Multiple sequence alignment - TraesCS7A01G426400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G426400 chr7A 100.000 5743 0 0 1 5743 619313393 619307651 0.000000e+00 10606.0
1 TraesCS7A01G426400 chr7A 92.472 1448 62 15 1101 2546 118469865 118468463 0.000000e+00 2026.0
2 TraesCS7A01G426400 chr7A 89.670 697 29 16 4313 4978 118466802 118466118 0.000000e+00 848.0
3 TraesCS7A01G426400 chr7A 87.520 641 48 9 1 638 118471986 118471375 0.000000e+00 712.0
4 TraesCS7A01G426400 chr7A 85.714 630 53 13 3230 3843 118467931 118467323 1.050000e-176 630.0
5 TraesCS7A01G426400 chr7A 85.941 505 42 17 2521 3009 118468435 118467944 3.970000e-141 512.0
6 TraesCS7A01G426400 chr7A 93.525 139 5 3 636 774 118471272 118471138 2.710000e-48 204.0
7 TraesCS7A01G426400 chr7A 90.071 141 7 6 840 978 118470006 118469871 5.910000e-40 176.0
8 TraesCS7A01G426400 chr7A 95.918 49 1 1 764 811 118470050 118470002 1.720000e-10 78.7
9 TraesCS7A01G426400 chr7D 90.315 2726 158 41 88 2752 113590625 113587945 0.000000e+00 3474.0
10 TraesCS7A01G426400 chr7D 88.578 1287 54 40 4313 5519 113587007 113585734 0.000000e+00 1476.0
11 TraesCS7A01G426400 chr7D 85.160 438 37 11 3416 3843 113587943 113587524 1.910000e-114 424.0
12 TraesCS7A01G426400 chr7D 88.995 209 10 7 5548 5743 113585738 113585530 4.440000e-61 246.0
13 TraesCS7A01G426400 chr7D 95.833 120 5 0 1 120 113590738 113590619 1.630000e-45 195.0
14 TraesCS7A01G426400 chr7D 93.548 124 6 2 4198 4321 177118777 177118656 3.530000e-42 183.0
15 TraesCS7A01G426400 chr7B 90.179 1955 109 51 762 2660 73183590 73181663 0.000000e+00 2470.0
16 TraesCS7A01G426400 chr7B 95.441 658 25 3 4319 4971 73179827 73179170 0.000000e+00 1044.0
17 TraesCS7A01G426400 chr7B 82.152 381 57 7 3227 3604 73181258 73180886 3.340000e-82 316.0
18 TraesCS7A01G426400 chr6B 86.999 1923 181 48 993 2864 665740423 665738519 0.000000e+00 2102.0
19 TraesCS7A01G426400 chr6B 94.068 472 24 2 4316 4783 665736946 665736475 0.000000e+00 713.0
20 TraesCS7A01G426400 chr6B 89.109 303 29 2 4512 4811 665733531 665733230 1.950000e-99 374.0
21 TraesCS7A01G426400 chr6B 77.633 693 95 24 2915 3586 665738296 665737643 3.270000e-97 366.0
22 TraesCS7A01G426400 chr6B 90.476 105 7 1 4858 4959 665736450 665736346 1.000000e-27 135.0
23 TraesCS7A01G426400 chr6B 76.923 143 16 4 776 917 665741957 665741831 1.340000e-06 65.8
24 TraesCS7A01G426400 chr6A 89.291 663 68 3 1658 2320 588863358 588862699 0.000000e+00 828.0
25 TraesCS7A01G426400 chr6A 91.287 505 38 4 4314 4813 588861102 588860599 0.000000e+00 684.0
26 TraesCS7A01G426400 chr6A 92.308 52 1 2 4818 4867 588860573 588860523 2.870000e-08 71.3
27 TraesCS7A01G426400 chr6D 91.054 503 42 1 4314 4813 440839730 440839228 0.000000e+00 676.0
28 TraesCS7A01G426400 chr6D 93.750 48 1 2 4822 4867 440839199 440839152 2.870000e-08 71.3
29 TraesCS7A01G426400 chr3A 81.102 381 34 15 4991 5355 686840068 686839710 2.640000e-68 270.0
30 TraesCS7A01G426400 chr3A 84.375 64 4 6 4164 4224 651514181 651514241 2.240000e-04 58.4
31 TraesCS7A01G426400 chr3B 79.751 321 36 10 5060 5355 729210456 729210140 7.540000e-49 206.0
32 TraesCS7A01G426400 chr5D 93.600 125 6 1 4197 4321 349803572 349803694 9.830000e-43 185.0
33 TraesCS7A01G426400 chr5D 92.188 128 7 2 4198 4325 27461740 27461864 1.640000e-40 178.0
34 TraesCS7A01G426400 chr5D 90.977 133 9 2 4190 4321 138565548 138565678 5.910000e-40 176.0
35 TraesCS7A01G426400 chr5D 90.299 134 10 2 4190 4322 312934224 312934355 7.650000e-39 172.0
36 TraesCS7A01G426400 chr1A 94.262 122 6 1 4194 4315 9093109 9092989 9.830000e-43 185.0
37 TraesCS7A01G426400 chr4D 94.118 119 7 0 4198 4316 277417821 277417939 1.270000e-41 182.0
38 TraesCS7A01G426400 chr2A 94.118 119 5 1 4197 4315 502330481 502330365 4.570000e-41 180.0
39 TraesCS7A01G426400 chr1B 90.909 132 8 3 4194 4325 643120789 643120916 2.130000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G426400 chr7A 619307651 619313393 5742 True 10606.000000 10606 100.000000 1 5743 1 chr7A.!!$R1 5742
1 TraesCS7A01G426400 chr7A 118466118 118471986 5868 True 648.337500 2026 90.103875 1 4978 8 chr7A.!!$R2 4977
2 TraesCS7A01G426400 chr7D 113585530 113590738 5208 True 1163.000000 3474 89.776200 1 5743 5 chr7D.!!$R2 5742
3 TraesCS7A01G426400 chr7B 73179170 73183590 4420 True 1276.666667 2470 89.257333 762 4971 3 chr7B.!!$R1 4209
4 TraesCS7A01G426400 chr6B 665733230 665741957 8727 True 625.966667 2102 85.868000 776 4959 6 chr6B.!!$R1 4183
5 TraesCS7A01G426400 chr6A 588860523 588863358 2835 True 527.766667 828 90.962000 1658 4867 3 chr6A.!!$R1 3209
6 TraesCS7A01G426400 chr6D 440839152 440839730 578 True 373.650000 676 92.402000 4314 4867 2 chr6D.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 268 1.502231 CGGATATTAGTGCGCTTGCT 58.498 50.000 9.73 6.96 40.12 3.91 F
2075 4706 1.552792 TGGGTATGCTGATGTTGTCGA 59.447 47.619 0.00 0.00 0.00 4.20 F
2913 5670 0.037590 TGTGTGGGCCATACACTTCC 59.962 55.000 29.46 14.23 46.49 3.46 F
4017 7664 0.257039 GGCCTCATGGTCTTGGACAT 59.743 55.000 0.00 0.00 34.49 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 4709 0.035630 GCCATCTCCAGCAGACACTT 60.036 55.0 0.00 0.0 32.26 3.16 R
3148 6136 0.609662 GTGAAAATGGGCAGCCATGT 59.390 50.0 15.19 0.0 0.00 3.21 R
4197 7960 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
5237 9078 0.106918 ACCACCAACCGTGTGATTGT 60.107 50.0 0.00 0.0 41.26 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 8.965819 ACATACATATGCAAGTATCCAACAAAA 58.034 29.630 1.58 0.00 37.19 2.44
228 255 6.715280 ACAATCCATTATCTCAAGCGGATAT 58.285 36.000 0.00 0.00 32.96 1.63
229 256 7.170965 ACAATCCATTATCTCAAGCGGATATT 58.829 34.615 0.00 0.00 32.96 1.28
241 268 1.502231 CGGATATTAGTGCGCTTGCT 58.498 50.000 9.73 6.96 40.12 3.91
254 281 3.064408 TGCGCTTGCTCTTGATTAATCAG 59.936 43.478 17.28 12.03 37.55 2.90
320 347 6.319658 TGCAGAAGAGAAGAATTTGAACAACT 59.680 34.615 0.00 0.00 0.00 3.16
354 384 6.887626 AAAAACTCAAGACCCGCTTTATAA 57.112 33.333 0.00 0.00 33.60 0.98
360 390 8.570068 ACTCAAGACCCGCTTTATAAATAAAA 57.430 30.769 0.00 0.00 33.60 1.52
368 398 7.698970 ACCCGCTTTATAAATAAAACACAATCG 59.301 33.333 0.00 0.00 32.39 3.34
459 489 1.965930 TTACGGGCAGCAGCACTTG 60.966 57.895 0.56 0.00 43.86 3.16
489 519 5.453198 CCAAACCCAAAAGCAACAGAACTAT 60.453 40.000 0.00 0.00 0.00 2.12
502 532 5.543507 ACAGAACTATAATCAGGAGCAGG 57.456 43.478 0.00 0.00 0.00 4.85
503 533 5.211973 ACAGAACTATAATCAGGAGCAGGA 58.788 41.667 0.00 0.00 0.00 3.86
504 534 5.304101 ACAGAACTATAATCAGGAGCAGGAG 59.696 44.000 0.00 0.00 0.00 3.69
505 535 4.283212 AGAACTATAATCAGGAGCAGGAGC 59.717 45.833 0.00 0.00 42.56 4.70
506 536 3.581101 ACTATAATCAGGAGCAGGAGCA 58.419 45.455 0.00 0.00 45.49 4.26
507 537 3.577848 ACTATAATCAGGAGCAGGAGCAG 59.422 47.826 0.00 0.00 45.49 4.24
508 538 1.871418 TAATCAGGAGCAGGAGCAGT 58.129 50.000 0.00 0.00 45.49 4.40
622 652 5.204833 CAAATTAACATATTCGGCCTCACG 58.795 41.667 0.00 0.00 0.00 4.35
645 780 5.760253 CGGCTATTGTCATCTACCAAAGATT 59.240 40.000 0.00 0.00 42.62 2.40
854 2117 2.336088 CACTGGGCCGCAAGTTTG 59.664 61.111 0.00 0.00 0.00 2.93
916 2179 4.864334 CCAGGTCCATCCAGCGCC 62.864 72.222 2.29 0.00 39.02 6.53
1173 3772 2.035632 GACAAGATGATCTCCTCGGGT 58.964 52.381 0.00 0.00 0.00 5.28
1227 3833 2.026734 ATCCTCTCGCGCATGTCG 59.973 61.111 8.75 5.35 42.12 4.35
1476 4089 2.711922 CCGGGACTCCCTCGTCAAG 61.712 68.421 12.62 0.00 42.67 3.02
1632 4245 2.167398 TAAAGAAGCTCGGCGGCACT 62.167 55.000 19.61 15.17 34.17 4.40
2069 4700 2.814805 AAGCTTGGGTATGCTGATGT 57.185 45.000 0.00 0.00 37.38 3.06
2070 4701 2.814805 AGCTTGGGTATGCTGATGTT 57.185 45.000 0.00 0.00 36.12 2.71
2071 4702 2.372264 AGCTTGGGTATGCTGATGTTG 58.628 47.619 0.00 0.00 36.12 3.33
2072 4703 2.094675 GCTTGGGTATGCTGATGTTGT 58.905 47.619 0.00 0.00 0.00 3.32
2073 4704 2.098117 GCTTGGGTATGCTGATGTTGTC 59.902 50.000 0.00 0.00 0.00 3.18
2074 4705 2.022764 TGGGTATGCTGATGTTGTCG 57.977 50.000 0.00 0.00 0.00 4.35
2075 4706 1.552792 TGGGTATGCTGATGTTGTCGA 59.447 47.619 0.00 0.00 0.00 4.20
2076 4707 2.205074 GGGTATGCTGATGTTGTCGAG 58.795 52.381 0.00 0.00 0.00 4.04
2077 4708 2.205074 GGTATGCTGATGTTGTCGAGG 58.795 52.381 0.00 0.00 0.00 4.63
2078 4709 2.159099 GGTATGCTGATGTTGTCGAGGA 60.159 50.000 0.00 0.00 0.00 3.71
2079 4710 2.768253 ATGCTGATGTTGTCGAGGAA 57.232 45.000 0.00 0.00 0.00 3.36
2080 4711 2.084610 TGCTGATGTTGTCGAGGAAG 57.915 50.000 0.00 0.00 0.00 3.46
2081 4712 1.344438 TGCTGATGTTGTCGAGGAAGT 59.656 47.619 0.00 0.00 0.00 3.01
2082 4713 1.728971 GCTGATGTTGTCGAGGAAGTG 59.271 52.381 0.00 0.00 0.00 3.16
2083 4714 2.868044 GCTGATGTTGTCGAGGAAGTGT 60.868 50.000 0.00 0.00 0.00 3.55
2084 4715 2.989840 CTGATGTTGTCGAGGAAGTGTC 59.010 50.000 0.00 0.00 0.00 3.67
2085 4716 2.628178 TGATGTTGTCGAGGAAGTGTCT 59.372 45.455 0.00 0.00 0.00 3.41
2086 4717 2.509052 TGTTGTCGAGGAAGTGTCTG 57.491 50.000 0.00 0.00 0.00 3.51
2115 4746 3.084039 TGGCAAGATTGTCAAGATCACC 58.916 45.455 0.00 0.00 40.28 4.02
2118 4749 2.679837 CAAGATTGTCAAGATCACCGGG 59.320 50.000 6.32 0.00 0.00 5.73
2205 4836 1.850377 CTGATCGCAGTCTCCATGAC 58.150 55.000 0.00 0.00 45.67 3.06
2272 4907 8.322906 TCTTCTGTGTGTTATATGAAAGGTTG 57.677 34.615 0.00 0.00 0.00 3.77
2275 4910 7.450074 TCTGTGTGTTATATGAAAGGTTGTCT 58.550 34.615 0.00 0.00 0.00 3.41
2278 4913 9.378551 TGTGTGTTATATGAAAGGTTGTCTATC 57.621 33.333 0.00 0.00 0.00 2.08
2303 4941 4.583871 AGTCCTGCTTTTCTAGGTCATTG 58.416 43.478 0.00 0.00 35.54 2.82
2311 4949 9.330063 CTGCTTTTCTAGGTCATTGTGAATATA 57.670 33.333 0.00 0.00 0.00 0.86
2313 4951 8.286097 GCTTTTCTAGGTCATTGTGAATATAGC 58.714 37.037 0.00 0.00 0.00 2.97
2347 5009 8.184192 GTGAAGTCTTATTGGTAAATGATGTGG 58.816 37.037 0.00 0.00 0.00 4.17
2354 5016 9.396022 CTTATTGGTAAATGATGTGGAGTAACT 57.604 33.333 0.00 0.00 0.00 2.24
2459 5125 8.668353 TGAATCTGTTCATAGCAGTAAATTGTC 58.332 33.333 0.00 0.00 39.36 3.18
2479 5147 7.499321 TTGTCAAGTGGTATAAACGAACATT 57.501 32.000 0.00 0.00 0.00 2.71
2562 5286 9.936329 AAACACACAAATATTATAGGATCCCTT 57.064 29.630 8.55 0.00 34.61 3.95
2579 5303 5.327737 TCCCTTTGTTATTGTAGGTTGGT 57.672 39.130 0.00 0.00 0.00 3.67
2580 5304 6.451292 TCCCTTTGTTATTGTAGGTTGGTA 57.549 37.500 0.00 0.00 0.00 3.25
2581 5305 6.478129 TCCCTTTGTTATTGTAGGTTGGTAG 58.522 40.000 0.00 0.00 0.00 3.18
2599 5340 7.338449 GGTTGGTAGAGTAAATGCAATTTCCTA 59.662 37.037 0.00 0.00 44.81 2.94
2632 5373 6.479990 GCTTGCACATATACTGTCATGTTCTA 59.520 38.462 5.48 0.00 35.29 2.10
2660 5401 4.411869 TGCCATTATCAACATGGTCTCCTA 59.588 41.667 0.00 0.00 43.01 2.94
2672 5413 5.248477 ACATGGTCTCCTACTGTTATGTTGT 59.752 40.000 0.00 0.00 0.00 3.32
2673 5414 5.818678 TGGTCTCCTACTGTTATGTTGTT 57.181 39.130 0.00 0.00 0.00 2.83
2674 5415 5.547465 TGGTCTCCTACTGTTATGTTGTTG 58.453 41.667 0.00 0.00 0.00 3.33
2686 5427 3.829886 ATGTTGTTGCTTCCACATACG 57.170 42.857 0.00 0.00 0.00 3.06
2752 5506 4.157840 CCACTATATATGCTGCGGTAGACA 59.842 45.833 0.00 0.00 0.00 3.41
2755 5509 4.808414 ATATATGCTGCGGTAGACACAT 57.192 40.909 0.00 0.00 0.00 3.21
2774 5528 3.643792 ACATAGGGAGCATAGGTTCACTC 59.356 47.826 0.00 0.00 37.38 3.51
2776 5530 1.112113 GGGAGCATAGGTTCACTCGA 58.888 55.000 0.00 0.00 0.00 4.04
2827 5581 9.468532 GTTTGATCAAGCTCAATTTACTTTCTT 57.531 29.630 14.41 0.00 35.20 2.52
2912 5669 1.904287 TTGTGTGGGCCATACACTTC 58.096 50.000 32.36 8.37 46.49 3.01
2913 5670 0.037590 TGTGTGGGCCATACACTTCC 59.962 55.000 29.46 14.23 46.49 3.46
2932 5883 4.970662 TCCTCATTTGCTAAGTTGCATC 57.029 40.909 0.00 0.00 42.96 3.91
2992 5943 9.605275 TTGTCATCTATACTTTTGAATCTGGAG 57.395 33.333 0.00 0.00 0.00 3.86
3009 5960 5.324409 TCTGGAGATTTGGTGCTTTATGTT 58.676 37.500 0.00 0.00 0.00 2.71
3011 5962 4.220382 TGGAGATTTGGTGCTTTATGTTGG 59.780 41.667 0.00 0.00 0.00 3.77
3053 6032 7.448748 AATTAAATTCACAAGAGTAAGCGGT 57.551 32.000 0.00 0.00 0.00 5.68
3078 6065 2.949177 TAGGCTTTGACCTTTGAGCA 57.051 45.000 0.00 0.00 41.50 4.26
3110 6098 5.597758 ACCTTTTAGGGTTAGCCTACTACT 58.402 41.667 9.97 0.00 40.58 2.57
3114 6102 7.344093 CCTTTTAGGGTTAGCCTACTACTTACT 59.656 40.741 9.97 0.00 34.45 2.24
3144 6132 4.397417 AGCAGCACTTCTGTATTTCATTCC 59.603 41.667 0.00 0.00 44.66 3.01
3148 6136 4.943705 GCACTTCTGTATTTCATTCCTGGA 59.056 41.667 0.00 0.00 0.00 3.86
3150 6138 5.939883 CACTTCTGTATTTCATTCCTGGACA 59.060 40.000 0.00 0.00 0.00 4.02
3151 6139 6.600822 CACTTCTGTATTTCATTCCTGGACAT 59.399 38.462 0.00 0.00 0.00 3.06
3153 6141 5.439721 TCTGTATTTCATTCCTGGACATGG 58.560 41.667 14.62 0.00 0.00 3.66
3154 6142 3.953612 TGTATTTCATTCCTGGACATGGC 59.046 43.478 14.62 0.00 0.00 4.40
3155 6143 2.905415 TTTCATTCCTGGACATGGCT 57.095 45.000 0.00 0.00 0.00 4.75
3157 6145 0.394762 TCATTCCTGGACATGGCTGC 60.395 55.000 0.00 0.00 0.00 5.25
3158 6146 1.076485 ATTCCTGGACATGGCTGCC 60.076 57.895 12.87 12.87 0.00 4.85
3159 6147 2.578586 ATTCCTGGACATGGCTGCCC 62.579 60.000 17.53 0.00 0.00 5.36
3169 6157 2.657297 TGGCTGCCCATTTTCACTC 58.343 52.632 17.53 0.00 35.79 3.51
3170 6158 1.243342 TGGCTGCCCATTTTCACTCG 61.243 55.000 17.53 0.00 35.79 4.18
3172 6160 0.881118 GCTGCCCATTTTCACTCGAA 59.119 50.000 0.00 0.00 0.00 3.71
3194 6186 6.478512 AAAGAAATAGGGTTTTTGTGCAGA 57.521 33.333 0.00 0.00 0.00 4.26
3195 6187 6.478512 AAGAAATAGGGTTTTTGTGCAGAA 57.521 33.333 0.00 0.00 0.00 3.02
3249 6241 3.119531 CCTGCTTTGTGAACACAGTGAAA 60.120 43.478 7.81 0.00 42.94 2.69
3250 6242 4.440525 CCTGCTTTGTGAACACAGTGAAAT 60.441 41.667 7.81 0.00 42.94 2.17
3274 6266 2.027192 ACTCTCTCTCTCGCTCTTCACT 60.027 50.000 0.00 0.00 0.00 3.41
3288 6280 3.578716 CTCTTCACTTCACCCCTCTGTAA 59.421 47.826 0.00 0.00 0.00 2.41
3328 6320 3.928754 TGGCTAGATCACCTCTTATGGT 58.071 45.455 0.00 0.00 41.77 3.55
3420 6419 6.348498 AGTTGTTAGTATCTGTGCATGCATA 58.652 36.000 25.64 20.93 0.00 3.14
3439 6438 4.035675 GCATACTGGCAAGTTAGGATGTTC 59.964 45.833 0.00 0.00 37.53 3.18
3475 6474 7.201767 GCAAGATGGCAAGAAGTAGAATGTAAT 60.202 37.037 0.00 0.00 0.00 1.89
3477 6476 9.905713 AAGATGGCAAGAAGTAGAATGTAATTA 57.094 29.630 0.00 0.00 36.07 1.40
3515 6514 3.601443 AGCACTTAGTCAGCTAGTTGG 57.399 47.619 6.75 0.00 36.73 3.77
3539 6586 3.570926 ATCTTGAGTTGCATGCAAGTG 57.429 42.857 38.46 25.99 39.43 3.16
3609 6714 7.201384 GCTGTTTGAGATTTAGCTGTAAAATGC 60.201 37.037 0.00 0.00 31.81 3.56
3625 6730 3.942130 AATGCCAGCTTGGTAAAGTTC 57.058 42.857 4.45 0.00 40.46 3.01
3629 6734 2.809696 GCCAGCTTGGTAAAGTTCGTAA 59.190 45.455 4.45 0.00 40.46 3.18
3630 6735 3.120304 GCCAGCTTGGTAAAGTTCGTAAG 60.120 47.826 4.45 0.00 40.46 2.34
3631 6736 4.062991 CCAGCTTGGTAAAGTTCGTAAGT 58.937 43.478 0.00 0.00 35.69 2.24
3633 6738 4.510340 CAGCTTGGTAAAGTTCGTAAGTGT 59.490 41.667 0.00 0.00 35.69 3.55
3634 6739 5.693104 CAGCTTGGTAAAGTTCGTAAGTGTA 59.307 40.000 0.00 0.00 35.69 2.90
3646 6751 6.698766 AGTTCGTAAGTGTAGTAGGTTTGTTG 59.301 38.462 0.00 0.00 39.48 3.33
3649 6754 5.754890 CGTAAGTGTAGTAGGTTTGTTGGTT 59.245 40.000 0.00 0.00 0.00 3.67
3661 6766 7.907841 AGGTTTGTTGGTTAGTCCTAAAATT 57.092 32.000 0.00 0.00 37.07 1.82
3703 6811 5.631929 TGTAATACAAGCTTGTCGTAGTGTG 59.368 40.000 34.29 4.09 42.35 3.82
3717 7100 2.841442 AGTGTGTAAGCTTCAGACCC 57.159 50.000 0.00 0.00 30.89 4.46
3748 7134 4.458989 GCATGTTTATGTGAGAAACCAGGA 59.541 41.667 0.00 0.00 36.20 3.86
3749 7135 5.126061 GCATGTTTATGTGAGAAACCAGGAT 59.874 40.000 0.00 0.00 36.20 3.24
3764 7150 1.409427 CAGGATAGTGACGAAGGGGTC 59.591 57.143 0.00 0.00 37.45 4.46
3777 7163 0.700564 AGGGGTCTGTGTGCATCATT 59.299 50.000 0.00 0.00 0.00 2.57
3785 7185 5.126061 GGTCTGTGTGCATCATTTCCTTTAT 59.874 40.000 0.00 0.00 0.00 1.40
3830 7230 2.521547 AGCTAGCTCCAATGCCTTTT 57.478 45.000 12.68 0.00 0.00 2.27
3851 7287 7.700656 CCTTTTTACTGCCTTTTGGATATTACG 59.299 37.037 0.00 0.00 44.07 3.18
3857 7293 5.432645 TGCCTTTTGGATATTACGATGACA 58.567 37.500 0.00 0.00 44.07 3.58
3859 7295 5.527582 GCCTTTTGGATATTACGATGACAGT 59.472 40.000 0.00 0.00 44.07 3.55
3876 7312 4.142071 TGACAGTCTCATCTTATGCCTGTC 60.142 45.833 17.71 17.71 43.08 3.51
3882 7318 6.888632 AGTCTCATCTTATGCCTGTCAATTTT 59.111 34.615 0.00 0.00 0.00 1.82
3887 7323 8.801299 TCATCTTATGCCTGTCAATTTTAACAA 58.199 29.630 0.00 0.00 0.00 2.83
3891 7327 9.421806 CTTATGCCTGTCAATTTTAACAATTCA 57.578 29.630 0.00 0.00 0.00 2.57
3892 7328 9.941325 TTATGCCTGTCAATTTTAACAATTCAT 57.059 25.926 0.00 0.00 0.00 2.57
3893 7329 7.655236 TGCCTGTCAATTTTAACAATTCATG 57.345 32.000 0.00 0.00 0.00 3.07
3894 7330 7.215789 TGCCTGTCAATTTTAACAATTCATGT 58.784 30.769 0.00 0.00 46.82 3.21
3955 7601 4.272504 CGAAGAAACAACTGCTTGGAGTAA 59.727 41.667 0.00 0.00 0.00 2.24
3957 7603 5.757850 AGAAACAACTGCTTGGAGTAAAG 57.242 39.130 0.00 0.00 0.00 1.85
3970 7616 6.877611 TTGGAGTAAAGCTCTTTTTACAGG 57.122 37.500 8.37 0.00 42.97 4.00
3971 7617 4.760204 TGGAGTAAAGCTCTTTTTACAGGC 59.240 41.667 8.37 0.00 42.97 4.85
3972 7618 4.156190 GGAGTAAAGCTCTTTTTACAGGCC 59.844 45.833 0.00 0.00 42.97 5.19
3973 7619 4.986783 AGTAAAGCTCTTTTTACAGGCCT 58.013 39.130 0.00 0.00 42.97 5.19
4012 7659 1.001764 TGCTGGCCTCATGGTCTTG 60.002 57.895 3.32 0.00 39.11 3.02
4013 7660 1.751927 GCTGGCCTCATGGTCTTGG 60.752 63.158 3.32 0.00 39.11 3.61
4014 7661 1.993653 CTGGCCTCATGGTCTTGGA 59.006 57.895 3.32 0.00 39.11 3.53
4015 7662 0.393537 CTGGCCTCATGGTCTTGGAC 60.394 60.000 3.32 0.00 39.11 4.02
4016 7663 1.133181 TGGCCTCATGGTCTTGGACA 61.133 55.000 3.32 0.00 39.11 4.02
4017 7664 0.257039 GGCCTCATGGTCTTGGACAT 59.743 55.000 0.00 0.00 34.49 3.06
4018 7665 1.490490 GGCCTCATGGTCTTGGACATA 59.510 52.381 0.00 0.00 34.49 2.29
4020 7667 3.327757 GGCCTCATGGTCTTGGACATATA 59.672 47.826 0.00 0.00 34.49 0.86
4021 7668 4.202461 GGCCTCATGGTCTTGGACATATAA 60.202 45.833 0.00 0.00 34.49 0.98
4022 7669 4.757149 GCCTCATGGTCTTGGACATATAAC 59.243 45.833 0.00 0.00 33.68 1.89
4025 7689 7.000472 CCTCATGGTCTTGGACATATAACAAT 59.000 38.462 0.00 0.00 33.68 2.71
4077 7741 3.562973 CCTTGAGCATAAGTAGGCATGTG 59.437 47.826 0.00 0.00 35.07 3.21
4090 7754 1.812571 GGCATGTGTCCTCGTGAAATT 59.187 47.619 0.00 0.00 0.00 1.82
4111 7775 9.241317 GAAATTATTATTCTTGCTCATGGTGTG 57.759 33.333 0.00 0.00 0.00 3.82
4112 7776 7.886629 ATTATTATTCTTGCTCATGGTGTGT 57.113 32.000 0.00 0.00 0.00 3.72
4113 7777 5.571784 ATTATTCTTGCTCATGGTGTGTG 57.428 39.130 0.00 0.00 0.00 3.82
4117 7781 2.358582 TCTTGCTCATGGTGTGTGTTTG 59.641 45.455 0.00 0.00 0.00 2.93
4127 7791 2.094752 GGTGTGTGTTTGAAGCTTGTGT 60.095 45.455 2.10 0.00 0.00 3.72
4201 7964 9.946165 ACACTGTTTTTAGCTTAAAATGTACTC 57.054 29.630 13.24 1.36 37.48 2.59
4202 7965 9.394477 CACTGTTTTTAGCTTAAAATGTACTCC 57.606 33.333 13.24 0.72 37.48 3.85
4203 7966 8.573885 ACTGTTTTTAGCTTAAAATGTACTCCC 58.426 33.333 13.24 0.08 37.48 4.30
4204 7967 8.700439 TGTTTTTAGCTTAAAATGTACTCCCT 57.300 30.769 13.24 0.00 37.48 4.20
4205 7968 8.789762 TGTTTTTAGCTTAAAATGTACTCCCTC 58.210 33.333 13.24 0.00 37.48 4.30
4206 7969 7.933215 TTTTAGCTTAAAATGTACTCCCTCC 57.067 36.000 0.00 0.00 33.08 4.30
4207 7970 4.138487 AGCTTAAAATGTACTCCCTCCG 57.862 45.455 0.00 0.00 0.00 4.63
4208 7971 3.518303 AGCTTAAAATGTACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
4209 7972 3.869832 GCTTAAAATGTACTCCCTCCGTC 59.130 47.826 0.00 0.00 0.00 4.79
4210 7973 4.439968 CTTAAAATGTACTCCCTCCGTCC 58.560 47.826 0.00 0.00 0.00 4.79
4211 7974 0.822164 AAATGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
4212 7975 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
4213 7976 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
4214 7977 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4215 7978 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4216 7979 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4217 7980 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4218 7981 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4219 7982 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4220 7983 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4221 7984 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4222 7985 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4223 7986 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4224 7987 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
4225 7988 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
4226 7989 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
4227 7990 3.442100 CGTCCGGAAATACTTGTCCTAC 58.558 50.000 5.23 0.00 0.00 3.18
4228 7991 3.119388 CGTCCGGAAATACTTGTCCTACA 60.119 47.826 5.23 0.00 0.00 2.74
4229 7992 4.430908 GTCCGGAAATACTTGTCCTACAG 58.569 47.826 5.23 0.00 0.00 2.74
4230 7993 4.159135 GTCCGGAAATACTTGTCCTACAGA 59.841 45.833 5.23 0.00 0.00 3.41
4231 7994 4.960469 TCCGGAAATACTTGTCCTACAGAT 59.040 41.667 0.00 0.00 0.00 2.90
4232 7995 5.050490 CCGGAAATACTTGTCCTACAGATG 58.950 45.833 0.00 0.00 0.00 2.90
4233 7996 5.050490 CGGAAATACTTGTCCTACAGATGG 58.950 45.833 0.00 0.00 0.00 3.51
4234 7997 5.395324 CGGAAATACTTGTCCTACAGATGGT 60.395 44.000 0.00 0.00 0.00 3.55
4235 7998 6.415573 GGAAATACTTGTCCTACAGATGGTT 58.584 40.000 0.00 0.00 0.00 3.67
4236 7999 6.316390 GGAAATACTTGTCCTACAGATGGTTG 59.684 42.308 0.00 0.00 0.00 3.77
4237 8000 6.374417 AATACTTGTCCTACAGATGGTTGT 57.626 37.500 0.00 0.00 35.09 3.32
4238 8001 7.490657 AATACTTGTCCTACAGATGGTTGTA 57.509 36.000 0.00 0.00 32.56 2.41
4239 8002 7.676683 ATACTTGTCCTACAGATGGTTGTAT 57.323 36.000 0.00 0.00 33.38 2.29
4240 8003 5.978814 ACTTGTCCTACAGATGGTTGTATC 58.021 41.667 0.00 0.00 33.38 2.24
4241 8004 5.721960 ACTTGTCCTACAGATGGTTGTATCT 59.278 40.000 0.00 0.00 37.90 1.98
4242 8005 6.895756 ACTTGTCCTACAGATGGTTGTATCTA 59.104 38.462 0.00 0.00 35.70 1.98
4243 8006 6.961360 TGTCCTACAGATGGTTGTATCTAG 57.039 41.667 0.00 0.00 35.70 2.43
4244 8007 6.669631 TGTCCTACAGATGGTTGTATCTAGA 58.330 40.000 0.00 0.00 35.70 2.43
4245 8008 6.546403 TGTCCTACAGATGGTTGTATCTAGAC 59.454 42.308 0.00 0.00 35.70 2.59
4246 8009 6.773685 GTCCTACAGATGGTTGTATCTAGACT 59.226 42.308 0.00 0.00 35.70 3.24
4247 8010 7.285858 GTCCTACAGATGGTTGTATCTAGACTT 59.714 40.741 0.00 0.00 35.70 3.01
4248 8011 8.500238 TCCTACAGATGGTTGTATCTAGACTTA 58.500 37.037 0.00 0.00 35.70 2.24
4249 8012 9.303116 CCTACAGATGGTTGTATCTAGACTTAT 57.697 37.037 0.00 0.00 35.70 1.73
4291 8054 9.699410 ACATCCATTTTATTCATTTCTAGGACA 57.301 29.630 0.00 0.00 0.00 4.02
4293 8056 8.752005 TCCATTTTATTCATTTCTAGGACAGG 57.248 34.615 0.00 0.00 0.00 4.00
4294 8057 8.336235 TCCATTTTATTCATTTCTAGGACAGGT 58.664 33.333 0.00 0.00 0.00 4.00
4295 8058 9.627123 CCATTTTATTCATTTCTAGGACAGGTA 57.373 33.333 0.00 0.00 0.00 3.08
4300 8063 9.847224 TTATTCATTTCTAGGACAGGTATTTCC 57.153 33.333 0.00 0.00 0.00 3.13
4301 8064 5.914033 TCATTTCTAGGACAGGTATTTCCG 58.086 41.667 0.00 0.00 41.99 4.30
4302 8065 4.748277 TTTCTAGGACAGGTATTTCCGG 57.252 45.455 0.00 0.00 41.99 5.14
4303 8066 3.675348 TCTAGGACAGGTATTTCCGGA 57.325 47.619 0.00 0.00 41.99 5.14
4304 8067 3.294214 TCTAGGACAGGTATTTCCGGAC 58.706 50.000 1.83 0.00 41.99 4.79
4305 8068 0.822164 AGGACAGGTATTTCCGGACG 59.178 55.000 1.83 0.00 41.99 4.79
4306 8069 0.179092 GGACAGGTATTTCCGGACGG 60.179 60.000 1.83 3.96 41.99 4.79
4307 8070 0.819582 GACAGGTATTTCCGGACGGA 59.180 55.000 1.83 9.76 43.52 4.69
4308 8071 0.822164 ACAGGTATTTCCGGACGGAG 59.178 55.000 13.64 3.15 46.06 4.63
4309 8072 0.104304 CAGGTATTTCCGGACGGAGG 59.896 60.000 13.64 0.00 46.06 4.30
4310 8073 1.047034 AGGTATTTCCGGACGGAGGG 61.047 60.000 13.64 0.00 46.06 4.30
4311 8074 1.444672 GTATTTCCGGACGGAGGGG 59.555 63.158 13.64 0.00 46.06 4.79
4490 8255 0.169009 GCATCAAGGAGTTTGCCGAC 59.831 55.000 0.00 0.00 36.70 4.79
4784 8558 7.945664 TCCTTTTTAGGGCTGTATTTTTCTGTA 59.054 33.333 0.00 0.00 0.00 2.74
4961 8765 6.573617 GCAACAATATGCACAATTAACTCC 57.426 37.500 0.00 0.00 45.70 3.85
4981 8785 5.366768 ACTCCAAAGCATAGGTATCTAGCAA 59.633 40.000 7.07 0.00 0.00 3.91
5001 8824 5.987347 AGCAAGATTTGTTTGAGATGTTTGG 59.013 36.000 0.00 0.00 0.00 3.28
5053 8876 0.884704 CGTGGGCTATTTGGGATCGG 60.885 60.000 0.00 0.00 0.00 4.18
5054 8877 0.472471 GTGGGCTATTTGGGATCGGA 59.528 55.000 0.00 0.00 0.00 4.55
5057 8880 1.676014 GGGCTATTTGGGATCGGATCG 60.676 57.143 11.62 0.00 0.00 3.69
5058 8881 1.676014 GGCTATTTGGGATCGGATCGG 60.676 57.143 11.62 0.00 0.00 4.18
5059 8882 1.002087 GCTATTTGGGATCGGATCGGT 59.998 52.381 11.62 0.00 0.00 4.69
5060 8883 2.550208 GCTATTTGGGATCGGATCGGTT 60.550 50.000 11.62 0.00 0.00 4.44
5063 8886 1.324740 TTGGGATCGGATCGGTTCGT 61.325 55.000 11.62 0.00 0.00 3.85
5066 8889 0.594284 GGATCGGATCGGTTCGTGTC 60.594 60.000 11.62 0.00 0.00 3.67
5067 8890 0.928908 GATCGGATCGGTTCGTGTCG 60.929 60.000 1.62 0.00 0.00 4.35
5068 8891 1.371337 ATCGGATCGGTTCGTGTCGA 61.371 55.000 0.00 0.00 39.79 4.20
5069 8892 1.582937 CGGATCGGTTCGTGTCGAG 60.583 63.158 0.00 0.00 38.83 4.04
5073 8899 2.438583 GATCGGTTCGTGTCGAGTTAG 58.561 52.381 0.00 0.00 38.83 2.34
5076 8902 1.712350 CGGTTCGTGTCGAGTTAGTTG 59.288 52.381 0.00 0.00 37.14 3.16
5084 8910 2.198406 GTCGAGTTAGTTGTGTGCACA 58.802 47.619 17.42 17.42 39.98 4.57
5127 8954 3.011821 TCTTATCTCACTGTCTCCCCTGT 59.988 47.826 0.00 0.00 0.00 4.00
5143 8970 2.356125 CCCTGTTGATTTCGGACCTCAT 60.356 50.000 0.00 0.00 0.00 2.90
5144 8971 3.118408 CCCTGTTGATTTCGGACCTCATA 60.118 47.826 0.00 0.00 0.00 2.15
5145 8972 4.444876 CCCTGTTGATTTCGGACCTCATAT 60.445 45.833 0.00 0.00 0.00 1.78
5159 8986 6.572509 CGGACCTCATATAATCAAGTAGGGTG 60.573 46.154 0.00 0.00 0.00 4.61
5162 8989 7.911651 ACCTCATATAATCAAGTAGGGTGATG 58.088 38.462 0.00 0.00 35.87 3.07
5188 9015 7.529880 AGTTTTTGATTTGTTTGCTGAGAAG 57.470 32.000 0.00 0.00 0.00 2.85
5195 9022 5.581126 TTTGTTTGCTGAGAAGACAATGT 57.419 34.783 0.00 0.00 31.15 2.71
5215 9056 4.445453 TGTCTGATGATAACTGATGCCAC 58.555 43.478 0.00 0.00 0.00 5.01
5220 9061 5.255687 TGATGATAACTGATGCCACACTTT 58.744 37.500 0.00 0.00 0.00 2.66
5237 9078 3.006752 CACTTTGGCCCTTGCATTTCTTA 59.993 43.478 0.00 0.00 40.13 2.10
5266 9107 0.537371 GGTTGGTGGTGCTGTAGCTT 60.537 55.000 5.38 0.00 42.66 3.74
5279 9120 6.321717 GTGCTGTAGCTTAAATGCACAATTA 58.678 36.000 18.30 0.00 46.64 1.40
5280 9121 6.251376 GTGCTGTAGCTTAAATGCACAATTAC 59.749 38.462 18.30 0.00 46.64 1.89
5283 9124 7.008628 GCTGTAGCTTAAATGCACAATTACTTG 59.991 37.037 0.00 0.00 38.21 3.16
5284 9125 6.806249 TGTAGCTTAAATGCACAATTACTTGC 59.194 34.615 0.00 0.05 39.33 4.01
5299 9143 5.689383 TTACTTGCTCCTTTTGTCATGTC 57.311 39.130 0.00 0.00 0.00 3.06
5324 9168 0.392193 AATCTGTTGCCTCGCCTCAG 60.392 55.000 0.00 0.00 32.69 3.35
5329 9173 0.884704 GTTGCCTCGCCTCAGAAACA 60.885 55.000 0.00 0.00 0.00 2.83
5334 9178 2.858646 GCCTCGCCTCAGAAACAAAAAC 60.859 50.000 0.00 0.00 0.00 2.43
5335 9179 2.602217 CCTCGCCTCAGAAACAAAAACG 60.602 50.000 0.00 0.00 0.00 3.60
5338 9182 2.031683 CGCCTCAGAAACAAAAACGTCT 59.968 45.455 0.00 0.00 0.00 4.18
5359 9203 2.302733 TGAAGTGCCAAGTGCTGATCTA 59.697 45.455 0.00 0.00 42.00 1.98
5371 9215 5.463154 AGTGCTGATCTAAAGTAGGAGGAT 58.537 41.667 0.00 0.00 0.00 3.24
5465 9414 3.553095 AACCGCCTTGTCAGAGCCC 62.553 63.158 0.00 0.00 0.00 5.19
5499 9657 2.265739 TGCCTCACAGCATCGTCC 59.734 61.111 0.00 0.00 38.00 4.79
5519 9716 2.271800 CTTGTCCTAGTTGATGCCGTC 58.728 52.381 0.00 0.00 0.00 4.79
5541 9738 3.033184 CAAGGCGCTCAAAGCACA 58.967 55.556 7.64 0.00 42.58 4.57
5543 9740 0.455633 CAAGGCGCTCAAAGCACATC 60.456 55.000 7.64 0.00 42.58 3.06
5544 9741 0.890542 AAGGCGCTCAAAGCACATCA 60.891 50.000 7.64 0.00 42.58 3.07
5546 9743 0.524816 GGCGCTCAAAGCACATCATG 60.525 55.000 7.64 0.00 42.58 3.07
5548 9745 0.524816 CGCTCAAAGCACATCATGGC 60.525 55.000 0.00 0.00 42.58 4.40
5641 9851 2.100631 GTCGCTTGTAGCATGGCGT 61.101 57.895 10.76 0.00 46.37 5.68
5665 9875 0.042188 CTCCGTCGCAACACAACTTG 60.042 55.000 0.00 0.00 0.00 3.16
5686 9896 0.807496 GCACTGGAAGCATGTTCTCC 59.193 55.000 0.00 0.00 37.60 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.505922 CACACACACACACACAAACTTTTT 59.494 37.500 0.00 0.00 0.00 1.94
85 86 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
167 194 1.118356 TCAAATTGCCCACACACCCC 61.118 55.000 0.00 0.00 0.00 4.95
204 231 4.422073 TCCGCTTGAGATAATGGATTGT 57.578 40.909 0.00 0.00 0.00 2.71
205 232 7.621428 AATATCCGCTTGAGATAATGGATTG 57.379 36.000 0.00 0.00 37.41 2.67
213 240 4.733850 CGCACTAATATCCGCTTGAGATA 58.266 43.478 0.00 0.00 0.00 1.98
228 255 2.099141 ATCAAGAGCAAGCGCACTAA 57.901 45.000 11.47 0.00 38.19 2.24
229 256 2.099141 AATCAAGAGCAAGCGCACTA 57.901 45.000 11.47 0.00 38.19 2.74
339 369 8.113173 TGTGTTTTATTTATAAAGCGGGTCTT 57.887 30.769 3.94 0.00 36.59 3.01
354 384 6.042143 GGATGATTGGCGATTGTGTTTTATT 58.958 36.000 0.00 0.00 0.00 1.40
360 390 2.127271 TGGATGATTGGCGATTGTGT 57.873 45.000 0.00 0.00 0.00 3.72
368 398 6.165577 ACTGTTTGTATTTTGGATGATTGGC 58.834 36.000 0.00 0.00 0.00 4.52
373 403 9.906660 GTATTGAACTGTTTGTATTTTGGATGA 57.093 29.630 0.00 0.00 0.00 2.92
443 473 3.772853 TTCAAGTGCTGCTGCCCGT 62.773 57.895 13.47 0.00 38.71 5.28
444 474 2.974489 CTTCAAGTGCTGCTGCCCG 61.974 63.158 13.47 0.00 38.71 6.13
459 489 0.250295 GCTTTTGGGTTTGGGGCTTC 60.250 55.000 0.00 0.00 0.00 3.86
489 519 1.871418 ACTGCTCCTGCTCCTGATTA 58.129 50.000 0.00 0.00 40.48 1.75
505 535 5.240623 TGGTTTTATGCAGTAGTGGAAACTG 59.759 40.000 0.00 0.00 45.80 3.16
506 536 5.240844 GTGGTTTTATGCAGTAGTGGAAACT 59.759 40.000 0.00 0.00 0.00 2.66
507 537 5.009210 TGTGGTTTTATGCAGTAGTGGAAAC 59.991 40.000 0.00 0.00 0.00 2.78
508 538 5.133941 TGTGGTTTTATGCAGTAGTGGAAA 58.866 37.500 0.00 0.00 0.00 3.13
568 598 8.988934 CCAATGTATGCAGTATATACGAAAAGT 58.011 33.333 7.23 0.00 34.51 2.66
569 599 8.988934 ACCAATGTATGCAGTATATACGAAAAG 58.011 33.333 7.23 0.00 34.51 2.27
570 600 8.769891 CACCAATGTATGCAGTATATACGAAAA 58.230 33.333 7.23 0.00 34.51 2.29
572 602 7.438564 ACACCAATGTATGCAGTATATACGAA 58.561 34.615 7.23 0.00 37.26 3.85
573 603 6.988522 ACACCAATGTATGCAGTATATACGA 58.011 36.000 7.23 0.00 37.26 3.43
574 604 6.310467 GGACACCAATGTATGCAGTATATACG 59.690 42.308 7.23 4.16 39.95 3.06
575 605 7.158697 TGGACACCAATGTATGCAGTATATAC 58.841 38.462 4.60 4.60 39.95 1.47
576 606 7.309770 TGGACACCAATGTATGCAGTATATA 57.690 36.000 0.00 0.00 39.95 0.86
577 607 6.186420 TGGACACCAATGTATGCAGTATAT 57.814 37.500 0.00 0.00 39.95 0.86
622 652 6.543831 ACAATCTTTGGTAGATGACAATAGCC 59.456 38.462 0.00 0.00 42.90 3.93
645 780 8.888579 TTTTTGTCTTTTTCTGGTTTTGTACA 57.111 26.923 0.00 0.00 0.00 2.90
703 856 7.710907 GCCATCTACATATCGCCATATCTAAAA 59.289 37.037 0.00 0.00 0.00 1.52
704 857 7.210174 GCCATCTACATATCGCCATATCTAAA 58.790 38.462 0.00 0.00 0.00 1.85
834 2097 3.850098 AACTTGCGGCCCAGTGGAG 62.850 63.158 11.95 0.57 0.00 3.86
837 2100 2.336088 CAAACTTGCGGCCCAGTG 59.664 61.111 0.00 0.00 0.00 3.66
869 2132 1.269448 TCGCGGTTTCGGTATATACCC 59.731 52.381 23.49 11.05 43.51 3.69
916 2179 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
919 2182 3.036959 GGAGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1044 3643 0.111832 TGGTGTCGGTGTAGGTCTCT 59.888 55.000 0.00 0.00 0.00 3.10
1632 4245 0.388520 CAAGCTCGGTGTCATCGACA 60.389 55.000 3.50 0.00 40.50 4.35
2052 4665 2.094675 ACAACATCAGCATACCCAAGC 58.905 47.619 0.00 0.00 0.00 4.01
2069 4700 1.040646 AGCAGACACTTCCTCGACAA 58.959 50.000 0.00 0.00 0.00 3.18
2070 4701 0.315251 CAGCAGACACTTCCTCGACA 59.685 55.000 0.00 0.00 0.00 4.35
2071 4702 0.389166 CCAGCAGACACTTCCTCGAC 60.389 60.000 0.00 0.00 0.00 4.20
2072 4703 0.539669 TCCAGCAGACACTTCCTCGA 60.540 55.000 0.00 0.00 0.00 4.04
2073 4704 0.108898 CTCCAGCAGACACTTCCTCG 60.109 60.000 0.00 0.00 0.00 4.63
2074 4705 1.261480 TCTCCAGCAGACACTTCCTC 58.739 55.000 0.00 0.00 0.00 3.71
2075 4706 1.554160 CATCTCCAGCAGACACTTCCT 59.446 52.381 0.00 0.00 32.26 3.36
2076 4707 1.406614 CCATCTCCAGCAGACACTTCC 60.407 57.143 0.00 0.00 32.26 3.46
2077 4708 2.011046 GCCATCTCCAGCAGACACTTC 61.011 57.143 0.00 0.00 32.26 3.01
2078 4709 0.035630 GCCATCTCCAGCAGACACTT 60.036 55.000 0.00 0.00 32.26 3.16
2079 4710 1.196766 TGCCATCTCCAGCAGACACT 61.197 55.000 0.00 0.00 32.26 3.55
2080 4711 0.321919 TTGCCATCTCCAGCAGACAC 60.322 55.000 0.00 0.00 40.73 3.67
2081 4712 0.035725 CTTGCCATCTCCAGCAGACA 60.036 55.000 0.00 0.00 40.73 3.41
2082 4713 0.251354 TCTTGCCATCTCCAGCAGAC 59.749 55.000 0.00 0.00 40.73 3.51
2083 4714 1.210538 ATCTTGCCATCTCCAGCAGA 58.789 50.000 0.00 0.00 40.73 4.26
2084 4715 1.676529 CAATCTTGCCATCTCCAGCAG 59.323 52.381 0.00 0.00 40.73 4.24
2085 4716 1.005097 ACAATCTTGCCATCTCCAGCA 59.995 47.619 0.00 0.00 37.18 4.41
2086 4717 1.674962 GACAATCTTGCCATCTCCAGC 59.325 52.381 0.00 0.00 0.00 4.85
2115 4746 2.822637 CCCCATGTCCCTGATCCCG 61.823 68.421 0.00 0.00 0.00 5.14
2118 4749 0.400525 TCCTCCCCATGTCCCTGATC 60.401 60.000 0.00 0.00 0.00 2.92
2205 4836 0.465705 ACCTGATGACACATAGGGCG 59.534 55.000 0.00 0.00 34.60 6.13
2272 4907 5.251601 AGAAAAGCAGGACTACGATAGAC 57.748 43.478 0.00 0.00 41.38 2.59
2275 4910 5.198965 ACCTAGAAAAGCAGGACTACGATA 58.801 41.667 0.00 0.00 35.76 2.92
2278 4913 3.192844 TGACCTAGAAAAGCAGGACTACG 59.807 47.826 0.00 0.00 35.76 3.51
2303 4941 4.054780 TCACCCAAGTCGCTATATTCAC 57.945 45.455 0.00 0.00 0.00 3.18
2354 5016 9.317936 TGTTCAACAATGTTGTGCATATTTAAA 57.682 25.926 23.41 5.85 41.31 1.52
2435 5098 8.565896 TGACAATTTACTGCTATGAACAGATT 57.434 30.769 0.00 0.00 38.55 2.40
2446 5112 8.512138 GTTTATACCACTTGACAATTTACTGCT 58.488 33.333 0.00 0.00 0.00 4.24
2459 5125 8.211198 GAACAAATGTTCGTTTATACCACTTG 57.789 34.615 10.26 0.00 43.97 3.16
2540 5263 9.936329 AACAAAGGGATCCTATAATATTTGTGT 57.064 29.630 12.58 6.53 39.01 3.72
2560 5284 9.715121 TTACTCTACCAACCTACAATAACAAAG 57.285 33.333 0.00 0.00 0.00 2.77
2567 5291 6.717289 TGCATTTACTCTACCAACCTACAAT 58.283 36.000 0.00 0.00 0.00 2.71
2579 5303 7.985184 ACGTGATAGGAAATTGCATTTACTCTA 59.015 33.333 8.93 5.58 42.33 2.43
2580 5304 6.823689 ACGTGATAGGAAATTGCATTTACTCT 59.176 34.615 8.93 1.97 42.33 3.24
2581 5305 7.016361 ACGTGATAGGAAATTGCATTTACTC 57.984 36.000 8.93 0.00 42.33 2.59
2599 5340 4.034394 CAGTATATGTGCAAGCAACGTGAT 59.966 41.667 0.00 0.00 0.00 3.06
2660 5401 3.951037 TGTGGAAGCAACAACATAACAGT 59.049 39.130 0.00 0.00 0.00 3.55
2672 5413 1.004320 ACGGCGTATGTGGAAGCAA 60.004 52.632 12.58 0.00 0.00 3.91
2673 5414 1.447140 GACGGCGTATGTGGAAGCA 60.447 57.895 14.74 0.00 0.00 3.91
2674 5415 2.514013 CGACGGCGTATGTGGAAGC 61.514 63.158 14.74 0.00 0.00 3.86
2686 5427 2.127758 CGAAGTTGTTGCGACGGC 60.128 61.111 0.00 0.00 40.52 5.68
2721 5463 5.308825 GCAGCATATATAGTGGTCAAAGGT 58.691 41.667 0.00 0.00 0.00 3.50
2752 5506 3.643792 GAGTGAACCTATGCTCCCTATGT 59.356 47.826 0.00 0.00 0.00 2.29
2755 5509 2.092049 TCGAGTGAACCTATGCTCCCTA 60.092 50.000 0.00 0.00 0.00 3.53
2774 5528 3.443976 TCGGTGTCACACATAATCATCG 58.556 45.455 10.85 1.26 35.86 3.84
2776 5530 3.198068 GCTCGGTGTCACACATAATCAT 58.802 45.455 10.85 0.00 35.86 2.45
2992 5943 9.816354 ATTATTACCAACATAAAGCACCAAATC 57.184 29.630 0.00 0.00 0.00 2.17
3025 5977 9.393249 CGCTTACTCTTGTGAATTTAATTTGAA 57.607 29.630 0.00 0.00 0.00 2.69
3057 6036 3.149196 TGCTCAAAGGTCAAAGCCTAAG 58.851 45.455 0.00 0.00 38.03 2.18
3060 6039 1.959282 CTTGCTCAAAGGTCAAAGCCT 59.041 47.619 0.00 0.00 41.41 4.58
3061 6040 2.428888 CTTGCTCAAAGGTCAAAGCC 57.571 50.000 0.00 0.00 33.79 4.35
3148 6136 0.609662 GTGAAAATGGGCAGCCATGT 59.390 50.000 15.19 0.00 0.00 3.21
3150 6138 1.188863 GAGTGAAAATGGGCAGCCAT 58.811 50.000 15.19 1.84 0.00 4.40
3151 6139 1.243342 CGAGTGAAAATGGGCAGCCA 61.243 55.000 15.19 0.00 0.00 4.75
3153 6141 0.881118 TTCGAGTGAAAATGGGCAGC 59.119 50.000 0.00 0.00 0.00 5.25
3154 6142 2.813754 TCTTTCGAGTGAAAATGGGCAG 59.186 45.455 0.00 0.00 43.21 4.85
3155 6143 2.857483 TCTTTCGAGTGAAAATGGGCA 58.143 42.857 0.00 0.00 43.21 5.36
3157 6145 6.404734 CCCTATTTCTTTCGAGTGAAAATGGG 60.405 42.308 23.60 23.60 43.21 4.00
3158 6146 6.151144 ACCCTATTTCTTTCGAGTGAAAATGG 59.849 38.462 15.42 17.12 43.21 3.16
3159 6147 7.145932 ACCCTATTTCTTTCGAGTGAAAATG 57.854 36.000 15.42 11.77 43.21 2.32
3161 6149 7.576861 AAACCCTATTTCTTTCGAGTGAAAA 57.423 32.000 15.42 3.71 43.21 2.29
3162 6150 7.576861 AAAACCCTATTTCTTTCGAGTGAAA 57.423 32.000 14.31 14.31 41.69 2.69
3163 6151 7.067737 ACAAAAACCCTATTTCTTTCGAGTGAA 59.932 33.333 0.00 0.00 0.00 3.18
3164 6152 6.544564 ACAAAAACCCTATTTCTTTCGAGTGA 59.455 34.615 0.00 0.00 0.00 3.41
3165 6153 6.636850 CACAAAAACCCTATTTCTTTCGAGTG 59.363 38.462 0.00 0.00 0.00 3.51
3166 6154 6.734871 GCACAAAAACCCTATTTCTTTCGAGT 60.735 38.462 0.00 0.00 0.00 4.18
3167 6155 5.629435 GCACAAAAACCCTATTTCTTTCGAG 59.371 40.000 0.00 0.00 0.00 4.04
3169 6157 5.285651 TGCACAAAAACCCTATTTCTTTCG 58.714 37.500 0.00 0.00 0.00 3.46
3170 6158 6.512297 TCTGCACAAAAACCCTATTTCTTTC 58.488 36.000 0.00 0.00 0.00 2.62
3172 6160 6.478512 TTCTGCACAAAAACCCTATTTCTT 57.521 33.333 0.00 0.00 0.00 2.52
3194 6186 7.391833 GTGTCAGAAGAAAGGATGGAGTAAATT 59.608 37.037 0.00 0.00 0.00 1.82
3195 6187 6.881602 GTGTCAGAAGAAAGGATGGAGTAAAT 59.118 38.462 0.00 0.00 0.00 1.40
3249 6241 1.412710 AGAGCGAGAGAGAGAGTCGAT 59.587 52.381 0.00 0.00 35.70 3.59
3250 6242 0.821517 AGAGCGAGAGAGAGAGTCGA 59.178 55.000 0.00 0.00 35.70 4.20
3288 6280 2.688446 CCATCAGATTCAAGCACTGCAT 59.312 45.455 3.30 0.00 0.00 3.96
3328 6320 2.942796 CGTGGTGCCCTACTGCAGA 61.943 63.158 23.35 2.95 43.02 4.26
3420 6419 3.073274 GGAACATCCTAACTTGCCAGT 57.927 47.619 0.00 0.00 32.53 4.00
3432 6431 5.599999 TCTTGCTAGAACTAGGAACATCC 57.400 43.478 10.79 0.00 38.34 3.51
3439 6438 3.827008 TGCCATCTTGCTAGAACTAGG 57.173 47.619 0.99 3.78 33.20 3.02
3515 6514 3.564235 TGCATGCAACTCAAGATTGTC 57.436 42.857 20.30 0.00 0.00 3.18
3539 6586 8.443953 ACTAGCCAAATTGACTTTGATATCTC 57.556 34.615 3.98 0.00 45.96 2.75
3609 6714 4.062991 ACTTACGAACTTTACCAAGCTGG 58.937 43.478 0.00 0.00 45.02 4.85
3625 6730 5.291971 ACCAACAAACCTACTACACTTACG 58.708 41.667 0.00 0.00 0.00 3.18
3629 6734 6.463472 GGACTAACCAACAAACCTACTACACT 60.463 42.308 0.00 0.00 38.79 3.55
3630 6735 5.698089 GGACTAACCAACAAACCTACTACAC 59.302 44.000 0.00 0.00 38.79 2.90
3631 6736 5.603813 AGGACTAACCAACAAACCTACTACA 59.396 40.000 0.00 0.00 42.04 2.74
3633 6738 7.854166 TTAGGACTAACCAACAAACCTACTA 57.146 36.000 0.00 0.00 42.04 1.82
3634 6739 6.752285 TTAGGACTAACCAACAAACCTACT 57.248 37.500 0.00 0.00 42.04 2.57
3695 6803 3.243336 GGTCTGAAGCTTACACACTACG 58.757 50.000 0.00 0.00 0.00 3.51
3703 6811 2.832733 ACACTAGGGGTCTGAAGCTTAC 59.167 50.000 0.00 0.00 0.00 2.34
3717 7100 5.178061 TCTCACATAAACATGCACACTAGG 58.822 41.667 0.00 0.00 0.00 3.02
3748 7134 1.825474 CACAGACCCCTTCGTCACTAT 59.175 52.381 0.00 0.00 35.07 2.12
3749 7135 1.254026 CACAGACCCCTTCGTCACTA 58.746 55.000 0.00 0.00 35.07 2.74
3764 7150 8.624701 CTTTATAAAGGAAATGATGCACACAG 57.375 34.615 16.19 0.00 32.40 3.66
3785 7185 3.333680 AGCTCCCACCAGAATTTCCTTTA 59.666 43.478 0.00 0.00 0.00 1.85
3830 7230 7.225931 GTCATCGTAATATCCAAAAGGCAGTAA 59.774 37.037 0.00 0.00 0.00 2.24
3857 7293 5.627182 ATTGACAGGCATAAGATGAGACT 57.373 39.130 0.00 0.00 0.00 3.24
3859 7295 8.677300 GTTAAAATTGACAGGCATAAGATGAGA 58.323 33.333 0.00 0.00 0.00 3.27
3915 7557 8.134895 TGTTTCTTCGTAAAATTCAGAAGCAAT 58.865 29.630 0.00 0.00 39.72 3.56
3955 7601 5.614324 AAAAAGGCCTGTAAAAAGAGCTT 57.386 34.783 5.69 0.00 0.00 3.74
4038 7702 5.746065 GCTCAAGGCCTATACATTGGTATGT 60.746 44.000 5.16 0.00 40.54 2.29
4045 7709 6.192970 ACTTATGCTCAAGGCCTATACATT 57.807 37.500 5.16 0.00 40.92 2.71
4077 7741 7.920738 AGCAAGAATAATAATTTCACGAGGAC 58.079 34.615 0.00 0.00 0.00 3.85
4090 7754 6.179756 ACACACACCATGAGCAAGAATAATA 58.820 36.000 0.00 0.00 0.00 0.98
4111 7775 7.222611 ACAAAATGATACACAAGCTTCAAACAC 59.777 33.333 0.00 0.00 0.00 3.32
4112 7776 7.222417 CACAAAATGATACACAAGCTTCAAACA 59.778 33.333 0.00 0.00 0.00 2.83
4113 7777 7.306749 CCACAAAATGATACACAAGCTTCAAAC 60.307 37.037 0.00 0.00 0.00 2.93
4117 7781 5.772521 ACCACAAAATGATACACAAGCTTC 58.227 37.500 0.00 0.00 0.00 3.86
4175 7933 9.946165 GAGTACATTTTAAGCTAAAAACAGTGT 57.054 29.630 0.00 0.00 40.62 3.55
4176 7934 9.394477 GGAGTACATTTTAAGCTAAAAACAGTG 57.606 33.333 0.00 0.00 40.62 3.66
4179 7937 8.700439 AGGGAGTACATTTTAAGCTAAAAACA 57.300 30.769 0.00 0.00 40.62 2.83
4196 7959 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
4197 7960 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4198 7961 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4199 7962 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4200 7963 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4201 7964 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4202 7965 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4203 7966 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4204 7967 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
4205 7968 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
4206 7969 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
4207 7970 4.159135 TCTGTAGGACAAGTATTTCCGGAC 59.841 45.833 1.83 0.00 36.95 4.79
4208 7971 4.346730 TCTGTAGGACAAGTATTTCCGGA 58.653 43.478 0.00 0.00 36.95 5.14
4209 7972 4.730949 TCTGTAGGACAAGTATTTCCGG 57.269 45.455 0.00 0.00 36.95 5.14
4210 7973 5.050490 CCATCTGTAGGACAAGTATTTCCG 58.950 45.833 0.00 0.00 36.95 4.30
4211 7974 5.990668 ACCATCTGTAGGACAAGTATTTCC 58.009 41.667 0.00 0.00 0.00 3.13
4212 7975 6.879458 ACAACCATCTGTAGGACAAGTATTTC 59.121 38.462 0.00 0.00 0.00 2.17
4213 7976 6.779860 ACAACCATCTGTAGGACAAGTATTT 58.220 36.000 0.00 0.00 0.00 1.40
4214 7977 6.374417 ACAACCATCTGTAGGACAAGTATT 57.626 37.500 0.00 0.00 0.00 1.89
4215 7978 7.565398 AGATACAACCATCTGTAGGACAAGTAT 59.435 37.037 0.00 0.00 35.32 2.12
4216 7979 6.895756 AGATACAACCATCTGTAGGACAAGTA 59.104 38.462 0.00 0.00 35.32 2.24
4217 7980 5.721960 AGATACAACCATCTGTAGGACAAGT 59.278 40.000 0.00 0.00 35.32 3.16
4218 7981 6.227298 AGATACAACCATCTGTAGGACAAG 57.773 41.667 0.00 0.00 35.32 3.16
4219 7982 7.068348 GTCTAGATACAACCATCTGTAGGACAA 59.932 40.741 0.00 0.00 35.99 3.18
4220 7983 6.546403 GTCTAGATACAACCATCTGTAGGACA 59.454 42.308 0.00 0.00 35.99 4.02
4221 7984 6.773685 AGTCTAGATACAACCATCTGTAGGAC 59.226 42.308 0.00 0.00 35.99 3.85
4222 7985 6.912426 AGTCTAGATACAACCATCTGTAGGA 58.088 40.000 0.00 0.00 35.99 2.94
4223 7986 7.589958 AAGTCTAGATACAACCATCTGTAGG 57.410 40.000 0.00 0.00 35.99 3.18
4265 8028 9.699410 TGTCCTAGAAATGAATAAAATGGATGT 57.301 29.630 0.00 0.00 0.00 3.06
4267 8030 9.359653 CCTGTCCTAGAAATGAATAAAATGGAT 57.640 33.333 0.00 0.00 0.00 3.41
4268 8031 8.336235 ACCTGTCCTAGAAATGAATAAAATGGA 58.664 33.333 0.00 0.00 0.00 3.41
4269 8032 8.525290 ACCTGTCCTAGAAATGAATAAAATGG 57.475 34.615 0.00 0.00 0.00 3.16
4274 8037 9.847224 GGAAATACCTGTCCTAGAAATGAATAA 57.153 33.333 0.00 0.00 35.41 1.40
4275 8038 8.148351 CGGAAATACCTGTCCTAGAAATGAATA 58.852 37.037 0.00 0.00 36.31 1.75
4276 8039 6.992715 CGGAAATACCTGTCCTAGAAATGAAT 59.007 38.462 0.00 0.00 36.31 2.57
4277 8040 6.346096 CGGAAATACCTGTCCTAGAAATGAA 58.654 40.000 0.00 0.00 36.31 2.57
4278 8041 5.163343 CCGGAAATACCTGTCCTAGAAATGA 60.163 44.000 0.00 0.00 36.31 2.57
4279 8042 5.057149 CCGGAAATACCTGTCCTAGAAATG 58.943 45.833 0.00 0.00 36.31 2.32
4280 8043 4.966805 TCCGGAAATACCTGTCCTAGAAAT 59.033 41.667 0.00 0.00 36.31 2.17
4281 8044 4.161001 GTCCGGAAATACCTGTCCTAGAAA 59.839 45.833 5.23 0.00 36.31 2.52
4282 8045 3.703052 GTCCGGAAATACCTGTCCTAGAA 59.297 47.826 5.23 0.00 36.31 2.10
4283 8046 3.294214 GTCCGGAAATACCTGTCCTAGA 58.706 50.000 5.23 0.00 36.31 2.43
4284 8047 2.034305 CGTCCGGAAATACCTGTCCTAG 59.966 54.545 5.23 0.00 36.31 3.02
4285 8048 2.026641 CGTCCGGAAATACCTGTCCTA 58.973 52.381 5.23 0.00 36.31 2.94
4286 8049 0.822164 CGTCCGGAAATACCTGTCCT 59.178 55.000 5.23 0.00 36.31 3.85
4287 8050 0.179092 CCGTCCGGAAATACCTGTCC 60.179 60.000 5.23 0.00 37.50 4.02
4288 8051 0.819582 TCCGTCCGGAAATACCTGTC 59.180 55.000 5.23 0.00 42.05 3.51
4289 8052 0.822164 CTCCGTCCGGAAATACCTGT 59.178 55.000 5.23 0.00 44.66 4.00
4290 8053 0.104304 CCTCCGTCCGGAAATACCTG 59.896 60.000 5.23 0.00 44.66 4.00
4291 8054 1.047034 CCCTCCGTCCGGAAATACCT 61.047 60.000 5.23 0.00 44.66 3.08
4292 8055 1.444672 CCCTCCGTCCGGAAATACC 59.555 63.158 5.23 0.00 44.66 2.73
4293 8056 1.444672 CCCCTCCGTCCGGAAATAC 59.555 63.158 5.23 0.00 44.66 1.89
4294 8057 1.763256 CCCCCTCCGTCCGGAAATA 60.763 63.158 5.23 0.00 44.66 1.40
4295 8058 2.534594 TACCCCCTCCGTCCGGAAAT 62.535 60.000 5.23 0.00 44.66 2.17
4296 8059 2.534594 ATACCCCCTCCGTCCGGAAA 62.535 60.000 5.23 0.00 44.66 3.13
4297 8060 2.534594 AATACCCCCTCCGTCCGGAA 62.535 60.000 5.23 0.00 44.66 4.30
4298 8061 1.654137 TAATACCCCCTCCGTCCGGA 61.654 60.000 0.00 0.00 42.90 5.14
4299 8062 0.543646 ATAATACCCCCTCCGTCCGG 60.544 60.000 0.00 0.00 0.00 5.14
4300 8063 1.345063 AATAATACCCCCTCCGTCCG 58.655 55.000 0.00 0.00 0.00 4.79
4301 8064 2.977580 AGAAATAATACCCCCTCCGTCC 59.022 50.000 0.00 0.00 0.00 4.79
4302 8065 4.102054 TGAAGAAATAATACCCCCTCCGTC 59.898 45.833 0.00 0.00 0.00 4.79
4303 8066 4.042174 TGAAGAAATAATACCCCCTCCGT 58.958 43.478 0.00 0.00 0.00 4.69
4304 8067 4.102681 ACTGAAGAAATAATACCCCCTCCG 59.897 45.833 0.00 0.00 0.00 4.63
4305 8068 5.104067 ACACTGAAGAAATAATACCCCCTCC 60.104 44.000 0.00 0.00 0.00 4.30
4306 8069 6.002653 ACACTGAAGAAATAATACCCCCTC 57.997 41.667 0.00 0.00 0.00 4.30
4307 8070 6.217693 AGAACACTGAAGAAATAATACCCCCT 59.782 38.462 0.00 0.00 0.00 4.79
4308 8071 6.318900 CAGAACACTGAAGAAATAATACCCCC 59.681 42.308 0.00 0.00 33.94 5.40
4309 8072 7.110155 TCAGAACACTGAAGAAATAATACCCC 58.890 38.462 0.00 0.00 37.66 4.95
4310 8073 8.738645 ATCAGAACACTGAAGAAATAATACCC 57.261 34.615 4.09 0.00 42.71 3.69
4311 8074 8.831550 GGATCAGAACACTGAAGAAATAATACC 58.168 37.037 4.09 0.00 42.71 2.73
4340 8105 3.124636 ACCTTCATAAAAGTAAGCACGCG 59.875 43.478 3.53 3.53 0.00 6.01
4406 8171 6.532657 CCAGTTGCATTGACATTTCTATTTCC 59.467 38.462 0.00 0.00 0.00 3.13
4487 8252 1.078759 GGATGACCTCAAGTGCGTCG 61.079 60.000 0.00 0.00 0.00 5.12
4490 8255 4.208632 GGGATGACCTCAAGTGCG 57.791 61.111 0.00 0.00 35.85 5.34
4961 8765 7.976135 AATCTTGCTAGATACCTATGCTTTG 57.024 36.000 11.15 0.00 40.26 2.77
4981 8785 5.598005 TCCACCAAACATCTCAAACAAATCT 59.402 36.000 0.00 0.00 0.00 2.40
5019 8842 1.419374 CCACGAAGTTGAGAACGAGG 58.581 55.000 0.00 0.00 41.61 4.63
5021 8844 0.599204 GCCCACGAAGTTGAGAACGA 60.599 55.000 0.00 0.00 41.61 3.85
5022 8845 0.600255 AGCCCACGAAGTTGAGAACG 60.600 55.000 0.00 0.00 41.61 3.95
5023 8846 2.450609 TAGCCCACGAAGTTGAGAAC 57.549 50.000 0.00 0.00 41.61 3.01
5053 8876 2.159599 ACTAACTCGACACGAACCGATC 60.160 50.000 0.00 0.00 34.74 3.69
5054 8877 1.808945 ACTAACTCGACACGAACCGAT 59.191 47.619 0.00 0.00 34.74 4.18
5057 8880 2.470257 CACAACTAACTCGACACGAACC 59.530 50.000 0.00 0.00 34.74 3.62
5058 8881 3.061403 CACACAACTAACTCGACACGAAC 60.061 47.826 0.00 0.00 34.74 3.95
5059 8882 3.110358 CACACAACTAACTCGACACGAA 58.890 45.455 0.00 0.00 34.74 3.85
5060 8883 2.723209 CACACAACTAACTCGACACGA 58.277 47.619 0.00 0.00 0.00 4.35
5063 8886 2.198406 GTGCACACAACTAACTCGACA 58.802 47.619 13.17 0.00 0.00 4.35
5076 8902 9.793252 ATAAGAAATAATCAGATTTGTGCACAC 57.207 29.630 21.56 8.61 0.00 3.82
5107 8934 3.474798 ACAGGGGAGACAGTGAGATAA 57.525 47.619 0.00 0.00 0.00 1.75
5116 8943 1.003118 CCGAAATCAACAGGGGAGACA 59.997 52.381 0.00 0.00 0.00 3.41
5127 8954 8.210946 ACTTGATTATATGAGGTCCGAAATCAA 58.789 33.333 0.00 0.00 38.71 2.57
5144 8971 9.533831 AAAAACTTCATCACCCTACTTGATTAT 57.466 29.630 0.00 0.00 30.98 1.28
5145 8972 8.792633 CAAAAACTTCATCACCCTACTTGATTA 58.207 33.333 0.00 0.00 30.98 1.75
5159 8986 7.908230 TCAGCAAACAAATCAAAAACTTCATC 58.092 30.769 0.00 0.00 0.00 2.92
5162 8989 7.524294 TCTCAGCAAACAAATCAAAAACTTC 57.476 32.000 0.00 0.00 0.00 3.01
5188 9015 6.293298 GGCATCAGTTATCATCAGACATTGTC 60.293 42.308 8.82 8.82 0.00 3.18
5195 9022 4.162888 AGTGTGGCATCAGTTATCATCAGA 59.837 41.667 0.00 0.00 0.00 3.27
5215 9056 1.345415 AGAAATGCAAGGGCCAAAGTG 59.655 47.619 6.18 0.00 40.13 3.16
5220 9061 2.300956 TGTAAGAAATGCAAGGGCCA 57.699 45.000 6.18 0.00 40.13 5.36
5225 9066 4.853196 CCGTGTGATTGTAAGAAATGCAAG 59.147 41.667 0.00 0.00 37.05 4.01
5228 9069 4.419522 ACCGTGTGATTGTAAGAAATGC 57.580 40.909 0.00 0.00 0.00 3.56
5237 9078 0.106918 ACCACCAACCGTGTGATTGT 60.107 50.000 0.00 0.00 41.26 2.71
5259 9100 6.806249 GCAAGTAATTGTGCATTTAAGCTACA 59.194 34.615 4.65 0.00 40.58 2.74
5266 9107 6.588719 AAGGAGCAAGTAATTGTGCATTTA 57.411 33.333 4.65 0.00 43.42 1.40
5279 9120 3.567164 CAGACATGACAAAAGGAGCAAGT 59.433 43.478 0.00 0.00 0.00 3.16
5280 9121 3.057736 CCAGACATGACAAAAGGAGCAAG 60.058 47.826 0.00 0.00 0.00 4.01
5283 9124 1.200948 GCCAGACATGACAAAAGGAGC 59.799 52.381 0.00 0.00 0.00 4.70
5284 9125 2.507484 TGCCAGACATGACAAAAGGAG 58.493 47.619 0.00 0.00 0.00 3.69
5324 9168 3.546271 GGCACTTCAGACGTTTTTGTTTC 59.454 43.478 0.00 0.00 0.00 2.78
5329 9173 2.752903 ACTTGGCACTTCAGACGTTTTT 59.247 40.909 0.00 0.00 0.00 1.94
5334 9178 1.571460 GCACTTGGCACTTCAGACG 59.429 57.895 0.00 0.00 43.97 4.18
5359 9203 7.405292 TGAATGATTTCACATCCTCCTACTTT 58.595 34.615 0.00 0.00 36.94 2.66
5465 9414 2.436646 ATGCTTTGCCGGACGAGG 60.437 61.111 5.05 0.00 0.00 4.63
5499 9657 2.271800 GACGGCATCAACTAGGACAAG 58.728 52.381 0.00 0.00 0.00 3.16
5523 9720 2.429739 GTGCTTTGAGCGCCTTGC 60.430 61.111 2.29 2.31 46.26 4.01
5529 9726 0.524816 GCCATGATGTGCTTTGAGCG 60.525 55.000 0.00 0.00 46.26 5.03
5533 9730 2.159338 GGTACTGCCATGATGTGCTTTG 60.159 50.000 0.00 1.96 37.17 2.77
5534 9731 2.094675 GGTACTGCCATGATGTGCTTT 58.905 47.619 0.00 0.00 37.17 3.51
5541 9738 0.250467 GCCATCGGTACTGCCATGAT 60.250 55.000 5.20 0.00 36.97 2.45
5543 9740 1.893808 GGCCATCGGTACTGCCATG 60.894 63.158 0.00 0.00 43.46 3.66
5544 9741 2.510906 GGCCATCGGTACTGCCAT 59.489 61.111 0.00 0.00 43.46 4.40
5546 9743 2.513897 GTGGCCATCGGTACTGCC 60.514 66.667 9.72 0.00 44.27 4.85
5548 9745 2.189521 GGGTGGCCATCGGTACTG 59.810 66.667 9.72 0.00 0.00 2.74
5665 9875 1.736681 GAGAACATGCTTCCAGTGCTC 59.263 52.381 0.00 0.00 31.26 4.26
5686 9896 1.136029 GCGACCATCGATCGGTACTAG 60.136 57.143 16.41 4.81 43.74 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.