Multiple sequence alignment - TraesCS7A01G425900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G425900 chr7A 100.000 7369 0 0 1 7369 619037498 619030130 0.000000e+00 13609.0
1 TraesCS7A01G425900 chr7A 92.657 926 68 0 5475 6400 618681901 618680976 0.000000e+00 1334.0
2 TraesCS7A01G425900 chr7A 86.632 1152 141 7 4323 5472 618683077 618681937 0.000000e+00 1262.0
3 TraesCS7A01G425900 chr7A 97.842 278 6 0 7075 7352 619025225 619024948 1.440000e-131 481.0
4 TraesCS7A01G425900 chr7A 85.986 421 45 6 6545 6955 618680876 618680460 8.780000e-119 438.0
5 TraesCS7A01G425900 chr7A 93.373 166 11 0 4009 4174 451519972 451519807 5.710000e-61 246.0
6 TraesCS7A01G425900 chr7A 92.262 168 12 1 4009 4175 494786990 494786823 3.440000e-58 237.0
7 TraesCS7A01G425900 chr7A 88.608 158 14 4 2431 2588 109818441 109818288 9.760000e-44 189.0
8 TraesCS7A01G425900 chr7A 100.000 42 0 0 376 417 619037030 619036989 2.200000e-10 78.7
9 TraesCS7A01G425900 chr7A 100.000 42 0 0 469 510 619037123 619037082 2.200000e-10 78.7
10 TraesCS7A01G425900 chr7D 96.840 2911 80 9 2568 5472 537676108 537673204 0.000000e+00 4855.0
11 TraesCS7A01G425900 chr7D 97.493 1675 38 3 774 2446 537677777 537676105 0.000000e+00 2857.0
12 TraesCS7A01G425900 chr7D 93.793 1611 58 24 5475 7074 537673168 537671589 0.000000e+00 2383.0
13 TraesCS7A01G425900 chr7D 93.133 233 15 1 245 476 537678060 537677828 2.550000e-89 340.0
14 TraesCS7A01G425900 chr7D 93.373 166 11 0 4009 4174 397554916 397555081 5.710000e-61 246.0
15 TraesCS7A01G425900 chr7D 91.667 168 13 1 77 244 537678257 537678091 1.600000e-56 231.0
16 TraesCS7A01G425900 chr7D 100.000 42 0 0 469 510 537677928 537677887 2.200000e-10 78.7
17 TraesCS7A01G425900 chr7D 95.455 44 1 1 1 44 537678514 537678472 1.330000e-07 69.4
18 TraesCS7A01G425900 chr7B 95.153 2414 77 12 41 2446 580164379 580161998 0.000000e+00 3773.0
19 TraesCS7A01G425900 chr7B 96.335 1446 40 11 2568 4008 580162001 580160564 0.000000e+00 2364.0
20 TraesCS7A01G425900 chr7B 98.618 1302 15 3 4172 5472 580160563 580159264 0.000000e+00 2302.0
21 TraesCS7A01G425900 chr7B 97.432 662 12 2 5475 6136 580159228 580158572 0.000000e+00 1123.0
22 TraesCS7A01G425900 chr7B 94.408 608 24 5 6133 6737 580156159 580155559 0.000000e+00 926.0
23 TraesCS7A01G425900 chr7B 90.566 530 23 4 2440 2962 489143490 489143999 0.000000e+00 676.0
24 TraesCS7A01G425900 chr7B 94.886 176 8 1 2961 3136 489144160 489144334 2.620000e-69 274.0
25 TraesCS7A01G425900 chr7B 92.169 166 13 0 4009 4174 401532561 401532726 1.240000e-57 235.0
26 TraesCS7A01G425900 chr7B 100.000 42 0 0 469 510 580164042 580164001 2.200000e-10 78.7
27 TraesCS7A01G425900 chr1D 95.365 561 20 2 2576 3136 478349289 478348735 0.000000e+00 887.0
28 TraesCS7A01G425900 chr1D 93.899 377 19 3 2568 2944 129681109 129681481 3.860000e-157 566.0
29 TraesCS7A01G425900 chr1D 90.805 348 22 6 2568 2909 416746940 416746597 2.420000e-124 457.0
30 TraesCS7A01G425900 chr1D 93.310 284 15 4 7075 7355 30423480 30423198 4.110000e-112 416.0
31 TraesCS7A01G425900 chr1D 95.276 127 6 0 2443 2569 119306295 119306421 1.250000e-47 202.0
32 TraesCS7A01G425900 chr1D 90.411 146 8 2 2990 3135 129681478 129681617 3.510000e-43 187.0
33 TraesCS7A01G425900 chr1D 90.141 142 6 4 3003 3136 416731485 416731344 2.110000e-40 178.0
34 TraesCS7A01G425900 chr1D 100.000 74 0 0 2989 3062 416731619 416731546 3.590000e-28 137.0
35 TraesCS7A01G425900 chr5D 95.070 568 18 3 2568 3135 520967537 520968094 0.000000e+00 885.0
36 TraesCS7A01G425900 chr5D 93.624 298 15 4 7075 7369 292136531 292136827 6.790000e-120 442.0
37 TraesCS7A01G425900 chr5D 73.931 725 177 9 5475 6193 500137624 500136906 1.570000e-71 281.0
38 TraesCS7A01G425900 chr5D 76.549 226 51 2 5247 5471 500132720 500132496 1.000000e-23 122.0
39 TraesCS7A01G425900 chr4D 91.948 385 12 3 2729 3113 347513452 347513087 8.470000e-144 521.0
40 TraesCS7A01G425900 chr4D 100.000 30 0 0 5425 5454 2999756 2999785 1.000000e-03 56.5
41 TraesCS7A01G425900 chr3A 97.966 295 6 0 7075 7369 136562822 136562528 5.100000e-141 512.0
42 TraesCS7A01G425900 chr3A 97.849 279 6 0 7075 7353 136535113 136534835 4.000000e-132 483.0
43 TraesCS7A01G425900 chr3A 96.786 280 6 2 7075 7353 13552788 13553065 1.450000e-126 464.0
44 TraesCS7A01G425900 chr3A 76.064 564 121 12 5475 6031 738502990 738502434 1.570000e-71 281.0
45 TraesCS7A01G425900 chr3A 75.709 564 123 12 5475 6031 738677661 738677105 3.390000e-68 270.0
46 TraesCS7A01G425900 chr3A 92.683 164 12 0 4006 4169 600921019 600920856 3.440000e-58 237.0
47 TraesCS7A01G425900 chr1A 96.194 289 8 2 7074 7359 15434785 15434497 3.110000e-128 470.0
48 TraesCS7A01G425900 chr1B 94.966 298 10 5 7075 7369 675907239 675907534 5.210000e-126 462.0
49 TraesCS7A01G425900 chr1B 93.594 281 13 5 7075 7352 675921198 675921476 1.480000e-111 414.0
50 TraesCS7A01G425900 chr5B 74.721 716 167 11 5475 6183 621477406 621476698 2.580000e-79 307.0
51 TraesCS7A01G425900 chr5B 74.468 705 168 10 5475 6173 621468645 621467947 2.010000e-75 294.0
52 TraesCS7A01G425900 chr5B 76.549 226 51 2 5247 5471 621468906 621468682 1.000000e-23 122.0
53 TraesCS7A01G425900 chrUn 76.125 511 115 5 5475 5981 42528811 42529318 2.040000e-65 261.0
54 TraesCS7A01G425900 chr5A 91.429 175 13 2 4003 4175 320214236 320214410 9.560000e-59 239.0
55 TraesCS7A01G425900 chr3B 90.608 181 15 2 3991 4169 781341784 781341604 9.560000e-59 239.0
56 TraesCS7A01G425900 chr3D 91.228 171 15 0 4009 4179 187836308 187836478 4.450000e-57 233.0
57 TraesCS7A01G425900 chr3D 92.086 139 10 1 2436 2574 7749975 7749838 2.100000e-45 195.0
58 TraesCS7A01G425900 chr6D 95.385 130 6 0 2442 2571 423681347 423681218 2.690000e-49 207.0
59 TraesCS7A01G425900 chr2B 91.724 145 11 1 2440 2583 423662678 423662822 4.510000e-47 200.0
60 TraesCS7A01G425900 chr4A 91.608 143 10 2 2432 2574 72408931 72409071 5.830000e-46 196.0
61 TraesCS7A01G425900 chr4A 92.647 136 10 0 2443 2578 680587669 680587804 5.830000e-46 196.0
62 TraesCS7A01G425900 chr2D 92.143 140 9 2 2443 2581 300887443 300887305 5.830000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G425900 chr7A 619030130 619037498 7368 True 4588.800000 13609 100.0000 1 7369 3 chr7A.!!$R6 7368
1 TraesCS7A01G425900 chr7A 618680460 618683077 2617 True 1011.333333 1334 88.4250 4323 6955 3 chr7A.!!$R5 2632
2 TraesCS7A01G425900 chr7D 537671589 537678514 6925 True 1544.871429 4855 95.4830 1 7074 7 chr7D.!!$R1 7073
3 TraesCS7A01G425900 chr7B 580155559 580164379 8820 True 1761.116667 3773 96.9910 41 6737 6 chr7B.!!$R1 6696
4 TraesCS7A01G425900 chr7B 489143490 489144334 844 False 475.000000 676 92.7260 2440 3136 2 chr7B.!!$F2 696
5 TraesCS7A01G425900 chr1D 478348735 478349289 554 True 887.000000 887 95.3650 2576 3136 1 chr1D.!!$R3 560
6 TraesCS7A01G425900 chr1D 129681109 129681617 508 False 376.500000 566 92.1550 2568 3135 2 chr1D.!!$F2 567
7 TraesCS7A01G425900 chr5D 520967537 520968094 557 False 885.000000 885 95.0700 2568 3135 1 chr5D.!!$F2 567
8 TraesCS7A01G425900 chr5D 500136906 500137624 718 True 281.000000 281 73.9310 5475 6193 1 chr5D.!!$R2 718
9 TraesCS7A01G425900 chr3A 738502434 738502990 556 True 281.000000 281 76.0640 5475 6031 1 chr3A.!!$R4 556
10 TraesCS7A01G425900 chr3A 738677105 738677661 556 True 270.000000 270 75.7090 5475 6031 1 chr3A.!!$R5 556
11 TraesCS7A01G425900 chr5B 621476698 621477406 708 True 307.000000 307 74.7210 5475 6183 1 chr5B.!!$R1 708
12 TraesCS7A01G425900 chr5B 621467947 621468906 959 True 208.000000 294 75.5085 5247 6173 2 chr5B.!!$R2 926
13 TraesCS7A01G425900 chrUn 42528811 42529318 507 False 261.000000 261 76.1250 5475 5981 1 chrUn.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 708 0.901827 TGAGTGGCCGCAATCTAAGA 59.098 50.000 20.59 0.0 0.00 2.10 F
491 710 0.905357 AGTGGCCGCAATCTAAGACT 59.095 50.000 20.59 0.0 0.00 3.24 F
1071 1290 0.947244 CGGCAGTTGTGAGAAGCTTT 59.053 50.000 0.00 0.0 0.00 3.51 F
1108 1327 1.144936 CCTCTGAACCGCCTGATCC 59.855 63.158 0.00 0.0 0.00 3.36 F
2131 2351 1.181786 AGGCTTCTTCGGTCTCTCTG 58.818 55.000 0.00 0.0 0.00 3.35 F
2133 2353 2.093106 GGCTTCTTCGGTCTCTCTGTA 58.907 52.381 0.00 0.0 0.00 2.74 F
2905 3139 2.609459 AGCAAACAACGACTCACTGAAG 59.391 45.455 0.00 0.0 0.00 3.02 F
3965 4367 3.546271 CAGCATTTTCATCTGATTGCGTG 59.454 43.478 5.81 2.6 33.12 5.34 F
4169 4571 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.0 0.00 3.51 F
5995 6432 0.904865 ACAGCTGAGTCGGGAATGGA 60.905 55.000 23.35 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2354 0.257328 TGTTGGTCAAGGCCTTGTCA 59.743 50.000 37.97 32.22 41.16 3.58 R
2407 2630 1.000955 GTCCCAGTAGTGTCACAGGTG 59.999 57.143 5.62 0.00 0.00 4.00 R
2731 2954 0.324614 TCGTGGAGTCATGTTGGCAT 59.675 50.000 0.00 0.00 35.32 4.40 R
3095 3492 3.664025 GCTATGCACGTGTTTTTCACTTC 59.336 43.478 18.38 0.00 44.16 3.01 R
3217 3614 1.404717 CCAGAGAACTACATGCGCAGT 60.405 52.381 18.32 16.36 0.00 4.40 R
3682 4083 2.167693 TCTCGGTTCACTCACAAACACT 59.832 45.455 0.00 0.00 0.00 3.55 R
4479 4882 0.322816 AGAGAACGGGCGGTGTAGTA 60.323 55.000 0.00 0.00 0.00 1.82 R
5187 5591 0.251742 ATGCCAAGGCCACTGCTTAA 60.252 50.000 5.01 0.00 41.09 1.85 R
6082 6519 1.066587 CCGTTGATCTCCTCCTCGC 59.933 63.158 0.00 0.00 0.00 5.03 R
6821 9688 0.036577 ACAGCAGAGCCAGACATGAC 60.037 55.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.314143 ACTGTGAAAATTGGAAAATGCATTAG 57.686 30.769 13.39 3.52 0.00 1.73
44 45 7.095144 TGTGAAAATTGGAAAATGCATTAGCTG 60.095 33.333 13.39 0.00 42.74 4.24
115 298 7.469456 CGAAAAAGAAGGAAGGTGGTTGAAATA 60.469 37.037 0.00 0.00 0.00 1.40
163 351 2.733301 CGCATGCCCACACCAAAA 59.267 55.556 13.15 0.00 0.00 2.44
251 469 4.875561 ATAAACGGAGATCCTAGCTTCC 57.124 45.455 0.00 0.00 0.00 3.46
261 480 6.183360 GGAGATCCTAGCTTCCAGTATTATCG 60.183 46.154 0.00 0.00 0.00 2.92
268 487 4.161565 AGCTTCCAGTATTATCGTTGTCCA 59.838 41.667 0.00 0.00 0.00 4.02
296 515 3.806625 AAATGAATACATGTGCCTGCC 57.193 42.857 9.11 0.00 36.79 4.85
310 529 1.133976 GCCTGCCTGGATTGAGTGTAT 60.134 52.381 0.00 0.00 38.35 2.29
434 653 2.289882 TGCTCAAGGTCAATGGAGTCAG 60.290 50.000 0.00 0.00 0.00 3.51
469 688 5.255397 TGGGTTAGAATGTTTCTGTCCAT 57.745 39.130 0.07 0.00 40.94 3.41
473 692 6.127897 GGGTTAGAATGTTTCTGTCCATTGAG 60.128 42.308 0.07 0.00 40.94 3.02
476 695 4.763793 AGAATGTTTCTGTCCATTGAGTGG 59.236 41.667 0.00 0.00 43.44 4.00
477 696 6.780712 AGAATGTTTCTGTCCATTGAGTGGC 61.781 44.000 0.00 0.00 42.51 5.01
483 702 3.607163 CCATTGAGTGGCCGCAAT 58.393 55.556 20.59 15.13 42.12 3.56
484 703 1.434696 CCATTGAGTGGCCGCAATC 59.565 57.895 20.59 8.96 42.12 2.67
485 704 1.033746 CCATTGAGTGGCCGCAATCT 61.034 55.000 20.59 0.00 42.12 2.40
486 705 1.667236 CATTGAGTGGCCGCAATCTA 58.333 50.000 20.59 5.58 38.79 1.98
487 706 2.016318 CATTGAGTGGCCGCAATCTAA 58.984 47.619 20.59 6.14 38.79 2.10
488 707 1.737838 TTGAGTGGCCGCAATCTAAG 58.262 50.000 20.59 0.00 0.00 2.18
489 708 0.901827 TGAGTGGCCGCAATCTAAGA 59.098 50.000 20.59 0.00 0.00 2.10
490 709 1.291132 GAGTGGCCGCAATCTAAGAC 58.709 55.000 20.59 0.00 0.00 3.01
491 710 0.905357 AGTGGCCGCAATCTAAGACT 59.095 50.000 20.59 0.00 0.00 3.24
492 711 1.279271 AGTGGCCGCAATCTAAGACTT 59.721 47.619 20.59 0.00 0.00 3.01
493 712 1.398390 GTGGCCGCAATCTAAGACTTG 59.602 52.381 12.58 0.00 0.00 3.16
494 713 1.277842 TGGCCGCAATCTAAGACTTGA 59.722 47.619 0.00 0.00 0.00 3.02
495 714 2.092968 TGGCCGCAATCTAAGACTTGAT 60.093 45.455 0.00 0.00 0.00 2.57
496 715 2.945668 GGCCGCAATCTAAGACTTGATT 59.054 45.455 0.00 2.94 33.69 2.57
497 716 3.378427 GGCCGCAATCTAAGACTTGATTT 59.622 43.478 0.00 0.00 31.35 2.17
498 717 4.142381 GGCCGCAATCTAAGACTTGATTTT 60.142 41.667 0.00 0.00 31.35 1.82
499 718 5.065988 GGCCGCAATCTAAGACTTGATTTTA 59.934 40.000 0.00 0.00 31.35 1.52
500 719 6.195165 GCCGCAATCTAAGACTTGATTTTAG 58.805 40.000 0.00 0.70 31.35 1.85
501 720 6.183360 GCCGCAATCTAAGACTTGATTTTAGT 60.183 38.462 0.00 0.00 31.35 2.24
515 734 6.515272 TGATTTTAGTCCATTGCTTCTTCC 57.485 37.500 0.00 0.00 0.00 3.46
527 746 5.367945 TTGCTTCTTCCCCGATTAGTTAT 57.632 39.130 0.00 0.00 0.00 1.89
586 805 4.846940 AGAATCTAAAGTTGGGACTCCTGT 59.153 41.667 0.00 0.00 34.21 4.00
653 872 7.652909 TGTGGATCTGTTTGATAAAAGCAAAAG 59.347 33.333 0.00 0.00 37.03 2.27
667 886 6.648879 AAAGCAAAAGCAGATACAACCTTA 57.351 33.333 0.00 0.00 0.00 2.69
680 899 3.311091 ACAACCTTACCTATATCCGCCA 58.689 45.455 0.00 0.00 0.00 5.69
685 904 5.313712 ACCTTACCTATATCCGCCAAAATG 58.686 41.667 0.00 0.00 0.00 2.32
693 912 7.039993 ACCTATATCCGCCAAAATGGTTTTATC 60.040 37.037 0.00 0.00 40.46 1.75
722 941 8.166061 AGCACATGGTTAATATTGGAGTATCAT 58.834 33.333 0.00 0.00 36.25 2.45
750 969 6.508777 TCTTTTGTGTGGCCTTAATGTAAAC 58.491 36.000 3.32 0.00 0.00 2.01
881 1100 6.681368 GCCCATTAGTGATTTTGACATCTTCC 60.681 42.308 0.00 0.00 0.00 3.46
1071 1290 0.947244 CGGCAGTTGTGAGAAGCTTT 59.053 50.000 0.00 0.00 0.00 3.51
1108 1327 1.144936 CCTCTGAACCGCCTGATCC 59.855 63.158 0.00 0.00 0.00 3.36
1341 1560 1.377725 CCCCAGTGGCATGTCAGTC 60.378 63.158 4.20 0.00 0.00 3.51
1347 1566 2.225019 CAGTGGCATGTCAGTCAACTTC 59.775 50.000 4.20 0.00 0.00 3.01
1520 1739 2.158682 ACTTGGATGTGTACTTGGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
1546 1765 1.764134 ACCTTGGTAACCGTGAGTTGA 59.236 47.619 0.00 0.00 39.67 3.18
1652 1871 5.991328 ACATATTCTGCATTAACAGTCCG 57.009 39.130 0.00 0.00 38.84 4.79
1951 2170 5.799213 CTGTCCATGGTAATAATCTCCTCC 58.201 45.833 12.58 0.00 0.00 4.30
1973 2192 7.995488 CCTCCATCATACCTTATCTTTTGAAGT 59.005 37.037 0.00 0.00 0.00 3.01
2049 2269 9.396022 ACTCCACGATAATCAAAGAAACAATAT 57.604 29.630 0.00 0.00 0.00 1.28
2129 2349 5.715434 ATATAAGGCTTCTTCGGTCTCTC 57.285 43.478 1.30 0.00 32.23 3.20
2131 2351 1.181786 AGGCTTCTTCGGTCTCTCTG 58.818 55.000 0.00 0.00 0.00 3.35
2133 2353 2.093106 GGCTTCTTCGGTCTCTCTGTA 58.907 52.381 0.00 0.00 0.00 2.74
2134 2354 2.691011 GGCTTCTTCGGTCTCTCTGTAT 59.309 50.000 0.00 0.00 0.00 2.29
2135 2355 3.490078 GGCTTCTTCGGTCTCTCTGTATG 60.490 52.174 0.00 0.00 0.00 2.39
2293 2515 7.972832 ATTGGTGAAATAACTCGTCTTAACA 57.027 32.000 0.00 0.00 0.00 2.41
2407 2630 5.270853 AGTCATGTACACGTTTTGCTTTTC 58.729 37.500 0.00 0.00 0.00 2.29
2456 2679 2.699846 TCTCTACTACTCCCTCCGTCTC 59.300 54.545 0.00 0.00 0.00 3.36
2507 2730 7.864307 ATACGGATGTATCTAACGCTAAAAC 57.136 36.000 0.00 0.00 36.56 2.43
2533 2756 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
2608 2831 4.855715 TGAATTCGGACTAGCTATCCAG 57.144 45.455 17.20 11.93 35.83 3.86
2731 2954 4.203226 TGGATTTGCTCTGTACAAACACA 58.797 39.130 0.00 0.00 39.65 3.72
2905 3139 2.609459 AGCAAACAACGACTCACTGAAG 59.391 45.455 0.00 0.00 0.00 3.02
3217 3614 4.998671 ACATGACCAATTGACAAACACA 57.001 36.364 7.12 0.00 0.00 3.72
3332 3729 8.916062 TGGCAATCATAAGATCAACAAATATGT 58.084 29.630 0.00 0.00 35.64 2.29
3333 3730 9.188588 GGCAATCATAAGATCAACAAATATGTG 57.811 33.333 0.00 0.00 34.76 3.21
3857 4259 7.987750 TTGAGTTAATGTACAAGCACCATTA 57.012 32.000 0.00 0.00 31.63 1.90
3965 4367 3.546271 CAGCATTTTCATCTGATTGCGTG 59.454 43.478 5.81 2.60 33.12 5.34
3986 4388 7.753132 TGCGTGTTGGTGATTTTTAATCTTATC 59.247 33.333 0.00 0.00 0.00 1.75
4016 4418 9.097946 ACAACTACAAGTATAAACTACTCCCTT 57.902 33.333 0.00 0.00 33.75 3.95
4104 4506 9.170734 TGAATCTACACTGTAAACTACGTCTAT 57.829 33.333 0.00 0.00 0.00 1.98
4141 4543 9.739276 ATGTAGTCCACATTGAAATCTCTAAAA 57.261 29.630 0.00 0.00 46.01 1.52
4169 4571 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
4479 4882 5.312079 ACTTTTAAGCTCAACTGCTCAGAT 58.688 37.500 3.60 0.00 43.24 2.90
4571 4974 5.136105 GCTCCTGGGAATCAAATATGAGTT 58.864 41.667 0.00 0.00 39.39 3.01
4918 5321 8.489489 ACAAATGTTATGTATCTCCTGACAGAT 58.511 33.333 3.32 0.00 36.97 2.90
5114 5517 6.127338 CCCATCTCTACTGTATGTTCTGTTCA 60.127 42.308 0.00 0.00 0.00 3.18
5141 5544 6.212791 CCCCTCAAAAGATACTCGGGATATAA 59.787 42.308 0.00 0.00 31.85 0.98
5187 5591 6.053005 CGTTATGTAGGTATTGTGATTGGGT 58.947 40.000 0.00 0.00 0.00 4.51
5353 5757 1.337728 TGAAAATGCGAGCGAGAGGAA 60.338 47.619 0.00 0.00 0.00 3.36
5357 5761 2.029838 ATGCGAGCGAGAGGAAAAAT 57.970 45.000 0.00 0.00 0.00 1.82
5472 5876 4.883585 GGATCTTATCAAACCAGCATGTGA 59.116 41.667 0.00 0.00 0.00 3.58
5654 6091 3.733443 AGCAACATGGTTTCTTTGACC 57.267 42.857 0.00 0.00 37.69 4.02
5995 6432 0.904865 ACAGCTGAGTCGGGAATGGA 60.905 55.000 23.35 0.00 0.00 3.41
6082 6519 3.605692 GCACAAGTTCTTGAAGAAGCGAG 60.606 47.826 17.75 1.89 34.42 5.03
6219 9072 8.783093 TGAATCGTACAAATTCATCTCAAGTTT 58.217 29.630 13.82 0.00 38.02 2.66
6288 9141 1.272872 ACCTAGCCGGGAGAACTTACA 60.273 52.381 2.18 0.00 36.97 2.41
6423 9276 5.290493 TGGTTGTTCTTTCTAAGCTGAGA 57.710 39.130 0.00 0.00 0.00 3.27
6430 9283 8.225603 TGTTCTTTCTAAGCTGAGACAAAAAT 57.774 30.769 0.00 0.00 0.00 1.82
6434 9287 9.337396 TCTTTCTAAGCTGAGACAAAAATTGTA 57.663 29.630 0.00 0.00 45.52 2.41
6447 9300 4.988708 AAAATTGTATTTTGCAGCACCG 57.011 36.364 0.00 0.00 0.00 4.94
6495 9348 4.133078 CCCTACATGCAATCCTCTTCTTC 58.867 47.826 0.00 0.00 0.00 2.87
6528 9385 8.892723 TGTATTATGCAGTACCATCTTTTTCTG 58.107 33.333 0.00 0.00 0.00 3.02
6543 9402 7.333528 TCTTTTTCTGTTTGAGCATACAGTT 57.666 32.000 16.78 0.00 40.02 3.16
6581 9440 9.294030 GATGAATGATGGATTTACTCAACAAAC 57.706 33.333 0.00 0.00 0.00 2.93
6584 9443 9.132521 GAATGATGGATTTACTCAACAAACTTG 57.867 33.333 0.00 0.00 0.00 3.16
6602 9461 7.233348 ACAAACTTGGTGTTTCATCCTTGATAT 59.767 33.333 0.00 0.00 46.11 1.63
6605 9464 9.479549 AACTTGGTGTTTCATCCTTGATATATT 57.520 29.630 0.00 0.00 34.84 1.28
6615 9474 9.881649 TTCATCCTTGATATATTGCACTCTATC 57.118 33.333 3.37 3.37 0.00 2.08
6660 9519 8.874744 AATGATATTCCCATATTGAACTGGAG 57.125 34.615 0.00 0.00 34.24 3.86
6676 9535 3.072184 ACTGGAGCCATTCCTGCTATAAG 59.928 47.826 0.00 0.00 46.03 1.73
6821 9688 5.431179 AAGGTTACATAAGGTGTAGGGTG 57.569 43.478 0.00 0.00 43.79 4.61
6840 9707 0.036577 GTCATGTCTGGCTCTGCTGT 60.037 55.000 0.00 0.00 0.00 4.40
6927 9802 1.198713 CTGAGGTGTACAGAGCCCAT 58.801 55.000 0.00 0.00 37.54 4.00
6930 9805 0.620556 AGGTGTACAGAGCCCATTGG 59.379 55.000 0.00 0.00 0.00 3.16
6997 9872 6.732896 TGGAGAAGTTCAGTCTAAAACTCT 57.267 37.500 5.50 1.75 35.45 3.24
7031 9906 6.351711 ACACATATTACTGACATGCTCACAT 58.648 36.000 0.00 0.00 36.79 3.21
7032 9907 6.825213 ACACATATTACTGACATGCTCACATT 59.175 34.615 0.00 0.00 32.87 2.71
7056 9931 4.616953 CCTTGAACTTATGGCGTTTGTTT 58.383 39.130 0.00 0.00 0.00 2.83
7074 9949 4.389374 TGTTTTCTTCCTTCGATGAAGCT 58.611 39.130 16.43 0.00 39.24 3.74
7075 9950 4.214119 TGTTTTCTTCCTTCGATGAAGCTG 59.786 41.667 16.43 0.40 39.24 4.24
7076 9951 3.685139 TTCTTCCTTCGATGAAGCTGT 57.315 42.857 16.43 0.00 39.24 4.40
7077 9952 3.238108 TCTTCCTTCGATGAAGCTGTC 57.762 47.619 16.43 0.00 39.24 3.51
7078 9953 2.562738 TCTTCCTTCGATGAAGCTGTCA 59.437 45.455 16.43 0.00 39.24 3.58
7079 9954 2.370281 TCCTTCGATGAAGCTGTCAC 57.630 50.000 0.00 0.00 39.72 3.67
7080 9955 1.618343 TCCTTCGATGAAGCTGTCACA 59.382 47.619 0.00 0.00 39.72 3.58
7081 9956 1.728971 CCTTCGATGAAGCTGTCACAC 59.271 52.381 0.00 0.00 39.72 3.82
7082 9957 1.728971 CTTCGATGAAGCTGTCACACC 59.271 52.381 0.00 0.00 39.72 4.16
7083 9958 0.388520 TCGATGAAGCTGTCACACCG 60.389 55.000 0.00 0.00 39.72 4.94
7084 9959 1.354337 CGATGAAGCTGTCACACCGG 61.354 60.000 0.00 0.00 39.72 5.28
7085 9960 1.639298 GATGAAGCTGTCACACCGGC 61.639 60.000 0.00 0.00 39.72 6.13
7086 9961 2.280797 GAAGCTGTCACACCGGCA 60.281 61.111 0.00 0.00 0.00 5.69
7087 9962 1.672356 GAAGCTGTCACACCGGCAT 60.672 57.895 0.00 0.00 0.00 4.40
7088 9963 1.639298 GAAGCTGTCACACCGGCATC 61.639 60.000 0.00 0.00 0.00 3.91
7089 9964 2.358615 GCTGTCACACCGGCATCA 60.359 61.111 0.00 0.00 0.00 3.07
7090 9965 1.746615 GCTGTCACACCGGCATCAT 60.747 57.895 0.00 0.00 0.00 2.45
7091 9966 1.709147 GCTGTCACACCGGCATCATC 61.709 60.000 0.00 0.00 0.00 2.92
7092 9967 0.391528 CTGTCACACCGGCATCATCA 60.392 55.000 0.00 0.00 0.00 3.07
7093 9968 0.391528 TGTCACACCGGCATCATCAG 60.392 55.000 0.00 0.00 0.00 2.90
7094 9969 1.091771 GTCACACCGGCATCATCAGG 61.092 60.000 0.00 0.00 0.00 3.86
7095 9970 1.221566 CACACCGGCATCATCAGGA 59.778 57.895 0.00 0.00 0.00 3.86
7096 9971 1.091771 CACACCGGCATCATCAGGAC 61.092 60.000 0.00 0.00 0.00 3.85
7097 9972 1.524621 CACCGGCATCATCAGGACC 60.525 63.158 0.00 0.00 0.00 4.46
7098 9973 1.690633 ACCGGCATCATCAGGACCT 60.691 57.895 0.00 0.00 0.00 3.85
7099 9974 1.227764 CCGGCATCATCAGGACCTG 60.228 63.158 15.99 15.99 0.00 4.00
7100 9975 1.689243 CCGGCATCATCAGGACCTGA 61.689 60.000 26.28 26.28 44.99 3.86
7107 9982 2.981302 TCAGGACCTGATGCGGTG 59.019 61.111 20.74 0.00 37.42 4.94
7108 9983 2.124983 CAGGACCTGATGCGGTGG 60.125 66.667 17.22 0.00 37.42 4.61
7109 9984 2.284625 AGGACCTGATGCGGTGGA 60.285 61.111 0.00 0.00 37.42 4.02
7110 9985 2.125106 GGACCTGATGCGGTGGAC 60.125 66.667 0.00 0.00 37.42 4.02
7112 9987 3.296709 GACCTGATGCGGTGGACGT 62.297 63.158 0.00 0.00 46.52 4.34
7113 9988 2.815211 CCTGATGCGGTGGACGTG 60.815 66.667 0.00 0.00 46.52 4.49
7114 9989 2.048222 CTGATGCGGTGGACGTGT 60.048 61.111 0.00 0.00 46.52 4.49
7115 9990 2.356913 TGATGCGGTGGACGTGTG 60.357 61.111 0.00 0.00 46.52 3.82
7116 9991 2.048597 GATGCGGTGGACGTGTGA 60.049 61.111 0.00 0.00 46.52 3.58
7117 9992 1.447838 GATGCGGTGGACGTGTGAT 60.448 57.895 0.00 0.00 46.52 3.06
7118 9993 1.003839 ATGCGGTGGACGTGTGATT 60.004 52.632 0.00 0.00 46.52 2.57
7119 9994 1.019278 ATGCGGTGGACGTGTGATTC 61.019 55.000 0.00 0.00 46.52 2.52
7120 9995 2.726691 GCGGTGGACGTGTGATTCG 61.727 63.158 0.00 0.00 46.52 3.34
7121 9996 2.092291 CGGTGGACGTGTGATTCGG 61.092 63.158 0.00 0.00 37.93 4.30
7122 9997 1.005394 GGTGGACGTGTGATTCGGT 60.005 57.895 0.00 0.00 0.00 4.69
7123 9998 1.289109 GGTGGACGTGTGATTCGGTG 61.289 60.000 0.00 0.00 0.00 4.94
7124 9999 1.005512 TGGACGTGTGATTCGGTGG 60.006 57.895 0.00 0.00 0.00 4.61
7125 10000 1.740296 GGACGTGTGATTCGGTGGG 60.740 63.158 0.00 0.00 0.00 4.61
7126 10001 2.358247 ACGTGTGATTCGGTGGGC 60.358 61.111 0.00 0.00 0.00 5.36
7127 10002 3.124921 CGTGTGATTCGGTGGGCC 61.125 66.667 0.00 0.00 0.00 5.80
7128 10003 2.750237 GTGTGATTCGGTGGGCCC 60.750 66.667 17.59 17.59 0.00 5.80
7129 10004 4.041762 TGTGATTCGGTGGGCCCC 62.042 66.667 22.27 10.91 0.00 5.80
7151 10026 3.000819 CCTACTGGCACGGACCCA 61.001 66.667 0.00 0.00 38.67 4.51
7152 10027 2.264794 CTACTGGCACGGACCCAC 59.735 66.667 0.00 0.00 38.67 4.61
7153 10028 3.310860 CTACTGGCACGGACCCACC 62.311 68.421 0.00 0.00 38.67 4.61
7154 10029 3.839046 TACTGGCACGGACCCACCT 62.839 63.158 0.00 0.00 38.67 4.00
7155 10030 4.704833 CTGGCACGGACCCACCTG 62.705 72.222 0.00 0.00 36.31 4.00
7157 10032 3.315949 GGCACGGACCCACCTGTA 61.316 66.667 0.00 0.00 36.31 2.74
7158 10033 2.745037 GCACGGACCCACCTGTAA 59.255 61.111 0.00 0.00 36.31 2.41
7159 10034 1.375523 GCACGGACCCACCTGTAAG 60.376 63.158 0.00 0.00 36.31 2.34
7177 10052 4.614673 GCGAGTTGCCAAGTGTTG 57.385 55.556 0.00 0.00 37.76 3.33
7178 10053 1.658409 GCGAGTTGCCAAGTGTTGC 60.658 57.895 0.00 0.00 37.76 4.17
7179 10054 1.008538 CGAGTTGCCAAGTGTTGCC 60.009 57.895 0.00 0.00 0.00 4.52
7180 10055 1.447317 CGAGTTGCCAAGTGTTGCCT 61.447 55.000 0.00 0.00 0.00 4.75
7181 10056 0.031178 GAGTTGCCAAGTGTTGCCTG 59.969 55.000 0.00 0.00 0.00 4.85
7182 10057 1.067916 GTTGCCAAGTGTTGCCTGG 59.932 57.895 0.00 0.00 0.00 4.45
7183 10058 2.795110 TTGCCAAGTGTTGCCTGGC 61.795 57.895 12.87 12.87 45.19 4.85
7184 10059 2.914097 GCCAAGTGTTGCCTGGCT 60.914 61.111 21.03 0.00 41.99 4.75
7185 10060 1.603455 GCCAAGTGTTGCCTGGCTA 60.603 57.895 21.03 9.91 41.99 3.93
7186 10061 0.967380 GCCAAGTGTTGCCTGGCTAT 60.967 55.000 21.03 0.00 41.99 2.97
7187 10062 1.681780 GCCAAGTGTTGCCTGGCTATA 60.682 52.381 21.03 7.97 41.99 1.31
7188 10063 2.936202 CCAAGTGTTGCCTGGCTATAT 58.064 47.619 21.03 0.00 0.00 0.86
7189 10064 3.747388 GCCAAGTGTTGCCTGGCTATATA 60.747 47.826 21.03 0.00 41.99 0.86
7190 10065 4.067896 CCAAGTGTTGCCTGGCTATATAG 58.932 47.826 21.03 5.30 0.00 1.31
7201 10076 2.307934 GCTATATAGCCAGCTGGAGC 57.692 55.000 37.21 28.57 43.39 4.70
7202 10077 1.470632 GCTATATAGCCAGCTGGAGCG 60.471 57.143 37.21 16.14 43.94 5.03
7203 10078 3.783710 GCTATATAGCCAGCTGGAGCGA 61.784 54.545 37.21 18.17 43.94 4.93
7204 10079 5.582225 GCTATATAGCCAGCTGGAGCGAG 62.582 56.522 37.21 22.78 43.94 5.03
7211 10086 3.289525 GCTGGAGCGAGTAGGTGT 58.710 61.111 0.00 0.00 0.00 4.16
7212 10087 1.153745 GCTGGAGCGAGTAGGTGTG 60.154 63.158 0.00 0.00 0.00 3.82
7213 10088 1.153745 CTGGAGCGAGTAGGTGTGC 60.154 63.158 0.00 0.00 0.00 4.57
7214 10089 2.202623 GGAGCGAGTAGGTGTGCG 60.203 66.667 0.00 0.00 0.00 5.34
7215 10090 2.567049 GAGCGAGTAGGTGTGCGT 59.433 61.111 0.00 0.00 0.00 5.24
7216 10091 1.801913 GAGCGAGTAGGTGTGCGTG 60.802 63.158 0.00 0.00 0.00 5.34
7217 10092 2.049433 GCGAGTAGGTGTGCGTGT 60.049 61.111 0.00 0.00 0.00 4.49
7218 10093 2.372690 GCGAGTAGGTGTGCGTGTG 61.373 63.158 0.00 0.00 0.00 3.82
7219 10094 1.007734 CGAGTAGGTGTGCGTGTGT 60.008 57.895 0.00 0.00 0.00 3.72
7220 10095 0.239082 CGAGTAGGTGTGCGTGTGTA 59.761 55.000 0.00 0.00 0.00 2.90
7221 10096 1.728179 CGAGTAGGTGTGCGTGTGTAG 60.728 57.143 0.00 0.00 0.00 2.74
7222 10097 1.538512 GAGTAGGTGTGCGTGTGTAGA 59.461 52.381 0.00 0.00 0.00 2.59
7223 10098 1.958579 AGTAGGTGTGCGTGTGTAGAA 59.041 47.619 0.00 0.00 0.00 2.10
7224 10099 2.363038 AGTAGGTGTGCGTGTGTAGAAA 59.637 45.455 0.00 0.00 0.00 2.52
7225 10100 2.543777 AGGTGTGCGTGTGTAGAAAT 57.456 45.000 0.00 0.00 0.00 2.17
7226 10101 2.846193 AGGTGTGCGTGTGTAGAAATT 58.154 42.857 0.00 0.00 0.00 1.82
7227 10102 3.997762 AGGTGTGCGTGTGTAGAAATTA 58.002 40.909 0.00 0.00 0.00 1.40
7228 10103 4.575885 AGGTGTGCGTGTGTAGAAATTAT 58.424 39.130 0.00 0.00 0.00 1.28
7229 10104 4.391830 AGGTGTGCGTGTGTAGAAATTATG 59.608 41.667 0.00 0.00 0.00 1.90
7230 10105 4.153475 GGTGTGCGTGTGTAGAAATTATGT 59.847 41.667 0.00 0.00 0.00 2.29
7231 10106 5.313623 GTGTGCGTGTGTAGAAATTATGTC 58.686 41.667 0.00 0.00 0.00 3.06
7232 10107 4.991687 TGTGCGTGTGTAGAAATTATGTCA 59.008 37.500 0.00 0.00 0.00 3.58
7233 10108 5.467063 TGTGCGTGTGTAGAAATTATGTCAA 59.533 36.000 0.00 0.00 0.00 3.18
7234 10109 6.015504 GTGCGTGTGTAGAAATTATGTCAAG 58.984 40.000 0.00 0.00 0.00 3.02
7235 10110 5.699001 TGCGTGTGTAGAAATTATGTCAAGT 59.301 36.000 0.00 0.00 0.00 3.16
7236 10111 6.128661 TGCGTGTGTAGAAATTATGTCAAGTC 60.129 38.462 0.00 0.00 0.00 3.01
7237 10112 6.090898 GCGTGTGTAGAAATTATGTCAAGTCT 59.909 38.462 0.00 0.00 0.00 3.24
7238 10113 7.667283 CGTGTGTAGAAATTATGTCAAGTCTC 58.333 38.462 0.00 0.00 0.00 3.36
7239 10114 7.542477 CGTGTGTAGAAATTATGTCAAGTCTCT 59.458 37.037 0.00 0.00 0.00 3.10
7240 10115 8.651588 GTGTGTAGAAATTATGTCAAGTCTCTG 58.348 37.037 0.00 0.00 0.00 3.35
7241 10116 8.585018 TGTGTAGAAATTATGTCAAGTCTCTGA 58.415 33.333 0.00 0.00 0.00 3.27
7242 10117 9.424319 GTGTAGAAATTATGTCAAGTCTCTGAA 57.576 33.333 0.00 0.00 0.00 3.02
7243 10118 9.424319 TGTAGAAATTATGTCAAGTCTCTGAAC 57.576 33.333 0.00 0.00 0.00 3.18
7244 10119 7.913674 AGAAATTATGTCAAGTCTCTGAACC 57.086 36.000 0.00 0.00 0.00 3.62
7245 10120 7.684529 AGAAATTATGTCAAGTCTCTGAACCT 58.315 34.615 0.00 0.00 0.00 3.50
7246 10121 7.821846 AGAAATTATGTCAAGTCTCTGAACCTC 59.178 37.037 0.00 0.00 0.00 3.85
7247 10122 6.865834 ATTATGTCAAGTCTCTGAACCTCT 57.134 37.500 0.00 0.00 0.00 3.69
7248 10123 4.799564 ATGTCAAGTCTCTGAACCTCTC 57.200 45.455 0.00 0.00 0.00 3.20
7249 10124 3.566351 TGTCAAGTCTCTGAACCTCTCA 58.434 45.455 0.00 0.00 0.00 3.27
7250 10125 3.319405 TGTCAAGTCTCTGAACCTCTCAC 59.681 47.826 0.00 0.00 0.00 3.51
7251 10126 2.894126 TCAAGTCTCTGAACCTCTCACC 59.106 50.000 0.00 0.00 0.00 4.02
7252 10127 2.896685 CAAGTCTCTGAACCTCTCACCT 59.103 50.000 0.00 0.00 0.00 4.00
7253 10128 4.082845 CAAGTCTCTGAACCTCTCACCTA 58.917 47.826 0.00 0.00 0.00 3.08
7254 10129 4.390129 AGTCTCTGAACCTCTCACCTAA 57.610 45.455 0.00 0.00 0.00 2.69
7255 10130 4.941713 AGTCTCTGAACCTCTCACCTAAT 58.058 43.478 0.00 0.00 0.00 1.73
7256 10131 4.953579 AGTCTCTGAACCTCTCACCTAATC 59.046 45.833 0.00 0.00 0.00 1.75
7257 10132 4.953579 GTCTCTGAACCTCTCACCTAATCT 59.046 45.833 0.00 0.00 0.00 2.40
7258 10133 4.952957 TCTCTGAACCTCTCACCTAATCTG 59.047 45.833 0.00 0.00 0.00 2.90
7259 10134 4.678256 TCTGAACCTCTCACCTAATCTGT 58.322 43.478 0.00 0.00 0.00 3.41
7260 10135 5.827756 TCTGAACCTCTCACCTAATCTGTA 58.172 41.667 0.00 0.00 0.00 2.74
7261 10136 5.652891 TCTGAACCTCTCACCTAATCTGTAC 59.347 44.000 0.00 0.00 0.00 2.90
7262 10137 4.710375 TGAACCTCTCACCTAATCTGTACC 59.290 45.833 0.00 0.00 0.00 3.34
7263 10138 4.611564 ACCTCTCACCTAATCTGTACCT 57.388 45.455 0.00 0.00 0.00 3.08
7264 10139 4.538738 ACCTCTCACCTAATCTGTACCTC 58.461 47.826 0.00 0.00 0.00 3.85
7265 10140 3.892588 CCTCTCACCTAATCTGTACCTCC 59.107 52.174 0.00 0.00 0.00 4.30
7266 10141 4.386986 CCTCTCACCTAATCTGTACCTCCT 60.387 50.000 0.00 0.00 0.00 3.69
7267 10142 4.794334 TCTCACCTAATCTGTACCTCCTC 58.206 47.826 0.00 0.00 0.00 3.71
7268 10143 3.892588 CTCACCTAATCTGTACCTCCTCC 59.107 52.174 0.00 0.00 0.00 4.30
7269 10144 2.966516 CACCTAATCTGTACCTCCTCCC 59.033 54.545 0.00 0.00 0.00 4.30
7270 10145 2.866454 ACCTAATCTGTACCTCCTCCCT 59.134 50.000 0.00 0.00 0.00 4.20
7271 10146 3.275228 ACCTAATCTGTACCTCCTCCCTT 59.725 47.826 0.00 0.00 0.00 3.95
7272 10147 3.643792 CCTAATCTGTACCTCCTCCCTTG 59.356 52.174 0.00 0.00 0.00 3.61
7273 10148 2.182516 ATCTGTACCTCCTCCCTTGG 57.817 55.000 0.00 0.00 0.00 3.61
7274 10149 1.089978 TCTGTACCTCCTCCCTTGGA 58.910 55.000 0.00 0.00 34.52 3.53
7275 10150 1.435563 TCTGTACCTCCTCCCTTGGAA 59.564 52.381 0.00 0.00 35.43 3.53
7276 10151 2.158066 TCTGTACCTCCTCCCTTGGAAA 60.158 50.000 0.00 0.00 35.43 3.13
7277 10152 2.237392 CTGTACCTCCTCCCTTGGAAAG 59.763 54.545 0.00 0.00 45.69 2.62
7291 10166 3.739401 TGGAAAGAAATCCCCCTTCTC 57.261 47.619 0.00 0.00 38.82 2.87
7292 10167 2.311841 TGGAAAGAAATCCCCCTTCTCC 59.688 50.000 0.00 0.00 38.82 3.71
7293 10168 2.311841 GGAAAGAAATCCCCCTTCTCCA 59.688 50.000 0.00 0.00 31.85 3.86
7294 10169 3.245622 GGAAAGAAATCCCCCTTCTCCAA 60.246 47.826 0.00 0.00 31.85 3.53
7295 10170 3.746792 AAGAAATCCCCCTTCTCCAAG 57.253 47.619 0.00 0.00 31.85 3.61
7296 10171 2.648838 AGAAATCCCCCTTCTCCAAGT 58.351 47.619 0.00 0.00 0.00 3.16
7297 10172 2.578480 AGAAATCCCCCTTCTCCAAGTC 59.422 50.000 0.00 0.00 0.00 3.01
7298 10173 2.367947 AATCCCCCTTCTCCAAGTCT 57.632 50.000 0.00 0.00 0.00 3.24
7299 10174 1.886422 ATCCCCCTTCTCCAAGTCTC 58.114 55.000 0.00 0.00 0.00 3.36
7300 10175 0.614979 TCCCCCTTCTCCAAGTCTCG 60.615 60.000 0.00 0.00 0.00 4.04
7301 10176 0.614979 CCCCCTTCTCCAAGTCTCGA 60.615 60.000 0.00 0.00 0.00 4.04
7302 10177 1.490574 CCCCTTCTCCAAGTCTCGAT 58.509 55.000 0.00 0.00 0.00 3.59
7303 10178 1.410882 CCCCTTCTCCAAGTCTCGATC 59.589 57.143 0.00 0.00 0.00 3.69
7304 10179 2.383855 CCCTTCTCCAAGTCTCGATCT 58.616 52.381 0.00 0.00 0.00 2.75
7305 10180 2.360801 CCCTTCTCCAAGTCTCGATCTC 59.639 54.545 0.00 0.00 0.00 2.75
7306 10181 3.020274 CCTTCTCCAAGTCTCGATCTCA 58.980 50.000 0.00 0.00 0.00 3.27
7307 10182 3.181491 CCTTCTCCAAGTCTCGATCTCAC 60.181 52.174 0.00 0.00 0.00 3.51
7308 10183 2.370349 TCTCCAAGTCTCGATCTCACC 58.630 52.381 0.00 0.00 0.00 4.02
7309 10184 1.407258 CTCCAAGTCTCGATCTCACCC 59.593 57.143 0.00 0.00 0.00 4.61
7310 10185 0.461961 CCAAGTCTCGATCTCACCCC 59.538 60.000 0.00 0.00 0.00 4.95
7311 10186 0.461961 CAAGTCTCGATCTCACCCCC 59.538 60.000 0.00 0.00 0.00 5.40
7326 10201 2.770048 CCCCTTGCCCTCTCCGAT 60.770 66.667 0.00 0.00 0.00 4.18
7327 10202 2.812619 CCCCTTGCCCTCTCCGATC 61.813 68.421 0.00 0.00 0.00 3.69
7328 10203 2.812619 CCCTTGCCCTCTCCGATCC 61.813 68.421 0.00 0.00 0.00 3.36
7329 10204 2.812619 CCTTGCCCTCTCCGATCCC 61.813 68.421 0.00 0.00 0.00 3.85
7330 10205 1.764054 CTTGCCCTCTCCGATCCCT 60.764 63.158 0.00 0.00 0.00 4.20
7331 10206 1.306997 TTGCCCTCTCCGATCCCTT 60.307 57.895 0.00 0.00 0.00 3.95
7332 10207 1.626356 TTGCCCTCTCCGATCCCTTG 61.626 60.000 0.00 0.00 0.00 3.61
7333 10208 2.825264 CCCTCTCCGATCCCTTGC 59.175 66.667 0.00 0.00 0.00 4.01
7334 10209 2.066393 CCCTCTCCGATCCCTTGCA 61.066 63.158 0.00 0.00 0.00 4.08
7335 10210 1.626356 CCCTCTCCGATCCCTTGCAA 61.626 60.000 0.00 0.00 0.00 4.08
7336 10211 0.179062 CCTCTCCGATCCCTTGCAAG 60.179 60.000 19.93 19.93 0.00 4.01
7337 10212 0.179062 CTCTCCGATCCCTTGCAAGG 60.179 60.000 34.60 34.60 46.06 3.61
7347 10222 3.149899 CTTGCAAGGATGAGCTCGT 57.850 52.632 19.14 8.55 0.00 4.18
7348 10223 0.725686 CTTGCAAGGATGAGCTCGTG 59.274 55.000 19.14 5.04 0.00 4.35
7349 10224 0.321346 TTGCAAGGATGAGCTCGTGA 59.679 50.000 14.59 0.00 0.00 4.35
7350 10225 0.390340 TGCAAGGATGAGCTCGTGAC 60.390 55.000 14.59 6.13 0.00 3.67
7351 10226 0.390340 GCAAGGATGAGCTCGTGACA 60.390 55.000 14.59 0.00 0.00 3.58
7352 10227 1.741732 GCAAGGATGAGCTCGTGACAT 60.742 52.381 14.59 0.00 0.00 3.06
7353 10228 2.625737 CAAGGATGAGCTCGTGACATT 58.374 47.619 14.59 0.53 0.00 2.71
7354 10229 3.005554 CAAGGATGAGCTCGTGACATTT 58.994 45.455 14.59 0.00 0.00 2.32
7355 10230 2.625737 AGGATGAGCTCGTGACATTTG 58.374 47.619 14.59 0.00 0.00 2.32
7356 10231 1.667724 GGATGAGCTCGTGACATTTGG 59.332 52.381 14.59 0.00 0.00 3.28
7357 10232 2.350522 GATGAGCTCGTGACATTTGGT 58.649 47.619 14.59 0.00 0.00 3.67
7358 10233 3.521560 GATGAGCTCGTGACATTTGGTA 58.478 45.455 14.59 0.00 0.00 3.25
7359 10234 3.394674 TGAGCTCGTGACATTTGGTAA 57.605 42.857 9.64 0.00 0.00 2.85
7360 10235 3.937814 TGAGCTCGTGACATTTGGTAAT 58.062 40.909 9.64 0.00 0.00 1.89
7361 10236 3.932710 TGAGCTCGTGACATTTGGTAATC 59.067 43.478 9.64 0.00 0.00 1.75
7362 10237 3.932710 GAGCTCGTGACATTTGGTAATCA 59.067 43.478 0.00 0.00 0.00 2.57
7363 10238 3.935203 AGCTCGTGACATTTGGTAATCAG 59.065 43.478 0.00 0.00 0.00 2.90
7364 10239 3.932710 GCTCGTGACATTTGGTAATCAGA 59.067 43.478 0.00 0.00 0.00 3.27
7365 10240 4.033358 GCTCGTGACATTTGGTAATCAGAG 59.967 45.833 0.00 0.00 0.00 3.35
7366 10241 3.932710 TCGTGACATTTGGTAATCAGAGC 59.067 43.478 0.00 0.00 0.00 4.09
7367 10242 3.935203 CGTGACATTTGGTAATCAGAGCT 59.065 43.478 0.00 0.00 0.00 4.09
7368 10243 5.105513 TCGTGACATTTGGTAATCAGAGCTA 60.106 40.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.986659 AGAAAATGCTTCATTGTTCACAGC 59.013 37.500 12.38 0.00 34.04 4.40
44 45 6.211515 AGACAGAAAATGCTTCATTGTTCAC 58.788 36.000 12.38 0.00 34.04 3.18
142 325 4.722700 GGTGTGGGCATGCGGAGT 62.723 66.667 12.44 0.00 0.00 3.85
143 326 4.720902 TGGTGTGGGCATGCGGAG 62.721 66.667 12.44 0.00 0.00 4.63
145 333 2.374830 TTTTTGGTGTGGGCATGCGG 62.375 55.000 12.44 0.00 0.00 5.69
163 351 7.132128 TGATTTATTTAGGGGAGGAGCAATTT 58.868 34.615 0.00 0.00 0.00 1.82
198 386 7.860613 TCTGAATAATACTGTGTTGTTGTGTG 58.139 34.615 4.16 0.00 0.00 3.82
251 469 2.538449 GCGGTGGACAACGATAATACTG 59.462 50.000 14.66 0.00 45.97 2.74
285 504 0.681887 TCAATCCAGGCAGGCACATG 60.682 55.000 0.00 0.00 37.29 3.21
296 515 5.977635 TGGAACTGTATACACTCAATCCAG 58.022 41.667 0.08 0.00 31.04 3.86
310 529 5.745312 AGTCAGTCATTGATGGAACTGTA 57.255 39.130 10.69 0.13 38.29 2.74
469 688 1.277842 TCTTAGATTGCGGCCACTCAA 59.722 47.619 2.24 3.82 0.00 3.02
473 692 1.398390 CAAGTCTTAGATTGCGGCCAC 59.602 52.381 2.24 0.00 0.00 5.01
476 695 4.622701 AAATCAAGTCTTAGATTGCGGC 57.377 40.909 9.57 0.00 34.86 6.53
477 696 7.308782 ACTAAAATCAAGTCTTAGATTGCGG 57.691 36.000 9.57 6.71 34.86 5.69
478 697 7.064609 TGGACTAAAATCAAGTCTTAGATTGCG 59.935 37.037 9.57 0.00 42.48 4.85
479 698 8.268850 TGGACTAAAATCAAGTCTTAGATTGC 57.731 34.615 9.57 0.00 42.48 3.56
482 701 8.897752 GCAATGGACTAAAATCAAGTCTTAGAT 58.102 33.333 3.50 0.00 42.48 1.98
483 702 8.103305 AGCAATGGACTAAAATCAAGTCTTAGA 58.897 33.333 3.50 0.00 42.48 2.10
484 703 8.273780 AGCAATGGACTAAAATCAAGTCTTAG 57.726 34.615 3.50 0.00 42.48 2.18
485 704 8.635765 AAGCAATGGACTAAAATCAAGTCTTA 57.364 30.769 3.50 0.00 42.48 2.10
486 705 7.449704 AGAAGCAATGGACTAAAATCAAGTCTT 59.550 33.333 3.50 0.00 42.48 3.01
487 706 6.944862 AGAAGCAATGGACTAAAATCAAGTCT 59.055 34.615 3.50 0.00 42.48 3.24
488 707 7.150783 AGAAGCAATGGACTAAAATCAAGTC 57.849 36.000 0.00 0.00 42.19 3.01
489 708 7.309438 GGAAGAAGCAATGGACTAAAATCAAGT 60.309 37.037 0.00 0.00 0.00 3.16
490 709 7.031975 GGAAGAAGCAATGGACTAAAATCAAG 58.968 38.462 0.00 0.00 0.00 3.02
491 710 6.071391 GGGAAGAAGCAATGGACTAAAATCAA 60.071 38.462 0.00 0.00 0.00 2.57
492 711 5.418840 GGGAAGAAGCAATGGACTAAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
493 712 5.163509 GGGGAAGAAGCAATGGACTAAAATC 60.164 44.000 0.00 0.00 0.00 2.17
494 713 4.711846 GGGGAAGAAGCAATGGACTAAAAT 59.288 41.667 0.00 0.00 0.00 1.82
495 714 4.086457 GGGGAAGAAGCAATGGACTAAAA 58.914 43.478 0.00 0.00 0.00 1.52
496 715 3.697166 GGGGAAGAAGCAATGGACTAAA 58.303 45.455 0.00 0.00 0.00 1.85
497 716 2.355716 CGGGGAAGAAGCAATGGACTAA 60.356 50.000 0.00 0.00 0.00 2.24
498 717 1.209504 CGGGGAAGAAGCAATGGACTA 59.790 52.381 0.00 0.00 0.00 2.59
499 718 0.035056 CGGGGAAGAAGCAATGGACT 60.035 55.000 0.00 0.00 0.00 3.85
500 719 0.035439 TCGGGGAAGAAGCAATGGAC 60.035 55.000 0.00 0.00 0.00 4.02
501 720 0.918983 ATCGGGGAAGAAGCAATGGA 59.081 50.000 0.00 0.00 0.00 3.41
515 734 3.057734 GGAACGAGCATAACTAATCGGG 58.942 50.000 0.00 0.00 39.42 5.14
527 746 1.221466 CTTGTGCGAAGGAACGAGCA 61.221 55.000 0.00 0.00 37.26 4.26
630 849 7.053710 GCTTTTGCTTTTATCAAACAGATCC 57.946 36.000 0.00 0.00 43.35 3.36
653 872 6.331061 CGGATATAGGTAAGGTTGTATCTGC 58.669 44.000 0.00 0.00 0.00 4.26
667 886 3.876309 ACCATTTTGGCGGATATAGGT 57.124 42.857 0.00 0.00 42.67 3.08
680 899 7.906327 ACCATGTGCTTAGATAAAACCATTTT 58.094 30.769 0.00 0.00 36.67 1.82
693 912 7.807977 ACTCCAATATTAACCATGTGCTTAG 57.192 36.000 0.00 0.00 0.00 2.18
722 941 1.484038 AAGGCCACACAAAAGAAGCA 58.516 45.000 5.01 0.00 0.00 3.91
750 969 6.966534 ATACAAAAAGGAAGCATGATAGGG 57.033 37.500 0.00 0.00 0.00 3.53
794 1013 9.449719 GTTTCTCCATTTCTCTTATTAGGACAA 57.550 33.333 0.00 0.00 0.00 3.18
881 1100 5.026121 TGGGCTCTATTATAGGAGGACATG 58.974 45.833 0.00 0.00 0.00 3.21
1053 1272 1.949525 TCAAAGCTTCTCACAACTGCC 59.050 47.619 0.00 0.00 0.00 4.85
1341 1560 0.825010 AGTGCTTGCCCCAGAAGTTG 60.825 55.000 0.00 0.00 0.00 3.16
1520 1739 4.285260 ACTCACGGTTACCAAGGTCTTTAT 59.715 41.667 1.13 0.00 0.00 1.40
1546 1765 1.689258 GGGGCAGGATACCTTGCAAAT 60.689 52.381 0.00 0.00 32.24 2.32
1650 1869 0.673644 ATTGAAACTCGAGGGTGCGG 60.674 55.000 18.41 0.00 0.00 5.69
1652 1871 2.293399 ACAAATTGAAACTCGAGGGTGC 59.707 45.455 18.41 3.21 0.00 5.01
1951 2170 9.401058 AGGAACTTCAAAAGATAAGGTATGATG 57.599 33.333 0.00 0.00 27.25 3.07
2129 2349 2.290260 TGGTCAAGGCCTTGTCATACAG 60.290 50.000 37.97 16.09 41.16 2.74
2131 2351 2.488153 GTTGGTCAAGGCCTTGTCATAC 59.512 50.000 37.97 29.24 41.16 2.39
2133 2353 1.133513 TGTTGGTCAAGGCCTTGTCAT 60.134 47.619 37.97 6.74 41.16 3.06
2134 2354 0.257328 TGTTGGTCAAGGCCTTGTCA 59.743 50.000 37.97 32.22 41.16 3.58
2135 2355 1.398692 TTGTTGGTCAAGGCCTTGTC 58.601 50.000 37.97 33.04 41.16 3.18
2315 2538 9.927081 ATTACTCAGTAATTCCTCCATTTCAAT 57.073 29.630 4.03 0.00 35.50 2.57
2407 2630 1.000955 GTCCCAGTAGTGTCACAGGTG 59.999 57.143 5.62 0.00 0.00 4.00
2487 2710 7.433425 AGTTACGTTTTAGCGTTAGATACATCC 59.567 37.037 0.00 0.00 43.04 3.51
2499 2722 6.085979 CGGATGTATCTAGTTACGTTTTAGCG 59.914 42.308 0.00 0.00 37.94 4.26
2500 2723 6.914757 ACGGATGTATCTAGTTACGTTTTAGC 59.085 38.462 0.00 0.00 0.00 3.09
2507 2730 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
2554 2777 7.892241 TGTGTAGTATAGTACTCCCTCTGTTTT 59.108 37.037 16.79 0.00 40.14 2.43
2555 2778 7.408543 TGTGTAGTATAGTACTCCCTCTGTTT 58.591 38.462 16.79 0.00 40.14 2.83
2556 2779 6.966751 TGTGTAGTATAGTACTCCCTCTGTT 58.033 40.000 16.79 0.00 40.14 3.16
2559 2782 9.490083 AAAATTGTGTAGTATAGTACTCCCTCT 57.510 33.333 16.79 0.00 40.14 3.69
2608 2831 3.189910 TCACAGTTGCTCATGAATCTTGC 59.810 43.478 0.00 0.00 0.00 4.01
2731 2954 0.324614 TCGTGGAGTCATGTTGGCAT 59.675 50.000 0.00 0.00 35.32 4.40
2808 3038 9.171877 AGAAGATCCAAAATAGCAGACTTTAAG 57.828 33.333 0.00 0.00 0.00 1.85
2905 3139 6.747280 CCCATCGATTTGACAAATGTTAGTTC 59.253 38.462 18.00 2.08 0.00 3.01
3095 3492 3.664025 GCTATGCACGTGTTTTTCACTTC 59.336 43.478 18.38 0.00 44.16 3.01
3217 3614 1.404717 CCAGAGAACTACATGCGCAGT 60.405 52.381 18.32 16.36 0.00 4.40
3682 4083 2.167693 TCTCGGTTCACTCACAAACACT 59.832 45.455 0.00 0.00 0.00 3.55
3857 4259 8.525290 AGGCAAGTTTAATATTTCTAGCACAT 57.475 30.769 0.00 0.00 0.00 3.21
3986 4388 9.136952 GAGTAGTTTATACTTGTAGTTGTGGTG 57.863 37.037 0.00 0.00 35.78 4.17
4064 4466 8.037758 CAGTGTAGATTCACTCATTTTACTCCT 58.962 37.037 0.00 0.00 45.37 3.69
4074 4476 7.040892 ACGTAGTTTACAGTGTAGATTCACTCA 60.041 37.037 2.68 0.00 42.26 3.41
4099 4501 8.610896 GTGGACTACATACGGATGTATATAGAC 58.389 40.741 20.64 10.95 45.42 2.59
4141 4543 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4160 4562 3.710724 AGGACTAGTTTACACTCCCTCC 58.289 50.000 0.00 0.00 34.06 4.30
4260 4662 9.618890 AAGTCATTTATCAACATAGCACTGTAT 57.381 29.630 0.00 0.00 0.00 2.29
4479 4882 0.322816 AGAGAACGGGCGGTGTAGTA 60.323 55.000 0.00 0.00 0.00 1.82
4571 4974 1.687563 TGACTCGTCTCCAACACTCA 58.312 50.000 0.00 0.00 0.00 3.41
4918 5321 9.875691 GCACTCATCAATATCTGTAACCATATA 57.124 33.333 0.00 0.00 0.00 0.86
4979 5382 4.081807 AGGTGTAGTTTCCGATAGTGTTCC 60.082 45.833 0.00 0.00 0.00 3.62
5114 5517 2.706190 CCCGAGTATCTTTTGAGGGGAT 59.294 50.000 0.00 0.00 35.43 3.85
5141 5544 5.061853 CGAAACTGATCCATCAATCCTCAT 58.938 41.667 0.00 0.00 36.18 2.90
5187 5591 0.251742 ATGCCAAGGCCACTGCTTAA 60.252 50.000 5.01 0.00 41.09 1.85
5369 5773 3.561143 TGTTGCCCTTTTAAGCTCTTCA 58.439 40.909 0.00 0.00 0.00 3.02
5472 5876 8.387190 TCATTGATAAAATCGCTGATCTCAAT 57.613 30.769 0.00 0.00 33.60 2.57
5654 6091 3.369381 CCGTAGGCAGTCATTCCAG 57.631 57.895 0.00 0.00 46.14 3.86
5995 6432 4.321082 GGAAGTAGTTACACAAGCTCTCGT 60.321 45.833 0.00 0.00 0.00 4.18
6082 6519 1.066587 CCGTTGATCTCCTCCTCGC 59.933 63.158 0.00 0.00 0.00 5.03
6219 9072 3.562182 TCTCATACTCAACGGCTGGATA 58.438 45.455 0.00 0.00 0.00 2.59
6288 9141 1.667724 GCTGCGCTGAGATGTTACATT 59.332 47.619 19.32 0.00 0.00 2.71
6423 9276 5.277250 CGGTGCTGCAAAATACAATTTTTGT 60.277 36.000 2.77 0.00 44.62 2.83
6430 9283 2.226330 AGACGGTGCTGCAAAATACAA 58.774 42.857 2.77 0.00 0.00 2.41
6434 9287 2.778299 TCTAAGACGGTGCTGCAAAAT 58.222 42.857 2.77 0.00 0.00 1.82
6447 9300 7.654116 GCCTTACAAGATAAGGTGATCTAAGAC 59.346 40.741 13.01 0.00 44.46 3.01
6495 9348 8.623903 AGATGGTACTGCATAATACATTTTGTG 58.376 33.333 0.00 0.00 0.00 3.33
6528 9385 5.886960 AAGATGGAACTGTATGCTCAAAC 57.113 39.130 0.00 0.00 0.00 2.93
6581 9440 7.864379 GCAATATATCAAGGATGAAACACCAAG 59.136 37.037 0.00 0.00 39.49 3.61
6584 9443 7.013655 AGTGCAATATATCAAGGATGAAACACC 59.986 37.037 0.00 0.00 39.49 4.16
6602 9461 5.817296 GGATGTGTGTTGATAGAGTGCAATA 59.183 40.000 0.00 0.00 0.00 1.90
6605 9464 3.599343 GGATGTGTGTTGATAGAGTGCA 58.401 45.455 0.00 0.00 0.00 4.57
6615 9474 1.608055 TCAGCAAGGGATGTGTGTTG 58.392 50.000 0.00 0.00 0.00 3.33
6660 9519 9.103861 GAGAAATATACTTATAGCAGGAATGGC 57.896 37.037 0.00 0.00 0.00 4.40
6743 9606 7.500892 TGACTAAAGGAAGATGCAAAACACTTA 59.499 33.333 0.00 0.00 0.00 2.24
6810 9677 1.902508 CAGACATGACACCCTACACCT 59.097 52.381 0.00 0.00 0.00 4.00
6821 9688 0.036577 ACAGCAGAGCCAGACATGAC 60.037 55.000 0.00 0.00 0.00 3.06
6854 9729 7.206981 CTGAAAGCACCTTCATTCTAGAAAA 57.793 36.000 9.71 0.00 34.86 2.29
6997 9872 9.679661 ATGTCAGTAATATGTGTACAAATCCAA 57.320 29.630 0.52 0.00 0.00 3.53
7056 9931 3.006859 TGACAGCTTCATCGAAGGAAGAA 59.993 43.478 25.63 9.79 43.46 2.52
7074 9949 0.391528 CTGATGATGCCGGTGTGACA 60.392 55.000 1.90 0.00 0.00 3.58
7075 9950 1.091771 CCTGATGATGCCGGTGTGAC 61.092 60.000 1.90 0.00 0.00 3.67
7076 9951 1.221566 CCTGATGATGCCGGTGTGA 59.778 57.895 1.90 0.00 0.00 3.58
7077 9952 1.091771 GTCCTGATGATGCCGGTGTG 61.092 60.000 1.90 0.00 0.00 3.82
7078 9953 1.221840 GTCCTGATGATGCCGGTGT 59.778 57.895 1.90 0.00 0.00 4.16
7079 9954 1.524621 GGTCCTGATGATGCCGGTG 60.525 63.158 1.90 0.00 0.00 4.94
7080 9955 1.690633 AGGTCCTGATGATGCCGGT 60.691 57.895 1.90 0.00 0.00 5.28
7081 9956 1.227764 CAGGTCCTGATGATGCCGG 60.228 63.158 14.26 0.00 32.44 6.13
7082 9957 1.825341 TCAGGTCCTGATGATGCCG 59.175 57.895 18.15 0.00 35.39 5.69
7090 9965 2.659063 CCACCGCATCAGGTCCTGA 61.659 63.158 23.92 23.92 43.89 3.86
7091 9966 2.124983 CCACCGCATCAGGTCCTG 60.125 66.667 13.21 13.21 43.89 3.86
7092 9967 2.284625 TCCACCGCATCAGGTCCT 60.285 61.111 0.00 0.00 43.89 3.85
7093 9968 2.125106 GTCCACCGCATCAGGTCC 60.125 66.667 0.00 0.00 43.89 4.46
7094 9969 2.509336 CGTCCACCGCATCAGGTC 60.509 66.667 0.00 0.00 43.89 3.85
7096 9971 2.815211 CACGTCCACCGCATCAGG 60.815 66.667 0.00 0.00 41.42 3.86
7097 9972 2.048222 ACACGTCCACCGCATCAG 60.048 61.111 0.00 0.00 41.42 2.90
7098 9973 2.166130 ATCACACGTCCACCGCATCA 62.166 55.000 0.00 0.00 41.42 3.07
7099 9974 1.019278 AATCACACGTCCACCGCATC 61.019 55.000 0.00 0.00 41.42 3.91
7100 9975 1.003839 AATCACACGTCCACCGCAT 60.004 52.632 0.00 0.00 41.42 4.73
7101 9976 1.666553 GAATCACACGTCCACCGCA 60.667 57.895 0.00 0.00 41.42 5.69
7102 9977 2.726691 CGAATCACACGTCCACCGC 61.727 63.158 0.00 0.00 41.42 5.68
7103 9978 2.092291 CCGAATCACACGTCCACCG 61.092 63.158 0.00 0.00 44.03 4.94
7104 9979 1.005394 ACCGAATCACACGTCCACC 60.005 57.895 0.00 0.00 0.00 4.61
7105 9980 1.289109 CCACCGAATCACACGTCCAC 61.289 60.000 0.00 0.00 0.00 4.02
7106 9981 1.005512 CCACCGAATCACACGTCCA 60.006 57.895 0.00 0.00 0.00 4.02
7107 9982 1.740296 CCCACCGAATCACACGTCC 60.740 63.158 0.00 0.00 0.00 4.79
7108 9983 2.388232 GCCCACCGAATCACACGTC 61.388 63.158 0.00 0.00 0.00 4.34
7109 9984 2.358247 GCCCACCGAATCACACGT 60.358 61.111 0.00 0.00 0.00 4.49
7110 9985 3.124921 GGCCCACCGAATCACACG 61.125 66.667 0.00 0.00 0.00 4.49
7111 9986 2.750237 GGGCCCACCGAATCACAC 60.750 66.667 19.95 0.00 36.48 3.82
7112 9987 4.041762 GGGGCCCACCGAATCACA 62.042 66.667 26.86 0.00 41.60 3.58
7134 10009 3.000819 TGGGTCCGTGCCAGTAGG 61.001 66.667 0.00 0.00 38.23 3.18
7135 10010 2.264794 GTGGGTCCGTGCCAGTAG 59.735 66.667 0.00 0.00 0.00 2.57
7136 10011 3.315949 GGTGGGTCCGTGCCAGTA 61.316 66.667 0.00 0.00 0.00 2.74
7138 10013 4.704833 CAGGTGGGTCCGTGCCAG 62.705 72.222 0.00 0.00 41.99 4.85
7140 10015 2.798148 CTTACAGGTGGGTCCGTGCC 62.798 65.000 0.00 0.00 41.99 5.01
7141 10016 1.375523 CTTACAGGTGGGTCCGTGC 60.376 63.158 0.00 0.00 41.99 5.34
7142 10017 1.295423 CCTTACAGGTGGGTCCGTG 59.705 63.158 0.00 0.00 41.99 4.94
7143 10018 2.590114 GCCTTACAGGTGGGTCCGT 61.590 63.158 0.00 0.00 41.99 4.69
7144 10019 2.267961 GCCTTACAGGTGGGTCCG 59.732 66.667 0.00 0.00 41.99 4.79
7145 10020 2.240162 CTCGCCTTACAGGTGGGTCC 62.240 65.000 3.52 0.00 45.74 4.46
7146 10021 1.218316 CTCGCCTTACAGGTGGGTC 59.782 63.158 3.52 0.00 45.74 4.46
7147 10022 3.388841 CTCGCCTTACAGGTGGGT 58.611 61.111 3.52 0.00 45.74 4.51
7149 10024 1.298859 GCAACTCGCCTTACAGGTGG 61.299 60.000 3.52 0.00 45.74 4.61
7151 10026 4.695560 GCAACTCGCCTTACAGGT 57.304 55.556 0.00 0.00 37.80 4.00
7160 10035 1.658409 GCAACACTTGGCAACTCGC 60.658 57.895 0.00 0.00 41.28 5.03
7161 10036 4.614673 GCAACACTTGGCAACTCG 57.385 55.556 0.00 0.00 37.61 4.18
7168 10043 2.418368 TATAGCCAGGCAACACTTGG 57.582 50.000 15.80 0.00 41.41 3.61
7169 10044 3.499918 GCTATATAGCCAGGCAACACTTG 59.500 47.826 22.02 0.00 43.39 3.16
7170 10045 3.744660 GCTATATAGCCAGGCAACACTT 58.255 45.455 22.02 0.00 43.39 3.16
7171 10046 3.409026 GCTATATAGCCAGGCAACACT 57.591 47.619 22.02 0.00 43.39 3.55
7182 10057 1.470632 CGCTCCAGCTGGCTATATAGC 60.471 57.143 28.91 26.52 42.95 2.97
7183 10058 2.095461 TCGCTCCAGCTGGCTATATAG 58.905 52.381 28.91 19.32 39.32 1.31
7184 10059 2.095461 CTCGCTCCAGCTGGCTATATA 58.905 52.381 28.91 8.76 39.32 0.86
7185 10060 0.894141 CTCGCTCCAGCTGGCTATAT 59.106 55.000 28.91 0.00 39.32 0.86
7186 10061 0.468214 ACTCGCTCCAGCTGGCTATA 60.468 55.000 28.91 9.99 39.32 1.31
7187 10062 0.468214 TACTCGCTCCAGCTGGCTAT 60.468 55.000 28.91 11.88 39.32 2.97
7188 10063 1.076995 TACTCGCTCCAGCTGGCTA 60.077 57.895 28.91 11.22 39.32 3.93
7189 10064 2.363018 TACTCGCTCCAGCTGGCT 60.363 61.111 28.91 7.87 39.32 4.75
7190 10065 2.105930 CTACTCGCTCCAGCTGGC 59.894 66.667 28.91 16.30 39.32 4.85
7191 10066 2.055042 ACCTACTCGCTCCAGCTGG 61.055 63.158 27.87 27.87 39.32 4.85
7192 10067 1.140589 CACCTACTCGCTCCAGCTG 59.859 63.158 6.78 6.78 39.32 4.24
7193 10068 1.304547 ACACCTACTCGCTCCAGCT 60.305 57.895 0.00 0.00 39.32 4.24
7194 10069 1.153745 CACACCTACTCGCTCCAGC 60.154 63.158 0.00 0.00 37.78 4.85
7195 10070 1.153745 GCACACCTACTCGCTCCAG 60.154 63.158 0.00 0.00 0.00 3.86
7196 10071 2.970639 GCACACCTACTCGCTCCA 59.029 61.111 0.00 0.00 0.00 3.86
7197 10072 2.202623 CGCACACCTACTCGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
7198 10073 1.801913 CACGCACACCTACTCGCTC 60.802 63.158 0.00 0.00 0.00 5.03
7199 10074 2.258591 CACGCACACCTACTCGCT 59.741 61.111 0.00 0.00 0.00 4.93
7200 10075 2.049433 ACACGCACACCTACTCGC 60.049 61.111 0.00 0.00 0.00 5.03
7201 10076 0.239082 TACACACGCACACCTACTCG 59.761 55.000 0.00 0.00 0.00 4.18
7202 10077 1.538512 TCTACACACGCACACCTACTC 59.461 52.381 0.00 0.00 0.00 2.59
7203 10078 1.612676 TCTACACACGCACACCTACT 58.387 50.000 0.00 0.00 0.00 2.57
7204 10079 2.427232 TTCTACACACGCACACCTAC 57.573 50.000 0.00 0.00 0.00 3.18
7205 10080 3.671008 ATTTCTACACACGCACACCTA 57.329 42.857 0.00 0.00 0.00 3.08
7206 10081 2.543777 ATTTCTACACACGCACACCT 57.456 45.000 0.00 0.00 0.00 4.00
7207 10082 4.153475 ACATAATTTCTACACACGCACACC 59.847 41.667 0.00 0.00 0.00 4.16
7208 10083 5.107259 TGACATAATTTCTACACACGCACAC 60.107 40.000 0.00 0.00 0.00 3.82
7209 10084 4.991687 TGACATAATTTCTACACACGCACA 59.008 37.500 0.00 0.00 0.00 4.57
7210 10085 5.524511 TGACATAATTTCTACACACGCAC 57.475 39.130 0.00 0.00 0.00 5.34
7211 10086 5.699001 ACTTGACATAATTTCTACACACGCA 59.301 36.000 0.00 0.00 0.00 5.24
7212 10087 6.090898 AGACTTGACATAATTTCTACACACGC 59.909 38.462 0.00 0.00 0.00 5.34
7213 10088 7.542477 AGAGACTTGACATAATTTCTACACACG 59.458 37.037 0.00 0.00 0.00 4.49
7214 10089 8.651588 CAGAGACTTGACATAATTTCTACACAC 58.348 37.037 0.00 0.00 0.00 3.82
7215 10090 8.585018 TCAGAGACTTGACATAATTTCTACACA 58.415 33.333 0.00 0.00 0.00 3.72
7216 10091 8.988064 TCAGAGACTTGACATAATTTCTACAC 57.012 34.615 0.00 0.00 0.00 2.90
7217 10092 9.424319 GTTCAGAGACTTGACATAATTTCTACA 57.576 33.333 0.00 0.00 0.00 2.74
7218 10093 8.874816 GGTTCAGAGACTTGACATAATTTCTAC 58.125 37.037 0.00 0.00 0.00 2.59
7219 10094 8.816894 AGGTTCAGAGACTTGACATAATTTCTA 58.183 33.333 0.00 0.00 0.00 2.10
7220 10095 7.684529 AGGTTCAGAGACTTGACATAATTTCT 58.315 34.615 0.00 0.00 0.00 2.52
7221 10096 7.821846 AGAGGTTCAGAGACTTGACATAATTTC 59.178 37.037 0.00 0.00 0.00 2.17
7222 10097 7.684529 AGAGGTTCAGAGACTTGACATAATTT 58.315 34.615 0.00 0.00 0.00 1.82
7223 10098 7.038729 TGAGAGGTTCAGAGACTTGACATAATT 60.039 37.037 0.00 0.00 0.00 1.40
7224 10099 6.438741 TGAGAGGTTCAGAGACTTGACATAAT 59.561 38.462 0.00 0.00 0.00 1.28
7225 10100 5.775195 TGAGAGGTTCAGAGACTTGACATAA 59.225 40.000 0.00 0.00 0.00 1.90
7226 10101 5.184096 GTGAGAGGTTCAGAGACTTGACATA 59.816 44.000 0.00 0.00 36.21 2.29
7227 10102 4.021544 GTGAGAGGTTCAGAGACTTGACAT 60.022 45.833 0.00 0.00 36.21 3.06
7228 10103 3.319405 GTGAGAGGTTCAGAGACTTGACA 59.681 47.826 0.00 0.00 36.21 3.58
7229 10104 3.305744 GGTGAGAGGTTCAGAGACTTGAC 60.306 52.174 0.00 0.00 36.21 3.18
7230 10105 2.894126 GGTGAGAGGTTCAGAGACTTGA 59.106 50.000 0.00 0.00 36.21 3.02
7231 10106 2.896685 AGGTGAGAGGTTCAGAGACTTG 59.103 50.000 0.00 0.00 36.21 3.16
7232 10107 3.252554 AGGTGAGAGGTTCAGAGACTT 57.747 47.619 0.00 0.00 36.21 3.01
7233 10108 2.990740 AGGTGAGAGGTTCAGAGACT 57.009 50.000 0.00 0.00 36.21 3.24
7234 10109 4.953579 AGATTAGGTGAGAGGTTCAGAGAC 59.046 45.833 0.00 0.00 36.21 3.36
7235 10110 4.952957 CAGATTAGGTGAGAGGTTCAGAGA 59.047 45.833 0.00 0.00 36.21 3.10
7236 10111 4.709397 ACAGATTAGGTGAGAGGTTCAGAG 59.291 45.833 0.00 0.00 36.21 3.35
7237 10112 4.678256 ACAGATTAGGTGAGAGGTTCAGA 58.322 43.478 0.00 0.00 36.21 3.27
7238 10113 5.163499 GGTACAGATTAGGTGAGAGGTTCAG 60.163 48.000 0.00 0.00 36.21 3.02
7239 10114 4.710375 GGTACAGATTAGGTGAGAGGTTCA 59.290 45.833 0.00 0.00 0.00 3.18
7240 10115 4.957327 AGGTACAGATTAGGTGAGAGGTTC 59.043 45.833 0.00 0.00 0.00 3.62
7241 10116 4.949121 AGGTACAGATTAGGTGAGAGGTT 58.051 43.478 0.00 0.00 0.00 3.50
7242 10117 4.538738 GAGGTACAGATTAGGTGAGAGGT 58.461 47.826 0.00 0.00 0.00 3.85
7243 10118 3.892588 GGAGGTACAGATTAGGTGAGAGG 59.107 52.174 0.00 0.00 0.00 3.69
7244 10119 4.798882 AGGAGGTACAGATTAGGTGAGAG 58.201 47.826 0.00 0.00 0.00 3.20
7245 10120 4.386536 GGAGGAGGTACAGATTAGGTGAGA 60.387 50.000 0.00 0.00 0.00 3.27
7246 10121 3.892588 GGAGGAGGTACAGATTAGGTGAG 59.107 52.174 0.00 0.00 0.00 3.51
7247 10122 3.373877 GGGAGGAGGTACAGATTAGGTGA 60.374 52.174 0.00 0.00 0.00 4.02
7248 10123 2.966516 GGGAGGAGGTACAGATTAGGTG 59.033 54.545 0.00 0.00 0.00 4.00
7249 10124 2.866454 AGGGAGGAGGTACAGATTAGGT 59.134 50.000 0.00 0.00 0.00 3.08
7250 10125 3.621682 AGGGAGGAGGTACAGATTAGG 57.378 52.381 0.00 0.00 0.00 2.69
7251 10126 3.643792 CCAAGGGAGGAGGTACAGATTAG 59.356 52.174 0.00 0.00 0.00 1.73
7252 10127 3.273886 TCCAAGGGAGGAGGTACAGATTA 59.726 47.826 0.00 0.00 32.77 1.75
7253 10128 2.045885 TCCAAGGGAGGAGGTACAGATT 59.954 50.000 0.00 0.00 32.77 2.40
7254 10129 1.651770 TCCAAGGGAGGAGGTACAGAT 59.348 52.381 0.00 0.00 32.77 2.90
7255 10130 1.089978 TCCAAGGGAGGAGGTACAGA 58.910 55.000 0.00 0.00 32.77 3.41
7256 10131 1.952621 TTCCAAGGGAGGAGGTACAG 58.047 55.000 0.00 0.00 39.25 2.74
7257 10132 2.158066 TCTTTCCAAGGGAGGAGGTACA 60.158 50.000 0.00 0.00 39.25 2.90
7258 10133 2.547990 TCTTTCCAAGGGAGGAGGTAC 58.452 52.381 0.00 0.00 39.25 3.34
7259 10134 3.285290 TTCTTTCCAAGGGAGGAGGTA 57.715 47.619 0.00 0.00 39.25 3.08
7260 10135 2.133858 TTCTTTCCAAGGGAGGAGGT 57.866 50.000 0.00 0.00 39.25 3.85
7261 10136 3.625853 GATTTCTTTCCAAGGGAGGAGG 58.374 50.000 0.00 0.00 39.25 4.30
7262 10137 3.625853 GGATTTCTTTCCAAGGGAGGAG 58.374 50.000 0.00 0.00 39.25 3.69
7263 10138 2.311841 GGGATTTCTTTCCAAGGGAGGA 59.688 50.000 0.00 0.00 37.53 3.71
7264 10139 2.624293 GGGGATTTCTTTCCAAGGGAGG 60.624 54.545 0.00 0.00 37.53 4.30
7265 10140 2.624293 GGGGGATTTCTTTCCAAGGGAG 60.624 54.545 0.00 0.00 37.53 4.30
7266 10141 1.361197 GGGGGATTTCTTTCCAAGGGA 59.639 52.381 0.00 0.00 37.53 4.20
7267 10142 1.362584 AGGGGGATTTCTTTCCAAGGG 59.637 52.381 0.00 0.00 37.53 3.95
7268 10143 2.928036 AGGGGGATTTCTTTCCAAGG 57.072 50.000 0.00 0.00 37.53 3.61
7269 10144 4.019858 GAGAAGGGGGATTTCTTTCCAAG 58.980 47.826 0.00 0.00 37.53 3.61
7270 10145 3.245622 GGAGAAGGGGGATTTCTTTCCAA 60.246 47.826 0.00 0.00 37.53 3.53
7271 10146 2.311841 GGAGAAGGGGGATTTCTTTCCA 59.688 50.000 0.00 0.00 37.53 3.53
7272 10147 2.311841 TGGAGAAGGGGGATTTCTTTCC 59.688 50.000 0.00 0.00 35.14 3.13
7273 10148 3.739401 TGGAGAAGGGGGATTTCTTTC 57.261 47.619 0.00 0.00 35.14 2.62
7274 10149 3.402708 ACTTGGAGAAGGGGGATTTCTTT 59.597 43.478 0.00 0.00 35.14 2.52
7275 10150 2.996742 ACTTGGAGAAGGGGGATTTCTT 59.003 45.455 0.00 0.00 35.14 2.52
7276 10151 2.578480 GACTTGGAGAAGGGGGATTTCT 59.422 50.000 0.00 0.00 37.59 2.52
7277 10152 2.578480 AGACTTGGAGAAGGGGGATTTC 59.422 50.000 0.00 0.00 32.95 2.17
7278 10153 2.578480 GAGACTTGGAGAAGGGGGATTT 59.422 50.000 0.00 0.00 32.95 2.17
7279 10154 2.200955 GAGACTTGGAGAAGGGGGATT 58.799 52.381 0.00 0.00 32.95 3.01
7280 10155 1.886422 GAGACTTGGAGAAGGGGGAT 58.114 55.000 0.00 0.00 32.95 3.85
7281 10156 0.614979 CGAGACTTGGAGAAGGGGGA 60.615 60.000 0.00 0.00 32.95 4.81
7282 10157 0.614979 TCGAGACTTGGAGAAGGGGG 60.615 60.000 0.00 0.00 32.95 5.40
7283 10158 1.410882 GATCGAGACTTGGAGAAGGGG 59.589 57.143 0.00 0.00 32.95 4.79
7284 10159 2.360801 GAGATCGAGACTTGGAGAAGGG 59.639 54.545 0.00 0.00 32.95 3.95
7285 10160 3.020274 TGAGATCGAGACTTGGAGAAGG 58.980 50.000 0.00 0.00 32.95 3.46
7286 10161 3.181491 GGTGAGATCGAGACTTGGAGAAG 60.181 52.174 0.00 0.00 35.07 2.85
7287 10162 2.755655 GGTGAGATCGAGACTTGGAGAA 59.244 50.000 0.00 0.00 0.00 2.87
7288 10163 2.370349 GGTGAGATCGAGACTTGGAGA 58.630 52.381 0.00 0.00 0.00 3.71
7289 10164 1.407258 GGGTGAGATCGAGACTTGGAG 59.593 57.143 0.00 0.00 0.00 3.86
7290 10165 1.475403 GGGTGAGATCGAGACTTGGA 58.525 55.000 0.00 0.00 0.00 3.53
7291 10166 0.461961 GGGGTGAGATCGAGACTTGG 59.538 60.000 0.00 0.00 0.00 3.61
7292 10167 0.461961 GGGGGTGAGATCGAGACTTG 59.538 60.000 0.00 0.00 0.00 3.16
7293 10168 2.903404 GGGGGTGAGATCGAGACTT 58.097 57.895 0.00 0.00 0.00 3.01
7294 10169 4.688770 GGGGGTGAGATCGAGACT 57.311 61.111 0.00 0.00 0.00 3.24
7309 10184 2.770048 ATCGGAGAGGGCAAGGGG 60.770 66.667 0.00 0.00 43.63 4.79
7310 10185 2.812619 GGATCGGAGAGGGCAAGGG 61.813 68.421 0.00 0.00 43.63 3.95
7311 10186 2.812619 GGGATCGGAGAGGGCAAGG 61.813 68.421 0.00 0.00 43.63 3.61
7312 10187 1.341156 AAGGGATCGGAGAGGGCAAG 61.341 60.000 0.00 0.00 43.63 4.01
7313 10188 1.306997 AAGGGATCGGAGAGGGCAA 60.307 57.895 0.00 0.00 43.63 4.52
7314 10189 2.066393 CAAGGGATCGGAGAGGGCA 61.066 63.158 0.00 0.00 43.63 5.36
7315 10190 2.825264 CAAGGGATCGGAGAGGGC 59.175 66.667 0.00 0.00 43.63 5.19
7316 10191 1.626356 TTGCAAGGGATCGGAGAGGG 61.626 60.000 0.00 0.00 43.63 4.30
7317 10192 0.179062 CTTGCAAGGGATCGGAGAGG 60.179 60.000 19.14 0.00 43.63 3.69
7318 10193 0.179062 CCTTGCAAGGGATCGGAGAG 60.179 60.000 34.08 7.56 41.07 3.20
7319 10194 0.617535 TCCTTGCAAGGGATCGGAGA 60.618 55.000 38.60 18.87 46.47 3.71
7320 10195 0.471617 ATCCTTGCAAGGGATCGGAG 59.528 55.000 38.60 15.88 46.47 4.63
7321 10196 0.181114 CATCCTTGCAAGGGATCGGA 59.819 55.000 38.60 22.93 46.47 4.55
7322 10197 0.181114 TCATCCTTGCAAGGGATCGG 59.819 55.000 38.60 24.59 46.47 4.18
7323 10198 1.590932 CTCATCCTTGCAAGGGATCG 58.409 55.000 38.60 25.49 46.47 3.69
7324 10199 1.133853 AGCTCATCCTTGCAAGGGATC 60.134 52.381 38.60 25.59 46.47 3.36
7325 10200 0.924823 AGCTCATCCTTGCAAGGGAT 59.075 50.000 38.60 27.92 46.47 3.85
7326 10201 0.254178 GAGCTCATCCTTGCAAGGGA 59.746 55.000 38.60 28.55 46.47 4.20
7327 10202 1.094073 CGAGCTCATCCTTGCAAGGG 61.094 60.000 38.60 26.29 46.47 3.95
7329 10204 0.725686 CACGAGCTCATCCTTGCAAG 59.274 55.000 19.93 19.93 0.00 4.01
7330 10205 0.321346 TCACGAGCTCATCCTTGCAA 59.679 50.000 15.40 0.00 0.00 4.08
7331 10206 0.390340 GTCACGAGCTCATCCTTGCA 60.390 55.000 15.40 0.00 0.00 4.08
7332 10207 0.390340 TGTCACGAGCTCATCCTTGC 60.390 55.000 15.40 0.00 0.00 4.01
7333 10208 2.306341 ATGTCACGAGCTCATCCTTG 57.694 50.000 15.40 2.39 0.00 3.61
7334 10209 3.005554 CAAATGTCACGAGCTCATCCTT 58.994 45.455 15.40 0.00 0.00 3.36
7335 10210 2.625737 CAAATGTCACGAGCTCATCCT 58.374 47.619 15.40 0.00 0.00 3.24
7336 10211 1.667724 CCAAATGTCACGAGCTCATCC 59.332 52.381 15.40 0.00 0.00 3.51
7337 10212 2.350522 ACCAAATGTCACGAGCTCATC 58.649 47.619 15.40 1.15 0.00 2.92
7338 10213 2.479566 ACCAAATGTCACGAGCTCAT 57.520 45.000 15.40 0.00 0.00 2.90
7339 10214 3.394674 TTACCAAATGTCACGAGCTCA 57.605 42.857 15.40 0.00 0.00 4.26
7340 10215 3.932710 TGATTACCAAATGTCACGAGCTC 59.067 43.478 2.73 2.73 0.00 4.09
7341 10216 3.935203 CTGATTACCAAATGTCACGAGCT 59.065 43.478 0.00 0.00 0.00 4.09
7342 10217 3.932710 TCTGATTACCAAATGTCACGAGC 59.067 43.478 0.00 0.00 0.00 5.03
7343 10218 4.033358 GCTCTGATTACCAAATGTCACGAG 59.967 45.833 0.00 0.00 0.00 4.18
7344 10219 3.932710 GCTCTGATTACCAAATGTCACGA 59.067 43.478 0.00 0.00 0.00 4.35
7345 10220 3.935203 AGCTCTGATTACCAAATGTCACG 59.065 43.478 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.