Multiple sequence alignment - TraesCS7A01G424200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G424200 chr7A 100.000 2681 0 0 1 2681 617434196 617436876 0.000000e+00 4951.0
1 TraesCS7A01G424200 chr7A 93.333 45 0 3 1812 1854 617435975 617436018 2.230000e-06 63.9
2 TraesCS7A01G424200 chr7A 93.333 45 0 3 1780 1823 617436007 617436049 2.230000e-06 63.9
3 TraesCS7A01G424200 chr7D 93.434 792 34 9 984 1763 535906581 535905796 0.000000e+00 1158.0
4 TraesCS7A01G424200 chr7D 91.504 718 36 13 285 990 535907315 535906611 0.000000e+00 965.0
5 TraesCS7A01G424200 chr7D 93.645 299 14 4 1 296 535907646 535907350 2.450000e-120 442.0
6 TraesCS7A01G424200 chr7D 81.140 456 58 14 2171 2609 535905495 535905051 9.190000e-90 340.0
7 TraesCS7A01G424200 chr7B 91.429 700 39 6 984 1683 578385608 578384930 0.000000e+00 941.0
8 TraesCS7A01G424200 chr7B 89.344 488 43 2 285 763 578386391 578385904 2.950000e-169 604.0
9 TraesCS7A01G424200 chr7B 92.333 300 14 8 1 297 578386706 578386413 4.130000e-113 418.0
10 TraesCS7A01G424200 chr7B 82.567 413 39 18 2282 2665 578385007 578384599 1.540000e-87 333.0
11 TraesCS7A01G424200 chr7B 90.948 232 3 11 765 990 578385857 578385638 2.020000e-76 296.0
12 TraesCS7A01G424200 chr7B 95.312 64 3 0 1824 1887 578294639 578294576 4.720000e-18 102.0
13 TraesCS7A01G424200 chr7B 79.021 143 15 14 160 298 15929139 15929270 1.710000e-12 84.2
14 TraesCS7A01G424200 chr6B 91.156 147 13 0 1968 2114 650917182 650917328 1.630000e-47 200.0
15 TraesCS7A01G424200 chr5A 91.096 146 13 0 1970 2115 579851214 579851069 5.850000e-47 198.0
16 TraesCS7A01G424200 chr5B 90.541 148 14 0 1967 2114 54712601 54712454 2.110000e-46 196.0
17 TraesCS7A01G424200 chr3D 91.034 145 13 0 1970 2114 299088397 299088253 2.110000e-46 196.0
18 TraesCS7A01G424200 chr3A 88.750 160 16 2 1969 2127 97192111 97191953 7.570000e-46 195.0
19 TraesCS7A01G424200 chr3A 92.000 50 3 1 90 138 7219734 7219783 4.790000e-08 69.4
20 TraesCS7A01G424200 chr3B 90.476 147 13 1 1969 2114 354658132 354658278 2.720000e-45 193.0
21 TraesCS7A01G424200 chr3B 76.364 220 29 18 104 311 655022263 655022055 2.200000e-16 97.1
22 TraesCS7A01G424200 chr2B 90.476 147 13 1 1971 2116 117612647 117612501 2.720000e-45 193.0
23 TraesCS7A01G424200 chr6A 90.345 145 13 1 1970 2114 234184198 234184341 3.520000e-44 189.0
24 TraesCS7A01G424200 chr2A 89.116 147 16 0 1971 2117 76350801 76350655 1.640000e-42 183.0
25 TraesCS7A01G424200 chr1D 80.645 155 22 8 6 157 462304684 462304833 2.180000e-21 113.0
26 TraesCS7A01G424200 chr1D 77.778 135 18 9 9 136 392942805 392942934 3.700000e-09 73.1
27 TraesCS7A01G424200 chr2D 85.000 100 12 3 201 298 5304771 5304869 6.110000e-17 99.0
28 TraesCS7A01G424200 chr2D 77.500 160 21 12 102 255 343131302 343131452 6.150000e-12 82.4
29 TraesCS7A01G424200 chr1A 84.848 99 10 5 214 309 305603519 305603615 7.900000e-16 95.3
30 TraesCS7A01G424200 chr1B 83.495 103 11 6 194 295 637481950 637482047 1.020000e-14 91.6
31 TraesCS7A01G424200 chr6D 82.243 107 9 9 191 292 6481594 6481695 1.710000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G424200 chr7A 617434196 617436876 2680 False 1692.933333 4951 95.555333 1 2681 3 chr7A.!!$F1 2680
1 TraesCS7A01G424200 chr7D 535905051 535907646 2595 True 726.250000 1158 89.930750 1 2609 4 chr7D.!!$R1 2608
2 TraesCS7A01G424200 chr7B 578384599 578386706 2107 True 518.400000 941 89.324200 1 2665 5 chr7B.!!$R2 2664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1100 3.06732 GCCATCTAAACCAAGAGCAATCC 59.933 47.826 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2673 0.034756 ACATCAGCGGCACACTACAA 59.965 50.0 1.45 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 7.614192 TCTTTCTCTGGTTTTGTAAGGTTTTCT 59.386 33.333 0.00 0.00 0.00 2.52
359 411 8.615878 AAACTATGCGGATATTTGCTTACATA 57.384 30.769 0.00 0.00 0.00 2.29
430 482 7.418408 TGCGTGAACATTTTCTAAATGTAACA 58.582 30.769 15.74 15.18 39.73 2.41
526 578 8.931385 TTTGATTAGATTGCATAGCTTTTTCC 57.069 30.769 0.00 0.00 0.00 3.13
535 587 6.040209 TGCATAGCTTTTTCCAAATGTCAT 57.960 33.333 0.00 0.00 0.00 3.06
710 770 9.961264 TGTGTATTTTGTACTGTCCCAAATATA 57.039 29.630 6.44 0.00 31.20 0.86
935 1054 5.816258 AGCCGCTTCTATAAACCTAAGTTTC 59.184 40.000 0.00 0.00 42.67 2.78
936 1055 5.816258 GCCGCTTCTATAAACCTAAGTTTCT 59.184 40.000 0.00 0.00 42.67 2.52
937 1056 6.982724 GCCGCTTCTATAAACCTAAGTTTCTA 59.017 38.462 0.00 0.00 42.67 2.10
939 1058 7.167136 CCGCTTCTATAAACCTAAGTTTCTACG 59.833 40.741 0.00 0.00 42.67 3.51
941 1060 9.235537 GCTTCTATAAACCTAAGTTTCTACGAG 57.764 37.037 0.00 0.00 42.67 4.18
943 1062 8.284945 TCTATAAACCTAAGTTTCTACGAGCA 57.715 34.615 0.00 0.00 42.67 4.26
944 1063 8.186821 TCTATAAACCTAAGTTTCTACGAGCAC 58.813 37.037 0.00 0.00 42.67 4.40
945 1064 4.868314 AACCTAAGTTTCTACGAGCACT 57.132 40.909 0.00 0.00 29.61 4.40
946 1065 5.972107 AACCTAAGTTTCTACGAGCACTA 57.028 39.130 0.00 0.00 29.61 2.74
947 1066 5.972107 ACCTAAGTTTCTACGAGCACTAA 57.028 39.130 0.00 0.00 0.00 2.24
948 1067 6.527057 ACCTAAGTTTCTACGAGCACTAAT 57.473 37.500 0.00 0.00 0.00 1.73
949 1068 6.562518 ACCTAAGTTTCTACGAGCACTAATC 58.437 40.000 0.00 0.00 0.00 1.75
950 1069 6.377712 ACCTAAGTTTCTACGAGCACTAATCT 59.622 38.462 0.00 0.00 0.00 2.40
951 1070 7.093858 ACCTAAGTTTCTACGAGCACTAATCTT 60.094 37.037 0.00 0.00 0.00 2.40
952 1071 7.432838 CCTAAGTTTCTACGAGCACTAATCTTC 59.567 40.741 0.00 0.00 0.00 2.87
953 1072 6.268825 AGTTTCTACGAGCACTAATCTTCA 57.731 37.500 0.00 0.00 0.00 3.02
954 1073 6.688578 AGTTTCTACGAGCACTAATCTTCAA 58.311 36.000 0.00 0.00 0.00 2.69
959 1078 6.975197 TCTACGAGCACTAATCTTCAATCAAG 59.025 38.462 0.00 0.00 0.00 3.02
965 1084 5.298777 GCACTAATCTTCAATCAAGCCATCT 59.701 40.000 0.00 0.00 31.26 2.90
973 1092 5.902613 TCAATCAAGCCATCTAAACCAAG 57.097 39.130 0.00 0.00 0.00 3.61
981 1100 3.067320 GCCATCTAAACCAAGAGCAATCC 59.933 47.826 0.00 0.00 0.00 3.01
1007 1162 1.302431 CAACCAGCACCATGGACGA 60.302 57.895 21.47 0.00 43.57 4.20
1119 1274 3.782443 GAGATCGGCCCCGTGGTT 61.782 66.667 6.61 0.00 40.74 3.67
1288 1449 4.711949 CGGAGCAGCAGCAAGGGT 62.712 66.667 3.17 0.00 45.49 4.34
1434 1595 1.739562 CCAGCTGCGTGAGTTCCTC 60.740 63.158 8.66 0.00 0.00 3.71
1709 1870 9.244799 GGTCAACTGTTTTATTTGTTTTCTAGG 57.755 33.333 0.00 0.00 0.00 3.02
1710 1871 9.797556 GTCAACTGTTTTATTTGTTTTCTAGGT 57.202 29.630 0.00 0.00 0.00 3.08
1714 1875 9.856162 ACTGTTTTATTTGTTTTCTAGGTAGGA 57.144 29.630 0.00 0.00 0.00 2.94
1768 1935 9.846248 ATATGCAGAAATTTAGAACTCAACAAC 57.154 29.630 0.00 0.00 0.00 3.32
1769 1936 7.333528 TGCAGAAATTTAGAACTCAACAACT 57.666 32.000 0.00 0.00 0.00 3.16
1770 1937 8.445275 TGCAGAAATTTAGAACTCAACAACTA 57.555 30.769 0.00 0.00 0.00 2.24
1771 1938 8.559536 TGCAGAAATTTAGAACTCAACAACTAG 58.440 33.333 0.00 0.00 0.00 2.57
1772 1939 8.017946 GCAGAAATTTAGAACTCAACAACTAGG 58.982 37.037 0.00 0.00 0.00 3.02
1773 1940 9.057089 CAGAAATTTAGAACTCAACAACTAGGT 57.943 33.333 0.00 0.00 0.00 3.08
1774 1941 9.274206 AGAAATTTAGAACTCAACAACTAGGTC 57.726 33.333 0.00 0.00 0.00 3.85
1775 1942 8.974060 AAATTTAGAACTCAACAACTAGGTCA 57.026 30.769 0.00 0.00 31.55 4.02
1776 1943 8.974060 AATTTAGAACTCAACAACTAGGTCAA 57.026 30.769 0.00 0.00 31.55 3.18
1777 1944 7.781548 TTTAGAACTCAACAACTAGGTCAAC 57.218 36.000 0.00 0.00 31.55 3.18
1778 1945 5.353394 AGAACTCAACAACTAGGTCAACA 57.647 39.130 0.00 0.00 31.55 3.33
1779 1946 5.930135 AGAACTCAACAACTAGGTCAACAT 58.070 37.500 0.00 0.00 31.55 2.71
1780 1947 7.062749 AGAACTCAACAACTAGGTCAACATA 57.937 36.000 0.00 0.00 31.55 2.29
1781 1948 7.506114 AGAACTCAACAACTAGGTCAACATAA 58.494 34.615 0.00 0.00 31.55 1.90
1782 1949 7.657761 AGAACTCAACAACTAGGTCAACATAAG 59.342 37.037 0.00 0.00 31.55 1.73
1783 1950 6.827727 ACTCAACAACTAGGTCAACATAAGT 58.172 36.000 0.00 0.00 0.00 2.24
1784 1951 7.959175 ACTCAACAACTAGGTCAACATAAGTA 58.041 34.615 0.00 0.00 0.00 2.24
1785 1952 7.871463 ACTCAACAACTAGGTCAACATAAGTAC 59.129 37.037 0.00 0.00 0.00 2.73
1786 1953 7.728148 TCAACAACTAGGTCAACATAAGTACA 58.272 34.615 0.00 0.00 0.00 2.90
1787 1954 8.372459 TCAACAACTAGGTCAACATAAGTACAT 58.628 33.333 0.00 0.00 0.00 2.29
1788 1955 9.647797 CAACAACTAGGTCAACATAAGTACATA 57.352 33.333 0.00 0.00 0.00 2.29
1790 1957 9.649167 ACAACTAGGTCAACATAAGTACATAAC 57.351 33.333 0.00 0.00 0.00 1.89
1791 1958 9.871238 CAACTAGGTCAACATAAGTACATAACT 57.129 33.333 0.00 0.00 41.49 2.24
1889 2056 9.829507 ACATAGTATAACTAACGACTCACTAGT 57.170 33.333 0.00 0.00 34.63 2.57
1893 2060 8.772705 AGTATAACTAACGACTCACTAGTATGC 58.227 37.037 0.00 0.00 35.56 3.14
1894 2061 4.533225 ACTAACGACTCACTAGTATGCG 57.467 45.455 0.00 0.00 35.56 4.73
1895 2062 4.186926 ACTAACGACTCACTAGTATGCGA 58.813 43.478 11.80 0.00 35.56 5.10
1897 2064 2.630158 ACGACTCACTAGTATGCGAGT 58.370 47.619 12.13 12.13 41.32 4.18
1900 2067 2.356382 GACTCACTAGTATGCGAGTGCT 59.644 50.000 17.14 6.51 44.51 4.40
1901 2068 2.356382 ACTCACTAGTATGCGAGTGCTC 59.644 50.000 17.14 0.00 44.51 4.26
1902 2069 2.356069 CTCACTAGTATGCGAGTGCTCA 59.644 50.000 17.14 2.25 44.51 4.26
1903 2070 2.952310 TCACTAGTATGCGAGTGCTCAT 59.048 45.455 17.14 0.00 44.51 2.90
1904 2071 4.134563 TCACTAGTATGCGAGTGCTCATA 58.865 43.478 17.14 0.00 44.51 2.15
1905 2072 4.023963 TCACTAGTATGCGAGTGCTCATAC 60.024 45.833 17.14 4.68 44.51 2.39
1910 2077 4.826500 GTATGCGAGTGCTCATACTTTTG 58.173 43.478 5.43 0.00 40.91 2.44
1911 2078 2.766313 TGCGAGTGCTCATACTTTTGT 58.234 42.857 0.00 0.00 43.34 2.83
1912 2079 2.736721 TGCGAGTGCTCATACTTTTGTC 59.263 45.455 0.00 0.00 43.34 3.18
1913 2080 2.094417 GCGAGTGCTCATACTTTTGTCC 59.906 50.000 0.00 0.00 38.39 4.02
1914 2081 3.325870 CGAGTGCTCATACTTTTGTCCA 58.674 45.455 0.00 0.00 0.00 4.02
1915 2082 3.369147 CGAGTGCTCATACTTTTGTCCAG 59.631 47.826 0.00 0.00 0.00 3.86
1916 2083 4.319177 GAGTGCTCATACTTTTGTCCAGT 58.681 43.478 0.00 0.00 0.00 4.00
1917 2084 4.067896 AGTGCTCATACTTTTGTCCAGTG 58.932 43.478 0.00 0.00 0.00 3.66
1918 2085 3.815401 GTGCTCATACTTTTGTCCAGTGT 59.185 43.478 0.00 0.00 0.00 3.55
1919 2086 4.275936 GTGCTCATACTTTTGTCCAGTGTT 59.724 41.667 0.00 0.00 0.00 3.32
1920 2087 5.468746 GTGCTCATACTTTTGTCCAGTGTTA 59.531 40.000 0.00 0.00 0.00 2.41
1921 2088 6.149474 GTGCTCATACTTTTGTCCAGTGTTAT 59.851 38.462 0.00 0.00 0.00 1.89
1922 2089 6.149308 TGCTCATACTTTTGTCCAGTGTTATG 59.851 38.462 0.00 0.00 0.00 1.90
1923 2090 6.149474 GCTCATACTTTTGTCCAGTGTTATGT 59.851 38.462 0.00 0.00 0.00 2.29
1924 2091 7.624344 GCTCATACTTTTGTCCAGTGTTATGTC 60.624 40.741 0.00 0.00 0.00 3.06
1925 2092 7.220740 TCATACTTTTGTCCAGTGTTATGTCA 58.779 34.615 0.00 0.00 0.00 3.58
1945 2112 4.857037 GTCAAAACACTTGACAAAGACACC 59.143 41.667 11.72 0.00 45.89 4.16
1947 2114 1.014352 ACACTTGACAAAGACACCGC 58.986 50.000 0.00 0.00 36.84 5.68
1948 2115 0.307760 CACTTGACAAAGACACCGCC 59.692 55.000 0.00 0.00 36.84 6.13
1949 2116 0.818040 ACTTGACAAAGACACCGCCC 60.818 55.000 0.00 0.00 36.84 6.13
1950 2117 1.515521 CTTGACAAAGACACCGCCCC 61.516 60.000 0.00 0.00 35.19 5.80
1951 2118 3.047877 GACAAAGACACCGCCCCG 61.048 66.667 0.00 0.00 0.00 5.73
1954 2121 4.324991 AAAGACACCGCCCCGACC 62.325 66.667 0.00 0.00 0.00 4.79
1967 2134 3.006728 CGACCCCCACAAGCCCTA 61.007 66.667 0.00 0.00 0.00 3.53
1968 2135 2.675371 GACCCCCACAAGCCCTAC 59.325 66.667 0.00 0.00 0.00 3.18
1969 2136 2.939353 ACCCCCACAAGCCCTACC 60.939 66.667 0.00 0.00 0.00 3.18
1970 2137 3.739613 CCCCCACAAGCCCTACCC 61.740 72.222 0.00 0.00 0.00 3.69
1971 2138 3.739613 CCCCACAAGCCCTACCCC 61.740 72.222 0.00 0.00 0.00 4.95
1972 2139 2.614013 CCCACAAGCCCTACCCCT 60.614 66.667 0.00 0.00 0.00 4.79
1973 2140 1.307517 CCCACAAGCCCTACCCCTA 60.308 63.158 0.00 0.00 0.00 3.53
1974 2141 0.917333 CCCACAAGCCCTACCCCTAA 60.917 60.000 0.00 0.00 0.00 2.69
1975 2142 0.546598 CCACAAGCCCTACCCCTAAG 59.453 60.000 0.00 0.00 0.00 2.18
1976 2143 0.546598 CACAAGCCCTACCCCTAAGG 59.453 60.000 0.00 0.00 43.78 2.69
1977 2144 1.279749 ACAAGCCCTACCCCTAAGGC 61.280 60.000 0.00 0.00 46.13 4.35
1979 2146 2.039724 GCCCTACCCCTAAGGCCT 60.040 66.667 0.00 0.00 40.58 5.19
1980 2147 1.696674 GCCCTACCCCTAAGGCCTT 60.697 63.158 24.18 24.18 40.58 4.35
1981 2148 1.996070 GCCCTACCCCTAAGGCCTTG 61.996 65.000 28.77 16.94 40.58 3.61
1982 2149 0.623617 CCCTACCCCTAAGGCCTTGT 60.624 60.000 28.77 18.90 40.58 3.16
1983 2150 1.296002 CCTACCCCTAAGGCCTTGTT 58.704 55.000 28.77 4.09 40.58 2.83
1984 2151 1.212195 CCTACCCCTAAGGCCTTGTTC 59.788 57.143 28.77 0.00 40.58 3.18
1985 2152 0.906775 TACCCCTAAGGCCTTGTTCG 59.093 55.000 28.77 14.68 40.58 3.95
1986 2153 1.077716 CCCCTAAGGCCTTGTTCGG 60.078 63.158 28.77 20.30 0.00 4.30
1987 2154 1.683441 CCCTAAGGCCTTGTTCGGT 59.317 57.895 28.77 1.45 0.00 4.69
1988 2155 0.037734 CCCTAAGGCCTTGTTCGGTT 59.962 55.000 28.77 0.57 0.00 4.44
1989 2156 1.279846 CCCTAAGGCCTTGTTCGGTTA 59.720 52.381 28.77 4.02 0.00 2.85
1990 2157 2.290450 CCCTAAGGCCTTGTTCGGTTAA 60.290 50.000 28.77 3.22 0.00 2.01
1991 2158 3.414269 CCTAAGGCCTTGTTCGGTTAAA 58.586 45.455 28.77 2.40 0.00 1.52
1992 2159 3.189910 CCTAAGGCCTTGTTCGGTTAAAC 59.810 47.826 28.77 0.00 0.00 2.01
1993 2160 1.612676 AGGCCTTGTTCGGTTAAACC 58.387 50.000 0.00 0.00 34.05 3.27
1994 2161 1.144298 AGGCCTTGTTCGGTTAAACCT 59.856 47.619 0.00 0.00 35.66 3.50
1995 2162 2.372837 AGGCCTTGTTCGGTTAAACCTA 59.627 45.455 0.00 0.00 35.66 3.08
1996 2163 3.009805 AGGCCTTGTTCGGTTAAACCTAT 59.990 43.478 0.00 0.00 35.66 2.57
1997 2164 3.376234 GGCCTTGTTCGGTTAAACCTATC 59.624 47.826 0.00 0.00 35.66 2.08
1998 2165 3.376234 GCCTTGTTCGGTTAAACCTATCC 59.624 47.826 0.00 0.00 35.66 2.59
1999 2166 4.840271 CCTTGTTCGGTTAAACCTATCCT 58.160 43.478 0.00 0.00 35.66 3.24
2000 2167 4.634443 CCTTGTTCGGTTAAACCTATCCTG 59.366 45.833 0.00 0.00 35.66 3.86
2001 2168 4.210724 TGTTCGGTTAAACCTATCCTGG 57.789 45.455 0.00 0.00 35.66 4.45
2002 2169 3.839490 TGTTCGGTTAAACCTATCCTGGA 59.161 43.478 0.00 0.00 35.66 3.86
2003 2170 4.081309 TGTTCGGTTAAACCTATCCTGGAG 60.081 45.833 1.52 0.00 35.66 3.86
2004 2171 3.036091 TCGGTTAAACCTATCCTGGAGG 58.964 50.000 1.52 1.00 40.22 4.30
2005 2172 2.104281 CGGTTAAACCTATCCTGGAGGG 59.896 54.545 14.50 14.50 38.52 4.30
2006 2173 2.442126 GGTTAAACCTATCCTGGAGGGG 59.558 54.545 18.59 16.32 38.52 4.79
2007 2174 3.390819 GTTAAACCTATCCTGGAGGGGA 58.609 50.000 20.07 5.66 38.52 4.81
2008 2175 2.918774 AAACCTATCCTGGAGGGGAT 57.081 50.000 20.07 9.06 46.60 3.85
2009 2176 2.918774 AACCTATCCTGGAGGGGATT 57.081 50.000 20.07 10.41 42.89 3.01
2010 2177 2.124560 ACCTATCCTGGAGGGGATTG 57.875 55.000 20.07 0.26 42.89 2.67
2011 2178 1.585592 ACCTATCCTGGAGGGGATTGA 59.414 52.381 20.07 0.00 42.89 2.57
2012 2179 2.021042 ACCTATCCTGGAGGGGATTGAA 60.021 50.000 20.07 0.00 42.89 2.69
2013 2180 2.641815 CCTATCCTGGAGGGGATTGAAG 59.358 54.545 11.00 0.00 42.89 3.02
2014 2181 2.594536 ATCCTGGAGGGGATTGAAGA 57.405 50.000 1.52 0.00 42.89 2.87
2015 2182 1.885049 TCCTGGAGGGGATTGAAGAG 58.115 55.000 0.00 0.00 35.41 2.85
2016 2183 0.842635 CCTGGAGGGGATTGAAGAGG 59.157 60.000 0.00 0.00 0.00 3.69
2017 2184 1.589414 CTGGAGGGGATTGAAGAGGT 58.411 55.000 0.00 0.00 0.00 3.85
2018 2185 1.918957 CTGGAGGGGATTGAAGAGGTT 59.081 52.381 0.00 0.00 0.00 3.50
2019 2186 2.310052 CTGGAGGGGATTGAAGAGGTTT 59.690 50.000 0.00 0.00 0.00 3.27
2020 2187 2.041620 TGGAGGGGATTGAAGAGGTTTG 59.958 50.000 0.00 0.00 0.00 2.93
2021 2188 2.308866 GGAGGGGATTGAAGAGGTTTGA 59.691 50.000 0.00 0.00 0.00 2.69
2022 2189 3.245264 GGAGGGGATTGAAGAGGTTTGAA 60.245 47.826 0.00 0.00 0.00 2.69
2023 2190 4.013050 GAGGGGATTGAAGAGGTTTGAAG 58.987 47.826 0.00 0.00 0.00 3.02
2024 2191 3.092301 GGGGATTGAAGAGGTTTGAAGG 58.908 50.000 0.00 0.00 0.00 3.46
2025 2192 3.092301 GGGATTGAAGAGGTTTGAAGGG 58.908 50.000 0.00 0.00 0.00 3.95
2026 2193 3.245264 GGGATTGAAGAGGTTTGAAGGGA 60.245 47.826 0.00 0.00 0.00 4.20
2027 2194 4.407365 GGATTGAAGAGGTTTGAAGGGAA 58.593 43.478 0.00 0.00 0.00 3.97
2028 2195 5.019470 GGATTGAAGAGGTTTGAAGGGAAT 58.981 41.667 0.00 0.00 0.00 3.01
2029 2196 5.481824 GGATTGAAGAGGTTTGAAGGGAATT 59.518 40.000 0.00 0.00 0.00 2.17
2030 2197 5.789643 TTGAAGAGGTTTGAAGGGAATTG 57.210 39.130 0.00 0.00 0.00 2.32
2031 2198 4.151883 TGAAGAGGTTTGAAGGGAATTGG 58.848 43.478 0.00 0.00 0.00 3.16
2032 2199 4.141041 TGAAGAGGTTTGAAGGGAATTGGA 60.141 41.667 0.00 0.00 0.00 3.53
2033 2200 4.682021 AGAGGTTTGAAGGGAATTGGAT 57.318 40.909 0.00 0.00 0.00 3.41
2034 2201 4.347607 AGAGGTTTGAAGGGAATTGGATG 58.652 43.478 0.00 0.00 0.00 3.51
2035 2202 3.444029 AGGTTTGAAGGGAATTGGATGG 58.556 45.455 0.00 0.00 0.00 3.51
2036 2203 2.501316 GGTTTGAAGGGAATTGGATGGG 59.499 50.000 0.00 0.00 0.00 4.00
2037 2204 3.440127 GTTTGAAGGGAATTGGATGGGA 58.560 45.455 0.00 0.00 0.00 4.37
2038 2205 4.033009 GTTTGAAGGGAATTGGATGGGAT 58.967 43.478 0.00 0.00 0.00 3.85
2039 2206 4.351110 TTGAAGGGAATTGGATGGGATT 57.649 40.909 0.00 0.00 0.00 3.01
2040 2207 4.351110 TGAAGGGAATTGGATGGGATTT 57.649 40.909 0.00 0.00 0.00 2.17
2041 2208 4.697798 TGAAGGGAATTGGATGGGATTTT 58.302 39.130 0.00 0.00 0.00 1.82
2042 2209 4.470664 TGAAGGGAATTGGATGGGATTTTG 59.529 41.667 0.00 0.00 0.00 2.44
2043 2210 4.351110 AGGGAATTGGATGGGATTTTGA 57.649 40.909 0.00 0.00 0.00 2.69
2044 2211 4.033009 AGGGAATTGGATGGGATTTTGAC 58.967 43.478 0.00 0.00 0.00 3.18
2045 2212 4.033009 GGGAATTGGATGGGATTTTGACT 58.967 43.478 0.00 0.00 0.00 3.41
2046 2213 4.471025 GGGAATTGGATGGGATTTTGACTT 59.529 41.667 0.00 0.00 0.00 3.01
2047 2214 5.422145 GGAATTGGATGGGATTTTGACTTG 58.578 41.667 0.00 0.00 0.00 3.16
2048 2215 5.046376 GGAATTGGATGGGATTTTGACTTGT 60.046 40.000 0.00 0.00 0.00 3.16
2049 2216 6.154363 GGAATTGGATGGGATTTTGACTTGTA 59.846 38.462 0.00 0.00 0.00 2.41
2050 2217 7.147672 GGAATTGGATGGGATTTTGACTTGTAT 60.148 37.037 0.00 0.00 0.00 2.29
2051 2218 6.528537 TTGGATGGGATTTTGACTTGTATG 57.471 37.500 0.00 0.00 0.00 2.39
2052 2219 4.955450 TGGATGGGATTTTGACTTGTATGG 59.045 41.667 0.00 0.00 0.00 2.74
2053 2220 4.342092 GGATGGGATTTTGACTTGTATGGG 59.658 45.833 0.00 0.00 0.00 4.00
2054 2221 4.666412 TGGGATTTTGACTTGTATGGGA 57.334 40.909 0.00 0.00 0.00 4.37
2055 2222 5.205517 TGGGATTTTGACTTGTATGGGAT 57.794 39.130 0.00 0.00 0.00 3.85
2056 2223 5.588845 TGGGATTTTGACTTGTATGGGATT 58.411 37.500 0.00 0.00 0.00 3.01
2057 2224 6.022315 TGGGATTTTGACTTGTATGGGATTT 58.978 36.000 0.00 0.00 0.00 2.17
2058 2225 7.185565 TGGGATTTTGACTTGTATGGGATTTA 58.814 34.615 0.00 0.00 0.00 1.40
2059 2226 7.341769 TGGGATTTTGACTTGTATGGGATTTAG 59.658 37.037 0.00 0.00 0.00 1.85
2060 2227 7.342026 GGGATTTTGACTTGTATGGGATTTAGT 59.658 37.037 0.00 0.00 0.00 2.24
2061 2228 8.406297 GGATTTTGACTTGTATGGGATTTAGTC 58.594 37.037 0.00 0.00 34.17 2.59
2072 2239 2.945456 GGATTTAGTCCACCCCAATCC 58.055 52.381 0.00 0.00 46.96 3.01
2073 2240 2.243736 GGATTTAGTCCACCCCAATCCA 59.756 50.000 4.66 0.00 46.96 3.41
2074 2241 2.891191 TTTAGTCCACCCCAATCCAC 57.109 50.000 0.00 0.00 0.00 4.02
2075 2242 2.053747 TTAGTCCACCCCAATCCACT 57.946 50.000 0.00 0.00 0.00 4.00
2076 2243 2.053747 TAGTCCACCCCAATCCACTT 57.946 50.000 0.00 0.00 0.00 3.16
2077 2244 0.698818 AGTCCACCCCAATCCACTTC 59.301 55.000 0.00 0.00 0.00 3.01
2078 2245 0.404040 GTCCACCCCAATCCACTTCA 59.596 55.000 0.00 0.00 0.00 3.02
2079 2246 1.153539 TCCACCCCAATCCACTTCAA 58.846 50.000 0.00 0.00 0.00 2.69
2080 2247 1.715931 TCCACCCCAATCCACTTCAAT 59.284 47.619 0.00 0.00 0.00 2.57
2081 2248 2.102578 CCACCCCAATCCACTTCAATC 58.897 52.381 0.00 0.00 0.00 2.67
2082 2249 2.102578 CACCCCAATCCACTTCAATCC 58.897 52.381 0.00 0.00 0.00 3.01
2083 2250 1.007118 ACCCCAATCCACTTCAATCCC 59.993 52.381 0.00 0.00 0.00 3.85
2084 2251 1.689258 CCCCAATCCACTTCAATCCCC 60.689 57.143 0.00 0.00 0.00 4.81
2085 2252 1.288932 CCCAATCCACTTCAATCCCCT 59.711 52.381 0.00 0.00 0.00 4.79
2086 2253 2.292455 CCCAATCCACTTCAATCCCCTT 60.292 50.000 0.00 0.00 0.00 3.95
2087 2254 3.026694 CCAATCCACTTCAATCCCCTTC 58.973 50.000 0.00 0.00 0.00 3.46
2088 2255 3.564133 CCAATCCACTTCAATCCCCTTCA 60.564 47.826 0.00 0.00 0.00 3.02
2089 2256 3.659183 ATCCACTTCAATCCCCTTCAG 57.341 47.619 0.00 0.00 0.00 3.02
2090 2257 2.348472 TCCACTTCAATCCCCTTCAGT 58.652 47.619 0.00 0.00 0.00 3.41
2091 2258 2.716424 TCCACTTCAATCCCCTTCAGTT 59.284 45.455 0.00 0.00 0.00 3.16
2092 2259 3.140144 TCCACTTCAATCCCCTTCAGTTT 59.860 43.478 0.00 0.00 0.00 2.66
2093 2260 3.897505 CCACTTCAATCCCCTTCAGTTTT 59.102 43.478 0.00 0.00 0.00 2.43
2094 2261 4.262164 CCACTTCAATCCCCTTCAGTTTTG 60.262 45.833 0.00 0.00 0.00 2.44
2095 2262 4.342092 CACTTCAATCCCCTTCAGTTTTGT 59.658 41.667 0.00 0.00 0.00 2.83
2096 2263 4.962362 ACTTCAATCCCCTTCAGTTTTGTT 59.038 37.500 0.00 0.00 0.00 2.83
2097 2264 4.935352 TCAATCCCCTTCAGTTTTGTTG 57.065 40.909 0.00 0.00 0.00 3.33
2098 2265 3.069443 TCAATCCCCTTCAGTTTTGTTGC 59.931 43.478 0.00 0.00 0.00 4.17
2099 2266 1.028905 TCCCCTTCAGTTTTGTTGCG 58.971 50.000 0.00 0.00 0.00 4.85
2100 2267 1.028905 CCCCTTCAGTTTTGTTGCGA 58.971 50.000 0.00 0.00 0.00 5.10
2101 2268 1.269051 CCCCTTCAGTTTTGTTGCGAC 60.269 52.381 0.00 0.00 0.00 5.19
2102 2269 1.269051 CCCTTCAGTTTTGTTGCGACC 60.269 52.381 0.45 0.00 0.00 4.79
2103 2270 1.596954 CCTTCAGTTTTGTTGCGACCG 60.597 52.381 0.45 0.00 0.00 4.79
2104 2271 1.329292 CTTCAGTTTTGTTGCGACCGA 59.671 47.619 0.45 0.00 0.00 4.69
2105 2272 1.370609 TCAGTTTTGTTGCGACCGAA 58.629 45.000 0.45 0.00 0.00 4.30
2106 2273 1.062880 TCAGTTTTGTTGCGACCGAAC 59.937 47.619 0.45 6.60 0.00 3.95
2107 2274 1.088306 AGTTTTGTTGCGACCGAACA 58.912 45.000 17.19 3.06 0.00 3.18
2108 2275 1.469308 AGTTTTGTTGCGACCGAACAA 59.531 42.857 17.19 8.35 40.65 2.83
2109 2276 1.843753 GTTTTGTTGCGACCGAACAAG 59.156 47.619 12.41 0.00 42.63 3.16
2110 2277 1.088306 TTTGTTGCGACCGAACAAGT 58.912 45.000 0.45 0.00 42.63 3.16
2111 2278 0.653636 TTGTTGCGACCGAACAAGTC 59.346 50.000 0.45 0.00 38.17 3.01
2112 2279 1.155424 TGTTGCGACCGAACAAGTCC 61.155 55.000 0.45 0.00 30.35 3.85
2113 2280 0.878961 GTTGCGACCGAACAAGTCCT 60.879 55.000 0.00 0.00 0.00 3.85
2114 2281 0.675083 TTGCGACCGAACAAGTCCTA 59.325 50.000 0.00 0.00 0.00 2.94
2115 2282 0.675083 TGCGACCGAACAAGTCCTAA 59.325 50.000 0.00 0.00 0.00 2.69
2116 2283 1.068895 TGCGACCGAACAAGTCCTAAA 59.931 47.619 0.00 0.00 0.00 1.85
2117 2284 1.458445 GCGACCGAACAAGTCCTAAAC 59.542 52.381 0.00 0.00 0.00 2.01
2118 2285 1.717645 CGACCGAACAAGTCCTAAACG 59.282 52.381 0.00 0.00 0.00 3.60
2119 2286 2.064014 GACCGAACAAGTCCTAAACGG 58.936 52.381 0.00 0.00 43.61 4.44
2120 2287 1.688197 ACCGAACAAGTCCTAAACGGA 59.312 47.619 0.00 0.00 41.09 4.69
2121 2288 2.288640 ACCGAACAAGTCCTAAACGGAG 60.289 50.000 0.00 0.00 44.20 4.63
2123 2290 2.729882 CGAACAAGTCCTAAACGGAGTG 59.270 50.000 0.00 0.00 45.00 3.51
2124 2291 2.165319 ACAAGTCCTAAACGGAGTGC 57.835 50.000 0.00 0.00 45.00 4.40
2125 2292 1.414919 ACAAGTCCTAAACGGAGTGCA 59.585 47.619 0.00 0.00 45.00 4.57
2126 2293 2.158871 ACAAGTCCTAAACGGAGTGCAA 60.159 45.455 0.00 0.00 45.00 4.08
2127 2294 2.457366 AGTCCTAAACGGAGTGCAAG 57.543 50.000 0.00 0.00 45.00 4.01
2128 2295 1.968493 AGTCCTAAACGGAGTGCAAGA 59.032 47.619 0.00 0.00 45.00 3.02
2129 2296 2.367567 AGTCCTAAACGGAGTGCAAGAA 59.632 45.455 0.00 0.00 45.00 2.52
2160 2327 4.099881 ACTCTACAAACGGTTGGTACTTGA 59.900 41.667 19.08 1.92 39.22 3.02
2165 2332 4.217983 ACAAACGGTTGGTACTTGACAAAA 59.782 37.500 19.08 0.00 39.22 2.44
2171 2338 4.399934 GGTTGGTACTTGACAAAACCTTGA 59.600 41.667 16.44 4.68 40.61 3.02
2172 2339 5.105675 GGTTGGTACTTGACAAAACCTTGAA 60.106 40.000 16.44 4.58 40.61 2.69
2173 2340 6.391537 GTTGGTACTTGACAAAACCTTGAAA 58.608 36.000 16.44 4.31 36.33 2.69
2174 2341 6.591750 TGGTACTTGACAAAACCTTGAAAA 57.408 33.333 16.44 0.00 36.33 2.29
2175 2342 6.391537 TGGTACTTGACAAAACCTTGAAAAC 58.608 36.000 16.44 0.00 36.33 2.43
2176 2343 6.015350 TGGTACTTGACAAAACCTTGAAAACA 60.015 34.615 16.44 0.00 36.33 2.83
2177 2344 6.309494 GGTACTTGACAAAACCTTGAAAACAC 59.691 38.462 10.72 0.00 36.33 3.32
2178 2345 4.920927 ACTTGACAAAACCTTGAAAACACG 59.079 37.500 0.00 0.00 36.33 4.49
2192 2524 1.408969 AACACGGGCAAAGAATTGGT 58.591 45.000 0.00 0.00 37.02 3.67
2196 2528 1.586154 CGGGCAAAGAATTGGTCGCT 61.586 55.000 0.00 0.00 37.02 4.93
2207 2539 0.886938 TTGGTCGCTCGGCAAAATCA 60.887 50.000 0.00 0.00 0.00 2.57
2221 2553 3.382546 GCAAAATCAGTGATATGTGCCCT 59.617 43.478 18.28 0.00 0.00 5.19
2223 2555 5.585390 CAAAATCAGTGATATGTGCCCTTC 58.415 41.667 5.94 0.00 0.00 3.46
2226 2558 2.435805 TCAGTGATATGTGCCCTTCCTC 59.564 50.000 0.00 0.00 0.00 3.71
2228 2560 1.412710 GTGATATGTGCCCTTCCTCGA 59.587 52.381 0.00 0.00 0.00 4.04
2232 2564 4.373116 GTGCCCTTCCTCGACGCA 62.373 66.667 0.00 0.00 0.00 5.24
2233 2565 3.621805 TGCCCTTCCTCGACGCAA 61.622 61.111 0.00 0.00 0.00 4.85
2234 2566 3.119096 GCCCTTCCTCGACGCAAC 61.119 66.667 0.00 0.00 0.00 4.17
2237 2569 1.738099 CCTTCCTCGACGCAACTGG 60.738 63.158 0.00 0.00 0.00 4.00
2248 2580 0.601046 CGCAACTGGCAGAAGAGTGA 60.601 55.000 23.66 0.00 45.17 3.41
2251 2583 2.564771 CAACTGGCAGAAGAGTGACAA 58.435 47.619 23.66 0.00 34.08 3.18
2257 2589 1.806623 GCAGAAGAGTGACAACGTGGT 60.807 52.381 0.00 0.00 0.00 4.16
2265 2597 3.541632 AGTGACAACGTGGTCTCATTTT 58.458 40.909 23.20 1.99 38.61 1.82
2266 2598 3.560068 AGTGACAACGTGGTCTCATTTTC 59.440 43.478 23.20 6.00 38.61 2.29
2271 2603 3.053831 ACGTGGTCTCATTTTCGGAAT 57.946 42.857 0.00 0.00 0.00 3.01
2272 2604 2.742053 ACGTGGTCTCATTTTCGGAATG 59.258 45.455 0.00 6.21 0.00 2.67
2273 2605 2.476185 CGTGGTCTCATTTTCGGAATGC 60.476 50.000 7.34 0.00 0.00 3.56
2287 2620 2.803155 GAATGCCTGTCAGACCGCCA 62.803 60.000 0.00 0.00 0.00 5.69
2296 2629 1.118965 TCAGACCGCCAAAGGTGAGA 61.119 55.000 0.00 0.00 46.09 3.27
2297 2630 0.036010 CAGACCGCCAAAGGTGAGAT 60.036 55.000 0.00 0.00 46.09 2.75
2305 2638 2.229784 GCCAAAGGTGAGATTGTTGGAG 59.770 50.000 4.95 0.00 41.05 3.86
2319 2652 0.994247 TTGGAGGATGGCATGTCAGT 59.006 50.000 3.81 0.00 0.00 3.41
2328 2661 1.168714 GGCATGTCAGTTCCTTGGAC 58.831 55.000 0.00 0.00 0.00 4.02
2344 2677 0.034337 GGACAGTTCCAGGCGTTGTA 59.966 55.000 0.00 0.00 42.30 2.41
2479 2819 9.990868 AAAGAAACATAACTATGGGGAATAAGT 57.009 29.630 1.98 0.00 38.00 2.24
2490 2845 9.343994 ACTATGGGGAATAAGTATCATCAGATT 57.656 33.333 0.00 0.00 35.67 2.40
2506 2861 2.821378 CAGATTGCCCACAAACATCTGA 59.179 45.455 1.90 0.00 40.51 3.27
2510 2865 2.874014 TGCCCACAAACATCTGAATCA 58.126 42.857 0.00 0.00 0.00 2.57
2528 2883 9.076781 TCTGAATCAGATGGTTTGAACAAATTA 57.923 29.630 9.18 0.00 35.39 1.40
2542 2897 7.479352 TGAACAAATTATGTCATCCAATGGT 57.521 32.000 0.00 0.00 42.99 3.55
2544 2899 7.178097 TGAACAAATTATGTCATCCAATGGTGA 59.822 33.333 0.00 0.00 42.99 4.02
2559 2914 8.131847 TCCAATGGTGATCATCAAAATTGTTA 57.868 30.769 13.76 1.46 33.25 2.41
2572 2927 9.559958 CATCAAAATTGTTACATTGGTCTAGAC 57.440 33.333 14.87 14.87 0.00 2.59
2586 2941 4.101235 GGTCTAGACGTACGAAATTCCAC 58.899 47.826 24.41 8.86 0.00 4.02
2587 2942 4.142513 GGTCTAGACGTACGAAATTCCACT 60.143 45.833 24.41 9.57 0.00 4.00
2591 2946 7.699812 GTCTAGACGTACGAAATTCCACTAAAT 59.300 37.037 24.41 0.00 0.00 1.40
2612 2967 0.183731 GAACCAAGCATAGGGGAGGG 59.816 60.000 0.00 0.00 0.00 4.30
2613 2968 1.289244 AACCAAGCATAGGGGAGGGG 61.289 60.000 0.00 0.00 0.00 4.79
2614 2969 1.385915 CCAAGCATAGGGGAGGGGA 60.386 63.158 0.00 0.00 0.00 4.81
2615 2970 1.709994 CCAAGCATAGGGGAGGGGAC 61.710 65.000 0.00 0.00 0.00 4.46
2618 2973 3.242291 CATAGGGGAGGGGACGGC 61.242 72.222 0.00 0.00 0.00 5.68
2619 2974 3.449126 ATAGGGGAGGGGACGGCT 61.449 66.667 0.00 0.00 0.00 5.52
2641 3009 3.680786 CGTCAGACTCCGGCACCA 61.681 66.667 0.00 0.00 0.00 4.17
2644 3012 1.609210 TCAGACTCCGGCACCATCA 60.609 57.895 0.00 0.00 0.00 3.07
2665 3033 0.411848 CCCACCAAAATACCCCACCT 59.588 55.000 0.00 0.00 0.00 4.00
2666 3034 1.555967 CCACCAAAATACCCCACCTG 58.444 55.000 0.00 0.00 0.00 4.00
2667 3035 1.555967 CACCAAAATACCCCACCTGG 58.444 55.000 0.00 0.00 0.00 4.45
2668 3036 1.076350 CACCAAAATACCCCACCTGGA 59.924 52.381 0.00 0.00 37.39 3.86
2669 3037 1.357761 ACCAAAATACCCCACCTGGAG 59.642 52.381 0.00 0.00 37.39 3.86
2670 3038 1.474330 CAAAATACCCCACCTGGAGC 58.526 55.000 0.00 0.00 37.39 4.70
2671 3039 0.335019 AAAATACCCCACCTGGAGCC 59.665 55.000 0.00 0.00 37.39 4.70
2672 3040 1.580994 AAATACCCCACCTGGAGCCC 61.581 60.000 0.00 0.00 37.39 5.19
2673 3041 4.752594 TACCCCACCTGGAGCCCC 62.753 72.222 0.00 0.00 37.39 5.80
2676 3044 3.268032 CCCACCTGGAGCCCCTTT 61.268 66.667 0.00 0.00 37.39 3.11
2677 3045 2.854076 CCACCTGGAGCCCCTTTT 59.146 61.111 0.00 0.00 37.39 2.27
2678 3046 1.304464 CCACCTGGAGCCCCTTTTC 60.304 63.158 0.00 0.00 37.39 2.29
2679 3047 1.304464 CACCTGGAGCCCCTTTTCC 60.304 63.158 0.00 0.00 0.00 3.13
2680 3048 2.044946 CCTGGAGCCCCTTTTCCG 60.045 66.667 0.00 0.00 36.22 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.342634 CAGAGAAAGAAACATAGAAAACCGAAA 58.657 33.333 0.00 0.00 0.00 3.46
430 482 2.396590 ACCGCTCGAAAACCATGTAT 57.603 45.000 0.00 0.00 0.00 2.29
495 547 9.525409 AAGCTATGCAATCTAATCAAAATGTTC 57.475 29.630 0.00 0.00 0.00 3.18
505 557 9.321562 CATTTGGAAAAAGCTATGCAATCTAAT 57.678 29.630 0.00 0.00 0.00 1.73
595 655 5.934625 AGTGTGAAAGAAATGTTCGCTCTAT 59.065 36.000 0.00 0.00 37.49 1.98
735 799 1.018910 TGTTGATGGCATGCTGATCG 58.981 50.000 18.92 0.00 0.00 3.69
736 800 3.819337 ACTATGTTGATGGCATGCTGATC 59.181 43.478 18.92 18.43 0.00 2.92
935 1054 6.292061 GCTTGATTGAAGATTAGTGCTCGTAG 60.292 42.308 0.00 0.00 32.82 3.51
936 1055 5.520288 GCTTGATTGAAGATTAGTGCTCGTA 59.480 40.000 0.00 0.00 32.82 3.43
937 1056 4.331168 GCTTGATTGAAGATTAGTGCTCGT 59.669 41.667 0.00 0.00 32.82 4.18
939 1058 4.637534 TGGCTTGATTGAAGATTAGTGCTC 59.362 41.667 0.00 0.00 32.82 4.26
941 1060 4.970662 TGGCTTGATTGAAGATTAGTGC 57.029 40.909 0.00 0.00 32.82 4.40
943 1062 8.897752 GTTTAGATGGCTTGATTGAAGATTAGT 58.102 33.333 0.00 0.00 32.82 2.24
944 1063 8.348507 GGTTTAGATGGCTTGATTGAAGATTAG 58.651 37.037 0.00 0.00 32.82 1.73
945 1064 7.833682 TGGTTTAGATGGCTTGATTGAAGATTA 59.166 33.333 0.00 0.00 32.82 1.75
946 1065 6.664816 TGGTTTAGATGGCTTGATTGAAGATT 59.335 34.615 0.00 0.00 32.82 2.40
947 1066 6.189859 TGGTTTAGATGGCTTGATTGAAGAT 58.810 36.000 0.00 0.00 32.82 2.40
948 1067 5.569355 TGGTTTAGATGGCTTGATTGAAGA 58.431 37.500 0.00 0.00 32.82 2.87
949 1068 5.902613 TGGTTTAGATGGCTTGATTGAAG 57.097 39.130 0.00 0.00 34.41 3.02
950 1069 6.009589 TCTTGGTTTAGATGGCTTGATTGAA 58.990 36.000 0.00 0.00 0.00 2.69
951 1070 5.569355 TCTTGGTTTAGATGGCTTGATTGA 58.431 37.500 0.00 0.00 0.00 2.57
952 1071 5.678107 GCTCTTGGTTTAGATGGCTTGATTG 60.678 44.000 0.00 0.00 0.00 2.67
953 1072 4.400567 GCTCTTGGTTTAGATGGCTTGATT 59.599 41.667 0.00 0.00 0.00 2.57
954 1073 3.950395 GCTCTTGGTTTAGATGGCTTGAT 59.050 43.478 0.00 0.00 0.00 2.57
959 1078 3.067320 GGATTGCTCTTGGTTTAGATGGC 59.933 47.826 0.00 0.00 0.00 4.40
965 1084 1.459450 GCCGGATTGCTCTTGGTTTA 58.541 50.000 5.05 0.00 0.00 2.01
1007 1162 3.986006 ACGACGTGGCGGTGATGT 61.986 61.111 0.00 0.00 35.12 3.06
1745 1912 7.333528 AGTTGTTGAGTTCTAAATTTCTGCA 57.666 32.000 0.00 0.00 0.00 4.41
1746 1913 8.017946 CCTAGTTGTTGAGTTCTAAATTTCTGC 58.982 37.037 0.00 0.00 0.00 4.26
1749 1916 9.052759 TGACCTAGTTGTTGAGTTCTAAATTTC 57.947 33.333 0.00 0.00 0.00 2.17
1764 1931 9.649167 GTTATGTACTTATGTTGACCTAGTTGT 57.351 33.333 0.00 0.00 0.00 3.32
1765 1932 9.871238 AGTTATGTACTTATGTTGACCTAGTTG 57.129 33.333 0.00 0.00 31.29 3.16
1834 2001 9.944376 TGCTTTTGTTATTCTCTAGAGTTATGT 57.056 29.630 19.21 5.26 0.00 2.29
1839 2006 9.944376 TGTAATGCTTTTGTTATTCTCTAGAGT 57.056 29.630 19.21 3.88 0.00 3.24
1867 2034 8.772705 GCATACTAGTGAGTCGTTAGTTATACT 58.227 37.037 5.39 0.00 37.10 2.12
1889 2056 4.503910 ACAAAAGTATGAGCACTCGCATA 58.496 39.130 0.00 0.00 42.27 3.14
1890 2057 3.338249 ACAAAAGTATGAGCACTCGCAT 58.662 40.909 0.00 0.00 42.27 4.73
1891 2058 2.736721 GACAAAAGTATGAGCACTCGCA 59.263 45.455 0.00 0.00 42.27 5.10
1892 2059 2.094417 GGACAAAAGTATGAGCACTCGC 59.906 50.000 0.00 0.00 38.99 5.03
1893 2060 3.325870 TGGACAAAAGTATGAGCACTCG 58.674 45.455 0.00 0.00 0.00 4.18
1894 2061 4.153117 CACTGGACAAAAGTATGAGCACTC 59.847 45.833 0.00 0.00 0.00 3.51
1895 2062 4.067896 CACTGGACAAAAGTATGAGCACT 58.932 43.478 0.00 0.00 0.00 4.40
1897 2064 4.085357 ACACTGGACAAAAGTATGAGCA 57.915 40.909 0.00 0.00 0.00 4.26
1900 2067 7.220740 TGACATAACACTGGACAAAAGTATGA 58.779 34.615 0.00 0.00 0.00 2.15
1901 2068 7.433708 TGACATAACACTGGACAAAAGTATG 57.566 36.000 0.00 0.00 0.00 2.39
1902 2069 8.458573 TTTGACATAACACTGGACAAAAGTAT 57.541 30.769 0.00 0.00 0.00 2.12
1903 2070 7.867305 TTTGACATAACACTGGACAAAAGTA 57.133 32.000 0.00 0.00 0.00 2.24
1904 2071 6.767524 TTTGACATAACACTGGACAAAAGT 57.232 33.333 0.00 0.00 0.00 2.66
1905 2072 7.032580 TGTTTTGACATAACACTGGACAAAAG 58.967 34.615 7.30 0.00 37.28 2.27
1907 2074 6.516739 TGTTTTGACATAACACTGGACAAA 57.483 33.333 7.30 0.00 30.96 2.83
1922 2089 4.857037 GGTGTCTTTGTCAAGTGTTTTGAC 59.143 41.667 11.93 11.93 46.57 3.18
1923 2090 4.378978 CGGTGTCTTTGTCAAGTGTTTTGA 60.379 41.667 0.00 0.00 0.00 2.69
1924 2091 3.851403 CGGTGTCTTTGTCAAGTGTTTTG 59.149 43.478 0.00 0.00 0.00 2.44
1925 2092 3.672241 GCGGTGTCTTTGTCAAGTGTTTT 60.672 43.478 0.00 0.00 0.00 2.43
1935 2102 3.552384 TCGGGGCGGTGTCTTTGT 61.552 61.111 0.00 0.00 0.00 2.83
1950 2117 3.006728 TAGGGCTTGTGGGGGTCG 61.007 66.667 0.00 0.00 0.00 4.79
1951 2118 2.675371 GTAGGGCTTGTGGGGGTC 59.325 66.667 0.00 0.00 0.00 4.46
1954 2121 2.850851 TAGGGGTAGGGCTTGTGGGG 62.851 65.000 0.00 0.00 0.00 4.96
1955 2122 0.917333 TTAGGGGTAGGGCTTGTGGG 60.917 60.000 0.00 0.00 0.00 4.61
1956 2123 0.546598 CTTAGGGGTAGGGCTTGTGG 59.453 60.000 0.00 0.00 0.00 4.17
1957 2124 0.546598 CCTTAGGGGTAGGGCTTGTG 59.453 60.000 0.00 0.00 0.00 3.33
1958 2125 1.279749 GCCTTAGGGGTAGGGCTTGT 61.280 60.000 0.00 0.00 41.20 3.16
1959 2126 1.532238 GCCTTAGGGGTAGGGCTTG 59.468 63.158 0.00 0.00 41.20 4.01
1960 2127 4.084822 GCCTTAGGGGTAGGGCTT 57.915 61.111 0.00 0.00 41.20 4.35
1963 2130 0.623617 ACAAGGCCTTAGGGGTAGGG 60.624 60.000 20.00 4.78 37.43 3.53
1964 2131 1.212195 GAACAAGGCCTTAGGGGTAGG 59.788 57.143 20.00 5.59 37.43 3.18
1965 2132 1.134491 CGAACAAGGCCTTAGGGGTAG 60.134 57.143 20.00 6.42 37.43 3.18
1966 2133 0.906775 CGAACAAGGCCTTAGGGGTA 59.093 55.000 20.00 0.00 37.43 3.69
1967 2134 1.683441 CGAACAAGGCCTTAGGGGT 59.317 57.895 20.00 9.25 37.43 4.95
1968 2135 1.077716 CCGAACAAGGCCTTAGGGG 60.078 63.158 20.00 13.31 38.36 4.79
1969 2136 0.037734 AACCGAACAAGGCCTTAGGG 59.962 55.000 20.00 18.24 33.69 3.53
1970 2137 2.773993 TAACCGAACAAGGCCTTAGG 57.226 50.000 20.00 20.25 33.69 2.69
1971 2138 3.189910 GGTTTAACCGAACAAGGCCTTAG 59.810 47.826 20.00 15.05 33.69 2.18
1972 2139 3.148412 GGTTTAACCGAACAAGGCCTTA 58.852 45.455 20.00 0.00 33.69 2.69
1973 2140 1.958579 GGTTTAACCGAACAAGGCCTT 59.041 47.619 13.78 13.78 33.69 4.35
1974 2141 1.144298 AGGTTTAACCGAACAAGGCCT 59.856 47.619 8.63 0.00 44.90 5.19
1975 2142 1.612676 AGGTTTAACCGAACAAGGCC 58.387 50.000 8.63 0.00 44.90 5.19
1976 2143 3.376234 GGATAGGTTTAACCGAACAAGGC 59.624 47.826 8.63 0.00 44.90 4.35
1977 2144 4.634443 CAGGATAGGTTTAACCGAACAAGG 59.366 45.833 8.63 0.00 44.90 3.61
1978 2145 4.634443 CCAGGATAGGTTTAACCGAACAAG 59.366 45.833 8.63 0.00 44.90 3.16
1979 2146 4.286549 TCCAGGATAGGTTTAACCGAACAA 59.713 41.667 8.63 0.00 44.90 2.83
1980 2147 3.839490 TCCAGGATAGGTTTAACCGAACA 59.161 43.478 8.63 0.00 44.90 3.18
1981 2148 4.439968 CTCCAGGATAGGTTTAACCGAAC 58.560 47.826 8.63 2.14 44.90 3.95
1982 2149 3.453353 CCTCCAGGATAGGTTTAACCGAA 59.547 47.826 8.63 1.53 39.72 4.30
1983 2150 3.036091 CCTCCAGGATAGGTTTAACCGA 58.964 50.000 8.63 3.65 39.72 4.69
1984 2151 2.104281 CCCTCCAGGATAGGTTTAACCG 59.896 54.545 8.63 0.00 40.29 4.44
1985 2152 2.442126 CCCCTCCAGGATAGGTTTAACC 59.558 54.545 5.91 5.91 38.24 2.85
1986 2153 3.390819 TCCCCTCCAGGATAGGTTTAAC 58.609 50.000 5.06 0.00 38.24 2.01
1987 2154 3.807288 TCCCCTCCAGGATAGGTTTAA 57.193 47.619 5.06 0.00 38.24 1.52
1988 2155 3.980698 CAATCCCCTCCAGGATAGGTTTA 59.019 47.826 5.06 0.00 46.31 2.01
1989 2156 2.785857 CAATCCCCTCCAGGATAGGTTT 59.214 50.000 5.06 1.27 46.31 3.27
1990 2157 2.021042 TCAATCCCCTCCAGGATAGGTT 60.021 50.000 5.06 0.00 46.31 3.50
1991 2158 1.585592 TCAATCCCCTCCAGGATAGGT 59.414 52.381 5.06 0.00 46.31 3.08
1992 2159 2.422939 TCAATCCCCTCCAGGATAGG 57.577 55.000 0.00 0.00 46.31 2.57
1993 2160 3.582208 CTCTTCAATCCCCTCCAGGATAG 59.418 52.174 0.00 0.00 46.31 2.08
1994 2161 3.591789 CTCTTCAATCCCCTCCAGGATA 58.408 50.000 0.00 0.00 46.31 2.59
1996 2163 1.626350 CCTCTTCAATCCCCTCCAGGA 60.626 57.143 0.00 0.00 41.18 3.86
1997 2164 0.842635 CCTCTTCAATCCCCTCCAGG 59.157 60.000 0.00 0.00 0.00 4.45
1998 2165 1.589414 ACCTCTTCAATCCCCTCCAG 58.411 55.000 0.00 0.00 0.00 3.86
1999 2166 2.041620 CAAACCTCTTCAATCCCCTCCA 59.958 50.000 0.00 0.00 0.00 3.86
2000 2167 2.308866 TCAAACCTCTTCAATCCCCTCC 59.691 50.000 0.00 0.00 0.00 4.30
2001 2168 3.721087 TCAAACCTCTTCAATCCCCTC 57.279 47.619 0.00 0.00 0.00 4.30
2002 2169 3.245407 CCTTCAAACCTCTTCAATCCCCT 60.245 47.826 0.00 0.00 0.00 4.79
2003 2170 3.092301 CCTTCAAACCTCTTCAATCCCC 58.908 50.000 0.00 0.00 0.00 4.81
2004 2171 3.092301 CCCTTCAAACCTCTTCAATCCC 58.908 50.000 0.00 0.00 0.00 3.85
2005 2172 4.034285 TCCCTTCAAACCTCTTCAATCC 57.966 45.455 0.00 0.00 0.00 3.01
2006 2173 6.393171 CAATTCCCTTCAAACCTCTTCAATC 58.607 40.000 0.00 0.00 0.00 2.67
2007 2174 5.246883 CCAATTCCCTTCAAACCTCTTCAAT 59.753 40.000 0.00 0.00 0.00 2.57
2008 2175 4.588528 CCAATTCCCTTCAAACCTCTTCAA 59.411 41.667 0.00 0.00 0.00 2.69
2009 2176 4.141041 TCCAATTCCCTTCAAACCTCTTCA 60.141 41.667 0.00 0.00 0.00 3.02
2010 2177 4.407365 TCCAATTCCCTTCAAACCTCTTC 58.593 43.478 0.00 0.00 0.00 2.87
2011 2178 4.469469 TCCAATTCCCTTCAAACCTCTT 57.531 40.909 0.00 0.00 0.00 2.85
2012 2179 4.347607 CATCCAATTCCCTTCAAACCTCT 58.652 43.478 0.00 0.00 0.00 3.69
2013 2180 3.448660 CCATCCAATTCCCTTCAAACCTC 59.551 47.826 0.00 0.00 0.00 3.85
2014 2181 3.444029 CCATCCAATTCCCTTCAAACCT 58.556 45.455 0.00 0.00 0.00 3.50
2015 2182 2.501316 CCCATCCAATTCCCTTCAAACC 59.499 50.000 0.00 0.00 0.00 3.27
2016 2183 3.440127 TCCCATCCAATTCCCTTCAAAC 58.560 45.455 0.00 0.00 0.00 2.93
2017 2184 3.843177 TCCCATCCAATTCCCTTCAAA 57.157 42.857 0.00 0.00 0.00 2.69
2018 2185 4.351110 AATCCCATCCAATTCCCTTCAA 57.649 40.909 0.00 0.00 0.00 2.69
2019 2186 4.351110 AAATCCCATCCAATTCCCTTCA 57.649 40.909 0.00 0.00 0.00 3.02
2020 2187 4.716287 TCAAAATCCCATCCAATTCCCTTC 59.284 41.667 0.00 0.00 0.00 3.46
2021 2188 4.471025 GTCAAAATCCCATCCAATTCCCTT 59.529 41.667 0.00 0.00 0.00 3.95
2022 2189 4.033009 GTCAAAATCCCATCCAATTCCCT 58.967 43.478 0.00 0.00 0.00 4.20
2023 2190 4.033009 AGTCAAAATCCCATCCAATTCCC 58.967 43.478 0.00 0.00 0.00 3.97
2024 2191 5.046376 ACAAGTCAAAATCCCATCCAATTCC 60.046 40.000 0.00 0.00 0.00 3.01
2025 2192 6.041423 ACAAGTCAAAATCCCATCCAATTC 57.959 37.500 0.00 0.00 0.00 2.17
2026 2193 7.364939 CCATACAAGTCAAAATCCCATCCAATT 60.365 37.037 0.00 0.00 0.00 2.32
2027 2194 6.098695 CCATACAAGTCAAAATCCCATCCAAT 59.901 38.462 0.00 0.00 0.00 3.16
2028 2195 5.421693 CCATACAAGTCAAAATCCCATCCAA 59.578 40.000 0.00 0.00 0.00 3.53
2029 2196 4.955450 CCATACAAGTCAAAATCCCATCCA 59.045 41.667 0.00 0.00 0.00 3.41
2030 2197 4.342092 CCCATACAAGTCAAAATCCCATCC 59.658 45.833 0.00 0.00 0.00 3.51
2031 2198 5.200483 TCCCATACAAGTCAAAATCCCATC 58.800 41.667 0.00 0.00 0.00 3.51
2032 2199 5.205517 TCCCATACAAGTCAAAATCCCAT 57.794 39.130 0.00 0.00 0.00 4.00
2033 2200 4.666412 TCCCATACAAGTCAAAATCCCA 57.334 40.909 0.00 0.00 0.00 4.37
2034 2201 6.544928 AAATCCCATACAAGTCAAAATCCC 57.455 37.500 0.00 0.00 0.00 3.85
2035 2202 8.293699 ACTAAATCCCATACAAGTCAAAATCC 57.706 34.615 0.00 0.00 0.00 3.01
2036 2203 8.406297 GGACTAAATCCCATACAAGTCAAAATC 58.594 37.037 0.00 0.00 42.46 2.17
2037 2204 8.293699 GGACTAAATCCCATACAAGTCAAAAT 57.706 34.615 0.00 0.00 42.46 1.82
2038 2205 7.696992 GGACTAAATCCCATACAAGTCAAAA 57.303 36.000 0.00 0.00 42.46 2.44
2053 2220 3.053619 AGTGGATTGGGGTGGACTAAATC 60.054 47.826 0.00 0.00 0.00 2.17
2054 2221 2.926329 AGTGGATTGGGGTGGACTAAAT 59.074 45.455 0.00 0.00 0.00 1.40
2055 2222 2.354328 AGTGGATTGGGGTGGACTAAA 58.646 47.619 0.00 0.00 0.00 1.85
2056 2223 2.053747 AGTGGATTGGGGTGGACTAA 57.946 50.000 0.00 0.00 0.00 2.24
2057 2224 1.913419 GAAGTGGATTGGGGTGGACTA 59.087 52.381 0.00 0.00 0.00 2.59
2058 2225 0.698818 GAAGTGGATTGGGGTGGACT 59.301 55.000 0.00 0.00 0.00 3.85
2059 2226 0.404040 TGAAGTGGATTGGGGTGGAC 59.596 55.000 0.00 0.00 0.00 4.02
2060 2227 1.153539 TTGAAGTGGATTGGGGTGGA 58.846 50.000 0.00 0.00 0.00 4.02
2061 2228 2.102578 GATTGAAGTGGATTGGGGTGG 58.897 52.381 0.00 0.00 0.00 4.61
2062 2229 2.102578 GGATTGAAGTGGATTGGGGTG 58.897 52.381 0.00 0.00 0.00 4.61
2063 2230 1.007118 GGGATTGAAGTGGATTGGGGT 59.993 52.381 0.00 0.00 0.00 4.95
2064 2231 1.689258 GGGGATTGAAGTGGATTGGGG 60.689 57.143 0.00 0.00 0.00 4.96
2065 2232 1.288932 AGGGGATTGAAGTGGATTGGG 59.711 52.381 0.00 0.00 0.00 4.12
2066 2233 2.834638 AGGGGATTGAAGTGGATTGG 57.165 50.000 0.00 0.00 0.00 3.16
2067 2234 3.698040 CTGAAGGGGATTGAAGTGGATTG 59.302 47.826 0.00 0.00 0.00 2.67
2068 2235 3.334881 ACTGAAGGGGATTGAAGTGGATT 59.665 43.478 0.00 0.00 0.00 3.01
2069 2236 2.922283 ACTGAAGGGGATTGAAGTGGAT 59.078 45.455 0.00 0.00 0.00 3.41
2070 2237 2.348472 ACTGAAGGGGATTGAAGTGGA 58.652 47.619 0.00 0.00 0.00 4.02
2071 2238 2.887151 ACTGAAGGGGATTGAAGTGG 57.113 50.000 0.00 0.00 0.00 4.00
2072 2239 4.342092 ACAAAACTGAAGGGGATTGAAGTG 59.658 41.667 0.00 0.00 0.00 3.16
2073 2240 4.546674 ACAAAACTGAAGGGGATTGAAGT 58.453 39.130 0.00 0.00 0.00 3.01
2074 2241 5.291971 CAACAAAACTGAAGGGGATTGAAG 58.708 41.667 0.00 0.00 0.00 3.02
2075 2242 4.442753 GCAACAAAACTGAAGGGGATTGAA 60.443 41.667 0.00 0.00 0.00 2.69
2076 2243 3.069443 GCAACAAAACTGAAGGGGATTGA 59.931 43.478 0.00 0.00 0.00 2.57
2077 2244 3.392882 GCAACAAAACTGAAGGGGATTG 58.607 45.455 0.00 0.00 0.00 2.67
2078 2245 2.035832 CGCAACAAAACTGAAGGGGATT 59.964 45.455 0.00 0.00 0.00 3.01
2079 2246 1.613437 CGCAACAAAACTGAAGGGGAT 59.387 47.619 0.00 0.00 0.00 3.85
2080 2247 1.028905 CGCAACAAAACTGAAGGGGA 58.971 50.000 0.00 0.00 0.00 4.81
2081 2248 1.028905 TCGCAACAAAACTGAAGGGG 58.971 50.000 0.00 0.00 0.00 4.79
2082 2249 1.269051 GGTCGCAACAAAACTGAAGGG 60.269 52.381 0.00 0.00 0.00 3.95
2083 2250 1.596954 CGGTCGCAACAAAACTGAAGG 60.597 52.381 0.00 0.00 0.00 3.46
2084 2251 1.329292 TCGGTCGCAACAAAACTGAAG 59.671 47.619 0.00 0.00 0.00 3.02
2085 2252 1.370609 TCGGTCGCAACAAAACTGAA 58.629 45.000 0.00 0.00 0.00 3.02
2086 2253 1.062880 GTTCGGTCGCAACAAAACTGA 59.937 47.619 0.00 0.00 0.00 3.41
2087 2254 1.202087 TGTTCGGTCGCAACAAAACTG 60.202 47.619 6.13 0.00 30.67 3.16
2088 2255 1.088306 TGTTCGGTCGCAACAAAACT 58.912 45.000 6.13 0.00 30.67 2.66
2089 2256 1.843753 CTTGTTCGGTCGCAACAAAAC 59.156 47.619 15.76 0.00 41.92 2.43
2090 2257 1.469308 ACTTGTTCGGTCGCAACAAAA 59.531 42.857 15.76 3.31 41.92 2.44
2091 2258 1.062880 GACTTGTTCGGTCGCAACAAA 59.937 47.619 15.76 6.54 41.92 2.83
2092 2259 0.653636 GACTTGTTCGGTCGCAACAA 59.346 50.000 14.87 14.87 40.62 2.83
2093 2260 1.155424 GGACTTGTTCGGTCGCAACA 61.155 55.000 4.99 4.99 34.82 3.33
2094 2261 0.878961 AGGACTTGTTCGGTCGCAAC 60.879 55.000 0.00 0.00 34.82 4.17
2095 2262 0.675083 TAGGACTTGTTCGGTCGCAA 59.325 50.000 0.00 0.00 34.82 4.85
2096 2263 0.675083 TTAGGACTTGTTCGGTCGCA 59.325 50.000 0.00 0.00 34.82 5.10
2097 2264 1.458445 GTTTAGGACTTGTTCGGTCGC 59.542 52.381 0.00 0.00 34.82 5.19
2098 2265 1.717645 CGTTTAGGACTTGTTCGGTCG 59.282 52.381 0.00 0.00 34.82 4.79
2099 2266 2.064014 CCGTTTAGGACTTGTTCGGTC 58.936 52.381 0.00 0.00 45.00 4.79
2100 2267 1.688197 TCCGTTTAGGACTTGTTCGGT 59.312 47.619 0.00 0.00 45.98 4.69
2101 2268 2.288640 ACTCCGTTTAGGACTTGTTCGG 60.289 50.000 0.00 0.00 45.98 4.30
2102 2269 2.729882 CACTCCGTTTAGGACTTGTTCG 59.270 50.000 0.00 0.00 45.98 3.95
2103 2270 2.479275 GCACTCCGTTTAGGACTTGTTC 59.521 50.000 0.00 0.00 45.98 3.18
2104 2271 2.158871 TGCACTCCGTTTAGGACTTGTT 60.159 45.455 0.00 0.00 45.98 2.83
2105 2272 1.414919 TGCACTCCGTTTAGGACTTGT 59.585 47.619 0.00 0.00 45.98 3.16
2106 2273 2.163818 TGCACTCCGTTTAGGACTTG 57.836 50.000 0.00 0.00 45.98 3.16
2107 2274 2.367567 TCTTGCACTCCGTTTAGGACTT 59.632 45.455 0.00 0.00 45.98 3.01
2108 2275 1.968493 TCTTGCACTCCGTTTAGGACT 59.032 47.619 0.00 0.00 45.98 3.85
2109 2276 2.450609 TCTTGCACTCCGTTTAGGAC 57.549 50.000 0.00 0.00 45.98 3.85
2111 2278 4.561735 TTTTTCTTGCACTCCGTTTAGG 57.438 40.909 0.00 0.00 42.97 2.69
2134 2301 3.271055 ACCAACCGTTTGTAGAGTGTT 57.729 42.857 0.00 0.00 0.00 3.32
2137 2304 4.099881 TCAAGTACCAACCGTTTGTAGAGT 59.900 41.667 0.00 0.00 0.00 3.24
2142 2309 2.988570 TGTCAAGTACCAACCGTTTGT 58.011 42.857 0.00 0.00 0.00 2.83
2146 2313 2.684374 GGTTTTGTCAAGTACCAACCGT 59.316 45.455 11.93 0.00 33.17 4.83
2150 2317 6.591750 TTTCAAGGTTTTGTCAAGTACCAA 57.408 33.333 16.76 4.76 35.73 3.67
2160 2327 2.675603 GCCCGTGTTTTCAAGGTTTTGT 60.676 45.455 0.00 0.00 45.65 2.83
2165 2332 1.136110 CTTTGCCCGTGTTTTCAAGGT 59.864 47.619 0.00 0.00 45.65 3.50
2171 2338 2.169561 ACCAATTCTTTGCCCGTGTTTT 59.830 40.909 0.00 0.00 0.00 2.43
2172 2339 1.760029 ACCAATTCTTTGCCCGTGTTT 59.240 42.857 0.00 0.00 0.00 2.83
2173 2340 1.339929 GACCAATTCTTTGCCCGTGTT 59.660 47.619 0.00 0.00 0.00 3.32
2174 2341 0.958822 GACCAATTCTTTGCCCGTGT 59.041 50.000 0.00 0.00 0.00 4.49
2175 2342 0.109781 CGACCAATTCTTTGCCCGTG 60.110 55.000 0.00 0.00 0.00 4.94
2176 2343 1.862602 GCGACCAATTCTTTGCCCGT 61.863 55.000 0.00 0.00 32.43 5.28
2177 2344 1.154035 GCGACCAATTCTTTGCCCG 60.154 57.895 0.00 0.00 32.75 6.13
2178 2345 0.171231 GAGCGACCAATTCTTTGCCC 59.829 55.000 0.00 0.00 0.00 5.36
2192 2524 0.320334 TCACTGATTTTGCCGAGCGA 60.320 50.000 0.00 0.00 0.00 4.93
2196 2528 3.065233 GCACATATCACTGATTTTGCCGA 59.935 43.478 0.00 0.00 0.00 5.54
2207 2539 1.414181 CGAGGAAGGGCACATATCACT 59.586 52.381 0.00 0.00 0.00 3.41
2221 2553 2.357034 GCCAGTTGCGTCGAGGAA 60.357 61.111 9.75 0.00 0.00 3.36
2223 2555 3.114616 CTGCCAGTTGCGTCGAGG 61.115 66.667 0.00 0.00 45.60 4.63
2226 2558 1.621301 CTCTTCTGCCAGTTGCGTCG 61.621 60.000 0.00 0.00 45.60 5.12
2228 2560 0.882042 CACTCTTCTGCCAGTTGCGT 60.882 55.000 0.00 0.00 45.60 5.24
2232 2564 2.565841 GTTGTCACTCTTCTGCCAGTT 58.434 47.619 0.00 0.00 0.00 3.16
2233 2565 1.539065 CGTTGTCACTCTTCTGCCAGT 60.539 52.381 0.00 0.00 0.00 4.00
2234 2566 1.143305 CGTTGTCACTCTTCTGCCAG 58.857 55.000 0.00 0.00 0.00 4.85
2237 2569 0.861837 CCACGTTGTCACTCTTCTGC 59.138 55.000 0.00 0.00 0.00 4.26
2248 2580 1.871039 CCGAAAATGAGACCACGTTGT 59.129 47.619 0.00 0.00 0.00 3.32
2251 2583 2.536761 TTCCGAAAATGAGACCACGT 57.463 45.000 0.00 0.00 0.00 4.49
2257 2589 3.009723 GACAGGCATTCCGAAAATGAGA 58.990 45.455 12.84 0.00 37.47 3.27
2265 2597 1.596934 GGTCTGACAGGCATTCCGA 59.403 57.895 9.71 0.00 37.47 4.55
2266 2598 1.811266 CGGTCTGACAGGCATTCCG 60.811 63.158 9.71 8.97 36.72 4.30
2271 2603 3.113514 TTTGGCGGTCTGACAGGCA 62.114 57.895 27.74 27.74 45.80 4.75
2272 2604 2.281484 TTTGGCGGTCTGACAGGC 60.281 61.111 23.63 23.63 36.52 4.85
2273 2605 1.672356 CCTTTGGCGGTCTGACAGG 60.672 63.158 10.38 2.75 36.52 4.00
2287 2620 4.338879 CATCCTCCAACAATCTCACCTTT 58.661 43.478 0.00 0.00 0.00 3.11
2296 2629 2.291735 TGACATGCCATCCTCCAACAAT 60.292 45.455 0.00 0.00 0.00 2.71
2297 2630 1.075212 TGACATGCCATCCTCCAACAA 59.925 47.619 0.00 0.00 0.00 2.83
2305 2638 1.747355 CAAGGAACTGACATGCCATCC 59.253 52.381 0.00 0.00 40.86 3.51
2328 2661 1.148310 CACTACAACGCCTGGAACTG 58.852 55.000 0.00 0.00 0.00 3.16
2340 2673 0.034756 ACATCAGCGGCACACTACAA 59.965 50.000 1.45 0.00 0.00 2.41
2344 2677 0.819259 ACAAACATCAGCGGCACACT 60.819 50.000 1.45 0.00 0.00 3.55
2467 2807 6.888632 GCAATCTGATGATACTTATTCCCCAT 59.111 38.462 0.00 0.00 31.70 4.00
2469 2809 5.649831 GGCAATCTGATGATACTTATTCCCC 59.350 44.000 0.00 0.00 31.70 4.81
2479 2819 4.598022 TGTTTGTGGGCAATCTGATGATA 58.402 39.130 0.00 0.00 34.18 2.15
2480 2820 3.433343 TGTTTGTGGGCAATCTGATGAT 58.567 40.909 0.00 0.00 34.18 2.45
2481 2821 2.874014 TGTTTGTGGGCAATCTGATGA 58.126 42.857 0.00 0.00 34.18 2.92
2482 2822 3.446161 AGATGTTTGTGGGCAATCTGATG 59.554 43.478 0.00 0.00 34.18 3.07
2484 2824 2.821378 CAGATGTTTGTGGGCAATCTGA 59.179 45.455 5.26 0.00 39.65 3.27
2485 2825 2.821378 TCAGATGTTTGTGGGCAATCTG 59.179 45.455 4.90 4.90 39.10 2.90
2486 2826 3.159213 TCAGATGTTTGTGGGCAATCT 57.841 42.857 0.00 0.00 34.18 2.40
2487 2827 3.940209 TTCAGATGTTTGTGGGCAATC 57.060 42.857 0.00 0.00 34.18 2.67
2490 2845 2.821378 CTGATTCAGATGTTTGTGGGCA 59.179 45.455 8.00 0.00 32.44 5.36
2506 2861 9.643693 GACATAATTTGTTCAAACCATCTGATT 57.356 29.630 0.00 0.00 39.18 2.57
2510 2865 8.253113 GGATGACATAATTTGTTCAAACCATCT 58.747 33.333 0.00 0.00 39.18 2.90
2518 2873 7.178097 TCACCATTGGATGACATAATTTGTTCA 59.822 33.333 10.37 0.00 39.18 3.18
2528 2883 5.056553 TGATGATCACCATTGGATGACAT 57.943 39.130 10.37 13.59 35.17 3.06
2542 2897 8.805175 AGACCAATGTAACAATTTTGATGATCA 58.195 29.630 0.00 0.00 0.00 2.92
2559 2914 4.771590 TTTCGTACGTCTAGACCAATGT 57.228 40.909 17.23 11.26 0.00 2.71
2586 2941 3.891366 CCCCTATGCTTGGTTCCATTTAG 59.109 47.826 0.00 0.00 0.00 1.85
2587 2942 3.529734 TCCCCTATGCTTGGTTCCATTTA 59.470 43.478 0.00 0.00 0.00 1.40
2591 2946 0.918983 CTCCCCTATGCTTGGTTCCA 59.081 55.000 0.00 0.00 0.00 3.53
2602 2957 2.095784 TAGCCGTCCCCTCCCCTAT 61.096 63.158 0.00 0.00 0.00 2.57
2614 2969 1.584380 GAGTCTGACGTGGTAGCCGT 61.584 60.000 0.00 7.94 42.06 5.68
2615 2970 1.136984 GAGTCTGACGTGGTAGCCG 59.863 63.158 0.00 1.98 0.00 5.52
2618 2973 1.801332 CCGGAGTCTGACGTGGTAG 59.199 63.158 0.00 0.00 0.00 3.18
2619 2974 2.338015 GCCGGAGTCTGACGTGGTA 61.338 63.158 5.05 0.00 0.00 3.25
2641 3009 1.342975 GGGGTATTTTGGTGGGCTGAT 60.343 52.381 0.00 0.00 0.00 2.90
2644 3012 0.252057 GTGGGGTATTTTGGTGGGCT 60.252 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.