGCCAAGGGTAAGCAAGTAAATG 59.236 43.478 0.00 0.00 0.00 2.32
103 104 3.509967 GCCAAGGGTAAGCAAGTAAATGT 59.490 43.478 0.00 0.00 0.00 2.71
104 105 4.618227 GCCAAGGGTAAGCAAGTAAATGTG 60.618 45.833 0.00 0.00 0.00 3.21
105 106 4.764823 CCAAGGGTAAGCAAGTAAATGTGA 59.235 41.667 0.00 0.00 0.00 3.58
106 107 5.106157 CCAAGGGTAAGCAAGTAAATGTGAG 60.106 44.000 0.00 0.00 0.00 3.51
107 108 5.499004 AGGGTAAGCAAGTAAATGTGAGA 57.501 39.130 0.00 0.00 0.00 3.27
108 109 5.491982 AGGGTAAGCAAGTAAATGTGAGAG 58.508 41.667 0.00 0.00 0.00 3.20
109 110 4.636206 GGGTAAGCAAGTAAATGTGAGAGG 59.364 45.833 0.00 0.00 0.00 3.69
110 111 4.636206 GGTAAGCAAGTAAATGTGAGAGGG 59.364 45.833 0.00 0.00 0.00 4.30
111 112 2.716217 AGCAAGTAAATGTGAGAGGGC 58.284 47.619 0.00 0.00 0.00 5.19
112 113 1.398390 GCAAGTAAATGTGAGAGGGCG 59.602 52.381 0.00 0.00 0.00 6.13
113 114 2.009774 CAAGTAAATGTGAGAGGGCGG 58.990 52.381 0.00 0.00 0.00 6.13
114 115 0.541863 AGTAAATGTGAGAGGGCGGG 59.458 55.000 0.00 0.00 0.00 6.13
115 116 0.463833 GTAAATGTGAGAGGGCGGGG 60.464 60.000 0.00 0.00 0.00 5.73
116 117 1.632018 TAAATGTGAGAGGGCGGGGG 61.632 60.000 0.00 0.00 0.00 5.40
117 118 4.741239 ATGTGAGAGGGCGGGGGT 62.741 66.667 0.00 0.00 0.00 4.95
118 119 2.833151 AATGTGAGAGGGCGGGGGTA 62.833 60.000 0.00 0.00 0.00 3.69
119 120 2.446036 GTGAGAGGGCGGGGGTAT 60.446 66.667 0.00 0.00 0.00 2.73
120 121 1.152398 GTGAGAGGGCGGGGGTATA 60.152 63.158 0.00 0.00 0.00 1.47
121 122 0.544595 GTGAGAGGGCGGGGGTATAT 60.545 60.000 0.00 0.00 0.00 0.86
122 123 0.192566 TGAGAGGGCGGGGGTATATT 59.807 55.000 0.00 0.00 0.00 1.28
123 124 1.359168 GAGAGGGCGGGGGTATATTT 58.641 55.000 0.00 0.00 0.00 1.40
124 125 1.278413 GAGAGGGCGGGGGTATATTTC 59.722 57.143 0.00 0.00 0.00 2.17
125 126 0.036671 GAGGGCGGGGGTATATTTCG 60.037 60.000 0.00 0.00 0.00 3.46
126 127 1.673337 GGGCGGGGGTATATTTCGC 60.673 63.158 0.00 0.00 44.80 4.70
127 128 2.030958 GGCGGGGGTATATTTCGCG 61.031 63.158 0.00 0.00 46.22 5.87
128 129 3.557824 CGGGGGTATATTTCGCGC 58.442 61.111 0.00 0.00 0.00 6.86
129 130 2.030958 CGGGGGTATATTTCGCGCC 61.031 63.158 0.00 0.00 34.90 6.53
130 131 1.071814 GGGGGTATATTTCGCGCCA 59.928 57.895 0.00 0.00 37.02 5.69
131 132 0.322187 GGGGGTATATTTCGCGCCAT 60.322 55.000 0.00 0.00 37.02 4.40
132 133 1.084289 GGGGTATATTTCGCGCCATC 58.916 55.000 0.00 0.00 35.61 3.51
133 134 1.084289 GGGTATATTTCGCGCCATCC 58.916 55.000 0.00 0.00 0.00 3.51
134 135 1.084289 GGTATATTTCGCGCCATCCC 58.916 55.000 0.00 0.00 0.00 3.85
135 136 0.719465 GTATATTTCGCGCCATCCCG 59.281 55.000 0.00 0.00 0.00 5.14
145 146 3.866582 CCATCCCGCCTCCACCTC 61.867 72.222 0.00 0.00 0.00 3.85
146 147 2.765807 CATCCCGCCTCCACCTCT 60.766 66.667 0.00 0.00 0.00 3.69
147 148 2.444895 ATCCCGCCTCCACCTCTC 60.445 66.667 0.00 0.00 0.00 3.20
148 149 4.779733 TCCCGCCTCCACCTCTCC 62.780 72.222 0.00 0.00 0.00 3.71
150 151 3.465403 CCGCCTCCACCTCTCCAG 61.465 72.222 0.00 0.00 0.00 3.86
151 152 4.154347 CGCCTCCACCTCTCCAGC 62.154 72.222 0.00 0.00 0.00 4.85
152 153 3.791586 GCCTCCACCTCTCCAGCC 61.792 72.222 0.00 0.00 0.00 4.85
153 154 2.284921 CCTCCACCTCTCCAGCCA 60.285 66.667 0.00 0.00 0.00 4.75
154 155 1.692042 CCTCCACCTCTCCAGCCAT 60.692 63.158 0.00 0.00 0.00 4.40
155 156 1.694133 CCTCCACCTCTCCAGCCATC 61.694 65.000 0.00 0.00 0.00 3.51
156 157 0.690411 CTCCACCTCTCCAGCCATCT 60.690 60.000 0.00 0.00 0.00 2.90
157 158 0.689080 TCCACCTCTCCAGCCATCTC 60.689 60.000 0.00 0.00 0.00 2.75
158 159 1.440893 CACCTCTCCAGCCATCTCG 59.559 63.158 0.00 0.00 0.00 4.04
159 160 1.760086 ACCTCTCCAGCCATCTCGG 60.760 63.158 0.00 0.00 38.11 4.63
160 161 1.760086 CCTCTCCAGCCATCTCGGT 60.760 63.158 0.00 0.00 36.97 4.69
161 162 1.333636 CCTCTCCAGCCATCTCGGTT 61.334 60.000 0.00 0.00 36.97 4.44
162 163 0.539051 CTCTCCAGCCATCTCGGTTT 59.461 55.000 0.00 0.00 36.97 3.27
163 164 0.250234 TCTCCAGCCATCTCGGTTTG 59.750 55.000 0.00 0.00 36.97 2.93
164 165 0.250234 CTCCAGCCATCTCGGTTTGA 59.750 55.000 0.00 0.00 36.97 2.69
165 166 0.690192 TCCAGCCATCTCGGTTTGAA 59.310 50.000 0.00 0.00 36.97 2.69
166 167 1.281867 TCCAGCCATCTCGGTTTGAAT 59.718 47.619 0.00 0.00 36.97 2.57
167 168 1.672881 CCAGCCATCTCGGTTTGAATC 59.327 52.381 0.00 0.00 36.97 2.52
168 169 1.672881 CAGCCATCTCGGTTTGAATCC 59.327 52.381 0.00 0.00 36.97 3.01
169 170 1.561542 AGCCATCTCGGTTTGAATCCT 59.438 47.619 0.00 0.00 36.97 3.24
170 171 1.943340 GCCATCTCGGTTTGAATCCTC 59.057 52.381 0.00 0.00 36.97 3.71
171 172 2.565841 CCATCTCGGTTTGAATCCTCC 58.434 52.381 0.00 0.00 0.00 4.30
172 173 2.565841 CATCTCGGTTTGAATCCTCCC 58.434 52.381 0.00 0.00 0.00 4.30
173 174 1.952621 TCTCGGTTTGAATCCTCCCT 58.047 50.000 0.00 0.00 0.00 4.20
174 175 1.555075 TCTCGGTTTGAATCCTCCCTG 59.445 52.381 0.00 0.00 0.00 4.45
175 176 0.035439 TCGGTTTGAATCCTCCCTGC 60.035 55.000 0.00 0.00 0.00 4.85
176 177 0.322456 CGGTTTGAATCCTCCCTGCA 60.322 55.000 0.00 0.00 0.00 4.41
177 178 1.177401 GGTTTGAATCCTCCCTGCAC 58.823 55.000 0.00 0.00 0.00 4.57
178 179 1.177401 GTTTGAATCCTCCCTGCACC 58.823 55.000 0.00 0.00 0.00 5.01
179 180 0.776810 TTTGAATCCTCCCTGCACCA 59.223 50.000 0.00 0.00 0.00 4.17
180 181 0.329261 TTGAATCCTCCCTGCACCAG 59.671 55.000 0.00 0.00 0.00 4.00
181 182 1.452833 GAATCCTCCCTGCACCAGC 60.453 63.158 0.00 0.00 42.57 4.85
182 183 1.919600 GAATCCTCCCTGCACCAGCT 61.920 60.000 0.00 0.00 42.74 4.24
183 184 1.504275 AATCCTCCCTGCACCAGCTT 61.504 55.000 0.00 0.00 42.74 3.74
184 185 1.504275 ATCCTCCCTGCACCAGCTTT 61.504 55.000 0.00 0.00 42.74 3.51
185 186 1.228675 CCTCCCTGCACCAGCTTTT 60.229 57.895 0.00 0.00 42.74 2.27
186 187 1.530013 CCTCCCTGCACCAGCTTTTG 61.530 60.000 0.00 0.00 42.74 2.44
197 198 3.259930 GCTTTTGCGCCCGAGTTA 58.740 55.556 4.18 0.00 34.86 2.24
198 199 1.134694 GCTTTTGCGCCCGAGTTAG 59.865 57.895 4.18 0.00 34.86 2.34
199 200 1.134694 CTTTTGCGCCCGAGTTAGC 59.865 57.895 4.18 0.00 0.00 3.09
200 201 2.253414 CTTTTGCGCCCGAGTTAGCC 62.253 60.000 4.18 0.00 0.00 3.93
201 202 2.741486 TTTTGCGCCCGAGTTAGCCT 62.741 55.000 4.18 0.00 0.00 4.58
202 203 3.950794 TTGCGCCCGAGTTAGCCTG 62.951 63.158 4.18 0.00 0.00 4.85
204 205 3.771160 CGCCCGAGTTAGCCTGGT 61.771 66.667 0.00 0.00 0.00 4.00
205 206 2.669240 GCCCGAGTTAGCCTGGTT 59.331 61.111 0.00 0.00 0.00 3.67
206 207 1.745489 GCCCGAGTTAGCCTGGTTG 60.745 63.158 0.00 0.00 0.00 3.77
207 208 1.745489 CCCGAGTTAGCCTGGTTGC 60.745 63.158 0.00 0.00 0.00 4.17
208 209 1.745489 CCGAGTTAGCCTGGTTGCC 60.745 63.158 0.00 0.00 0.00 4.52
209 210 1.296715 CGAGTTAGCCTGGTTGCCT 59.703 57.895 0.00 0.00 0.00 4.75
210 211 1.021390 CGAGTTAGCCTGGTTGCCTG 61.021 60.000 0.00 0.00 0.00 4.85
211 212 0.678048 GAGTTAGCCTGGTTGCCTGG 60.678 60.000 6.71 6.71 44.16 4.45
212 213 1.133809 AGTTAGCCTGGTTGCCTGGA 61.134 55.000 14.14 0.00 44.09 3.86
213 214 0.251165 GTTAGCCTGGTTGCCTGGAA 60.251 55.000 14.14 0.00 44.09 3.53
214 215 0.038166 TTAGCCTGGTTGCCTGGAAG 59.962 55.000 14.14 0.00 44.09 3.46
215 216 2.484287 TAGCCTGGTTGCCTGGAAGC 62.484 60.000 14.14 0.00 44.09 3.86
216 217 2.437897 CCTGGTTGCCTGGAAGCT 59.562 61.111 0.00 0.00 44.09 3.74
217 218 1.975407 CCTGGTTGCCTGGAAGCTG 60.975 63.158 0.00 3.30 44.09 4.24
218 219 2.598394 TGGTTGCCTGGAAGCTGC 60.598 61.111 0.00 0.00 0.00 5.25
219 220 3.376918 GGTTGCCTGGAAGCTGCC 61.377 66.667 2.64 2.64 0.00 4.85
220 221 3.741476 GTTGCCTGGAAGCTGCCG 61.741 66.667 6.16 0.44 0.00 5.69
224 225 2.747855 CCTGGAAGCTGCCGGTTC 60.748 66.667 19.02 11.16 44.73 3.62
225 226 2.032528 CTGGAAGCTGCCGGTTCA 59.967 61.111 19.56 7.08 46.69 3.18
226 227 1.600636 CTGGAAGCTGCCGGTTCAA 60.601 57.895 19.56 9.38 46.69 2.69
227 228 1.580845 CTGGAAGCTGCCGGTTCAAG 61.581 60.000 19.56 14.79 46.69 3.02
228 229 2.563427 GAAGCTGCCGGTTCAAGC 59.437 61.111 14.23 7.91 44.81 4.01
229 230 3.314388 GAAGCTGCCGGTTCAAGCG 62.314 63.158 14.23 0.85 44.81 4.68
230 231 4.626081 AGCTGCCGGTTCAAGCGT 62.626 61.111 8.41 0.00 37.40 5.07
231 232 3.660111 GCTGCCGGTTCAAGCGTT 61.660 61.111 8.41 0.00 37.40 4.84
232 233 2.556287 CTGCCGGTTCAAGCGTTC 59.444 61.111 8.41 0.00 37.40 3.95
233 234 2.966309 CTGCCGGTTCAAGCGTTCC 61.966 63.158 8.41 0.00 37.40 3.62
234 235 2.668550 GCCGGTTCAAGCGTTCCT 60.669 61.111 8.41 0.00 37.40 3.36
235 236 1.375013 GCCGGTTCAAGCGTTCCTA 60.375 57.895 8.41 0.00 37.40 2.94
236 237 1.359459 GCCGGTTCAAGCGTTCCTAG 61.359 60.000 8.41 0.00 37.40 3.02
237 238 0.037605 CCGGTTCAAGCGTTCCTAGT 60.038 55.000 8.41 0.00 37.40 2.57
241 242 1.727335 GTTCAAGCGTTCCTAGTGAGC 59.273 52.381 0.00 0.00 0.00 4.26
244 245 0.685097 AAGCGTTCCTAGTGAGCCAA 59.315 50.000 0.00 0.00 0.00 4.52
259 260 0.969409 GCCAAGCTCTGGGATGCTTT 60.969 55.000 14.32 0.00 45.91 3.51
261 262 2.726821 CCAAGCTCTGGGATGCTTTAA 58.273 47.619 6.96 0.00 45.91 1.52
264 265 4.517285 CAAGCTCTGGGATGCTTTAAGTA 58.483 43.478 0.00 0.00 45.91 2.24
265 266 5.128919 CAAGCTCTGGGATGCTTTAAGTAT 58.871 41.667 0.00 0.00 45.91 2.12
266 267 4.967036 AGCTCTGGGATGCTTTAAGTATC 58.033 43.478 13.42 13.42 36.72 2.24
268 269 4.740934 GCTCTGGGATGCTTTAAGTATCGT 60.741 45.833 14.91 0.00 38.08 3.73
271 272 2.221055 GGGATGCTTTAAGTATCGTGCG 59.779 50.000 14.91 0.00 38.08 5.34
275 276 5.404366 GGATGCTTTAAGTATCGTGCGAATA 59.596 40.000 14.91 0.00 38.08 1.75
276 277 5.630896 TGCTTTAAGTATCGTGCGAATAC 57.369 39.130 0.00 2.90 0.00 1.89
292 294 4.730657 CGAATACGAGTCAACCTACTTGT 58.269 43.478 0.00 0.00 44.56 3.16
295 297 3.549299 ACGAGTCAACCTACTTGTACG 57.451 47.619 0.00 0.00 41.40 3.67
302 304 2.159327 ACCTACTTGTACGCAACCAC 57.841 50.000 0.00 0.00 0.00 4.16
306 308 0.460635 ACTTGTACGCAACCACACGT 60.461 50.000 0.00 0.00 45.85 4.49
307 309 0.042535 CTTGTACGCAACCACACGTG 60.043 55.000 15.48 15.48 43.44 4.49
319 321 1.269174 CCACACGTGCCATTTTCATCA 59.731 47.619 17.22 0.00 0.00 3.07
323 325 1.820519 ACGTGCCATTTTCATCATGCT 59.179 42.857 0.00 0.00 0.00 3.79
326 328 2.097954 GTGCCATTTTCATCATGCTCGA 59.902 45.455 0.00 0.00 0.00 4.04
327 329 2.097954 TGCCATTTTCATCATGCTCGAC 59.902 45.455 0.00 0.00 0.00 4.20
331 333 2.315925 TTTCATCATGCTCGACCCTC 57.684 50.000 0.00 0.00 0.00 4.30
355 357 1.153369 GCTCTATGCAGCCGACCAA 60.153 57.895 0.00 0.00 42.31 3.67
367 369 1.444836 CCGACCAAACGCATCCTTAA 58.555 50.000 0.00 0.00 0.00 1.85
369 371 1.201877 CGACCAAACGCATCCTTAACG 60.202 52.381 0.00 0.00 0.00 3.18
379 381 2.343101 CATCCTTAACGAACGCCTTGA 58.657 47.619 0.00 0.00 0.00 3.02
385 387 4.809426 CCTTAACGAACGCCTTGATTATCT 59.191 41.667 0.00 0.00 0.00 1.98
408 410 6.040278 TCTGACATGGCTTAAAACACATCAAA 59.960 34.615 0.00 0.00 0.00 2.69
412 414 7.444299 ACATGGCTTAAAACACATCAAAATCT 58.556 30.769 0.00 0.00 0.00 2.40
424 426 7.801547 CACATCAAAATCTGTGTTCCATAAC 57.198 36.000 0.00 0.00 38.33 1.89
435 437 1.392510 GTTCCATAACGAACGACAGGC 59.607 52.381 0.14 0.00 33.35 4.85
440 442 0.388134 TAACGAACGACAGGCAGAGC 60.388 55.000 0.14 0.00 0.00 4.09
451 453 2.811317 GCAGAGCGTTCAGACCGG 60.811 66.667 0.00 0.00 0.00 5.28
465 467 6.552629 GTTCAGACCGGAATTCTAAAAATCC 58.447 40.000 9.46 0.00 31.97 3.01
482 484 5.526010 AAATCCGACGTCAGATTTACAAC 57.474 39.130 29.46 0.00 40.13 3.32
489 491 4.806330 ACGTCAGATTTACAACGAGATGT 58.194 39.130 0.31 0.00 38.44 3.06
503 505 1.351017 GAGATGTTGTGGGGGAGACAA 59.649 52.381 0.00 0.00 0.00 3.18
508 510 0.105913 TTGTGGGGGAGACAAAACCC 60.106 55.000 0.00 0.00 44.89 4.11
581 583 3.865011 AACATGTTGTGCACTGTTTGA 57.135 38.095 19.41 0.00 30.40 2.69
587 589 0.451383 TGTGCACTGTTTGACACTGC 59.549 50.000 19.41 5.96 38.07 4.40
605 607 2.029838 GCAGTGGCACTATAGCAAGT 57.970 50.000 21.59 0.00 40.72 3.16
608 610 3.193263 CAGTGGCACTATAGCAAGTCTG 58.807 50.000 21.59 0.00 35.83 3.51
656 658 2.469516 TGCGCGAGTAAATTGCAAAAAC 59.530 40.909 12.10 1.89 38.34 2.43
659 661 2.407026 GCGAGTAAATTGCAAAAACCCG 59.593 45.455 1.71 5.99 38.31 5.28
669 671 1.205893 GCAAAAACCCGCCATAATCCA 59.794 47.619 0.00 0.00 0.00 3.41
673 675 0.916086 AACCCGCCATAATCCAGTCA 59.084 50.000 0.00 0.00 0.00 3.41
730 732 2.094597 ACATGCATTTTGATGGGTGTCG 60.095 45.455 0.00 0.00 0.00 4.35
731 733 0.243365 TGCATTTTGATGGGTGTCGC 59.757 50.000 0.00 0.00 0.00 5.19
734 736 2.098934 GCATTTTGATGGGTGTCGCATA 59.901 45.455 0.00 0.00 37.16 3.14
736 738 4.737352 GCATTTTGATGGGTGTCGCATAAT 60.737 41.667 0.00 0.00 37.16 1.28
741 2053 4.967036 TGATGGGTGTCGCATAATTATGA 58.033 39.130 26.22 6.23 37.16 2.15
743 2055 5.412286 TGATGGGTGTCGCATAATTATGATG 59.588 40.000 26.22 17.62 37.16 3.07
744 2056 4.967036 TGGGTGTCGCATAATTATGATGA 58.033 39.130 26.22 19.34 35.75 2.92
745 2057 5.559770 TGGGTGTCGCATAATTATGATGAT 58.440 37.500 26.22 0.00 35.75 2.45
749 2061 7.867403 GGGTGTCGCATAATTATGATGATTTTT 59.133 33.333 26.22 0.00 35.75 1.94
772 2084 3.107601 TGTAATCTACTCTGGCTTGGCT 58.892 45.455 0.00 0.00 0.00 4.75
773 2085 2.998316 AATCTACTCTGGCTTGGCTC 57.002 50.000 0.00 0.00 0.00 4.70
774 2086 1.127343 ATCTACTCTGGCTTGGCTCC 58.873 55.000 0.00 0.00 0.00 4.70
776 2088 2.914777 CTACTCTGGCTTGGCTCCGC 62.915 65.000 0.00 0.00 0.00 5.54
853 2201 4.099120 GTCACACAGTGATCTATCGTGAC 58.901 47.826 7.81 15.22 44.63 3.67
897 2245 2.507058 CCATGATCCACCTCTCTTTCCA 59.493 50.000 0.00 0.00 0.00 3.53
898 2246 3.054139 CCATGATCCACCTCTCTTTCCAA 60.054 47.826 0.00 0.00 0.00 3.53
939 2287 2.440569 GCACGACGAAGAGAGCTGC 61.441 63.158 0.00 0.00 0.00 5.25
940 2288 1.211449 CACGACGAAGAGAGCTGCT 59.789 57.895 0.00 0.00 0.00 4.24
941 2289 1.069924 CACGACGAAGAGAGCTGCTG 61.070 60.000 7.01 0.00 0.00 4.41
957 2305 4.350441 TGCACATGTCGACGGCGA 62.350 61.111 10.67 10.67 45.71 5.54
1014 2362 2.109799 CCGATGCGCCAGGATTCT 59.890 61.111 4.18 0.00 0.00 2.40
1024 2372 1.379642 CCAGGATTCTTTGCGGAGGC 61.380 60.000 0.00 0.00 40.52 4.70
1051 2399 4.868116 ACCCGCCGTGCAACACTT 62.868 61.111 0.00 0.00 35.74 3.16
1059 2407 1.268539 CCGTGCAACACTTCAAGGAAC 60.269 52.381 0.00 0.00 35.74 3.62
1081 2429 0.798771 GTCAACTCGCAGCGTAGAGG 60.799 60.000 15.93 8.64 38.72 3.69
1094 2442 2.678190 GCGTAGAGGCAGAGGAAAACAT 60.678 50.000 0.00 0.00 0.00 2.71
1162 2510 5.388654 TCTTGGAGAAAAAGATTTCCAGCT 58.611 37.500 0.00 0.00 44.96 4.24
1163 2511 5.835280 TCTTGGAGAAAAAGATTTCCAGCTT 59.165 36.000 0.00 0.00 44.96 3.74
1168 2516 3.813529 AAAAGATTTCCAGCTTCGACG 57.186 42.857 0.00 0.00 0.00 5.12
1513 2881 1.934220 GCACCTCATCCTCGACGACA 61.934 60.000 0.00 0.00 0.00 4.35
1602 2970 3.584052 CCGGAGCCCTACGTCGAG 61.584 72.222 0.00 0.00 34.48 4.04
1772 3140 4.748679 GCGCTACGTGTCGTCGGT 62.749 66.667 0.00 0.00 41.54 4.69
2145 3528 4.400120 ACAAAAGGTAAAATCTACGGCCA 58.600 39.130 2.24 0.00 0.00 5.36
2251 3636 4.147321 AGTGACAAAATTGCTCATGGTCT 58.853 39.130 0.00 0.00 0.00 3.85
2256 3641 6.265196 TGACAAAATTGCTCATGGTCTTTAGT 59.735 34.615 0.00 0.00 0.00 2.24
2257 3642 7.446931 TGACAAAATTGCTCATGGTCTTTAGTA 59.553 33.333 0.00 0.00 0.00 1.82
2258 3643 7.820648 ACAAAATTGCTCATGGTCTTTAGTAG 58.179 34.615 0.00 0.00 0.00 2.57
2259 3644 7.665559 ACAAAATTGCTCATGGTCTTTAGTAGA 59.334 33.333 0.00 0.00 0.00 2.59
2260 3645 7.856145 AAATTGCTCATGGTCTTTAGTAGAG 57.144 36.000 0.00 0.00 32.23 2.43
2261 3646 6.552445 ATTGCTCATGGTCTTTAGTAGAGT 57.448 37.500 0.00 0.00 32.23 3.24
2262 3647 7.661536 ATTGCTCATGGTCTTTAGTAGAGTA 57.338 36.000 0.00 0.00 32.23 2.59
2263 3648 6.701145 TGCTCATGGTCTTTAGTAGAGTAG 57.299 41.667 0.00 0.00 32.23 2.57
2278 3663 7.868906 AGTAGAGTAGTACATTGTCTTCTCC 57.131 40.000 2.52 5.79 31.55 3.71
2279 3664 7.403671 AGTAGAGTAGTACATTGTCTTCTCCA 58.596 38.462 2.52 4.46 31.55 3.86
2305 3690 7.538575 ACGATGGAAGGAAATTGTAGAAAATG 58.461 34.615 0.00 0.00 0.00 2.32
2344 3729 0.250424 CTGCTGTCATGGTGGTCACA 60.250 55.000 3.40 0.00 0.00 3.58
2371 3756 1.000274 GTGGGATTGCACAAACCTCAC 60.000 52.381 9.24 10.95 34.14 3.51
2436 3821 3.531538 GATTAAGGATGCCACGAAGACA 58.468 45.455 0.00 0.00 0.00 3.41
2444 3829 0.593128 GCCACGAAGACATTGCAACT 59.407 50.000 0.00 0.00 0.00 3.16
2495 3885 5.497474 AGGTAGTTTGCGGTGAATAGAAAT 58.503 37.500 0.00 0.00 0.00 2.17
2501 3891 3.342719 TGCGGTGAATAGAAATGAAGCA 58.657 40.909 0.00 0.00 0.00 3.91
2509 3899 7.064966 GGTGAATAGAAATGAAGCAAAATTGGG 59.935 37.037 0.00 0.00 0.00 4.12
2518 3908 1.070601 AGCAAAATTGGGCTTGGACAC 59.929 47.619 0.00 0.00 36.92 3.67
2529 3924 2.159296 GGCTTGGACACGAACACTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
2544 3939 7.225734 CGAACACTTTTTCCCCAATAAATTGTT 59.774 33.333 0.00 0.00 37.35 2.83
2574 3969 7.583230 ACTACTCTCAAGTTAGTACAAAGTCG 58.417 38.462 0.00 0.00 36.92 4.18
2575 3970 6.630444 ACTCTCAAGTTAGTACAAAGTCGA 57.370 37.500 0.00 0.00 28.74 4.20
2576 3971 7.035840 ACTCTCAAGTTAGTACAAAGTCGAA 57.964 36.000 0.00 0.00 28.74 3.71
2577 3972 7.486647 ACTCTCAAGTTAGTACAAAGTCGAAA 58.513 34.615 0.00 0.00 28.74 3.46
2578 3973 7.434602 ACTCTCAAGTTAGTACAAAGTCGAAAC 59.565 37.037 0.00 0.00 28.74 2.78
2579 3974 7.259882 TCTCAAGTTAGTACAAAGTCGAAACA 58.740 34.615 0.00 0.00 0.00 2.83
2580 3975 7.221452 TCTCAAGTTAGTACAAAGTCGAAACAC 59.779 37.037 0.00 0.00 0.00 3.32
2581 3976 7.037438 TCAAGTTAGTACAAAGTCGAAACACT 58.963 34.615 0.00 0.00 0.00 3.55
2582 3977 7.546667 TCAAGTTAGTACAAAGTCGAAACACTT 59.453 33.333 0.00 0.00 38.30 3.16
2583 3978 7.460751 AGTTAGTACAAAGTCGAAACACTTC 57.539 36.000 0.00 0.00 35.45 3.01
2584 3979 7.263496 AGTTAGTACAAAGTCGAAACACTTCT 58.737 34.615 0.00 0.00 35.45 2.85
2585 3980 7.763071 AGTTAGTACAAAGTCGAAACACTTCTT 59.237 33.333 0.00 0.00 35.45 2.52
2586 3981 6.980051 AGTACAAAGTCGAAACACTTCTTT 57.020 33.333 0.00 0.00 35.45 2.52
2587 3982 7.373778 AGTACAAAGTCGAAACACTTCTTTT 57.626 32.000 0.00 0.00 35.45 2.27
2588 3983 8.483307 AGTACAAAGTCGAAACACTTCTTTTA 57.517 30.769 0.00 0.00 35.45 1.52
2589 3984 8.601476 AGTACAAAGTCGAAACACTTCTTTTAG 58.399 33.333 0.00 0.00 35.45 1.85
2590 3985 7.605410 ACAAAGTCGAAACACTTCTTTTAGA 57.395 32.000 0.00 0.00 35.45 2.10
2591 3986 8.036273 ACAAAGTCGAAACACTTCTTTTAGAA 57.964 30.769 0.00 0.00 35.45 2.10
2592 3987 7.961283 ACAAAGTCGAAACACTTCTTTTAGAAC 59.039 33.333 0.00 0.00 35.45 3.01
2593 3988 6.270096 AGTCGAAACACTTCTTTTAGAACG 57.730 37.500 0.00 0.00 29.89 3.95
2594 3989 5.233689 AGTCGAAACACTTCTTTTAGAACGG 59.766 40.000 0.00 0.00 29.89 4.44
2595 3990 5.232838 GTCGAAACACTTCTTTTAGAACGGA 59.767 40.000 0.00 0.00 29.89 4.69
2596 3991 5.461078 TCGAAACACTTCTTTTAGAACGGAG 59.539 40.000 0.00 0.00 29.89 4.63
2597 3992 5.333111 CGAAACACTTCTTTTAGAACGGAGG 60.333 44.000 0.00 0.00 29.89 4.30
2598 3993 4.684484 ACACTTCTTTTAGAACGGAGGT 57.316 40.909 0.00 0.00 29.89 3.85
2599 3994 5.796424 ACACTTCTTTTAGAACGGAGGTA 57.204 39.130 0.00 0.00 29.89 3.08
2600 3995 6.165700 ACACTTCTTTTAGAACGGAGGTAA 57.834 37.500 0.00 0.00 29.89 2.85
2601 3996 5.987953 ACACTTCTTTTAGAACGGAGGTAAC 59.012 40.000 0.00 0.00 29.89 2.50
2602 3997 5.987347 CACTTCTTTTAGAACGGAGGTAACA 59.013 40.000 0.00 0.00 31.52 2.41
2603 3998 6.480981 CACTTCTTTTAGAACGGAGGTAACAA 59.519 38.462 0.00 0.00 31.52 2.83
2604 3999 6.704937 ACTTCTTTTAGAACGGAGGTAACAAG 59.295 38.462 0.00 0.00 31.52 3.16
2605 4000 4.992951 TCTTTTAGAACGGAGGTAACAAGC 59.007 41.667 0.00 0.00 41.41 4.01
2606 4001 4.612264 TTTAGAACGGAGGTAACAAGCT 57.388 40.909 0.00 0.00 41.41 3.74
2626 4021 4.020485 AGCTTCAAGTTGATACCGGTTACT 60.020 41.667 15.04 9.02 0.00 2.24
2630 4025 5.475719 TCAAGTTGATACCGGTTACTTCTG 58.524 41.667 15.04 8.09 0.00 3.02
2631 4026 3.858247 AGTTGATACCGGTTACTTCTGC 58.142 45.455 15.04 3.10 0.00 4.26
2633 4028 1.135527 TGATACCGGTTACTTCTGCCG 59.864 52.381 15.04 0.00 44.55 5.69
2641 4036 3.120786 CGGTTACTTCTGCCGTTTACAAG 60.121 47.826 0.00 0.00 40.53 3.16
2672 4067 2.036604 TCACGAACAGTATGCTCAACCA 59.963 45.455 0.00 0.00 42.53 3.67
2709 4104 6.321181 TCAAACCAAACAGCTCAAGAAGTTAT 59.679 34.615 0.00 0.00 0.00 1.89
2711 4106 6.319141 ACCAAACAGCTCAAGAAGTTATTC 57.681 37.500 0.00 0.00 35.52 1.75
2746 4142 2.226437 ACTGCTCTGTTATTTTGCCACG 59.774 45.455 0.00 0.00 0.00 4.94
2749 4145 2.225491 GCTCTGTTATTTTGCCACGACA 59.775 45.455 0.00 0.00 0.00 4.35
2776 4172 8.639428 CACGACTATAAAGAATATGTTCGGATG 58.361 37.037 0.00 0.00 39.38 3.51
2805 4204 2.119495 TGGGTTCTTCATCCTAGCCTC 58.881 52.381 0.00 0.00 0.00 4.70
2806 4205 1.069358 GGGTTCTTCATCCTAGCCTCG 59.931 57.143 0.00 0.00 0.00 4.63
2825 4224 2.677836 TCGAAGCACAAATCCACATAGC 59.322 45.455 0.00 0.00 0.00 2.97
2827 4226 3.119884 CGAAGCACAAATCCACATAGCAA 60.120 43.478 0.00 0.00 0.00 3.91
2832 4237 5.829391 AGCACAAATCCACATAGCAATATGA 59.171 36.000 2.41 0.00 0.00 2.15
2837 4242 7.342799 ACAAATCCACATAGCAATATGACCTTT 59.657 33.333 2.41 0.00 0.00 3.11
2838 4243 8.849168 CAAATCCACATAGCAATATGACCTTTA 58.151 33.333 2.41 0.00 0.00 1.85
2839 4244 8.995027 AATCCACATAGCAATATGACCTTTAA 57.005 30.769 2.41 0.00 0.00 1.52
2985 4391 2.420466 GAAAGTGCACGGCTTTGGGG 62.420 60.000 12.01 0.00 36.43 4.96
3017 4423 6.036470 GCTTAGGCTATGTTCAACCATTTTC 58.964 40.000 8.95 0.00 35.22 2.29
3052 4458 8.697846 TCAGTAATAAGATTGTAGAAACACGG 57.302 34.615 0.00 0.00 34.61 4.94
3059 4465 4.283722 AGATTGTAGAAACACGGGTCTCTT 59.716 41.667 0.00 0.00 34.61 2.85
3060 4466 3.655276 TGTAGAAACACGGGTCTCTTC 57.345 47.619 0.00 0.00 0.00 2.87
3069 4475 4.597004 ACACGGGTCTCTTCTGTATCTTA 58.403 43.478 0.00 0.00 0.00 2.10
3076 4482 7.222999 CGGGTCTCTTCTGTATCTTATTTGTTC 59.777 40.741 0.00 0.00 0.00 3.18
3083 4489 8.842358 TTCTGTATCTTATTTGTTCTCGGTTT 57.158 30.769 0.00 0.00 0.00 3.27
3088 4494 7.681939 ATCTTATTTGTTCTCGGTTTTGCTA 57.318 32.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.879462 GACGGCGATGACGGTGTC 60.879 66.667 16.62 0.00 39.02 3.67
1 2 4.771356 CGACGGCGATGACGGTGT 62.771 66.667 16.62 0.00 39.02 4.16
5 6 4.191485 GTTGCGACGGCGATGACG 62.191 66.667 18.90 14.44 44.10 4.35
6 7 3.849953 GGTTGCGACGGCGATGAC 61.850 66.667 18.90 9.19 44.10 3.06
13 14 3.708734 GACCAACGGTTGCGACGG 61.709 66.667 15.31 9.97 35.25 4.79
14 15 2.660552 AGACCAACGGTTGCGACG 60.661 61.111 15.31 4.48 35.25 5.12
15 16 1.557443 CTCAGACCAACGGTTGCGAC 61.557 60.000 15.31 9.00 35.25 5.19
16 17 1.300620 CTCAGACCAACGGTTGCGA 60.301 57.895 15.31 7.63 35.25 5.10
17 18 1.557443 GACTCAGACCAACGGTTGCG 61.557 60.000 15.31 10.87 35.25 4.85
18 19 1.557443 CGACTCAGACCAACGGTTGC 61.557 60.000 15.31 2.99 35.25 4.17
19 20 0.249322 ACGACTCAGACCAACGGTTG 60.249 55.000 13.86 13.86 35.25 3.77
20 21 0.031721 GACGACTCAGACCAACGGTT 59.968 55.000 0.00 0.00 35.25 4.44
21 22 1.105167 TGACGACTCAGACCAACGGT 61.105 55.000 0.00 0.00 39.44 4.83
22 23 0.663568 GTGACGACTCAGACCAACGG 60.664 60.000 0.00 0.00 0.00 4.44
23 24 0.663568 GGTGACGACTCAGACCAACG 60.664 60.000 0.00 0.00 0.00 4.10
24 25 3.196613 GGTGACGACTCAGACCAAC 57.803 57.895 0.00 0.00 0.00 3.77
42 43 3.576356 CTATTGGCACCTGCGGCG 61.576 66.667 0.51 0.51 43.26 6.46
43 44 3.892581 GCTATTGGCACCTGCGGC 61.893 66.667 0.00 0.00 43.26 6.53
52 53 1.228094 GCCCTCCTCTGCTATTGGC 60.228 63.158 0.00 0.00 42.22 4.52
53 54 0.842635 AAGCCCTCCTCTGCTATTGG 59.157 55.000 0.00 0.00 36.66 3.16
54 55 3.307339 GGATAAGCCCTCCTCTGCTATTG 60.307 52.174 0.00 0.00 36.66 1.90
55 56 2.909662 GGATAAGCCCTCCTCTGCTATT 59.090 50.000 0.00 0.00 36.66 1.73
56 57 2.113414 AGGATAAGCCCTCCTCTGCTAT 59.887 50.000 0.00 0.00 38.87 2.97
57 58 1.505538 AGGATAAGCCCTCCTCTGCTA 59.494 52.381 0.00 0.00 38.87 3.49
58 59 0.267356 AGGATAAGCCCTCCTCTGCT 59.733 55.000 0.00 0.00 38.87 4.24
59 60 0.396060 CAGGATAAGCCCTCCTCTGC 59.604 60.000 0.00 0.00 41.29 4.26
60 61 1.055040 CCAGGATAAGCCCTCCTCTG 58.945 60.000 0.00 0.00 41.29 3.35
61 62 0.944999 TCCAGGATAAGCCCTCCTCT 59.055 55.000 0.00 0.00 41.29 3.69
62 63 1.347062 CTCCAGGATAAGCCCTCCTC 58.653 60.000 0.00 0.00 41.29 3.71
63 64 0.766288 GCTCCAGGATAAGCCCTCCT 60.766 60.000 0.00 0.00 44.11 3.69
64 65 1.757949 GCTCCAGGATAAGCCCTCC 59.242 63.158 0.00 0.00 37.37 4.30
69 70 0.179006 CCCTTGGCTCCAGGATAAGC 60.179 60.000 0.00 0.00 37.80 3.09
70 71 1.216990 ACCCTTGGCTCCAGGATAAG 58.783 55.000 0.00 0.00 0.00 1.73
71 72 2.579624 TACCCTTGGCTCCAGGATAA 57.420 50.000 0.00 0.00 0.00 1.75
72 73 2.408565 CTTACCCTTGGCTCCAGGATA 58.591 52.381 0.00 0.00 0.00 2.59
73 74 1.216990 CTTACCCTTGGCTCCAGGAT 58.783 55.000 0.00 0.00 0.00 3.24
74 75 1.562672 GCTTACCCTTGGCTCCAGGA 61.563 60.000 0.00 0.00 0.00 3.86
75 76 1.077429 GCTTACCCTTGGCTCCAGG 60.077 63.158 0.00 0.00 0.00 4.45
76 77 0.038166 TTGCTTACCCTTGGCTCCAG 59.962 55.000 0.00 0.00 0.00 3.86
77 78 0.038166 CTTGCTTACCCTTGGCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
78 79 0.038310 ACTTGCTTACCCTTGGCTCC 59.962 55.000 0.00 0.00 0.00 4.70
79 80 2.781681 TACTTGCTTACCCTTGGCTC 57.218 50.000 0.00 0.00 0.00 4.70
80 81 3.518992 TTTACTTGCTTACCCTTGGCT 57.481 42.857 0.00 0.00 0.00 4.75
81 82 3.509967 ACATTTACTTGCTTACCCTTGGC 59.490 43.478 0.00 0.00 0.00 4.52
82 83 4.764823 TCACATTTACTTGCTTACCCTTGG 59.235 41.667 0.00 0.00 0.00 3.61
83 84 5.705441 TCTCACATTTACTTGCTTACCCTTG 59.295 40.000 0.00 0.00 0.00 3.61
84 85 5.876357 TCTCACATTTACTTGCTTACCCTT 58.124 37.500 0.00 0.00 0.00 3.95
85 86 5.491982 CTCTCACATTTACTTGCTTACCCT 58.508 41.667 0.00 0.00 0.00 4.34
86 87 4.636206 CCTCTCACATTTACTTGCTTACCC 59.364 45.833 0.00 0.00 0.00 3.69
87 88 4.636206 CCCTCTCACATTTACTTGCTTACC 59.364 45.833 0.00 0.00 0.00 2.85
88 89 4.095036 GCCCTCTCACATTTACTTGCTTAC 59.905 45.833 0.00 0.00 0.00 2.34
89 90 4.261801 GCCCTCTCACATTTACTTGCTTA 58.738 43.478 0.00 0.00 0.00 3.09
90 91 3.084786 GCCCTCTCACATTTACTTGCTT 58.915 45.455 0.00 0.00 0.00 3.91
91 92 2.716217 GCCCTCTCACATTTACTTGCT 58.284 47.619 0.00 0.00 0.00 3.91
92 93 1.398390 CGCCCTCTCACATTTACTTGC 59.602 52.381 0.00 0.00 0.00 4.01
93 94 2.009774 CCGCCCTCTCACATTTACTTG 58.990 52.381 0.00 0.00 0.00 3.16
94 95 1.065418 CCCGCCCTCTCACATTTACTT 60.065 52.381 0.00 0.00 0.00 2.24
95 96 0.541863 CCCGCCCTCTCACATTTACT 59.458 55.000 0.00 0.00 0.00 2.24
96 97 0.463833 CCCCGCCCTCTCACATTTAC 60.464 60.000 0.00 0.00 0.00 2.01
97 98 1.632018 CCCCCGCCCTCTCACATTTA 61.632 60.000 0.00 0.00 0.00 1.40
98 99 2.677228 CCCCGCCCTCTCACATTT 59.323 61.111 0.00 0.00 0.00 2.32
99 100 2.833151 TACCCCCGCCCTCTCACATT 62.833 60.000 0.00 0.00 0.00 2.71
100 101 2.621672 ATACCCCCGCCCTCTCACAT 62.622 60.000 0.00 0.00 0.00 3.21
101 102 1.951923 TATACCCCCGCCCTCTCACA 61.952 60.000 0.00 0.00 0.00 3.58
102 103 0.544595 ATATACCCCCGCCCTCTCAC 60.545 60.000 0.00 0.00 0.00 3.51
103 104 0.192566 AATATACCCCCGCCCTCTCA 59.807 55.000 0.00 0.00 0.00 3.27
104 105 1.278413 GAAATATACCCCCGCCCTCTC 59.722 57.143 0.00 0.00 0.00 3.20
105 106 1.359168 GAAATATACCCCCGCCCTCT 58.641 55.000 0.00 0.00 0.00 3.69
106 107 0.036671 CGAAATATACCCCCGCCCTC 60.037 60.000 0.00 0.00 0.00 4.30
107 108 2.063774 CGAAATATACCCCCGCCCT 58.936 57.895 0.00 0.00 0.00 5.19
108 109 1.673337 GCGAAATATACCCCCGCCC 60.673 63.158 0.00 0.00 39.97 6.13
109 110 2.030958 CGCGAAATATACCCCCGCC 61.031 63.158 0.00 0.00 42.50 6.13
110 111 2.674084 GCGCGAAATATACCCCCGC 61.674 63.158 12.10 0.00 42.11 6.13
111 112 2.030958 GGCGCGAAATATACCCCCG 61.031 63.158 12.10 0.00 0.00 5.73
112 113 0.322187 ATGGCGCGAAATATACCCCC 60.322 55.000 12.10 0.00 0.00 5.40
113 114 1.084289 GATGGCGCGAAATATACCCC 58.916 55.000 12.10 0.00 0.00 4.95
114 115 1.084289 GGATGGCGCGAAATATACCC 58.916 55.000 12.10 0.00 0.00 3.69
115 116 1.084289 GGGATGGCGCGAAATATACC 58.916 55.000 12.10 3.84 0.00 2.73
128 129 3.866582 GAGGTGGAGGCGGGATGG 61.867 72.222 0.00 0.00 0.00 3.51
129 130 2.765807 AGAGGTGGAGGCGGGATG 60.766 66.667 0.00 0.00 0.00 3.51
130 131 2.444895 GAGAGGTGGAGGCGGGAT 60.445 66.667 0.00 0.00 0.00 3.85
131 132 4.779733 GGAGAGGTGGAGGCGGGA 62.780 72.222 0.00 0.00 0.00 5.14
133 134 3.465403 CTGGAGAGGTGGAGGCGG 61.465 72.222 0.00 0.00 0.00 6.13
134 135 4.154347 GCTGGAGAGGTGGAGGCG 62.154 72.222 0.00 0.00 0.00 5.52
135 136 3.791586 GGCTGGAGAGGTGGAGGC 61.792 72.222 0.00 0.00 0.00 4.70
136 137 1.692042 ATGGCTGGAGAGGTGGAGG 60.692 63.158 0.00 0.00 0.00 4.30
137 138 0.690411 AGATGGCTGGAGAGGTGGAG 60.690 60.000 0.00 0.00 0.00 3.86
138 139 0.689080 GAGATGGCTGGAGAGGTGGA 60.689 60.000 0.00 0.00 0.00 4.02
139 140 1.828768 GAGATGGCTGGAGAGGTGG 59.171 63.158 0.00 0.00 0.00 4.61
140 141 1.440893 CGAGATGGCTGGAGAGGTG 59.559 63.158 0.00 0.00 0.00 4.00
141 142 1.760086 CCGAGATGGCTGGAGAGGT 60.760 63.158 0.00 0.00 0.00 3.85
142 143 1.333636 AACCGAGATGGCTGGAGAGG 61.334 60.000 0.00 0.00 43.94 3.69
143 144 0.539051 AAACCGAGATGGCTGGAGAG 59.461 55.000 0.00 0.00 43.94 3.20
144 145 0.250234 CAAACCGAGATGGCTGGAGA 59.750 55.000 0.00 0.00 43.94 3.71
145 146 0.250234 TCAAACCGAGATGGCTGGAG 59.750 55.000 0.00 0.00 43.94 3.86
146 147 0.690192 TTCAAACCGAGATGGCTGGA 59.310 50.000 0.00 0.00 43.94 3.86
147 148 1.672881 GATTCAAACCGAGATGGCTGG 59.327 52.381 0.00 0.00 43.94 4.85
148 149 1.672881 GGATTCAAACCGAGATGGCTG 59.327 52.381 0.00 0.00 43.94 4.85
149 150 1.561542 AGGATTCAAACCGAGATGGCT 59.438 47.619 0.00 0.00 43.94 4.75
150 151 1.943340 GAGGATTCAAACCGAGATGGC 59.057 52.381 0.00 0.00 43.94 4.40
151 152 2.565841 GGAGGATTCAAACCGAGATGG 58.434 52.381 0.00 0.00 46.41 3.51
152 153 2.171448 AGGGAGGATTCAAACCGAGATG 59.829 50.000 0.00 0.00 0.00 2.90
153 154 2.171448 CAGGGAGGATTCAAACCGAGAT 59.829 50.000 0.00 0.00 0.00 2.75
154 155 1.555075 CAGGGAGGATTCAAACCGAGA 59.445 52.381 0.00 0.00 0.00 4.04
155 156 2.014068 GCAGGGAGGATTCAAACCGAG 61.014 57.143 0.00 0.00 0.00 4.63
156 157 0.035439 GCAGGGAGGATTCAAACCGA 60.035 55.000 0.00 0.00 0.00 4.69
157 158 0.322456 TGCAGGGAGGATTCAAACCG 60.322 55.000 0.00 0.00 0.00 4.44
158 159 1.177401 GTGCAGGGAGGATTCAAACC 58.823 55.000 0.00 0.00 0.00 3.27
159 160 1.177401 GGTGCAGGGAGGATTCAAAC 58.823 55.000 0.00 0.00 0.00 2.93
160 161 0.776810 TGGTGCAGGGAGGATTCAAA 59.223 50.000 0.00 0.00 0.00 2.69
161 162 0.329261 CTGGTGCAGGGAGGATTCAA 59.671 55.000 0.00 0.00 0.00 2.69
162 163 1.993653 CTGGTGCAGGGAGGATTCA 59.006 57.895 0.00 0.00 0.00 2.57
163 164 1.452833 GCTGGTGCAGGGAGGATTC 60.453 63.158 0.00 0.00 39.41 2.52
164 165 1.504275 AAGCTGGTGCAGGGAGGATT 61.504 55.000 0.00 0.00 42.74 3.01
165 166 1.504275 AAAGCTGGTGCAGGGAGGAT 61.504 55.000 0.00 0.00 42.74 3.24
166 167 1.719063 AAAAGCTGGTGCAGGGAGGA 61.719 55.000 0.00 0.00 42.74 3.71
167 168 1.228675 AAAAGCTGGTGCAGGGAGG 60.229 57.895 0.00 0.00 42.74 4.30
168 169 1.962144 CAAAAGCTGGTGCAGGGAG 59.038 57.895 0.00 0.00 42.74 4.30
169 170 2.202395 GCAAAAGCTGGTGCAGGGA 61.202 57.895 15.22 0.00 42.74 4.20
170 171 2.341176 GCAAAAGCTGGTGCAGGG 59.659 61.111 15.22 0.00 42.74 4.45
171 172 2.049802 CGCAAAAGCTGGTGCAGG 60.050 61.111 18.90 3.30 40.94 4.85
172 173 2.732094 GCGCAAAAGCTGGTGCAG 60.732 61.111 18.90 13.24 40.94 4.41
173 174 4.283403 GGCGCAAAAGCTGGTGCA 62.283 61.111 18.90 0.00 42.10 4.57
175 176 4.705519 CGGGCGCAAAAGCTGGTG 62.706 66.667 10.83 0.00 37.29 4.17
176 177 4.947147 TCGGGCGCAAAAGCTGGT 62.947 61.111 10.83 0.00 37.29 4.00
177 178 4.107051 CTCGGGCGCAAAAGCTGG 62.107 66.667 10.83 0.00 37.29 4.85
178 179 1.573829 TAACTCGGGCGCAAAAGCTG 61.574 55.000 10.83 0.00 37.29 4.24
179 180 1.298859 CTAACTCGGGCGCAAAAGCT 61.299 55.000 10.83 0.00 37.29 3.74
180 181 1.134694 CTAACTCGGGCGCAAAAGC 59.865 57.895 10.83 0.00 0.00 3.51
181 182 1.134694 GCTAACTCGGGCGCAAAAG 59.865 57.895 10.83 5.05 0.00 2.27
182 183 2.329614 GGCTAACTCGGGCGCAAAA 61.330 57.895 10.83 0.00 0.00 2.44
183 184 2.744709 GGCTAACTCGGGCGCAAA 60.745 61.111 10.83 0.00 0.00 3.68
184 185 3.702048 AGGCTAACTCGGGCGCAA 61.702 61.111 10.83 0.00 0.00 4.85
185 186 4.451150 CAGGCTAACTCGGGCGCA 62.451 66.667 10.83 0.00 0.00 6.09
187 188 3.310860 AACCAGGCTAACTCGGGCG 62.311 63.158 0.00 0.00 0.00 6.13
188 189 1.745489 CAACCAGGCTAACTCGGGC 60.745 63.158 0.00 0.00 0.00 6.13
189 190 1.745489 GCAACCAGGCTAACTCGGG 60.745 63.158 0.00 0.00 0.00 5.14
190 191 1.745489 GGCAACCAGGCTAACTCGG 60.745 63.158 0.00 0.00 40.24 4.63
191 192 3.890674 GGCAACCAGGCTAACTCG 58.109 61.111 0.00 0.00 40.24 4.18
198 199 3.376918 GCTTCCAGGCAACCAGGC 61.377 66.667 0.00 0.00 44.61 4.85
199 200 1.975407 CAGCTTCCAGGCAACCAGG 60.975 63.158 0.00 0.00 34.17 4.45
200 201 2.633509 GCAGCTTCCAGGCAACCAG 61.634 63.158 0.00 0.00 34.17 4.00
201 202 2.598394 GCAGCTTCCAGGCAACCA 60.598 61.111 0.00 0.00 34.17 3.67
202 203 3.376918 GGCAGCTTCCAGGCAACC 61.377 66.667 0.00 0.00 34.17 3.77
203 204 3.741476 CGGCAGCTTCCAGGCAAC 61.741 66.667 2.54 0.00 34.17 4.17
207 208 2.747855 GAACCGGCAGCTTCCAGG 60.748 66.667 0.00 7.43 0.00 4.45
208 209 1.580845 CTTGAACCGGCAGCTTCCAG 61.581 60.000 0.00 0.00 0.00 3.86
209 210 1.600636 CTTGAACCGGCAGCTTCCA 60.601 57.895 0.00 0.00 0.00 3.53
210 211 2.982744 GCTTGAACCGGCAGCTTCC 61.983 63.158 0.00 0.00 0.00 3.46
211 212 2.563427 GCTTGAACCGGCAGCTTC 59.437 61.111 0.00 0.00 0.00 3.86
212 213 3.357079 CGCTTGAACCGGCAGCTT 61.357 61.111 0.00 0.00 0.00 3.74
213 214 4.626081 ACGCTTGAACCGGCAGCT 62.626 61.111 0.00 0.00 0.00 4.24
214 215 3.595108 GAACGCTTGAACCGGCAGC 62.595 63.158 0.00 3.04 0.00 5.25
215 216 2.556287 GAACGCTTGAACCGGCAG 59.444 61.111 0.00 0.00 0.00 4.85
216 217 2.102109 TAGGAACGCTTGAACCGGCA 62.102 55.000 0.00 0.00 0.00 5.69
217 218 1.359459 CTAGGAACGCTTGAACCGGC 61.359 60.000 0.00 0.00 0.00 6.13
218 219 0.037605 ACTAGGAACGCTTGAACCGG 60.038 55.000 0.00 0.00 0.00 5.28
219 220 1.068474 CACTAGGAACGCTTGAACCG 58.932 55.000 0.00 0.00 0.00 4.44
220 221 2.338500 CTCACTAGGAACGCTTGAACC 58.662 52.381 0.00 0.00 0.00 3.62
221 222 1.727335 GCTCACTAGGAACGCTTGAAC 59.273 52.381 0.00 0.00 0.00 3.18
222 223 1.337823 GGCTCACTAGGAACGCTTGAA 60.338 52.381 0.00 0.00 0.00 2.69
223 224 0.246635 GGCTCACTAGGAACGCTTGA 59.753 55.000 0.00 0.00 0.00 3.02
224 225 0.037326 TGGCTCACTAGGAACGCTTG 60.037 55.000 0.00 0.00 0.00 4.01
225 226 0.685097 TTGGCTCACTAGGAACGCTT 59.315 50.000 0.00 0.00 0.00 4.68
226 227 0.247736 CTTGGCTCACTAGGAACGCT 59.752 55.000 0.00 0.00 0.00 5.07
227 228 1.362406 GCTTGGCTCACTAGGAACGC 61.362 60.000 0.00 0.00 0.00 4.84
228 229 0.247736 AGCTTGGCTCACTAGGAACG 59.752 55.000 0.00 0.00 30.62 3.95
244 245 4.502259 CGATACTTAAAGCATCCCAGAGCT 60.502 45.833 0.00 0.00 44.31 4.09
250 251 2.221055 CGCACGATACTTAAAGCATCCC 59.779 50.000 0.00 0.00 0.00 3.85
253 254 5.107989 CGTATTCGCACGATACTTAAAGCAT 60.108 40.000 0.00 0.00 44.69 3.79
266 267 0.638746 GGTTGACTCGTATTCGCACG 59.361 55.000 0.00 0.00 43.28 5.34
268 269 2.751259 AGTAGGTTGACTCGTATTCGCA 59.249 45.455 0.00 0.00 36.96 5.10
271 272 5.736358 CGTACAAGTAGGTTGACTCGTATTC 59.264 44.000 0.00 0.00 38.60 1.75
275 276 2.351157 GCGTACAAGTAGGTTGACTCGT 60.351 50.000 0.00 0.00 38.60 4.18
276 277 2.248487 GCGTACAAGTAGGTTGACTCG 58.752 52.381 0.00 0.00 38.60 4.18
278 279 3.387397 GTTGCGTACAAGTAGGTTGACT 58.613 45.455 0.00 0.00 38.60 3.41
283 284 1.413445 TGTGGTTGCGTACAAGTAGGT 59.587 47.619 0.00 0.00 36.16 3.08
292 294 2.968156 GGCACGTGTGGTTGCGTA 60.968 61.111 18.38 0.00 39.48 4.42
295 297 0.529555 AAAATGGCACGTGTGGTTGC 60.530 50.000 18.38 0.41 0.00 4.17
302 304 1.921887 GCATGATGAAAATGGCACGTG 59.078 47.619 12.28 12.28 0.00 4.49
306 308 2.097954 GTCGAGCATGATGAAAATGGCA 59.902 45.455 0.00 0.00 0.00 4.92
307 309 2.542411 GGTCGAGCATGATGAAAATGGC 60.542 50.000 10.30 0.00 0.00 4.40
319 321 2.579201 CCAACGAGGGTCGAGCAT 59.421 61.111 17.59 9.77 43.74 3.79
331 333 3.414272 GCTGCATAGAGCCCAACG 58.586 61.111 0.00 0.00 44.83 4.10
350 352 2.070783 TCGTTAAGGATGCGTTTGGTC 58.929 47.619 0.00 0.00 0.00 4.02
355 357 0.441145 GCGTTCGTTAAGGATGCGTT 59.559 50.000 17.58 0.00 0.00 4.84
367 369 3.187700 GTCAGATAATCAAGGCGTTCGT 58.812 45.455 0.00 0.00 0.00 3.85
369 371 4.024556 CCATGTCAGATAATCAAGGCGTTC 60.025 45.833 0.00 0.00 0.00 3.95
379 381 7.701539 TGTGTTTTAAGCCATGTCAGATAAT 57.298 32.000 0.00 0.00 0.00 1.28
385 387 5.781210 TTGATGTGTTTTAAGCCATGTCA 57.219 34.783 0.00 0.00 0.00 3.58
417 419 0.604073 TGCCTGTCGTTCGTTATGGA 59.396 50.000 0.00 0.00 0.00 3.41
424 426 3.175240 CGCTCTGCCTGTCGTTCG 61.175 66.667 0.00 0.00 0.00 3.95
435 437 0.108615 ATTCCGGTCTGAACGCTCTG 60.109 55.000 10.11 0.00 0.00 3.35
440 442 5.600908 TTTTTAGAATTCCGGTCTGAACG 57.399 39.130 8.40 8.40 0.00 3.95
451 453 6.642683 TCTGACGTCGGATTTTTAGAATTC 57.357 37.500 23.11 0.00 0.00 2.17
465 467 3.485633 TCTCGTTGTAAATCTGACGTCG 58.514 45.455 11.62 6.07 36.89 5.12
482 484 0.108138 GTCTCCCCCACAACATCTCG 60.108 60.000 0.00 0.00 0.00 4.04
489 491 0.105913 GGGTTTTGTCTCCCCCACAA 60.106 55.000 0.00 0.00 37.89 3.33
495 497 1.606601 GGCCTGGGTTTTGTCTCCC 60.607 63.158 0.00 0.00 43.67 4.30
503 505 3.647771 GTCCCTCGGCCTGGGTTT 61.648 66.667 24.45 0.00 44.84 3.27
508 510 2.840102 CCTAGGTCCCTCGGCCTG 60.840 72.222 0.00 0.00 36.38 4.85
523 525 1.785353 TTTTCCTAACGCCCTGGCCT 61.785 55.000 3.32 0.00 37.98 5.19
562 564 2.491298 TGTCAAACAGTGCACAACATGT 59.509 40.909 21.04 11.76 0.00 3.21
587 589 3.193263 CAGACTTGCTATAGTGCCACTG 58.807 50.000 7.83 3.37 0.00 3.66
592 594 1.811941 GCCCCAGACTTGCTATAGTGC 60.812 57.143 0.84 0.00 0.00 4.40
634 636 1.962412 TTTGCAATTTACTCGCGCAG 58.038 45.000 8.75 6.77 33.48 5.18
637 639 2.407026 GGGTTTTTGCAATTTACTCGCG 59.593 45.455 0.00 0.00 0.00 5.87
656 658 1.949525 CTTTGACTGGATTATGGCGGG 59.050 52.381 0.00 0.00 0.00 6.13
659 661 9.683069 CATTTATAACTTTGACTGGATTATGGC 57.317 33.333 0.00 0.00 0.00 4.40
698 700 4.128643 CAAAATGCATGTTTTCTGGTGGT 58.871 39.130 0.00 0.00 0.00 4.16
749 2061 4.019321 AGCCAAGCCAGAGTAGATTACAAA 60.019 41.667 0.00 0.00 0.00 2.83
752 2064 3.493524 GGAGCCAAGCCAGAGTAGATTAC 60.494 52.174 0.00 0.00 0.00 1.89
753 2065 2.700897 GGAGCCAAGCCAGAGTAGATTA 59.299 50.000 0.00 0.00 0.00 1.75
755 2067 1.127343 GGAGCCAAGCCAGAGTAGAT 58.873 55.000 0.00 0.00 0.00 1.98
782 2094 2.182842 GGATGGCCGTGCATCTCAC 61.183 63.158 12.26 0.00 42.23 3.51
783 2095 2.190313 GGATGGCCGTGCATCTCA 59.810 61.111 12.26 0.00 0.00 3.27
784 2096 1.890979 CAGGATGGCCGTGCATCTC 60.891 63.158 19.68 0.78 39.96 2.75
785 2097 2.191375 CAGGATGGCCGTGCATCT 59.809 61.111 19.68 0.00 39.96 2.90
786 2098 2.124570 ACAGGATGGCCGTGCATC 60.125 61.111 19.68 5.71 43.62 3.91
787 2099 2.124570 GACAGGATGGCCGTGCAT 60.125 61.111 19.68 6.07 39.24 3.96
853 2201 3.677047 CGTGTACGTGTCGTTTGTG 57.323 52.632 0.00 0.00 41.54 3.33
897 2245 2.227388 CCTCGCTGCAGATTCAAGTTTT 59.773 45.455 20.43 0.00 0.00 2.43
898 2246 1.808945 CCTCGCTGCAGATTCAAGTTT 59.191 47.619 20.43 0.00 0.00 2.66
922 2270 1.069924 CAGCAGCTCTCTTCGTCGTG 61.070 60.000 0.00 0.00 0.00 4.35
924 2272 2.157701 GCAGCAGCTCTCTTCGTCG 61.158 63.158 0.00 0.00 37.91 5.12
939 2287 3.842126 CGCCGTCGACATGTGCAG 61.842 66.667 17.16 5.36 38.10 4.41
940 2288 4.350441 TCGCCGTCGACATGTGCA 62.350 61.111 17.16 0.84 40.21 4.57
957 2305 0.536687 CGGATCCTGCATTCCAGCAT 60.537 55.000 10.75 0.00 44.68 3.79
958 2306 1.153107 CGGATCCTGCATTCCAGCA 60.153 57.895 10.75 0.00 43.35 4.41
959 2307 1.895707 CCGGATCCTGCATTCCAGC 60.896 63.158 10.75 0.00 40.36 4.85
960 2308 0.107017 AACCGGATCCTGCATTCCAG 60.107 55.000 9.46 2.73 41.41 3.86
961 2309 0.107214 GAACCGGATCCTGCATTCCA 60.107 55.000 9.46 0.00 31.99 3.53
962 2310 0.181350 AGAACCGGATCCTGCATTCC 59.819 55.000 9.46 0.00 0.00 3.01
963 2311 1.303309 CAGAACCGGATCCTGCATTC 58.697 55.000 9.46 7.96 0.00 2.67
964 2312 3.483954 CAGAACCGGATCCTGCATT 57.516 52.632 9.46 0.00 0.00 3.56
1051 2399 2.210116 GCGAGTTGACTTGTTCCTTGA 58.790 47.619 0.00 0.00 0.00 3.02
1059 2407 0.710567 CTACGCTGCGAGTTGACTTG 59.289 55.000 30.47 1.06 0.00 3.16
1081 2429 7.358352 CGATTTGTTTTGTATGTTTTCCTCTGC 60.358 37.037 0.00 0.00 0.00 4.26
1094 2442 3.786576 CGTGTTGTGCGATTTGTTTTGTA 59.213 39.130 0.00 0.00 0.00 2.41
1129 2477 0.405585 TTCTCCAAGAGGCAAAGGGG 59.594 55.000 0.00 0.00 33.74 4.79
1162 2510 1.345415 GGGGATATAAAGGGCGTCGAA 59.655 52.381 0.00 0.00 0.00 3.71
1163 2511 0.971386 GGGGATATAAAGGGCGTCGA 59.029 55.000 0.00 0.00 0.00 4.20
1168 2516 0.608308 GCCACGGGGATATAAAGGGC 60.608 60.000 8.67 0.00 35.59 5.19
1232 2600 1.287730 GCGGAGATCGGACATGATGC 61.288 60.000 0.00 0.00 39.69 3.91
1513 2881 3.483869 GGCGAGGCCCTTGAGGAT 61.484 66.667 0.80 0.00 44.06 3.24
1601 2969 2.217038 TCCTTGGCGAGGCACTTCT 61.217 57.895 16.55 0.00 45.87 2.85
1602 2970 2.035442 GTCCTTGGCGAGGCACTTC 61.035 63.158 16.55 0.58 45.87 3.01
1656 3024 2.732619 GGAGACCATGACCCCGGAC 61.733 68.421 0.73 0.00 0.00 4.79
1659 3027 2.758327 TCGGAGACCATGACCCCG 60.758 66.667 0.00 0.00 41.36 5.73
1755 3123 4.748679 ACCGACGACACGTAGCGC 62.749 66.667 0.00 0.00 41.37 5.92
1953 3333 2.671177 CGCGAAGTCCACCAGCTTG 61.671 63.158 0.00 0.00 0.00 4.01
2102 3485 3.340814 ACTGTATCAGCTCCCAAAGTG 57.659 47.619 0.00 0.00 34.37 3.16
2140 3523 5.164100 CGAAAAGAACAATAAACAATGGCCG 60.164 40.000 0.00 0.00 0.00 6.13
2145 3528 8.419076 ACAAAGCGAAAAGAACAATAAACAAT 57.581 26.923 0.00 0.00 0.00 2.71
2206 3589 9.442047 CACTCTACTTTACATCCTTCTTTTGAT 57.558 33.333 0.00 0.00 0.00 2.57
2256 3641 7.148289 CGTTGGAGAAGACAATGTACTACTCTA 60.148 40.741 0.00 0.00 31.79 2.43
2257 3642 6.349445 CGTTGGAGAAGACAATGTACTACTCT 60.349 42.308 0.00 0.00 31.79 3.24
2258 3643 5.800941 CGTTGGAGAAGACAATGTACTACTC 59.199 44.000 0.00 0.00 31.79 2.59
2259 3644 5.475909 TCGTTGGAGAAGACAATGTACTACT 59.524 40.000 0.00 0.00 36.48 2.57
2260 3645 5.706916 TCGTTGGAGAAGACAATGTACTAC 58.293 41.667 0.00 0.00 36.48 2.73
2261 3646 5.970317 TCGTTGGAGAAGACAATGTACTA 57.030 39.130 0.00 0.00 36.48 1.82
2262 3647 4.866508 TCGTTGGAGAAGACAATGTACT 57.133 40.909 0.00 0.00 36.48 2.73
2263 3648 4.330074 CCATCGTTGGAGAAGACAATGTAC 59.670 45.833 6.68 0.00 46.92 2.90
2278 3663 6.494893 TTCTACAATTTCCTTCCATCGTTG 57.505 37.500 0.00 0.00 0.00 4.10
2279 3664 7.519032 TTTTCTACAATTTCCTTCCATCGTT 57.481 32.000 0.00 0.00 0.00 3.85
2305 3690 7.650903 ACAGCAGAATCAATTCTTGTTTTCTTC 59.349 33.333 2.47 3.06 44.28 2.87
2344 3729 1.626686 TGTGCAATCCCACCGATTTT 58.373 45.000 0.00 0.00 39.28 1.82
2410 3795 4.974645 TCGTGGCATCCTTAATCCTAAT 57.025 40.909 0.00 0.00 0.00 1.73
2436 3821 5.928264 GCAGAACCAATTCTTTAGTTGCAAT 59.072 36.000 0.59 0.00 42.91 3.56
2444 3829 7.851228 TCTCTAGATGCAGAACCAATTCTTTA 58.149 34.615 0.00 0.00 42.91 1.85
2495 3885 2.045524 TCCAAGCCCAATTTTGCTTCA 58.954 42.857 7.98 0.00 45.59 3.02
2501 3891 1.698506 TCGTGTCCAAGCCCAATTTT 58.301 45.000 0.00 0.00 0.00 1.82
2509 3899 2.844122 AAAAGTGTTCGTGTCCAAGC 57.156 45.000 0.00 0.00 0.00 4.01
2518 3908 6.704050 ACAATTTATTGGGGAAAAAGTGTTCG 59.296 34.615 7.33 0.00 37.96 3.95
2555 3950 7.222224 AGTGTTTCGACTTTGTACTAACTTGAG 59.778 37.037 0.00 0.00 0.00 3.02
2556 3951 7.037438 AGTGTTTCGACTTTGTACTAACTTGA 58.963 34.615 0.00 0.00 0.00 3.02
2557 3952 7.230466 AGTGTTTCGACTTTGTACTAACTTG 57.770 36.000 0.00 0.00 0.00 3.16
2559 3954 7.263496 AGAAGTGTTTCGACTTTGTACTAACT 58.737 34.615 0.00 0.00 36.27 2.24
2560 3955 7.460751 AGAAGTGTTTCGACTTTGTACTAAC 57.539 36.000 0.00 0.00 36.27 2.34
2561 3956 8.483307 AAAGAAGTGTTTCGACTTTGTACTAA 57.517 30.769 0.00 0.00 36.27 2.24
2562 3957 8.483307 AAAAGAAGTGTTTCGACTTTGTACTA 57.517 30.769 0.00 0.00 36.27 1.82
2563 3958 6.980051 AAAGAAGTGTTTCGACTTTGTACT 57.020 33.333 0.00 0.00 36.27 2.73
2564 3959 8.598075 TCTAAAAGAAGTGTTTCGACTTTGTAC 58.402 33.333 0.00 0.00 36.27 2.90
2565 3960 8.706492 TCTAAAAGAAGTGTTTCGACTTTGTA 57.294 30.769 0.00 0.00 36.27 2.41
2566 3961 7.605410 TCTAAAAGAAGTGTTTCGACTTTGT 57.395 32.000 0.00 0.00 36.27 2.83
2567 3962 7.162062 CGTTCTAAAAGAAGTGTTTCGACTTTG 59.838 37.037 0.00 0.00 36.27 2.77
2568 3963 7.178074 CGTTCTAAAAGAAGTGTTTCGACTTT 58.822 34.615 0.00 0.00 36.27 2.66
2569 3964 6.238022 CCGTTCTAAAAGAAGTGTTTCGACTT 60.238 38.462 0.00 0.00 38.94 3.01
2570 3965 5.233689 CCGTTCTAAAAGAAGTGTTTCGACT 59.766 40.000 0.00 0.00 34.42 4.18
2571 3966 5.232838 TCCGTTCTAAAAGAAGTGTTTCGAC 59.767 40.000 0.00 0.00 34.42 4.20
2572 3967 5.350633 TCCGTTCTAAAAGAAGTGTTTCGA 58.649 37.500 0.00 0.00 34.42 3.71
2573 3968 5.333111 CCTCCGTTCTAAAAGAAGTGTTTCG 60.333 44.000 0.00 0.00 34.42 3.46
2574 3969 5.526479 ACCTCCGTTCTAAAAGAAGTGTTTC 59.474 40.000 0.00 0.00 34.42 2.78
2575 3970 5.434408 ACCTCCGTTCTAAAAGAAGTGTTT 58.566 37.500 0.00 0.00 34.42 2.83
2576 3971 5.032327 ACCTCCGTTCTAAAAGAAGTGTT 57.968 39.130 0.00 0.00 34.42 3.32
2577 3972 4.684484 ACCTCCGTTCTAAAAGAAGTGT 57.316 40.909 0.00 0.00 34.42 3.55
2578 3973 5.987347 TGTTACCTCCGTTCTAAAAGAAGTG 59.013 40.000 0.00 0.00 34.42 3.16
2579 3974 6.165700 TGTTACCTCCGTTCTAAAAGAAGT 57.834 37.500 0.00 0.00 34.42 3.01
2580 3975 6.347483 GCTTGTTACCTCCGTTCTAAAAGAAG 60.347 42.308 0.00 0.00 34.42 2.85
2581 3976 5.467735 GCTTGTTACCTCCGTTCTAAAAGAA 59.532 40.000 0.00 0.00 0.00 2.52
2582 3977 4.992951 GCTTGTTACCTCCGTTCTAAAAGA 59.007 41.667 0.00 0.00 0.00 2.52
2583 3978 4.995487 AGCTTGTTACCTCCGTTCTAAAAG 59.005 41.667 0.00 0.00 0.00 2.27
2584 3979 4.964593 AGCTTGTTACCTCCGTTCTAAAA 58.035 39.130 0.00 0.00 0.00 1.52
2585 3980 4.612264 AGCTTGTTACCTCCGTTCTAAA 57.388 40.909 0.00 0.00 0.00 1.85
2586 3981 4.039488 TGAAGCTTGTTACCTCCGTTCTAA 59.961 41.667 2.10 0.00 0.00 2.10
2587 3982 3.575256 TGAAGCTTGTTACCTCCGTTCTA 59.425 43.478 2.10 0.00 0.00 2.10
2588 3983 2.367567 TGAAGCTTGTTACCTCCGTTCT 59.632 45.455 2.10 0.00 0.00 3.01
2589 3984 2.762745 TGAAGCTTGTTACCTCCGTTC 58.237 47.619 2.10 0.00 0.00 3.95
2590 3985 2.922740 TGAAGCTTGTTACCTCCGTT 57.077 45.000 2.10 0.00 0.00 4.44
2591 3986 2.104281 ACTTGAAGCTTGTTACCTCCGT 59.896 45.455 2.10 0.00 0.00 4.69
2592 3987 2.767505 ACTTGAAGCTTGTTACCTCCG 58.232 47.619 2.10 0.00 0.00 4.63
2593 3988 4.134563 TCAACTTGAAGCTTGTTACCTCC 58.865 43.478 2.10 0.00 0.00 4.30
2594 3989 5.948992 ATCAACTTGAAGCTTGTTACCTC 57.051 39.130 2.10 0.00 0.00 3.85
2595 3990 5.705905 GGTATCAACTTGAAGCTTGTTACCT 59.294 40.000 22.96 0.00 38.55 3.08
2596 3991 5.390567 CGGTATCAACTTGAAGCTTGTTACC 60.391 44.000 21.79 21.79 38.38 2.85
2597 3992 5.390567 CCGGTATCAACTTGAAGCTTGTTAC 60.391 44.000 2.10 13.89 0.00 2.50
2598 3993 4.693566 CCGGTATCAACTTGAAGCTTGTTA 59.306 41.667 2.10 0.00 0.00 2.41
2599 3994 3.502211 CCGGTATCAACTTGAAGCTTGTT 59.498 43.478 2.10 0.00 0.00 2.83
2600 3995 3.074412 CCGGTATCAACTTGAAGCTTGT 58.926 45.455 2.10 0.00 0.00 3.16
2601 3996 3.074412 ACCGGTATCAACTTGAAGCTTG 58.926 45.455 4.49 0.00 0.00 4.01
2602 3997 3.418684 ACCGGTATCAACTTGAAGCTT 57.581 42.857 4.49 0.00 0.00 3.74
2603 3998 3.418684 AACCGGTATCAACTTGAAGCT 57.581 42.857 8.00 0.00 0.00 3.74
2604 3999 4.251268 AGTAACCGGTATCAACTTGAAGC 58.749 43.478 8.00 0.00 0.00 3.86
2605 4000 6.090898 CAGAAGTAACCGGTATCAACTTGAAG 59.909 42.308 22.04 11.83 30.83 3.02
2606 4001 5.929992 CAGAAGTAACCGGTATCAACTTGAA 59.070 40.000 22.04 0.00 30.83 2.69
2626 4021 3.496884 GTGTGATCTTGTAAACGGCAGAA 59.503 43.478 0.00 0.00 0.00 3.02
2630 4025 2.806244 ACAGTGTGATCTTGTAAACGGC 59.194 45.455 0.00 0.00 0.00 5.68
2631 4026 4.055360 TGACAGTGTGATCTTGTAAACGG 58.945 43.478 0.00 0.00 0.00 4.44
2633 4028 4.743151 TCGTGACAGTGTGATCTTGTAAAC 59.257 41.667 0.00 0.00 0.00 2.01
2694 4089 2.352960 GGGCGAATAACTTCTTGAGCTG 59.647 50.000 0.00 0.00 0.00 4.24
2709 4104 1.234821 CAGTGTAGCAAAAGGGCGAA 58.765 50.000 0.00 0.00 39.27 4.70
2711 4106 1.210155 GCAGTGTAGCAAAAGGGCG 59.790 57.895 0.00 0.00 39.27 6.13
2746 4142 8.469902 CGAACATATTCTTTATAGTCGTGTGTC 58.530 37.037 0.00 0.00 32.12 3.67
2749 4145 7.709947 TCCGAACATATTCTTTATAGTCGTGT 58.290 34.615 0.00 0.00 32.12 4.49
2776 4172 1.770294 TGAAGAACCCACCAACCAAC 58.230 50.000 0.00 0.00 0.00 3.77
2805 4204 2.419673 TGCTATGTGGATTTGTGCTTCG 59.580 45.455 0.00 0.00 0.00 3.79
2806 4205 4.439305 TTGCTATGTGGATTTGTGCTTC 57.561 40.909 0.00 0.00 0.00 3.86
2943 4348 0.990374 ACCTCTGCAAGCTGAAGGAT 59.010 50.000 17.45 5.99 0.00 3.24
2964 4370 1.732917 CAAAGCCGTGCACTTTCCA 59.267 52.632 16.19 0.00 35.19 3.53
2985 4391 1.344763 ACATAGCCTAAGCGACCATCC 59.655 52.381 0.00 0.00 46.67 3.51
3017 4423 4.682778 TCTTATTACTGAACCCCCATCG 57.317 45.455 0.00 0.00 0.00 3.84
3050 4456 6.574350 ACAAATAAGATACAGAAGAGACCCG 58.426 40.000 0.00 0.00 0.00 5.28
3052 4458 9.308318 GAGAACAAATAAGATACAGAAGAGACC 57.692 37.037 0.00 0.00 0.00 3.85
3059 4465 8.717821 CAAAACCGAGAACAAATAAGATACAGA 58.282 33.333 0.00 0.00 0.00 3.41
3060 4466 7.481798 GCAAAACCGAGAACAAATAAGATACAG 59.518 37.037 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.