Multiple sequence alignment - TraesCS7A01G423700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G423700 chr7A 100.000 2540 0 0 1 2540 616252844 616255383 0.000000e+00 4691.0
1 TraesCS7A01G423700 chr7A 92.582 1375 77 9 438 1812 714367549 714366200 0.000000e+00 1951.0
2 TraesCS7A01G423700 chr7A 93.521 926 47 2 887 1812 94867294 94866382 0.000000e+00 1365.0
3 TraesCS7A01G423700 chr7A 95.434 438 19 1 1 437 403873772 403873335 0.000000e+00 697.0
4 TraesCS7A01G423700 chr7A 94.235 451 23 1 438 885 705103785 705103335 0.000000e+00 686.0
5 TraesCS7A01G423700 chr7A 92.936 453 24 5 438 885 617840505 617840056 0.000000e+00 652.0
6 TraesCS7A01G423700 chr3A 96.530 2104 71 2 437 2540 144008994 144011095 0.000000e+00 3480.0
7 TraesCS7A01G423700 chr3A 92.458 1021 54 9 438 1456 691430414 691429415 0.000000e+00 1437.0
8 TraesCS7A01G423700 chr3A 95.622 434 18 1 4 437 382055550 382055118 0.000000e+00 695.0
9 TraesCS7A01G423700 chr3A 92.905 451 28 2 438 885 709545022 709544573 0.000000e+00 652.0
10 TraesCS7A01G423700 chr5A 96.006 2103 82 2 438 2540 618023599 618021499 0.000000e+00 3417.0
11 TraesCS7A01G423700 chr5A 94.983 877 40 2 438 1314 564382363 564381491 0.000000e+00 1373.0
12 TraesCS7A01G423700 chr5A 96.119 438 16 1 1 437 509795623 509795186 0.000000e+00 713.0
13 TraesCS7A01G423700 chr5A 95.881 437 18 0 1 437 451352564 451353000 0.000000e+00 708.0
14 TraesCS7A01G423700 chr5A 95.662 438 18 1 1 437 497293205 497292768 0.000000e+00 702.0
15 TraesCS7A01G423700 chr5A 95.402 435 19 1 4 437 357370149 357369715 0.000000e+00 691.0
16 TraesCS7A01G423700 chr5A 96.454 423 8 2 2125 2540 564381480 564381058 0.000000e+00 691.0
17 TraesCS7A01G423700 chr4A 96.209 1873 71 0 668 2540 629599375 629597503 0.000000e+00 3066.0
18 TraesCS7A01G423700 chr4A 95.051 1071 51 2 1186 2255 670393638 670392569 0.000000e+00 1683.0
19 TraesCS7A01G423700 chr4A 96.339 437 16 0 1 437 444084978 444084542 0.000000e+00 719.0
20 TraesCS7A01G423700 chr4A 95.470 287 12 1 2254 2540 423963179 423963464 8.280000e-125 457.0
21 TraesCS7A01G423700 chr4A 95.203 271 6 2 2254 2524 698681220 698681483 3.020000e-114 422.0
22 TraesCS7A01G423700 chrUn 95.880 1796 71 3 745 2540 271826946 271828738 0.000000e+00 2904.0
23 TraesCS7A01G423700 chrUn 96.441 1405 48 2 1136 2540 272970949 272969547 0.000000e+00 2316.0
24 TraesCS7A01G423700 chr7D 97.330 1161 30 1 1096 2255 45848963 45847803 0.000000e+00 1971.0
25 TraesCS7A01G423700 chr1A 92.190 1370 90 12 438 1800 154793848 154792489 0.000000e+00 1921.0
26 TraesCS7A01G423700 chr1A 95.632 435 18 1 4 437 364693168 364692734 0.000000e+00 697.0
27 TraesCS7A01G423700 chr1A 100.000 29 0 0 2329 2357 572833562 572833534 1.000000e-03 54.7
28 TraesCS7A01G423700 chr3B 96.078 1071 39 3 1186 2255 688182162 688181094 0.000000e+00 1742.0
29 TraesCS7A01G423700 chr3B 97.535 284 7 0 2257 2540 536043983 536044266 1.060000e-133 486.0
30 TraesCS7A01G423700 chr6B 94.865 1071 52 3 1186 2255 105311968 105313036 0.000000e+00 1670.0
31 TraesCS7A01G423700 chr2A 95.434 438 16 2 1 437 458853756 458853322 0.000000e+00 695.0
32 TraesCS7A01G423700 chr6A 92.444 450 30 4 438 885 65635857 65635410 7.660000e-180 640.0
33 TraesCS7A01G423700 chr7B 97.561 287 7 0 2254 2540 557210848 557211134 2.270000e-135 492.0
34 TraesCS7A01G423700 chr7B 97.312 186 5 0 2254 2439 724498811 724498626 1.470000e-82 316.0
35 TraesCS7A01G423700 chr5D 97.048 271 5 1 2254 2524 483271079 483270812 1.070000e-123 453.0
36 TraesCS7A01G423700 chr1B 92.188 256 20 0 885 1140 494558732 494558477 1.860000e-96 363.0
37 TraesCS7A01G423700 chr4B 91.016 256 23 0 885 1140 317665993 317666248 1.870000e-91 346.0
38 TraesCS7A01G423700 chr1D 85.366 164 22 2 2255 2417 10224876 10225038 4.350000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G423700 chr7A 616252844 616255383 2539 False 4691 4691 100.0000 1 2540 1 chr7A.!!$F1 2539
1 TraesCS7A01G423700 chr7A 714366200 714367549 1349 True 1951 1951 92.5820 438 1812 1 chr7A.!!$R5 1374
2 TraesCS7A01G423700 chr7A 94866382 94867294 912 True 1365 1365 93.5210 887 1812 1 chr7A.!!$R1 925
3 TraesCS7A01G423700 chr3A 144008994 144011095 2101 False 3480 3480 96.5300 437 2540 1 chr3A.!!$F1 2103
4 TraesCS7A01G423700 chr3A 691429415 691430414 999 True 1437 1437 92.4580 438 1456 1 chr3A.!!$R2 1018
5 TraesCS7A01G423700 chr5A 618021499 618023599 2100 True 3417 3417 96.0060 438 2540 1 chr5A.!!$R4 2102
6 TraesCS7A01G423700 chr5A 564381058 564382363 1305 True 1032 1373 95.7185 438 2540 2 chr5A.!!$R5 2102
7 TraesCS7A01G423700 chr4A 629597503 629599375 1872 True 3066 3066 96.2090 668 2540 1 chr4A.!!$R2 1872
8 TraesCS7A01G423700 chr4A 670392569 670393638 1069 True 1683 1683 95.0510 1186 2255 1 chr4A.!!$R3 1069
9 TraesCS7A01G423700 chrUn 271826946 271828738 1792 False 2904 2904 95.8800 745 2540 1 chrUn.!!$F1 1795
10 TraesCS7A01G423700 chrUn 272969547 272970949 1402 True 2316 2316 96.4410 1136 2540 1 chrUn.!!$R1 1404
11 TraesCS7A01G423700 chr7D 45847803 45848963 1160 True 1971 1971 97.3300 1096 2255 1 chr7D.!!$R1 1159
12 TraesCS7A01G423700 chr1A 154792489 154793848 1359 True 1921 1921 92.1900 438 1800 1 chr1A.!!$R1 1362
13 TraesCS7A01G423700 chr3B 688181094 688182162 1068 True 1742 1742 96.0780 1186 2255 1 chr3B.!!$R1 1069
14 TraesCS7A01G423700 chr6B 105311968 105313036 1068 False 1670 1670 94.8650 1186 2255 1 chr6B.!!$F1 1069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.037697 TGCTTGTCGTTATGGCGAGT 60.038 50.0 0.0 0.0 41.85 4.18 F
742 743 0.112995 ACCATGCCACACCATGTCTT 59.887 50.0 0.0 0.0 40.72 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1472 1.135373 CGAGGTTGAGCGACATACAGT 60.135 52.381 0.0 0.0 0.0 3.55 R
2123 2129 1.446907 AACGATGGCTGCTCTCAAAG 58.553 50.000 0.0 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.721087 CCTCTCTCTCTCTATCCTCCC 57.279 57.143 0.00 0.00 0.00 4.30
21 22 3.260205 CCTCTCTCTCTCTATCCTCCCT 58.740 54.545 0.00 0.00 0.00 4.20
22 23 3.657727 CCTCTCTCTCTCTATCCTCCCTT 59.342 52.174 0.00 0.00 0.00 3.95
23 24 4.106341 CCTCTCTCTCTCTATCCTCCCTTT 59.894 50.000 0.00 0.00 0.00 3.11
24 25 5.316987 CTCTCTCTCTCTATCCTCCCTTTC 58.683 50.000 0.00 0.00 0.00 2.62
25 26 4.981647 TCTCTCTCTCTATCCTCCCTTTCT 59.018 45.833 0.00 0.00 0.00 2.52
26 27 5.435041 TCTCTCTCTCTATCCTCCCTTTCTT 59.565 44.000 0.00 0.00 0.00 2.52
27 28 6.068498 TCTCTCTCTCTATCCTCCCTTTCTTT 60.068 42.308 0.00 0.00 0.00 2.52
28 29 6.507568 TCTCTCTCTATCCTCCCTTTCTTTT 58.492 40.000 0.00 0.00 0.00 2.27
29 30 6.609616 TCTCTCTCTATCCTCCCTTTCTTTTC 59.390 42.308 0.00 0.00 0.00 2.29
30 31 5.663556 TCTCTCTATCCTCCCTTTCTTTTCC 59.336 44.000 0.00 0.00 0.00 3.13
31 32 4.406003 TCTCTATCCTCCCTTTCTTTTCCG 59.594 45.833 0.00 0.00 0.00 4.30
32 33 4.101856 TCTATCCTCCCTTTCTTTTCCGT 58.898 43.478 0.00 0.00 0.00 4.69
33 34 3.808834 ATCCTCCCTTTCTTTTCCGTT 57.191 42.857 0.00 0.00 0.00 4.44
34 35 3.588210 TCCTCCCTTTCTTTTCCGTTT 57.412 42.857 0.00 0.00 0.00 3.60
35 36 3.219281 TCCTCCCTTTCTTTTCCGTTTG 58.781 45.455 0.00 0.00 0.00 2.93
36 37 2.288213 CCTCCCTTTCTTTTCCGTTTGC 60.288 50.000 0.00 0.00 0.00 3.68
37 38 1.684450 TCCCTTTCTTTTCCGTTTGCC 59.316 47.619 0.00 0.00 0.00 4.52
38 39 1.686587 CCCTTTCTTTTCCGTTTGCCT 59.313 47.619 0.00 0.00 0.00 4.75
39 40 2.288213 CCCTTTCTTTTCCGTTTGCCTC 60.288 50.000 0.00 0.00 0.00 4.70
40 41 2.623416 CCTTTCTTTTCCGTTTGCCTCT 59.377 45.455 0.00 0.00 0.00 3.69
41 42 3.068165 CCTTTCTTTTCCGTTTGCCTCTT 59.932 43.478 0.00 0.00 0.00 2.85
42 43 4.441495 CCTTTCTTTTCCGTTTGCCTCTTT 60.441 41.667 0.00 0.00 0.00 2.52
43 44 4.729227 TTCTTTTCCGTTTGCCTCTTTT 57.271 36.364 0.00 0.00 0.00 2.27
44 45 4.301637 TCTTTTCCGTTTGCCTCTTTTC 57.698 40.909 0.00 0.00 0.00 2.29
45 46 3.067601 TCTTTTCCGTTTGCCTCTTTTCC 59.932 43.478 0.00 0.00 0.00 3.13
46 47 2.060050 TTCCGTTTGCCTCTTTTCCA 57.940 45.000 0.00 0.00 0.00 3.53
47 48 2.286365 TCCGTTTGCCTCTTTTCCAT 57.714 45.000 0.00 0.00 0.00 3.41
48 49 2.593026 TCCGTTTGCCTCTTTTCCATT 58.407 42.857 0.00 0.00 0.00 3.16
49 50 2.962421 TCCGTTTGCCTCTTTTCCATTT 59.038 40.909 0.00 0.00 0.00 2.32
50 51 3.059166 CCGTTTGCCTCTTTTCCATTTG 58.941 45.455 0.00 0.00 0.00 2.32
51 52 2.476241 CGTTTGCCTCTTTTCCATTTGC 59.524 45.455 0.00 0.00 0.00 3.68
52 53 3.732212 GTTTGCCTCTTTTCCATTTGCT 58.268 40.909 0.00 0.00 0.00 3.91
53 54 4.129380 GTTTGCCTCTTTTCCATTTGCTT 58.871 39.130 0.00 0.00 0.00 3.91
54 55 3.389925 TGCCTCTTTTCCATTTGCTTG 57.610 42.857 0.00 0.00 0.00 4.01
55 56 2.699846 TGCCTCTTTTCCATTTGCTTGT 59.300 40.909 0.00 0.00 0.00 3.16
56 57 3.243839 TGCCTCTTTTCCATTTGCTTGTC 60.244 43.478 0.00 0.00 0.00 3.18
57 58 3.568538 CCTCTTTTCCATTTGCTTGTCG 58.431 45.455 0.00 0.00 0.00 4.35
58 59 3.004734 CCTCTTTTCCATTTGCTTGTCGT 59.995 43.478 0.00 0.00 0.00 4.34
59 60 4.499696 CCTCTTTTCCATTTGCTTGTCGTT 60.500 41.667 0.00 0.00 0.00 3.85
60 61 5.278266 CCTCTTTTCCATTTGCTTGTCGTTA 60.278 40.000 0.00 0.00 0.00 3.18
61 62 6.325919 TCTTTTCCATTTGCTTGTCGTTAT 57.674 33.333 0.00 0.00 0.00 1.89
62 63 6.148948 TCTTTTCCATTTGCTTGTCGTTATG 58.851 36.000 0.00 0.00 0.00 1.90
63 64 4.433186 TTCCATTTGCTTGTCGTTATGG 57.567 40.909 0.00 0.00 35.08 2.74
64 65 2.163412 TCCATTTGCTTGTCGTTATGGC 59.837 45.455 0.00 0.00 34.05 4.40
65 66 2.176369 CATTTGCTTGTCGTTATGGCG 58.824 47.619 0.00 0.00 0.00 5.69
66 67 1.514003 TTTGCTTGTCGTTATGGCGA 58.486 45.000 0.00 0.00 38.68 5.54
67 68 1.075542 TTGCTTGTCGTTATGGCGAG 58.924 50.000 0.00 0.00 41.85 5.03
68 69 0.037697 TGCTTGTCGTTATGGCGAGT 60.038 50.000 0.00 0.00 41.85 4.18
69 70 0.645868 GCTTGTCGTTATGGCGAGTC 59.354 55.000 0.00 0.00 41.85 3.36
70 71 1.278238 CTTGTCGTTATGGCGAGTCC 58.722 55.000 0.00 0.00 41.85 3.85
71 72 0.892755 TTGTCGTTATGGCGAGTCCT 59.107 50.000 0.00 0.00 41.85 3.85
72 73 0.454600 TGTCGTTATGGCGAGTCCTC 59.545 55.000 0.00 0.00 41.85 3.71
73 74 0.739561 GTCGTTATGGCGAGTCCTCT 59.260 55.000 0.00 0.00 41.85 3.69
74 75 1.945394 GTCGTTATGGCGAGTCCTCTA 59.055 52.381 0.00 0.00 41.85 2.43
75 76 2.553172 GTCGTTATGGCGAGTCCTCTAT 59.447 50.000 0.00 0.00 41.85 1.98
76 77 2.812591 TCGTTATGGCGAGTCCTCTATC 59.187 50.000 0.00 0.00 35.83 2.08
77 78 2.814919 CGTTATGGCGAGTCCTCTATCT 59.185 50.000 0.00 0.00 35.26 1.98
78 79 3.253677 CGTTATGGCGAGTCCTCTATCTT 59.746 47.826 0.00 0.00 35.26 2.40
79 80 4.614078 CGTTATGGCGAGTCCTCTATCTTC 60.614 50.000 0.00 0.00 35.26 2.87
80 81 2.738587 TGGCGAGTCCTCTATCTTCT 57.261 50.000 0.00 0.00 35.26 2.85
81 82 2.577700 TGGCGAGTCCTCTATCTTCTC 58.422 52.381 0.00 0.00 35.26 2.87
82 83 1.883926 GGCGAGTCCTCTATCTTCTCC 59.116 57.143 0.00 0.00 0.00 3.71
83 84 1.533731 GCGAGTCCTCTATCTTCTCCG 59.466 57.143 0.00 0.00 0.00 4.63
84 85 2.841215 CGAGTCCTCTATCTTCTCCGT 58.159 52.381 0.00 0.00 0.00 4.69
85 86 3.207778 CGAGTCCTCTATCTTCTCCGTT 58.792 50.000 0.00 0.00 0.00 4.44
86 87 3.002862 CGAGTCCTCTATCTTCTCCGTTG 59.997 52.174 0.00 0.00 0.00 4.10
87 88 3.949113 GAGTCCTCTATCTTCTCCGTTGT 59.051 47.826 0.00 0.00 0.00 3.32
88 89 3.949113 AGTCCTCTATCTTCTCCGTTGTC 59.051 47.826 0.00 0.00 0.00 3.18
89 90 3.949113 GTCCTCTATCTTCTCCGTTGTCT 59.051 47.826 0.00 0.00 0.00 3.41
90 91 4.035909 GTCCTCTATCTTCTCCGTTGTCTC 59.964 50.000 0.00 0.00 0.00 3.36
91 92 3.316868 CCTCTATCTTCTCCGTTGTCTCC 59.683 52.174 0.00 0.00 0.00 3.71
92 93 3.288964 TCTATCTTCTCCGTTGTCTCCC 58.711 50.000 0.00 0.00 0.00 4.30
93 94 0.818296 ATCTTCTCCGTTGTCTCCCG 59.182 55.000 0.00 0.00 0.00 5.14
94 95 0.251033 TCTTCTCCGTTGTCTCCCGA 60.251 55.000 0.00 0.00 0.00 5.14
95 96 0.171455 CTTCTCCGTTGTCTCCCGAG 59.829 60.000 0.00 0.00 0.00 4.63
96 97 0.251033 TTCTCCGTTGTCTCCCGAGA 60.251 55.000 0.00 0.00 34.56 4.04
97 98 0.251033 TCTCCGTTGTCTCCCGAGAA 60.251 55.000 0.00 0.00 39.48 2.87
98 99 0.818296 CTCCGTTGTCTCCCGAGAAT 59.182 55.000 0.00 0.00 39.48 2.40
99 100 0.530744 TCCGTTGTCTCCCGAGAATG 59.469 55.000 0.00 0.00 39.48 2.67
100 101 0.530744 CCGTTGTCTCCCGAGAATGA 59.469 55.000 0.00 0.00 39.48 2.57
101 102 1.067142 CCGTTGTCTCCCGAGAATGAA 60.067 52.381 0.00 0.00 39.48 2.57
102 103 2.263077 CGTTGTCTCCCGAGAATGAAG 58.737 52.381 0.00 0.00 39.48 3.02
103 104 2.352814 CGTTGTCTCCCGAGAATGAAGT 60.353 50.000 0.00 0.00 39.48 3.01
104 105 3.665190 GTTGTCTCCCGAGAATGAAGTT 58.335 45.455 0.00 0.00 39.48 2.66
105 106 3.594603 TGTCTCCCGAGAATGAAGTTC 57.405 47.619 0.00 0.00 39.48 3.01
123 124 9.710900 ATGAAGTTCTAAATTTTAAGCAAAGGG 57.289 29.630 4.17 0.00 0.00 3.95
124 125 8.919145 TGAAGTTCTAAATTTTAAGCAAAGGGA 58.081 29.630 4.17 0.00 0.00 4.20
125 126 9.929180 GAAGTTCTAAATTTTAAGCAAAGGGAT 57.071 29.630 0.00 0.00 0.00 3.85
126 127 9.710900 AAGTTCTAAATTTTAAGCAAAGGGATG 57.289 29.630 0.00 0.00 0.00 3.51
127 128 8.314021 AGTTCTAAATTTTAAGCAAAGGGATGG 58.686 33.333 0.00 0.00 0.00 3.51
128 129 8.311109 GTTCTAAATTTTAAGCAAAGGGATGGA 58.689 33.333 0.00 0.00 0.00 3.41
129 130 8.066612 TCTAAATTTTAAGCAAAGGGATGGAG 57.933 34.615 0.00 0.00 0.00 3.86
130 131 6.933514 AAATTTTAAGCAAAGGGATGGAGA 57.066 33.333 0.00 0.00 0.00 3.71
131 132 6.933514 AATTTTAAGCAAAGGGATGGAGAA 57.066 33.333 0.00 0.00 0.00 2.87
132 133 6.933514 ATTTTAAGCAAAGGGATGGAGAAA 57.066 33.333 0.00 0.00 0.00 2.52
133 134 6.739331 TTTTAAGCAAAGGGATGGAGAAAA 57.261 33.333 0.00 0.00 0.00 2.29
134 135 6.933514 TTTAAGCAAAGGGATGGAGAAAAT 57.066 33.333 0.00 0.00 0.00 1.82
135 136 6.530019 TTAAGCAAAGGGATGGAGAAAATC 57.470 37.500 0.00 0.00 0.00 2.17
136 137 4.328118 AGCAAAGGGATGGAGAAAATCT 57.672 40.909 0.00 0.00 0.00 2.40
137 138 5.456921 AGCAAAGGGATGGAGAAAATCTA 57.543 39.130 0.00 0.00 0.00 1.98
138 139 5.831103 AGCAAAGGGATGGAGAAAATCTAA 58.169 37.500 0.00 0.00 0.00 2.10
139 140 6.256053 AGCAAAGGGATGGAGAAAATCTAAA 58.744 36.000 0.00 0.00 0.00 1.85
140 141 6.725834 AGCAAAGGGATGGAGAAAATCTAAAA 59.274 34.615 0.00 0.00 0.00 1.52
141 142 7.038048 GCAAAGGGATGGAGAAAATCTAAAAG 58.962 38.462 0.00 0.00 0.00 2.27
142 143 7.310052 GCAAAGGGATGGAGAAAATCTAAAAGT 60.310 37.037 0.00 0.00 0.00 2.66
143 144 7.946381 AAGGGATGGAGAAAATCTAAAAGTC 57.054 36.000 0.00 0.00 0.00 3.01
144 145 6.116126 AGGGATGGAGAAAATCTAAAAGTCG 58.884 40.000 0.00 0.00 0.00 4.18
145 146 5.220873 GGGATGGAGAAAATCTAAAAGTCGC 60.221 44.000 0.00 0.00 0.00 5.19
146 147 5.586643 GGATGGAGAAAATCTAAAAGTCGCT 59.413 40.000 0.00 0.00 0.00 4.93
147 148 6.094186 GGATGGAGAAAATCTAAAAGTCGCTT 59.906 38.462 0.00 0.00 0.00 4.68
148 149 6.241207 TGGAGAAAATCTAAAAGTCGCTTG 57.759 37.500 0.00 0.00 0.00 4.01
149 150 5.181245 TGGAGAAAATCTAAAAGTCGCTTGG 59.819 40.000 0.00 0.00 0.00 3.61
150 151 5.181433 GGAGAAAATCTAAAAGTCGCTTGGT 59.819 40.000 0.00 0.00 0.00 3.67
151 152 6.370718 GGAGAAAATCTAAAAGTCGCTTGGTA 59.629 38.462 0.00 0.00 0.00 3.25
152 153 7.065923 GGAGAAAATCTAAAAGTCGCTTGGTAT 59.934 37.037 0.00 0.00 0.00 2.73
153 154 9.095065 GAGAAAATCTAAAAGTCGCTTGGTATA 57.905 33.333 0.00 0.00 0.00 1.47
154 155 9.099454 AGAAAATCTAAAAGTCGCTTGGTATAG 57.901 33.333 0.00 0.00 0.00 1.31
155 156 9.095065 GAAAATCTAAAAGTCGCTTGGTATAGA 57.905 33.333 0.00 0.00 0.00 1.98
156 157 9.444600 AAAATCTAAAAGTCGCTTGGTATAGAA 57.555 29.630 0.00 0.00 0.00 2.10
157 158 9.614792 AAATCTAAAAGTCGCTTGGTATAGAAT 57.385 29.630 0.00 0.00 0.00 2.40
158 159 9.614792 AATCTAAAAGTCGCTTGGTATAGAATT 57.385 29.630 0.00 0.00 0.00 2.17
159 160 9.614792 ATCTAAAAGTCGCTTGGTATAGAATTT 57.385 29.630 0.00 0.00 33.23 1.82
160 161 8.879759 TCTAAAAGTCGCTTGGTATAGAATTTG 58.120 33.333 0.00 0.00 32.40 2.32
161 162 5.485662 AAGTCGCTTGGTATAGAATTTGC 57.514 39.130 0.00 0.00 0.00 3.68
162 163 4.513442 AGTCGCTTGGTATAGAATTTGCA 58.487 39.130 0.00 0.00 0.00 4.08
163 164 4.941263 AGTCGCTTGGTATAGAATTTGCAA 59.059 37.500 0.00 0.00 0.00 4.08
164 165 5.590259 AGTCGCTTGGTATAGAATTTGCAAT 59.410 36.000 0.00 0.00 0.00 3.56
165 166 5.682862 GTCGCTTGGTATAGAATTTGCAATG 59.317 40.000 0.00 0.00 0.00 2.82
166 167 4.442073 CGCTTGGTATAGAATTTGCAATGC 59.558 41.667 0.00 0.00 0.00 3.56
167 168 5.594926 GCTTGGTATAGAATTTGCAATGCT 58.405 37.500 6.82 0.45 0.00 3.79
168 169 5.689068 GCTTGGTATAGAATTTGCAATGCTC 59.311 40.000 6.82 0.00 0.00 4.26
169 170 6.681120 GCTTGGTATAGAATTTGCAATGCTCA 60.681 38.462 6.82 0.00 0.00 4.26
170 171 6.772360 TGGTATAGAATTTGCAATGCTCAA 57.228 33.333 6.82 0.00 0.00 3.02
171 172 7.167924 TGGTATAGAATTTGCAATGCTCAAA 57.832 32.000 6.82 0.00 37.75 2.69
172 173 7.609960 TGGTATAGAATTTGCAATGCTCAAAA 58.390 30.769 6.82 0.00 37.04 2.44
173 174 8.259411 TGGTATAGAATTTGCAATGCTCAAAAT 58.741 29.630 6.82 1.32 37.04 1.82
174 175 9.748708 GGTATAGAATTTGCAATGCTCAAAATA 57.251 29.630 6.82 0.00 37.04 1.40
178 179 8.644318 AGAATTTGCAATGCTCAAAATAGATC 57.356 30.769 6.82 0.00 37.04 2.75
179 180 8.475639 AGAATTTGCAATGCTCAAAATAGATCT 58.524 29.630 6.82 0.00 37.04 2.75
180 181 9.740239 GAATTTGCAATGCTCAAAATAGATCTA 57.260 29.630 6.82 4.57 37.04 1.98
181 182 9.525409 AATTTGCAATGCTCAAAATAGATCTAC 57.475 29.630 4.10 0.00 37.04 2.59
182 183 6.624352 TGCAATGCTCAAAATAGATCTACC 57.376 37.500 4.10 0.00 0.00 3.18
183 184 6.121590 TGCAATGCTCAAAATAGATCTACCA 58.878 36.000 4.10 0.00 0.00 3.25
184 185 6.261603 TGCAATGCTCAAAATAGATCTACCAG 59.738 38.462 4.10 0.00 0.00 4.00
185 186 6.293845 GCAATGCTCAAAATAGATCTACCAGG 60.294 42.308 4.10 0.00 0.00 4.45
186 187 6.753913 ATGCTCAAAATAGATCTACCAGGA 57.246 37.500 4.10 0.60 0.00 3.86
187 188 6.560003 TGCTCAAAATAGATCTACCAGGAA 57.440 37.500 4.10 0.00 0.00 3.36
188 189 6.586344 TGCTCAAAATAGATCTACCAGGAAG 58.414 40.000 4.10 0.59 0.00 3.46
189 190 5.468409 GCTCAAAATAGATCTACCAGGAAGC 59.532 44.000 4.10 6.82 0.00 3.86
190 191 6.560003 TCAAAATAGATCTACCAGGAAGCA 57.440 37.500 4.10 0.00 0.00 3.91
191 192 6.957631 TCAAAATAGATCTACCAGGAAGCAA 58.042 36.000 4.10 0.00 0.00 3.91
192 193 7.577303 TCAAAATAGATCTACCAGGAAGCAAT 58.423 34.615 4.10 0.00 0.00 3.56
193 194 7.716998 TCAAAATAGATCTACCAGGAAGCAATC 59.283 37.037 4.10 0.00 0.00 2.67
204 205 2.902065 GAAGCAATCCACTTCCGTTC 57.098 50.000 0.00 0.00 38.05 3.95
205 206 2.427506 GAAGCAATCCACTTCCGTTCT 58.572 47.619 0.00 0.00 38.05 3.01
206 207 2.568623 AGCAATCCACTTCCGTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
207 208 2.427506 AGCAATCCACTTCCGTTCTTC 58.572 47.619 0.00 0.00 0.00 2.87
208 209 2.039084 AGCAATCCACTTCCGTTCTTCT 59.961 45.455 0.00 0.00 0.00 2.85
209 210 2.814336 GCAATCCACTTCCGTTCTTCTT 59.186 45.455 0.00 0.00 0.00 2.52
210 211 3.253432 GCAATCCACTTCCGTTCTTCTTT 59.747 43.478 0.00 0.00 0.00 2.52
211 212 4.787598 CAATCCACTTCCGTTCTTCTTTG 58.212 43.478 0.00 0.00 0.00 2.77
212 213 3.553828 TCCACTTCCGTTCTTCTTTGT 57.446 42.857 0.00 0.00 0.00 2.83
213 214 4.675976 TCCACTTCCGTTCTTCTTTGTA 57.324 40.909 0.00 0.00 0.00 2.41
214 215 5.026038 TCCACTTCCGTTCTTCTTTGTAA 57.974 39.130 0.00 0.00 0.00 2.41
215 216 5.617252 TCCACTTCCGTTCTTCTTTGTAAT 58.383 37.500 0.00 0.00 0.00 1.89
216 217 6.059484 TCCACTTCCGTTCTTCTTTGTAATT 58.941 36.000 0.00 0.00 0.00 1.40
217 218 6.544564 TCCACTTCCGTTCTTCTTTGTAATTT 59.455 34.615 0.00 0.00 0.00 1.82
218 219 7.067737 TCCACTTCCGTTCTTCTTTGTAATTTT 59.932 33.333 0.00 0.00 0.00 1.82
219 220 7.704899 CCACTTCCGTTCTTCTTTGTAATTTTT 59.295 33.333 0.00 0.00 0.00 1.94
220 221 9.724839 CACTTCCGTTCTTCTTTGTAATTTTTA 57.275 29.630 0.00 0.00 0.00 1.52
228 229 9.834628 TTCTTCTTTGTAATTTTTATGTAGGCG 57.165 29.630 0.00 0.00 0.00 5.52
229 230 9.005777 TCTTCTTTGTAATTTTTATGTAGGCGT 57.994 29.630 0.00 0.00 0.00 5.68
230 231 9.620660 CTTCTTTGTAATTTTTATGTAGGCGTT 57.379 29.630 0.00 0.00 0.00 4.84
231 232 8.958175 TCTTTGTAATTTTTATGTAGGCGTTG 57.042 30.769 0.00 0.00 0.00 4.10
232 233 7.539366 TCTTTGTAATTTTTATGTAGGCGTTGC 59.461 33.333 0.00 0.00 0.00 4.17
233 234 6.503589 TGTAATTTTTATGTAGGCGTTGCT 57.496 33.333 0.00 0.00 0.00 3.91
234 235 6.548171 TGTAATTTTTATGTAGGCGTTGCTC 58.452 36.000 0.00 0.00 0.00 4.26
235 236 4.632538 ATTTTTATGTAGGCGTTGCTCC 57.367 40.909 0.00 0.00 0.00 4.70
236 237 3.343941 TTTTATGTAGGCGTTGCTCCT 57.656 42.857 0.00 0.00 37.72 3.69
237 238 3.343941 TTTATGTAGGCGTTGCTCCTT 57.656 42.857 0.00 0.00 35.21 3.36
238 239 2.309528 TATGTAGGCGTTGCTCCTTG 57.690 50.000 0.00 0.00 35.21 3.61
239 240 0.392998 ATGTAGGCGTTGCTCCTTGG 60.393 55.000 0.00 0.00 35.21 3.61
240 241 1.003718 GTAGGCGTTGCTCCTTGGT 60.004 57.895 0.00 0.00 35.21 3.67
241 242 0.248289 GTAGGCGTTGCTCCTTGGTA 59.752 55.000 0.00 0.00 35.21 3.25
242 243 0.248289 TAGGCGTTGCTCCTTGGTAC 59.752 55.000 0.00 0.00 35.21 3.34
243 244 1.302192 GGCGTTGCTCCTTGGTACA 60.302 57.895 0.00 0.00 0.00 2.90
261 262 7.201702 TGGTACAAATATGTCCTTGATACCA 57.798 36.000 11.36 11.36 41.05 3.25
262 263 7.811282 TGGTACAAATATGTCCTTGATACCAT 58.189 34.615 11.36 0.00 41.05 3.55
263 264 8.278639 TGGTACAAATATGTCCTTGATACCATT 58.721 33.333 11.36 0.00 41.05 3.16
264 265 9.787435 GGTACAAATATGTCCTTGATACCATTA 57.213 33.333 0.00 0.00 41.05 1.90
266 267 8.691661 ACAAATATGTCCTTGATACCATTACC 57.308 34.615 0.00 0.00 33.41 2.85
267 268 7.444183 ACAAATATGTCCTTGATACCATTACCG 59.556 37.037 0.00 0.00 33.41 4.02
268 269 3.830744 TGTCCTTGATACCATTACCGG 57.169 47.619 0.00 0.00 0.00 5.28
269 270 3.376636 TGTCCTTGATACCATTACCGGA 58.623 45.455 9.46 0.00 0.00 5.14
270 271 3.386726 TGTCCTTGATACCATTACCGGAG 59.613 47.826 9.46 0.00 0.00 4.63
283 284 4.986467 CGGAGGGAATTTCCTGGG 57.014 61.111 11.06 0.00 37.25 4.45
284 285 1.999346 CGGAGGGAATTTCCTGGGT 59.001 57.895 11.06 0.00 37.25 4.51
285 286 1.209621 CGGAGGGAATTTCCTGGGTA 58.790 55.000 11.06 0.00 37.25 3.69
286 287 1.141053 CGGAGGGAATTTCCTGGGTAG 59.859 57.143 11.06 0.00 37.25 3.18
287 288 1.133761 GGAGGGAATTTCCTGGGTAGC 60.134 57.143 11.06 0.00 37.25 3.58
288 289 0.927029 AGGGAATTTCCTGGGTAGCC 59.073 55.000 14.95 3.29 36.57 3.93
289 290 0.629058 GGGAATTTCCTGGGTAGCCA 59.371 55.000 14.12 14.12 36.57 4.75
290 291 1.685180 GGGAATTTCCTGGGTAGCCAC 60.685 57.143 10.27 0.00 36.57 5.01
291 292 1.005450 GGAATTTCCTGGGTAGCCACA 59.995 52.381 10.27 0.00 32.53 4.17
292 293 2.092323 GAATTTCCTGGGTAGCCACAC 58.908 52.381 10.27 0.00 0.00 3.82
293 294 1.372501 ATTTCCTGGGTAGCCACACT 58.627 50.000 10.27 0.00 0.00 3.55
294 295 1.145571 TTTCCTGGGTAGCCACACTT 58.854 50.000 10.27 0.00 0.00 3.16
295 296 1.145571 TTCCTGGGTAGCCACACTTT 58.854 50.000 10.27 0.00 0.00 2.66
296 297 1.145571 TCCTGGGTAGCCACACTTTT 58.854 50.000 10.27 0.00 0.00 2.27
297 298 1.202879 TCCTGGGTAGCCACACTTTTG 60.203 52.381 10.27 0.00 0.00 2.44
298 299 1.202879 CCTGGGTAGCCACACTTTTGA 60.203 52.381 10.27 0.00 0.00 2.69
299 300 2.555227 CCTGGGTAGCCACACTTTTGAT 60.555 50.000 10.27 0.00 0.00 2.57
300 301 3.157087 CTGGGTAGCCACACTTTTGATT 58.843 45.455 10.27 0.00 0.00 2.57
301 302 3.153919 TGGGTAGCCACACTTTTGATTC 58.846 45.455 10.27 0.00 0.00 2.52
302 303 3.181434 TGGGTAGCCACACTTTTGATTCT 60.181 43.478 10.27 0.00 0.00 2.40
303 304 3.826729 GGGTAGCCACACTTTTGATTCTT 59.173 43.478 5.96 0.00 0.00 2.52
304 305 5.007682 GGGTAGCCACACTTTTGATTCTTA 58.992 41.667 5.96 0.00 0.00 2.10
305 306 5.652452 GGGTAGCCACACTTTTGATTCTTAT 59.348 40.000 5.96 0.00 0.00 1.73
306 307 6.826741 GGGTAGCCACACTTTTGATTCTTATA 59.173 38.462 5.96 0.00 0.00 0.98
307 308 7.338449 GGGTAGCCACACTTTTGATTCTTATAA 59.662 37.037 5.96 0.00 0.00 0.98
308 309 8.903820 GGTAGCCACACTTTTGATTCTTATAAT 58.096 33.333 0.00 0.00 0.00 1.28
309 310 9.722056 GTAGCCACACTTTTGATTCTTATAATG 57.278 33.333 0.00 0.00 0.00 1.90
310 311 7.260603 AGCCACACTTTTGATTCTTATAATGC 58.739 34.615 0.00 0.00 0.00 3.56
311 312 7.123247 AGCCACACTTTTGATTCTTATAATGCT 59.877 33.333 0.00 0.00 0.00 3.79
312 313 8.405531 GCCACACTTTTGATTCTTATAATGCTA 58.594 33.333 0.00 0.00 0.00 3.49
332 333 9.524496 AATGCTATGATAGATTTATTTGGCTCA 57.476 29.630 3.13 0.00 0.00 4.26
333 334 8.327941 TGCTATGATAGATTTATTTGGCTCAC 57.672 34.615 3.13 0.00 0.00 3.51
334 335 7.391554 TGCTATGATAGATTTATTTGGCTCACC 59.608 37.037 3.13 0.00 0.00 4.02
344 345 3.419793 TGGCTCACCACCTCTTTTG 57.580 52.632 0.00 0.00 42.67 2.44
345 346 0.178992 TGGCTCACCACCTCTTTTGG 60.179 55.000 0.00 0.00 42.67 3.28
347 348 1.692411 GCTCACCACCTCTTTTGGTT 58.308 50.000 0.00 0.00 45.62 3.67
348 349 2.488347 GGCTCACCACCTCTTTTGGTTA 60.488 50.000 0.00 0.00 45.62 2.85
349 350 3.219281 GCTCACCACCTCTTTTGGTTAA 58.781 45.455 0.00 0.00 45.62 2.01
350 351 3.826729 GCTCACCACCTCTTTTGGTTAAT 59.173 43.478 0.00 0.00 45.62 1.40
351 352 4.321230 GCTCACCACCTCTTTTGGTTAATG 60.321 45.833 0.00 0.00 45.62 1.90
352 353 4.148838 TCACCACCTCTTTTGGTTAATGG 58.851 43.478 0.00 0.00 45.62 3.16
353 354 4.141135 TCACCACCTCTTTTGGTTAATGGA 60.141 41.667 0.00 0.00 45.62 3.41
354 355 4.586841 CACCACCTCTTTTGGTTAATGGAA 59.413 41.667 0.00 0.00 45.62 3.53
355 356 4.587262 ACCACCTCTTTTGGTTAATGGAAC 59.413 41.667 0.00 0.00 45.62 3.62
356 357 4.832823 CCACCTCTTTTGGTTAATGGAACT 59.167 41.667 0.00 0.00 38.45 3.01
357 358 5.278957 CCACCTCTTTTGGTTAATGGAACTG 60.279 44.000 0.00 0.00 38.45 3.16
358 359 5.301805 CACCTCTTTTGGTTAATGGAACTGT 59.698 40.000 0.00 0.00 38.45 3.55
359 360 6.488683 CACCTCTTTTGGTTAATGGAACTGTA 59.511 38.462 0.00 0.00 38.45 2.74
360 361 7.176690 CACCTCTTTTGGTTAATGGAACTGTAT 59.823 37.037 0.00 0.00 38.45 2.29
361 362 7.728532 ACCTCTTTTGGTTAATGGAACTGTATT 59.271 33.333 0.00 0.00 36.89 1.89
362 363 9.238368 CCTCTTTTGGTTAATGGAACTGTATTA 57.762 33.333 0.00 0.00 38.21 0.98
369 370 8.798402 TGGTTAATGGAACTGTATTAACTTTGG 58.202 33.333 17.53 0.00 38.21 3.28
370 371 9.016438 GGTTAATGGAACTGTATTAACTTTGGA 57.984 33.333 17.53 0.00 38.21 3.53
372 373 6.759497 ATGGAACTGTATTAACTTTGGAGC 57.241 37.500 0.00 0.00 0.00 4.70
373 374 5.626142 TGGAACTGTATTAACTTTGGAGCA 58.374 37.500 0.00 0.00 0.00 4.26
374 375 6.245408 TGGAACTGTATTAACTTTGGAGCAT 58.755 36.000 0.00 0.00 0.00 3.79
375 376 6.150976 TGGAACTGTATTAACTTTGGAGCATG 59.849 38.462 0.00 0.00 0.00 4.06
376 377 6.151144 GGAACTGTATTAACTTTGGAGCATGT 59.849 38.462 0.00 0.00 0.00 3.21
377 378 7.335924 GGAACTGTATTAACTTTGGAGCATGTA 59.664 37.037 0.00 0.00 0.00 2.29
378 379 8.630054 AACTGTATTAACTTTGGAGCATGTAA 57.370 30.769 0.00 0.00 0.00 2.41
379 380 8.807948 ACTGTATTAACTTTGGAGCATGTAAT 57.192 30.769 0.00 0.00 0.00 1.89
393 394 4.614555 CATGTAATGCAAAGGCTCGTAA 57.385 40.909 0.00 0.00 37.62 3.18
394 395 5.173774 CATGTAATGCAAAGGCTCGTAAT 57.826 39.130 0.00 0.00 37.62 1.89
395 396 5.581605 CATGTAATGCAAAGGCTCGTAATT 58.418 37.500 0.00 0.00 37.62 1.40
396 397 6.724263 CATGTAATGCAAAGGCTCGTAATTA 58.276 36.000 0.00 0.00 37.62 1.40
397 398 6.935741 TGTAATGCAAAGGCTCGTAATTAT 57.064 33.333 0.00 0.00 41.91 1.28
398 399 7.328277 TGTAATGCAAAGGCTCGTAATTATT 57.672 32.000 0.00 0.00 41.91 1.40
399 400 7.192913 TGTAATGCAAAGGCTCGTAATTATTG 58.807 34.615 0.00 0.00 41.91 1.90
400 401 6.449635 AATGCAAAGGCTCGTAATTATTGA 57.550 33.333 0.00 0.00 41.91 2.57
401 402 5.888691 TGCAAAGGCTCGTAATTATTGAA 57.111 34.783 0.00 0.00 41.91 2.69
402 403 6.260870 TGCAAAGGCTCGTAATTATTGAAA 57.739 33.333 0.00 0.00 41.91 2.69
403 404 6.682746 TGCAAAGGCTCGTAATTATTGAAAA 58.317 32.000 0.00 0.00 41.91 2.29
404 405 7.319646 TGCAAAGGCTCGTAATTATTGAAAAT 58.680 30.769 0.00 0.00 41.91 1.82
405 406 8.462811 TGCAAAGGCTCGTAATTATTGAAAATA 58.537 29.630 0.00 0.00 41.91 1.40
406 407 9.296400 GCAAAGGCTCGTAATTATTGAAAATAA 57.704 29.630 0.00 0.00 36.96 1.40
409 410 8.747538 AGGCTCGTAATTATTGAAAATAAGGT 57.252 30.769 0.00 0.00 0.00 3.50
410 411 9.185680 AGGCTCGTAATTATTGAAAATAAGGTT 57.814 29.630 0.00 0.00 0.00 3.50
411 412 9.233232 GGCTCGTAATTATTGAAAATAAGGTTG 57.767 33.333 0.00 0.00 0.00 3.77
412 413 8.743099 GCTCGTAATTATTGAAAATAAGGTTGC 58.257 33.333 0.00 0.00 0.00 4.17
429 430 5.741388 GGTTGCTACCATAGAGTCAATTG 57.259 43.478 12.79 0.00 44.36 2.32
430 431 5.428253 GGTTGCTACCATAGAGTCAATTGA 58.572 41.667 12.79 3.38 44.36 2.57
431 432 5.880332 GGTTGCTACCATAGAGTCAATTGAA 59.120 40.000 10.35 0.00 44.36 2.69
432 433 6.374333 GGTTGCTACCATAGAGTCAATTGAAA 59.626 38.462 10.35 0.00 44.36 2.69
433 434 7.094377 GGTTGCTACCATAGAGTCAATTGAAAA 60.094 37.037 10.35 0.00 44.36 2.29
434 435 8.462016 GTTGCTACCATAGAGTCAATTGAAAAT 58.538 33.333 10.35 0.00 0.00 1.82
435 436 8.579850 TGCTACCATAGAGTCAATTGAAAATT 57.420 30.769 10.35 0.00 0.00 1.82
728 729 2.283821 CCCACCCCACCAACCATG 60.284 66.667 0.00 0.00 0.00 3.66
733 734 2.203611 CCCACCAACCATGCCACA 60.204 61.111 0.00 0.00 0.00 4.17
742 743 0.112995 ACCATGCCACACCATGTCTT 59.887 50.000 0.00 0.00 40.72 3.01
748 749 4.582701 TGCCACACCATGTCTTAAAAAG 57.417 40.909 0.00 0.00 0.00 2.27
767 768 0.389948 GAACACTCAACGCCCGATCT 60.390 55.000 0.00 0.00 0.00 2.75
796 797 3.691342 CCCGTCTTCGCTCCCACA 61.691 66.667 0.00 0.00 35.54 4.17
890 892 3.536917 CGCCTATGACTCGCCCCA 61.537 66.667 0.00 0.00 0.00 4.96
1084 1086 4.312941 TGCGCTGCTGCACCTACA 62.313 61.111 16.29 2.64 40.62 2.74
1133 1135 1.664873 CTCATCTACCTCGACCACGA 58.335 55.000 0.00 0.00 46.56 4.35
1178 1180 4.452733 CGACCTCAACCTCGGCCC 62.453 72.222 0.00 0.00 0.00 5.80
1203 1206 2.182030 GACTACGCGCTGCTCCTT 59.818 61.111 5.73 0.00 0.00 3.36
1619 1625 7.447374 TGTAGAAGAATTTGGGTTACATGTG 57.553 36.000 9.11 0.00 0.00 3.21
1643 1649 7.554835 GTGGTATGTCTGAATTTGGGTTACATA 59.445 37.037 0.00 0.00 0.00 2.29
1888 1894 0.250467 TGGTGAGTGCTTGCTTCCTC 60.250 55.000 0.00 0.00 0.00 3.71
1946 1952 3.164268 TCTGCATTTTGTTGGGTGCTAT 58.836 40.909 0.00 0.00 38.37 2.97
2123 2129 0.724549 TGCGTCGTTTGGATGTATGC 59.275 50.000 0.00 0.00 33.98 3.14
2172 2178 4.186926 GTTGTCCCGAAAGTTAGTATCCC 58.813 47.826 0.00 0.00 0.00 3.85
2492 2507 0.818852 TGTTTGCTGCTGCTGCTACA 60.819 50.000 27.67 25.69 40.48 2.74
2493 2508 0.311790 GTTTGCTGCTGCTGCTACAA 59.688 50.000 27.67 16.37 40.48 2.41
2518 2533 7.759607 ACATATGGAGAATAATTTAGGCACCT 58.240 34.615 7.80 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.260205 AGGGAGGATAGAGAGAGAGAGG 58.740 54.545 0.00 0.00 0.00 3.69
1 2 5.073691 AGAAAGGGAGGATAGAGAGAGAGAG 59.926 48.000 0.00 0.00 0.00 3.20
2 3 4.981647 AGAAAGGGAGGATAGAGAGAGAGA 59.018 45.833 0.00 0.00 0.00 3.10
3 4 5.324832 AGAAAGGGAGGATAGAGAGAGAG 57.675 47.826 0.00 0.00 0.00 3.20
4 5 5.742562 AAGAAAGGGAGGATAGAGAGAGA 57.257 43.478 0.00 0.00 0.00 3.10
5 6 6.183360 GGAAAAGAAAGGGAGGATAGAGAGAG 60.183 46.154 0.00 0.00 0.00 3.20
6 7 5.663556 GGAAAAGAAAGGGAGGATAGAGAGA 59.336 44.000 0.00 0.00 0.00 3.10
7 8 5.452636 CGGAAAAGAAAGGGAGGATAGAGAG 60.453 48.000 0.00 0.00 0.00 3.20
8 9 4.406003 CGGAAAAGAAAGGGAGGATAGAGA 59.594 45.833 0.00 0.00 0.00 3.10
9 10 4.162509 ACGGAAAAGAAAGGGAGGATAGAG 59.837 45.833 0.00 0.00 0.00 2.43
10 11 4.101856 ACGGAAAAGAAAGGGAGGATAGA 58.898 43.478 0.00 0.00 0.00 1.98
11 12 4.489306 ACGGAAAAGAAAGGGAGGATAG 57.511 45.455 0.00 0.00 0.00 2.08
12 13 4.921644 AACGGAAAAGAAAGGGAGGATA 57.078 40.909 0.00 0.00 0.00 2.59
13 14 3.808834 AACGGAAAAGAAAGGGAGGAT 57.191 42.857 0.00 0.00 0.00 3.24
14 15 3.219281 CAAACGGAAAAGAAAGGGAGGA 58.781 45.455 0.00 0.00 0.00 3.71
15 16 2.288213 GCAAACGGAAAAGAAAGGGAGG 60.288 50.000 0.00 0.00 0.00 4.30
16 17 2.288213 GGCAAACGGAAAAGAAAGGGAG 60.288 50.000 0.00 0.00 0.00 4.30
17 18 1.684450 GGCAAACGGAAAAGAAAGGGA 59.316 47.619 0.00 0.00 0.00 4.20
18 19 1.686587 AGGCAAACGGAAAAGAAAGGG 59.313 47.619 0.00 0.00 0.00 3.95
19 20 2.623416 AGAGGCAAACGGAAAAGAAAGG 59.377 45.455 0.00 0.00 0.00 3.11
20 21 3.990318 AGAGGCAAACGGAAAAGAAAG 57.010 42.857 0.00 0.00 0.00 2.62
21 22 4.729227 AAAGAGGCAAACGGAAAAGAAA 57.271 36.364 0.00 0.00 0.00 2.52
22 23 4.440940 GGAAAAGAGGCAAACGGAAAAGAA 60.441 41.667 0.00 0.00 0.00 2.52
23 24 3.067601 GGAAAAGAGGCAAACGGAAAAGA 59.932 43.478 0.00 0.00 0.00 2.52
24 25 3.181480 TGGAAAAGAGGCAAACGGAAAAG 60.181 43.478 0.00 0.00 0.00 2.27
25 26 2.761208 TGGAAAAGAGGCAAACGGAAAA 59.239 40.909 0.00 0.00 0.00 2.29
26 27 2.379972 TGGAAAAGAGGCAAACGGAAA 58.620 42.857 0.00 0.00 0.00 3.13
27 28 2.060050 TGGAAAAGAGGCAAACGGAA 57.940 45.000 0.00 0.00 0.00 4.30
28 29 2.286365 ATGGAAAAGAGGCAAACGGA 57.714 45.000 0.00 0.00 0.00 4.69
29 30 3.059166 CAAATGGAAAAGAGGCAAACGG 58.941 45.455 0.00 0.00 0.00 4.44
30 31 2.476241 GCAAATGGAAAAGAGGCAAACG 59.524 45.455 0.00 0.00 0.00 3.60
31 32 3.732212 AGCAAATGGAAAAGAGGCAAAC 58.268 40.909 0.00 0.00 0.00 2.93
32 33 4.128643 CAAGCAAATGGAAAAGAGGCAAA 58.871 39.130 0.00 0.00 0.00 3.68
33 34 3.134442 ACAAGCAAATGGAAAAGAGGCAA 59.866 39.130 0.00 0.00 0.00 4.52
34 35 2.699846 ACAAGCAAATGGAAAAGAGGCA 59.300 40.909 0.00 0.00 0.00 4.75
35 36 3.320626 GACAAGCAAATGGAAAAGAGGC 58.679 45.455 0.00 0.00 0.00 4.70
36 37 3.004734 ACGACAAGCAAATGGAAAAGAGG 59.995 43.478 0.00 0.00 0.00 3.69
37 38 4.228912 ACGACAAGCAAATGGAAAAGAG 57.771 40.909 0.00 0.00 0.00 2.85
38 39 4.647424 AACGACAAGCAAATGGAAAAGA 57.353 36.364 0.00 0.00 0.00 2.52
39 40 5.345741 CCATAACGACAAGCAAATGGAAAAG 59.654 40.000 0.00 0.00 36.76 2.27
40 41 5.226396 CCATAACGACAAGCAAATGGAAAA 58.774 37.500 0.00 0.00 36.76 2.29
41 42 4.804108 CCATAACGACAAGCAAATGGAAA 58.196 39.130 0.00 0.00 36.76 3.13
42 43 3.366883 GCCATAACGACAAGCAAATGGAA 60.367 43.478 3.40 0.00 36.76 3.53
43 44 2.163412 GCCATAACGACAAGCAAATGGA 59.837 45.455 3.40 0.00 36.76 3.41
44 45 2.529151 GCCATAACGACAAGCAAATGG 58.471 47.619 0.00 0.00 37.52 3.16
45 46 2.159585 TCGCCATAACGACAAGCAAATG 60.160 45.455 0.00 0.00 37.09 2.32
46 47 2.080693 TCGCCATAACGACAAGCAAAT 58.919 42.857 0.00 0.00 37.09 2.32
47 48 1.463056 CTCGCCATAACGACAAGCAAA 59.537 47.619 0.00 0.00 37.09 3.68
48 49 1.075542 CTCGCCATAACGACAAGCAA 58.924 50.000 0.00 0.00 37.09 3.91
49 50 0.037697 ACTCGCCATAACGACAAGCA 60.038 50.000 0.00 0.00 37.09 3.91
50 51 0.645868 GACTCGCCATAACGACAAGC 59.354 55.000 0.00 0.00 37.09 4.01
51 52 1.135083 AGGACTCGCCATAACGACAAG 60.135 52.381 0.00 0.00 40.02 3.16
52 53 0.892755 AGGACTCGCCATAACGACAA 59.107 50.000 0.00 0.00 40.02 3.18
53 54 0.454600 GAGGACTCGCCATAACGACA 59.545 55.000 0.00 0.00 40.02 4.35
54 55 0.739561 AGAGGACTCGCCATAACGAC 59.260 55.000 0.00 0.00 40.02 4.34
55 56 2.336945 TAGAGGACTCGCCATAACGA 57.663 50.000 0.00 0.00 40.02 3.85
56 57 2.814919 AGATAGAGGACTCGCCATAACG 59.185 50.000 0.00 0.00 40.02 3.18
57 58 4.521256 AGAAGATAGAGGACTCGCCATAAC 59.479 45.833 0.00 0.00 40.02 1.89
58 59 4.730966 AGAAGATAGAGGACTCGCCATAA 58.269 43.478 0.00 0.00 40.02 1.90
59 60 4.328536 GAGAAGATAGAGGACTCGCCATA 58.671 47.826 0.00 0.00 40.02 2.74
60 61 3.153919 GAGAAGATAGAGGACTCGCCAT 58.846 50.000 0.00 0.00 40.02 4.40
61 62 2.577700 GAGAAGATAGAGGACTCGCCA 58.422 52.381 0.00 0.00 40.02 5.69
62 63 1.883926 GGAGAAGATAGAGGACTCGCC 59.116 57.143 0.00 0.00 34.09 5.54
63 64 1.533731 CGGAGAAGATAGAGGACTCGC 59.466 57.143 0.00 0.00 34.09 5.03
64 65 2.841215 ACGGAGAAGATAGAGGACTCG 58.159 52.381 0.00 0.00 34.09 4.18
65 66 3.949113 ACAACGGAGAAGATAGAGGACTC 59.051 47.826 0.00 0.00 0.00 3.36
66 67 3.949113 GACAACGGAGAAGATAGAGGACT 59.051 47.826 0.00 0.00 0.00 3.85
67 68 3.949113 AGACAACGGAGAAGATAGAGGAC 59.051 47.826 0.00 0.00 0.00 3.85
68 69 4.200874 GAGACAACGGAGAAGATAGAGGA 58.799 47.826 0.00 0.00 0.00 3.71
69 70 3.316868 GGAGACAACGGAGAAGATAGAGG 59.683 52.174 0.00 0.00 0.00 3.69
70 71 3.316868 GGGAGACAACGGAGAAGATAGAG 59.683 52.174 0.00 0.00 0.00 2.43
71 72 3.288964 GGGAGACAACGGAGAAGATAGA 58.711 50.000 0.00 0.00 0.00 1.98
72 73 2.033550 CGGGAGACAACGGAGAAGATAG 59.966 54.545 0.00 0.00 0.00 2.08
73 74 2.022195 CGGGAGACAACGGAGAAGATA 58.978 52.381 0.00 0.00 0.00 1.98
74 75 0.818296 CGGGAGACAACGGAGAAGAT 59.182 55.000 0.00 0.00 0.00 2.40
75 76 0.251033 TCGGGAGACAACGGAGAAGA 60.251 55.000 0.00 0.00 0.00 2.87
76 77 0.171455 CTCGGGAGACAACGGAGAAG 59.829 60.000 0.00 0.00 37.45 2.85
77 78 0.251033 TCTCGGGAGACAACGGAGAA 60.251 55.000 0.00 0.00 40.09 2.87
78 79 0.251033 TTCTCGGGAGACAACGGAGA 60.251 55.000 0.00 0.00 40.91 3.71
79 80 0.818296 ATTCTCGGGAGACAACGGAG 59.182 55.000 0.00 0.00 37.14 4.63
80 81 0.530744 CATTCTCGGGAGACAACGGA 59.469 55.000 0.00 0.00 37.14 4.69
81 82 0.530744 TCATTCTCGGGAGACAACGG 59.469 55.000 0.00 0.00 37.14 4.44
82 83 2.263077 CTTCATTCTCGGGAGACAACG 58.737 52.381 0.00 0.00 37.14 4.10
83 84 3.320673 ACTTCATTCTCGGGAGACAAC 57.679 47.619 0.00 0.00 37.14 3.32
84 85 3.578716 AGAACTTCATTCTCGGGAGACAA 59.421 43.478 0.00 0.00 44.99 3.18
85 86 3.165875 AGAACTTCATTCTCGGGAGACA 58.834 45.455 0.00 0.00 44.99 3.41
86 87 3.878160 AGAACTTCATTCTCGGGAGAC 57.122 47.619 0.00 0.00 44.99 3.36
87 88 5.995565 TTTAGAACTTCATTCTCGGGAGA 57.004 39.130 0.00 0.00 44.99 3.71
88 89 7.617041 AAATTTAGAACTTCATTCTCGGGAG 57.383 36.000 0.00 0.00 44.99 4.30
89 90 7.996098 AAAATTTAGAACTTCATTCTCGGGA 57.004 32.000 0.00 0.00 44.99 5.14
90 91 9.774742 CTTAAAATTTAGAACTTCATTCTCGGG 57.225 33.333 0.00 0.00 44.99 5.14
91 92 9.278734 GCTTAAAATTTAGAACTTCATTCTCGG 57.721 33.333 0.00 0.00 44.99 4.63
92 93 9.825972 TGCTTAAAATTTAGAACTTCATTCTCG 57.174 29.630 0.00 0.00 44.99 4.04
97 98 9.710900 CCCTTTGCTTAAAATTTAGAACTTCAT 57.289 29.630 0.00 0.00 0.00 2.57
98 99 8.919145 TCCCTTTGCTTAAAATTTAGAACTTCA 58.081 29.630 0.00 0.00 0.00 3.02
99 100 9.929180 ATCCCTTTGCTTAAAATTTAGAACTTC 57.071 29.630 0.00 0.00 0.00 3.01
100 101 9.710900 CATCCCTTTGCTTAAAATTTAGAACTT 57.289 29.630 0.00 0.00 0.00 2.66
101 102 8.314021 CCATCCCTTTGCTTAAAATTTAGAACT 58.686 33.333 0.00 0.00 0.00 3.01
102 103 8.311109 TCCATCCCTTTGCTTAAAATTTAGAAC 58.689 33.333 0.00 0.00 0.00 3.01
103 104 8.429237 TCCATCCCTTTGCTTAAAATTTAGAA 57.571 30.769 0.00 0.00 0.00 2.10
104 105 7.893302 TCTCCATCCCTTTGCTTAAAATTTAGA 59.107 33.333 0.00 0.00 0.00 2.10
105 106 8.066612 TCTCCATCCCTTTGCTTAAAATTTAG 57.933 34.615 0.00 0.00 0.00 1.85
106 107 8.429237 TTCTCCATCCCTTTGCTTAAAATTTA 57.571 30.769 0.00 0.00 0.00 1.40
107 108 6.933514 TCTCCATCCCTTTGCTTAAAATTT 57.066 33.333 0.00 0.00 0.00 1.82
108 109 6.933514 TTCTCCATCCCTTTGCTTAAAATT 57.066 33.333 0.00 0.00 0.00 1.82
109 110 6.933514 TTTCTCCATCCCTTTGCTTAAAAT 57.066 33.333 0.00 0.00 0.00 1.82
110 111 6.739331 TTTTCTCCATCCCTTTGCTTAAAA 57.261 33.333 0.00 0.00 0.00 1.52
111 112 6.725834 AGATTTTCTCCATCCCTTTGCTTAAA 59.274 34.615 0.00 0.00 0.00 1.52
112 113 6.256053 AGATTTTCTCCATCCCTTTGCTTAA 58.744 36.000 0.00 0.00 0.00 1.85
113 114 5.831103 AGATTTTCTCCATCCCTTTGCTTA 58.169 37.500 0.00 0.00 0.00 3.09
114 115 4.681484 AGATTTTCTCCATCCCTTTGCTT 58.319 39.130 0.00 0.00 0.00 3.91
115 116 4.328118 AGATTTTCTCCATCCCTTTGCT 57.672 40.909 0.00 0.00 0.00 3.91
116 117 6.530019 TTTAGATTTTCTCCATCCCTTTGC 57.470 37.500 0.00 0.00 0.00 3.68
117 118 8.127150 ACTTTTAGATTTTCTCCATCCCTTTG 57.873 34.615 0.00 0.00 0.00 2.77
118 119 7.121315 CGACTTTTAGATTTTCTCCATCCCTTT 59.879 37.037 0.00 0.00 0.00 3.11
119 120 6.599638 CGACTTTTAGATTTTCTCCATCCCTT 59.400 38.462 0.00 0.00 0.00 3.95
120 121 6.116126 CGACTTTTAGATTTTCTCCATCCCT 58.884 40.000 0.00 0.00 0.00 4.20
121 122 5.220873 GCGACTTTTAGATTTTCTCCATCCC 60.221 44.000 0.00 0.00 0.00 3.85
122 123 5.586643 AGCGACTTTTAGATTTTCTCCATCC 59.413 40.000 0.00 0.00 0.00 3.51
123 124 6.670077 AGCGACTTTTAGATTTTCTCCATC 57.330 37.500 0.00 0.00 0.00 3.51
124 125 6.127897 CCAAGCGACTTTTAGATTTTCTCCAT 60.128 38.462 0.00 0.00 0.00 3.41
125 126 5.181245 CCAAGCGACTTTTAGATTTTCTCCA 59.819 40.000 0.00 0.00 0.00 3.86
126 127 5.181433 ACCAAGCGACTTTTAGATTTTCTCC 59.819 40.000 0.00 0.00 0.00 3.71
127 128 6.242508 ACCAAGCGACTTTTAGATTTTCTC 57.757 37.500 0.00 0.00 0.00 2.87
128 129 7.923414 ATACCAAGCGACTTTTAGATTTTCT 57.077 32.000 0.00 0.00 0.00 2.52
129 130 9.095065 TCTATACCAAGCGACTTTTAGATTTTC 57.905 33.333 0.00 0.00 0.00 2.29
130 131 9.444600 TTCTATACCAAGCGACTTTTAGATTTT 57.555 29.630 0.00 0.00 0.00 1.82
131 132 9.614792 ATTCTATACCAAGCGACTTTTAGATTT 57.385 29.630 0.00 0.00 0.00 2.17
132 133 9.614792 AATTCTATACCAAGCGACTTTTAGATT 57.385 29.630 0.00 0.00 0.00 2.40
133 134 9.614792 AAATTCTATACCAAGCGACTTTTAGAT 57.385 29.630 0.00 0.00 0.00 1.98
134 135 8.879759 CAAATTCTATACCAAGCGACTTTTAGA 58.120 33.333 0.00 0.00 0.00 2.10
135 136 7.640240 GCAAATTCTATACCAAGCGACTTTTAG 59.360 37.037 0.00 0.00 0.00 1.85
136 137 7.119992 TGCAAATTCTATACCAAGCGACTTTTA 59.880 33.333 0.00 0.00 0.00 1.52
137 138 6.072175 TGCAAATTCTATACCAAGCGACTTTT 60.072 34.615 0.00 0.00 0.00 2.27
138 139 5.414454 TGCAAATTCTATACCAAGCGACTTT 59.586 36.000 0.00 0.00 0.00 2.66
139 140 4.941263 TGCAAATTCTATACCAAGCGACTT 59.059 37.500 0.00 0.00 0.00 3.01
140 141 4.513442 TGCAAATTCTATACCAAGCGACT 58.487 39.130 0.00 0.00 0.00 4.18
141 142 4.875544 TGCAAATTCTATACCAAGCGAC 57.124 40.909 0.00 0.00 0.00 5.19
142 143 5.733091 GCATTGCAAATTCTATACCAAGCGA 60.733 40.000 1.71 0.00 0.00 4.93
143 144 4.442073 GCATTGCAAATTCTATACCAAGCG 59.558 41.667 1.71 0.00 0.00 4.68
144 145 5.594926 AGCATTGCAAATTCTATACCAAGC 58.405 37.500 11.91 0.00 0.00 4.01
145 146 6.798482 TGAGCATTGCAAATTCTATACCAAG 58.202 36.000 11.91 0.00 0.00 3.61
146 147 6.772360 TGAGCATTGCAAATTCTATACCAA 57.228 33.333 11.91 0.00 0.00 3.67
147 148 6.772360 TTGAGCATTGCAAATTCTATACCA 57.228 33.333 11.91 0.00 0.00 3.25
148 149 8.652810 ATTTTGAGCATTGCAAATTCTATACC 57.347 30.769 11.91 0.00 35.41 2.73
152 153 9.740239 GATCTATTTTGAGCATTGCAAATTCTA 57.260 29.630 11.91 0.00 35.41 2.10
153 154 8.475639 AGATCTATTTTGAGCATTGCAAATTCT 58.524 29.630 11.91 0.07 35.41 2.40
154 155 8.644318 AGATCTATTTTGAGCATTGCAAATTC 57.356 30.769 11.91 2.10 35.41 2.17
155 156 9.525409 GTAGATCTATTTTGAGCATTGCAAATT 57.475 29.630 11.91 3.25 35.41 1.82
156 157 8.139989 GGTAGATCTATTTTGAGCATTGCAAAT 58.860 33.333 11.91 10.46 35.41 2.32
157 158 7.122501 TGGTAGATCTATTTTGAGCATTGCAAA 59.877 33.333 11.91 3.28 33.76 3.68
158 159 6.602803 TGGTAGATCTATTTTGAGCATTGCAA 59.397 34.615 11.91 0.00 0.00 4.08
159 160 6.121590 TGGTAGATCTATTTTGAGCATTGCA 58.878 36.000 11.91 0.00 0.00 4.08
160 161 6.293845 CCTGGTAGATCTATTTTGAGCATTGC 60.294 42.308 5.57 0.00 0.00 3.56
161 162 6.994496 TCCTGGTAGATCTATTTTGAGCATTG 59.006 38.462 5.57 0.00 0.00 2.82
162 163 7.141758 TCCTGGTAGATCTATTTTGAGCATT 57.858 36.000 5.57 0.00 0.00 3.56
163 164 6.753913 TCCTGGTAGATCTATTTTGAGCAT 57.246 37.500 5.57 0.00 0.00 3.79
164 165 6.560003 TTCCTGGTAGATCTATTTTGAGCA 57.440 37.500 5.57 0.00 0.00 4.26
165 166 5.468409 GCTTCCTGGTAGATCTATTTTGAGC 59.532 44.000 5.57 8.16 0.00 4.26
166 167 6.586344 TGCTTCCTGGTAGATCTATTTTGAG 58.414 40.000 5.57 2.31 0.00 3.02
167 168 6.560003 TGCTTCCTGGTAGATCTATTTTGA 57.440 37.500 5.57 0.00 0.00 2.69
168 169 7.040823 GGATTGCTTCCTGGTAGATCTATTTTG 60.041 40.741 5.57 0.00 41.78 2.44
169 170 7.001073 GGATTGCTTCCTGGTAGATCTATTTT 58.999 38.462 5.57 0.00 41.78 1.82
170 171 6.101734 TGGATTGCTTCCTGGTAGATCTATTT 59.898 38.462 5.57 0.00 45.68 1.40
171 172 5.608437 TGGATTGCTTCCTGGTAGATCTATT 59.392 40.000 5.57 0.00 45.68 1.73
172 173 5.012561 GTGGATTGCTTCCTGGTAGATCTAT 59.987 44.000 5.57 0.00 45.68 1.98
173 174 4.345257 GTGGATTGCTTCCTGGTAGATCTA 59.655 45.833 4.32 0.00 45.68 1.98
174 175 3.135530 GTGGATTGCTTCCTGGTAGATCT 59.864 47.826 4.32 0.00 45.68 2.75
175 176 3.135530 AGTGGATTGCTTCCTGGTAGATC 59.864 47.826 4.32 0.00 45.68 2.75
176 177 3.118531 AGTGGATTGCTTCCTGGTAGAT 58.881 45.455 4.32 0.00 45.68 1.98
177 178 2.551270 AGTGGATTGCTTCCTGGTAGA 58.449 47.619 4.32 0.00 45.68 2.59
178 179 3.274288 GAAGTGGATTGCTTCCTGGTAG 58.726 50.000 7.63 0.00 45.68 3.18
179 180 3.350219 GAAGTGGATTGCTTCCTGGTA 57.650 47.619 7.63 0.00 45.68 3.25
180 181 2.206576 GAAGTGGATTGCTTCCTGGT 57.793 50.000 7.63 0.00 45.68 4.00
202 203 9.834628 CGCCTACATAAAAATTACAAAGAAGAA 57.165 29.630 0.00 0.00 0.00 2.52
203 204 9.005777 ACGCCTACATAAAAATTACAAAGAAGA 57.994 29.630 0.00 0.00 0.00 2.87
204 205 9.620660 AACGCCTACATAAAAATTACAAAGAAG 57.379 29.630 0.00 0.00 0.00 2.85
205 206 9.400638 CAACGCCTACATAAAAATTACAAAGAA 57.599 29.630 0.00 0.00 0.00 2.52
206 207 7.539366 GCAACGCCTACATAAAAATTACAAAGA 59.461 33.333 0.00 0.00 0.00 2.52
207 208 7.540745 AGCAACGCCTACATAAAAATTACAAAG 59.459 33.333 0.00 0.00 0.00 2.77
208 209 7.371936 AGCAACGCCTACATAAAAATTACAAA 58.628 30.769 0.00 0.00 0.00 2.83
209 210 6.915349 AGCAACGCCTACATAAAAATTACAA 58.085 32.000 0.00 0.00 0.00 2.41
210 211 6.403855 GGAGCAACGCCTACATAAAAATTACA 60.404 38.462 0.00 0.00 0.00 2.41
211 212 5.969435 GGAGCAACGCCTACATAAAAATTAC 59.031 40.000 0.00 0.00 0.00 1.89
212 213 5.883673 AGGAGCAACGCCTACATAAAAATTA 59.116 36.000 0.00 0.00 30.33 1.40
213 214 4.705023 AGGAGCAACGCCTACATAAAAATT 59.295 37.500 0.00 0.00 30.33 1.82
214 215 4.270008 AGGAGCAACGCCTACATAAAAAT 58.730 39.130 0.00 0.00 30.33 1.82
215 216 3.681593 AGGAGCAACGCCTACATAAAAA 58.318 40.909 0.00 0.00 30.33 1.94
216 217 3.343941 AGGAGCAACGCCTACATAAAA 57.656 42.857 0.00 0.00 30.33 1.52
217 218 3.006940 CAAGGAGCAACGCCTACATAAA 58.993 45.455 0.00 0.00 31.02 1.40
218 219 2.627945 CAAGGAGCAACGCCTACATAA 58.372 47.619 0.00 0.00 31.02 1.90
219 220 1.134521 CCAAGGAGCAACGCCTACATA 60.135 52.381 0.00 0.00 31.02 2.29
220 221 0.392998 CCAAGGAGCAACGCCTACAT 60.393 55.000 0.00 0.00 31.02 2.29
221 222 1.003839 CCAAGGAGCAACGCCTACA 60.004 57.895 0.00 0.00 31.02 2.74
222 223 0.248289 TACCAAGGAGCAACGCCTAC 59.752 55.000 0.00 0.00 31.02 3.18
223 224 0.248289 GTACCAAGGAGCAACGCCTA 59.752 55.000 0.00 0.00 31.02 3.93
224 225 1.003718 GTACCAAGGAGCAACGCCT 60.004 57.895 0.00 0.00 34.48 5.52
225 226 0.887387 TTGTACCAAGGAGCAACGCC 60.887 55.000 0.00 0.00 0.00 5.68
226 227 0.948678 TTTGTACCAAGGAGCAACGC 59.051 50.000 0.00 0.00 0.00 4.84
227 228 4.394920 ACATATTTGTACCAAGGAGCAACG 59.605 41.667 0.00 0.00 33.16 4.10
228 229 5.163652 GGACATATTTGTACCAAGGAGCAAC 60.164 44.000 0.00 0.00 35.79 4.17
229 230 4.947388 GGACATATTTGTACCAAGGAGCAA 59.053 41.667 0.00 0.00 35.79 3.91
230 231 4.227300 AGGACATATTTGTACCAAGGAGCA 59.773 41.667 0.00 0.00 37.40 4.26
231 232 4.781934 AGGACATATTTGTACCAAGGAGC 58.218 43.478 0.00 0.00 37.40 4.70
232 233 6.414732 TCAAGGACATATTTGTACCAAGGAG 58.585 40.000 0.00 0.00 37.40 3.69
233 234 6.381498 TCAAGGACATATTTGTACCAAGGA 57.619 37.500 0.00 0.00 37.40 3.36
234 235 7.228706 GGTATCAAGGACATATTTGTACCAAGG 59.771 40.741 0.00 0.00 37.40 3.61
235 236 7.773224 TGGTATCAAGGACATATTTGTACCAAG 59.227 37.037 12.23 0.00 37.40 3.61
236 237 7.634718 TGGTATCAAGGACATATTTGTACCAA 58.365 34.615 12.23 0.00 37.40 3.67
237 238 7.201702 TGGTATCAAGGACATATTTGTACCA 57.798 36.000 11.36 11.36 37.40 3.25
238 239 8.691661 AATGGTATCAAGGACATATTTGTACC 57.308 34.615 0.00 0.00 37.40 3.34
240 241 9.787435 GGTAATGGTATCAAGGACATATTTGTA 57.213 33.333 0.00 0.00 35.79 2.41
241 242 7.444183 CGGTAATGGTATCAAGGACATATTTGT 59.556 37.037 0.00 0.00 39.32 2.83
242 243 7.094805 CCGGTAATGGTATCAAGGACATATTTG 60.095 40.741 0.00 0.00 0.00 2.32
243 244 6.940298 CCGGTAATGGTATCAAGGACATATTT 59.060 38.462 0.00 0.00 0.00 1.40
244 245 6.271391 TCCGGTAATGGTATCAAGGACATATT 59.729 38.462 0.00 0.00 0.00 1.28
245 246 5.783360 TCCGGTAATGGTATCAAGGACATAT 59.217 40.000 0.00 0.00 0.00 1.78
246 247 5.149239 TCCGGTAATGGTATCAAGGACATA 58.851 41.667 0.00 0.00 0.00 2.29
247 248 3.971305 TCCGGTAATGGTATCAAGGACAT 59.029 43.478 0.00 0.00 0.00 3.06
248 249 3.376636 TCCGGTAATGGTATCAAGGACA 58.623 45.455 0.00 0.00 0.00 4.02
249 250 3.244112 CCTCCGGTAATGGTATCAAGGAC 60.244 52.174 0.00 0.00 0.00 3.85
250 251 2.969950 CCTCCGGTAATGGTATCAAGGA 59.030 50.000 0.00 0.00 0.00 3.36
251 252 2.038557 CCCTCCGGTAATGGTATCAAGG 59.961 54.545 0.00 0.00 0.00 3.61
252 253 2.969950 TCCCTCCGGTAATGGTATCAAG 59.030 50.000 0.00 0.00 0.00 3.02
253 254 3.049108 TCCCTCCGGTAATGGTATCAA 57.951 47.619 0.00 0.00 0.00 2.57
254 255 2.779429 TCCCTCCGGTAATGGTATCA 57.221 50.000 0.00 0.00 0.00 2.15
255 256 4.635699 AATTCCCTCCGGTAATGGTATC 57.364 45.455 0.00 0.00 0.00 2.24
256 257 4.202535 GGAAATTCCCTCCGGTAATGGTAT 60.203 45.833 0.00 0.00 0.00 2.73
257 258 3.136992 GGAAATTCCCTCCGGTAATGGTA 59.863 47.826 0.00 0.00 0.00 3.25
258 259 2.092049 GGAAATTCCCTCCGGTAATGGT 60.092 50.000 0.00 0.00 0.00 3.55
259 260 2.174854 AGGAAATTCCCTCCGGTAATGG 59.825 50.000 8.66 0.00 37.19 3.16
260 261 3.214328 CAGGAAATTCCCTCCGGTAATG 58.786 50.000 8.66 0.00 37.19 1.90
261 262 2.174854 CCAGGAAATTCCCTCCGGTAAT 59.825 50.000 8.66 0.00 37.19 1.89
262 263 1.562475 CCAGGAAATTCCCTCCGGTAA 59.438 52.381 8.66 0.00 37.19 2.85
263 264 1.209621 CCAGGAAATTCCCTCCGGTA 58.790 55.000 8.66 0.00 37.19 4.02
264 265 1.571773 CCCAGGAAATTCCCTCCGGT 61.572 60.000 8.66 0.00 37.19 5.28
265 266 1.227383 CCCAGGAAATTCCCTCCGG 59.773 63.158 8.66 0.00 37.19 5.14
266 267 1.141053 CTACCCAGGAAATTCCCTCCG 59.859 57.143 8.66 0.00 37.19 4.63
267 268 1.133761 GCTACCCAGGAAATTCCCTCC 60.134 57.143 8.66 0.00 37.19 4.30
268 269 1.133761 GGCTACCCAGGAAATTCCCTC 60.134 57.143 8.66 0.00 37.19 4.30
269 270 0.927029 GGCTACCCAGGAAATTCCCT 59.073 55.000 8.66 0.00 37.19 4.20
270 271 0.629058 TGGCTACCCAGGAAATTCCC 59.371 55.000 8.66 0.00 37.19 3.97
271 272 1.005450 TGTGGCTACCCAGGAAATTCC 59.995 52.381 3.29 3.29 43.18 3.01
272 273 2.092323 GTGTGGCTACCCAGGAAATTC 58.908 52.381 0.00 0.00 43.18 2.17
273 274 1.710809 AGTGTGGCTACCCAGGAAATT 59.289 47.619 0.00 0.00 43.18 1.82
274 275 1.372501 AGTGTGGCTACCCAGGAAAT 58.627 50.000 0.00 0.00 43.18 2.17
275 276 1.145571 AAGTGTGGCTACCCAGGAAA 58.854 50.000 0.00 0.00 43.18 3.13
276 277 1.145571 AAAGTGTGGCTACCCAGGAA 58.854 50.000 0.00 0.00 43.18 3.36
277 278 1.145571 AAAAGTGTGGCTACCCAGGA 58.854 50.000 0.00 0.00 43.18 3.86
278 279 1.202879 TCAAAAGTGTGGCTACCCAGG 60.203 52.381 0.00 0.00 43.18 4.45
279 280 2.270352 TCAAAAGTGTGGCTACCCAG 57.730 50.000 0.00 0.00 43.18 4.45
280 281 2.969821 ATCAAAAGTGTGGCTACCCA 57.030 45.000 0.00 0.00 39.32 4.51
281 282 3.421844 AGAATCAAAAGTGTGGCTACCC 58.578 45.455 0.00 0.00 0.00 3.69
282 283 6.759497 ATAAGAATCAAAAGTGTGGCTACC 57.241 37.500 0.00 0.00 0.00 3.18
283 284 9.722056 CATTATAAGAATCAAAAGTGTGGCTAC 57.278 33.333 0.00 0.00 0.00 3.58
284 285 8.405531 GCATTATAAGAATCAAAAGTGTGGCTA 58.594 33.333 0.00 0.00 0.00 3.93
285 286 7.123247 AGCATTATAAGAATCAAAAGTGTGGCT 59.877 33.333 0.00 0.00 0.00 4.75
286 287 7.260603 AGCATTATAAGAATCAAAAGTGTGGC 58.739 34.615 0.00 0.00 0.00 5.01
306 307 9.524496 TGAGCCAAATAAATCTATCATAGCATT 57.476 29.630 0.00 0.00 0.00 3.56
307 308 8.954350 GTGAGCCAAATAAATCTATCATAGCAT 58.046 33.333 0.00 0.00 0.00 3.79
308 309 7.391554 GGTGAGCCAAATAAATCTATCATAGCA 59.608 37.037 0.00 0.00 34.09 3.49
309 310 7.391554 TGGTGAGCCAAATAAATCTATCATAGC 59.608 37.037 0.00 0.00 42.83 2.97
310 311 8.853077 TGGTGAGCCAAATAAATCTATCATAG 57.147 34.615 0.00 0.00 42.83 2.23
326 327 0.178992 CCAAAAGAGGTGGTGAGCCA 60.179 55.000 0.00 0.00 43.73 4.75
327 328 2.646121 CCAAAAGAGGTGGTGAGCC 58.354 57.895 0.00 0.00 0.00 4.70
333 334 4.832823 AGTTCCATTAACCAAAAGAGGTGG 59.167 41.667 0.00 0.00 42.25 4.61
334 335 5.301805 ACAGTTCCATTAACCAAAAGAGGTG 59.698 40.000 0.00 0.00 42.25 4.00
335 336 5.454966 ACAGTTCCATTAACCAAAAGAGGT 58.545 37.500 0.00 0.00 45.91 3.85
336 337 7.703058 ATACAGTTCCATTAACCAAAAGAGG 57.297 36.000 0.00 0.00 39.03 3.69
343 344 8.798402 CCAAAGTTAATACAGTTCCATTAACCA 58.202 33.333 11.48 0.00 43.74 3.67
344 345 9.016438 TCCAAAGTTAATACAGTTCCATTAACC 57.984 33.333 11.48 0.00 43.74 2.85
346 347 8.736244 GCTCCAAAGTTAATACAGTTCCATTAA 58.264 33.333 0.00 0.00 0.00 1.40
347 348 7.885922 TGCTCCAAAGTTAATACAGTTCCATTA 59.114 33.333 0.00 0.00 0.00 1.90
348 349 6.719370 TGCTCCAAAGTTAATACAGTTCCATT 59.281 34.615 0.00 0.00 0.00 3.16
349 350 6.245408 TGCTCCAAAGTTAATACAGTTCCAT 58.755 36.000 0.00 0.00 0.00 3.41
350 351 5.626142 TGCTCCAAAGTTAATACAGTTCCA 58.374 37.500 0.00 0.00 0.00 3.53
351 352 6.151144 ACATGCTCCAAAGTTAATACAGTTCC 59.849 38.462 0.00 0.00 0.00 3.62
352 353 7.145932 ACATGCTCCAAAGTTAATACAGTTC 57.854 36.000 0.00 0.00 0.00 3.01
353 354 8.630054 TTACATGCTCCAAAGTTAATACAGTT 57.370 30.769 0.00 0.00 0.00 3.16
354 355 8.677300 CATTACATGCTCCAAAGTTAATACAGT 58.323 33.333 0.00 0.00 0.00 3.55
372 373 4.614555 TTACGAGCCTTTGCATTACATG 57.385 40.909 0.00 0.00 41.13 3.21
373 374 5.835113 AATTACGAGCCTTTGCATTACAT 57.165 34.783 0.00 0.00 41.13 2.29
374 375 6.935741 ATAATTACGAGCCTTTGCATTACA 57.064 33.333 0.00 0.00 41.13 2.41
375 376 7.414436 TCAATAATTACGAGCCTTTGCATTAC 58.586 34.615 0.00 0.00 41.13 1.89
376 377 7.561021 TCAATAATTACGAGCCTTTGCATTA 57.439 32.000 0.00 0.00 41.13 1.90
377 378 6.449635 TCAATAATTACGAGCCTTTGCATT 57.550 33.333 0.00 0.00 41.13 3.56
378 379 6.449635 TTCAATAATTACGAGCCTTTGCAT 57.550 33.333 0.00 0.00 41.13 3.96
379 380 5.888691 TTCAATAATTACGAGCCTTTGCA 57.111 34.783 0.00 0.00 41.13 4.08
380 381 7.755582 ATTTTCAATAATTACGAGCCTTTGC 57.244 32.000 0.00 0.00 37.95 3.68
383 384 9.185680 ACCTTATTTTCAATAATTACGAGCCTT 57.814 29.630 0.00 0.00 0.00 4.35
384 385 8.747538 ACCTTATTTTCAATAATTACGAGCCT 57.252 30.769 0.00 0.00 0.00 4.58
385 386 9.233232 CAACCTTATTTTCAATAATTACGAGCC 57.767 33.333 0.00 0.00 0.00 4.70
386 387 8.743099 GCAACCTTATTTTCAATAATTACGAGC 58.257 33.333 0.00 0.00 0.00 5.03
396 397 9.125026 CTCTATGGTAGCAACCTTATTTTCAAT 57.875 33.333 0.00 0.00 46.91 2.57
397 398 8.107095 ACTCTATGGTAGCAACCTTATTTTCAA 58.893 33.333 0.00 0.00 46.91 2.69
398 399 7.630082 ACTCTATGGTAGCAACCTTATTTTCA 58.370 34.615 0.00 0.00 46.91 2.69
399 400 7.769044 TGACTCTATGGTAGCAACCTTATTTTC 59.231 37.037 0.00 0.00 46.91 2.29
400 401 7.630082 TGACTCTATGGTAGCAACCTTATTTT 58.370 34.615 0.00 0.00 46.91 1.82
401 402 7.195374 TGACTCTATGGTAGCAACCTTATTT 57.805 36.000 0.00 0.00 46.91 1.40
402 403 6.808321 TGACTCTATGGTAGCAACCTTATT 57.192 37.500 0.00 0.00 46.91 1.40
403 404 6.808321 TTGACTCTATGGTAGCAACCTTAT 57.192 37.500 0.00 0.00 46.91 1.73
404 405 6.808321 ATTGACTCTATGGTAGCAACCTTA 57.192 37.500 0.00 0.00 46.91 2.69
405 406 5.700402 ATTGACTCTATGGTAGCAACCTT 57.300 39.130 0.00 0.00 46.91 3.50
406 407 5.189736 TCAATTGACTCTATGGTAGCAACCT 59.810 40.000 3.38 0.00 46.91 3.50
407 408 5.428253 TCAATTGACTCTATGGTAGCAACC 58.572 41.667 3.38 0.00 46.98 3.77
408 409 6.985188 TTCAATTGACTCTATGGTAGCAAC 57.015 37.500 7.89 0.00 0.00 4.17
409 410 7.994425 TTTTCAATTGACTCTATGGTAGCAA 57.006 32.000 7.89 0.00 0.00 3.91
410 411 8.579850 AATTTTCAATTGACTCTATGGTAGCA 57.420 30.769 7.89 0.00 0.00 3.49
411 412 9.508567 GAAATTTTCAATTGACTCTATGGTAGC 57.491 33.333 7.89 0.00 0.00 3.58
414 415 9.082313 AGTGAAATTTTCAATTGACTCTATGGT 57.918 29.630 13.21 0.00 42.15 3.55
421 422 9.014297 CCCTAGTAGTGAAATTTTCAATTGACT 57.986 33.333 16.26 15.75 42.15 3.41
422 423 9.010029 TCCCTAGTAGTGAAATTTTCAATTGAC 57.990 33.333 16.26 10.09 42.15 3.18
423 424 9.581289 TTCCCTAGTAGTGAAATTTTCAATTGA 57.419 29.630 16.26 3.38 42.15 2.57
427 428 8.635328 GGTTTTCCCTAGTAGTGAAATTTTCAA 58.365 33.333 13.21 0.00 42.15 2.69
428 429 8.002459 AGGTTTTCCCTAGTAGTGAAATTTTCA 58.998 33.333 7.74 7.74 43.87 2.69
429 430 8.405418 AGGTTTTCCCTAGTAGTGAAATTTTC 57.595 34.615 8.40 2.05 43.87 2.29
430 431 8.777578 AAGGTTTTCCCTAGTAGTGAAATTTT 57.222 30.769 8.40 2.43 45.47 1.82
434 435 9.103582 TGTATAAGGTTTTCCCTAGTAGTGAAA 57.896 33.333 3.94 3.94 45.47 2.69
435 436 8.534496 GTGTATAAGGTTTTCCCTAGTAGTGAA 58.466 37.037 0.00 0.00 45.47 3.18
463 464 1.089920 CCACGCTGCTGCTAAGATTT 58.910 50.000 14.03 0.00 36.97 2.17
728 729 4.846779 TCTTTTTAAGACATGGTGTGGC 57.153 40.909 0.00 0.00 35.41 5.01
733 734 7.480810 GTTGAGTGTTCTTTTTAAGACATGGT 58.519 34.615 0.00 0.00 37.23 3.55
742 743 2.288458 CGGGCGTTGAGTGTTCTTTTTA 59.712 45.455 0.00 0.00 0.00 1.52
748 749 0.389948 AGATCGGGCGTTGAGTGTTC 60.390 55.000 0.00 0.00 0.00 3.18
767 768 2.326428 GAAGACGGGATTGGGGATCTA 58.674 52.381 0.00 0.00 35.02 1.98
796 797 1.220236 CTTGGGAGAGGAGGAGAGGAT 59.780 57.143 0.00 0.00 0.00 3.24
867 869 4.221422 GAGTCATAGGCGGCGGCA 62.221 66.667 34.87 20.82 42.47 5.69
1178 1180 4.883300 GCGCGTAGTCGGACTCGG 62.883 72.222 15.05 8.84 37.56 4.63
1466 1472 1.135373 CGAGGTTGAGCGACATACAGT 60.135 52.381 0.00 0.00 0.00 3.55
1619 1625 8.691661 ATATGTAACCCAAATTCAGACATACC 57.308 34.615 0.00 0.00 32.72 2.73
1643 1649 3.698040 CCAAAATTCAGCCTGACAGCTAT 59.302 43.478 0.00 0.00 42.61 2.97
2123 2129 1.446907 AACGATGGCTGCTCTCAAAG 58.553 50.000 0.00 0.00 0.00 2.77
2172 2178 2.093638 CATACGAAAACAATGCGCTCG 58.906 47.619 9.73 10.41 35.68 5.03
2492 2507 8.227507 AGGTGCCTAAATTATTCTCCATATGTT 58.772 33.333 1.24 0.00 0.00 2.71
2493 2508 7.759607 AGGTGCCTAAATTATTCTCCATATGT 58.240 34.615 1.24 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.