Multiple sequence alignment - TraesCS7A01G423600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G423600 | chr7A | 100.000 | 3503 | 0 | 0 | 1 | 3503 | 616221619 | 616218117 | 0.000000e+00 | 6469.0 |
1 | TraesCS7A01G423600 | chr7A | 96.970 | 33 | 1 | 0 | 169 | 201 | 616221411 | 616221379 | 4.880000e-04 | 56.5 |
2 | TraesCS7A01G423600 | chr7A | 96.970 | 33 | 1 | 0 | 209 | 241 | 616221451 | 616221419 | 4.880000e-04 | 56.5 |
3 | TraesCS7A01G423600 | chr7B | 92.732 | 2559 | 95 | 33 | 412 | 2916 | 579994620 | 579997141 | 0.000000e+00 | 3611.0 |
4 | TraesCS7A01G423600 | chr7B | 88.961 | 462 | 37 | 6 | 2937 | 3398 | 579997296 | 579997743 | 3.050000e-155 | 558.0 |
5 | TraesCS7A01G423600 | chr7B | 87.209 | 86 | 4 | 1 | 79 | 164 | 579994415 | 579994493 | 1.340000e-14 | 91.6 |
6 | TraesCS7A01G423600 | chr7B | 82.500 | 120 | 4 | 8 | 245 | 364 | 579994516 | 579994618 | 4.820000e-14 | 89.8 |
7 | TraesCS7A01G423600 | chr7D | 92.917 | 2372 | 91 | 37 | 559 | 2857 | 536764199 | 536766566 | 0.000000e+00 | 3378.0 |
8 | TraesCS7A01G423600 | chr7D | 84.615 | 429 | 28 | 14 | 2990 | 3407 | 536767696 | 536768097 | 3.280000e-105 | 392.0 |
9 | TraesCS7A01G423600 | chr7D | 79.710 | 345 | 21 | 17 | 222 | 565 | 536761019 | 536761315 | 1.650000e-48 | 204.0 |
10 | TraesCS7A01G423600 | chr7D | 90.426 | 94 | 6 | 1 | 82 | 175 | 536760932 | 536761022 | 1.710000e-23 | 121.0 |
11 | TraesCS7A01G423600 | chr2D | 81.677 | 1550 | 231 | 26 | 1136 | 2666 | 20359591 | 20361106 | 0.000000e+00 | 1240.0 |
12 | TraesCS7A01G423600 | chr4D | 82.398 | 909 | 137 | 13 | 1764 | 2666 | 278346863 | 278345972 | 0.000000e+00 | 771.0 |
13 | TraesCS7A01G423600 | chr5A | 79.426 | 209 | 39 | 2 | 1748 | 1954 | 638069168 | 638068962 | 1.010000e-30 | 145.0 |
14 | TraesCS7A01G423600 | chrUn | 82.456 | 114 | 16 | 4 | 1740 | 1851 | 99864093 | 99864204 | 2.880000e-16 | 97.1 |
15 | TraesCS7A01G423600 | chr5B | 94.286 | 35 | 2 | 0 | 1636 | 1670 | 641043188 | 641043222 | 2.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G423600 | chr7A | 616218117 | 616221619 | 3502 | True | 2194.00 | 6469 | 97.9800 | 1 | 3503 | 3 | chr7A.!!$R1 | 3502 |
1 | TraesCS7A01G423600 | chr7B | 579994415 | 579997743 | 3328 | False | 1087.60 | 3611 | 87.8505 | 79 | 3398 | 4 | chr7B.!!$F1 | 3319 |
2 | TraesCS7A01G423600 | chr7D | 536760932 | 536768097 | 7165 | False | 1023.75 | 3378 | 86.9170 | 82 | 3407 | 4 | chr7D.!!$F1 | 3325 |
3 | TraesCS7A01G423600 | chr2D | 20359591 | 20361106 | 1515 | False | 1240.00 | 1240 | 81.6770 | 1136 | 2666 | 1 | chr2D.!!$F1 | 1530 |
4 | TraesCS7A01G423600 | chr4D | 278345972 | 278346863 | 891 | True | 771.00 | 771 | 82.3980 | 1764 | 2666 | 1 | chr4D.!!$R1 | 902 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
227 | 232 | 0.028902 | AGCTTTGCCGTCGTTTGTTC | 59.971 | 50.0 | 0.0 | 0.0 | 0.0 | 3.18 | F |
395 | 400 | 0.109342 | CTCGGCCCAGCTCCATTATT | 59.891 | 55.0 | 0.0 | 0.0 | 0.0 | 1.40 | F |
898 | 3840 | 0.325671 | TCCTCATCCCACTCCACTCC | 60.326 | 60.0 | 0.0 | 0.0 | 0.0 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1536 | 4511 | 1.448540 | CGACTTGAGCCGCATCCTT | 60.449 | 57.895 | 0.00 | 0.0 | 0.00 | 3.36 | R |
2343 | 5331 | 3.493830 | GATGTCGGCCGGCGTGATA | 62.494 | 63.158 | 32.38 | 19.2 | 0.00 | 2.15 | R |
2533 | 5521 | 1.866853 | GCTGCAACAAGCCACCTACC | 61.867 | 60.000 | 0.00 | 0.0 | 44.83 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.192000 | CGACAAGCCGCTCAAGAT | 57.808 | 55.556 | 0.00 | 0.00 | 0.00 | 2.40 |
18 | 19 | 1.712081 | CGACAAGCCGCTCAAGATG | 59.288 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
19 | 20 | 1.427020 | GACAAGCCGCTCAAGATGC | 59.573 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
20 | 21 | 1.300971 | GACAAGCCGCTCAAGATGCA | 61.301 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
21 | 22 | 1.303799 | ACAAGCCGCTCAAGATGCAG | 61.304 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
22 | 23 | 1.022982 | CAAGCCGCTCAAGATGCAGA | 61.023 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
23 | 24 | 1.023513 | AAGCCGCTCAAGATGCAGAC | 61.024 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
24 | 25 | 2.467826 | GCCGCTCAAGATGCAGACC | 61.468 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
25 | 26 | 1.078918 | CCGCTCAAGATGCAGACCA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
26 | 27 | 1.364626 | CCGCTCAAGATGCAGACCAC | 61.365 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
27 | 28 | 1.690283 | CGCTCAAGATGCAGACCACG | 61.690 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
28 | 29 | 0.390340 | GCTCAAGATGCAGACCACGA | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
29 | 30 | 1.941209 | GCTCAAGATGCAGACCACGAA | 60.941 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
30 | 31 | 2.416747 | CTCAAGATGCAGACCACGAAA | 58.583 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
31 | 32 | 2.143122 | TCAAGATGCAGACCACGAAAC | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 2.78 |
32 | 33 | 1.872952 | CAAGATGCAGACCACGAAACA | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
33 | 34 | 2.479566 | AGATGCAGACCACGAAACAT | 57.520 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
34 | 35 | 2.783135 | AGATGCAGACCACGAAACATT | 58.217 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
35 | 36 | 2.485426 | AGATGCAGACCACGAAACATTG | 59.515 | 45.455 | 0.00 | 0.00 | 0.00 | 2.82 |
36 | 37 | 0.950836 | TGCAGACCACGAAACATTGG | 59.049 | 50.000 | 0.00 | 0.00 | 39.00 | 3.16 |
37 | 38 | 0.387239 | GCAGACCACGAAACATTGGC | 60.387 | 55.000 | 0.00 | 0.00 | 36.20 | 4.52 |
38 | 39 | 0.240945 | CAGACCACGAAACATTGGCC | 59.759 | 55.000 | 0.00 | 0.00 | 36.20 | 5.36 |
39 | 40 | 1.209127 | GACCACGAAACATTGGCCG | 59.791 | 57.895 | 0.00 | 0.00 | 36.20 | 6.13 |
40 | 41 | 2.126502 | CCACGAAACATTGGCCGC | 60.127 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
41 | 42 | 2.126502 | CACGAAACATTGGCCGCC | 60.127 | 61.111 | 1.04 | 1.04 | 0.00 | 6.13 |
42 | 43 | 2.596046 | ACGAAACATTGGCCGCCA | 60.596 | 55.556 | 8.43 | 8.43 | 0.00 | 5.69 |
43 | 44 | 2.126502 | CGAAACATTGGCCGCCAC | 60.127 | 61.111 | 13.00 | 0.00 | 30.78 | 5.01 |
44 | 45 | 2.126502 | GAAACATTGGCCGCCACG | 60.127 | 61.111 | 13.00 | 9.14 | 30.78 | 4.94 |
45 | 46 | 4.356442 | AAACATTGGCCGCCACGC | 62.356 | 61.111 | 13.00 | 0.00 | 30.78 | 5.34 |
64 | 65 | 4.803426 | CCCGGCGTCTCTGCTGTC | 62.803 | 72.222 | 6.01 | 0.00 | 39.68 | 3.51 |
65 | 66 | 4.803426 | CCGGCGTCTCTGCTGTCC | 62.803 | 72.222 | 6.01 | 0.00 | 39.68 | 4.02 |
66 | 67 | 4.056125 | CGGCGTCTCTGCTGTCCA | 62.056 | 66.667 | 0.00 | 0.00 | 36.47 | 4.02 |
67 | 68 | 2.125753 | GGCGTCTCTGCTGTCCAG | 60.126 | 66.667 | 0.00 | 0.00 | 43.17 | 3.86 |
77 | 78 | 3.882025 | CTGTCCAGCCGAAAGAGC | 58.118 | 61.111 | 0.00 | 0.00 | 0.00 | 4.09 |
96 | 97 | 2.742372 | GCCCGTCGCTGTTCATGT | 60.742 | 61.111 | 0.00 | 0.00 | 0.00 | 3.21 |
97 | 98 | 2.740714 | GCCCGTCGCTGTTCATGTC | 61.741 | 63.158 | 0.00 | 0.00 | 0.00 | 3.06 |
121 | 126 | 4.137872 | GCACGGCGGCACCTACTA | 62.138 | 66.667 | 13.24 | 0.00 | 35.61 | 1.82 |
122 | 127 | 2.202703 | CACGGCGGCACCTACTAC | 60.203 | 66.667 | 13.24 | 0.00 | 35.61 | 2.73 |
123 | 128 | 3.455469 | ACGGCGGCACCTACTACC | 61.455 | 66.667 | 13.24 | 0.00 | 35.61 | 3.18 |
167 | 172 | 0.107459 | GGACTCTCCAATCCACCAGC | 60.107 | 60.000 | 0.00 | 0.00 | 36.28 | 4.85 |
171 | 176 | 1.203441 | TCTCCAATCCACCAGCAGCT | 61.203 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
172 | 177 | 0.323178 | CTCCAATCCACCAGCAGCTT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
173 | 178 | 0.112995 | TCCAATCCACCAGCAGCTTT | 59.887 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
174 | 179 | 0.245539 | CCAATCCACCAGCAGCTTTG | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
175 | 180 | 0.389426 | CAATCCACCAGCAGCTTTGC | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
176 | 181 | 1.538687 | AATCCACCAGCAGCTTTGCC | 61.539 | 55.000 | 0.00 | 0.00 | 34.90 | 4.52 |
177 | 182 | 4.047059 | CCACCAGCAGCTTTGCCG | 62.047 | 66.667 | 0.00 | 0.00 | 34.90 | 5.69 |
178 | 183 | 3.289834 | CACCAGCAGCTTTGCCGT | 61.290 | 61.111 | 0.00 | 0.00 | 34.90 | 5.68 |
179 | 184 | 2.980233 | ACCAGCAGCTTTGCCGTC | 60.980 | 61.111 | 0.00 | 0.00 | 34.90 | 4.79 |
180 | 185 | 4.093952 | CCAGCAGCTTTGCCGTCG | 62.094 | 66.667 | 0.00 | 0.00 | 34.90 | 5.12 |
202 | 207 | 0.320374 | TGTTCACGGCCTCGAAAGAT | 59.680 | 50.000 | 0.00 | 0.00 | 40.84 | 2.40 |
203 | 208 | 1.546923 | TGTTCACGGCCTCGAAAGATA | 59.453 | 47.619 | 0.00 | 0.00 | 40.84 | 1.98 |
204 | 209 | 2.194271 | GTTCACGGCCTCGAAAGATAG | 58.806 | 52.381 | 0.00 | 0.00 | 40.84 | 2.08 |
205 | 210 | 1.758936 | TCACGGCCTCGAAAGATAGA | 58.241 | 50.000 | 0.00 | 0.00 | 40.84 | 1.98 |
206 | 211 | 2.307768 | TCACGGCCTCGAAAGATAGAT | 58.692 | 47.619 | 0.00 | 0.00 | 40.84 | 1.98 |
207 | 212 | 2.693591 | TCACGGCCTCGAAAGATAGATT | 59.306 | 45.455 | 0.00 | 0.00 | 40.84 | 2.40 |
208 | 213 | 3.887110 | TCACGGCCTCGAAAGATAGATTA | 59.113 | 43.478 | 0.00 | 0.00 | 40.84 | 1.75 |
209 | 214 | 4.023107 | TCACGGCCTCGAAAGATAGATTAG | 60.023 | 45.833 | 0.00 | 0.00 | 40.84 | 1.73 |
210 | 215 | 3.246619 | CGGCCTCGAAAGATAGATTAGC | 58.753 | 50.000 | 0.00 | 0.00 | 40.84 | 3.09 |
211 | 216 | 3.057174 | CGGCCTCGAAAGATAGATTAGCT | 60.057 | 47.826 | 0.00 | 0.00 | 40.84 | 3.32 |
212 | 217 | 4.559704 | CGGCCTCGAAAGATAGATTAGCTT | 60.560 | 45.833 | 0.00 | 0.00 | 40.84 | 3.74 |
213 | 218 | 5.301555 | GGCCTCGAAAGATAGATTAGCTTT | 58.698 | 41.667 | 0.00 | 0.00 | 46.01 | 3.51 |
214 | 219 | 5.178438 | GGCCTCGAAAGATAGATTAGCTTTG | 59.822 | 44.000 | 4.28 | 0.00 | 43.67 | 2.77 |
215 | 220 | 5.333721 | GCCTCGAAAGATAGATTAGCTTTGC | 60.334 | 44.000 | 4.28 | 0.00 | 43.67 | 3.68 |
216 | 221 | 5.178438 | CCTCGAAAGATAGATTAGCTTTGCC | 59.822 | 44.000 | 4.28 | 0.00 | 43.67 | 4.52 |
217 | 222 | 4.745125 | TCGAAAGATAGATTAGCTTTGCCG | 59.255 | 41.667 | 4.28 | 3.64 | 43.67 | 5.69 |
218 | 223 | 4.508124 | CGAAAGATAGATTAGCTTTGCCGT | 59.492 | 41.667 | 4.28 | 0.00 | 43.67 | 5.68 |
219 | 224 | 5.332656 | CGAAAGATAGATTAGCTTTGCCGTC | 60.333 | 44.000 | 4.28 | 0.00 | 43.67 | 4.79 |
220 | 225 | 3.643763 | AGATAGATTAGCTTTGCCGTCG | 58.356 | 45.455 | 0.00 | 0.00 | 0.00 | 5.12 |
221 | 226 | 2.953466 | TAGATTAGCTTTGCCGTCGT | 57.047 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
222 | 227 | 2.094762 | AGATTAGCTTTGCCGTCGTT | 57.905 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
223 | 228 | 2.423577 | AGATTAGCTTTGCCGTCGTTT | 58.576 | 42.857 | 0.00 | 0.00 | 0.00 | 3.60 |
224 | 229 | 2.159627 | AGATTAGCTTTGCCGTCGTTTG | 59.840 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
225 | 230 | 1.301423 | TTAGCTTTGCCGTCGTTTGT | 58.699 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
226 | 231 | 1.301423 | TAGCTTTGCCGTCGTTTGTT | 58.699 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
227 | 232 | 0.028902 | AGCTTTGCCGTCGTTTGTTC | 59.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
228 | 233 | 0.248296 | GCTTTGCCGTCGTTTGTTCA | 60.248 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
229 | 234 | 1.462791 | CTTTGCCGTCGTTTGTTCAC | 58.537 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
230 | 235 | 0.247735 | TTTGCCGTCGTTTGTTCACG | 60.248 | 50.000 | 0.00 | 0.00 | 41.78 | 4.35 |
232 | 237 | 2.247267 | CCGTCGTTTGTTCACGGC | 59.753 | 61.111 | 0.00 | 0.00 | 46.08 | 5.68 |
233 | 238 | 2.247267 | CGTCGTTTGTTCACGGCC | 59.753 | 61.111 | 0.00 | 0.00 | 41.90 | 6.13 |
234 | 239 | 2.241880 | CGTCGTTTGTTCACGGCCT | 61.242 | 57.895 | 0.00 | 0.00 | 41.90 | 5.19 |
235 | 240 | 1.568025 | GTCGTTTGTTCACGGCCTC | 59.432 | 57.895 | 0.00 | 0.00 | 38.90 | 4.70 |
236 | 241 | 1.952133 | TCGTTTGTTCACGGCCTCG | 60.952 | 57.895 | 0.00 | 0.00 | 40.74 | 4.63 |
237 | 242 | 2.943653 | GTTTGTTCACGGCCTCGG | 59.056 | 61.111 | 0.00 | 0.00 | 41.39 | 4.63 |
238 | 243 | 1.595929 | GTTTGTTCACGGCCTCGGA | 60.596 | 57.895 | 0.00 | 0.00 | 41.39 | 4.55 |
239 | 244 | 1.146485 | TTTGTTCACGGCCTCGGAA | 59.854 | 52.632 | 0.00 | 0.00 | 41.39 | 4.30 |
240 | 245 | 0.882927 | TTTGTTCACGGCCTCGGAAG | 60.883 | 55.000 | 0.00 | 0.00 | 41.39 | 3.46 |
241 | 246 | 2.434359 | GTTCACGGCCTCGGAAGG | 60.434 | 66.667 | 0.00 | 0.00 | 46.44 | 3.46 |
242 | 247 | 2.602267 | TTCACGGCCTCGGAAGGA | 60.602 | 61.111 | 0.00 | 0.00 | 46.67 | 3.36 |
243 | 248 | 2.211410 | TTCACGGCCTCGGAAGGAA | 61.211 | 57.895 | 0.00 | 0.00 | 46.67 | 3.36 |
317 | 322 | 3.320541 | CCACATCCACAAAGCAAAAGGTA | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
320 | 325 | 4.520492 | ACATCCACAAAGCAAAAGGTAGAG | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
321 | 326 | 4.164843 | TCCACAAAGCAAAAGGTAGAGT | 57.835 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
322 | 327 | 5.298989 | TCCACAAAGCAAAAGGTAGAGTA | 57.701 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
323 | 328 | 5.686753 | TCCACAAAGCAAAAGGTAGAGTAA | 58.313 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
324 | 329 | 5.763204 | TCCACAAAGCAAAAGGTAGAGTAAG | 59.237 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
325 | 330 | 5.452777 | CACAAAGCAAAAGGTAGAGTAAGC | 58.547 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
326 | 331 | 5.008613 | CACAAAGCAAAAGGTAGAGTAAGCA | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
327 | 332 | 5.239525 | ACAAAGCAAAAGGTAGAGTAAGCAG | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
368 | 373 | 0.643820 | GCAACCGTCGTACTGTATGC | 59.356 | 55.000 | 2.09 | 0.00 | 0.00 | 3.14 |
380 | 385 | 4.378563 | CGTACTGTATGCTCTAATCCTCGG | 60.379 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
389 | 394 | 2.105806 | CTAATCCTCGGCCCAGCTCC | 62.106 | 65.000 | 0.00 | 0.00 | 0.00 | 4.70 |
390 | 395 | 2.889521 | TAATCCTCGGCCCAGCTCCA | 62.890 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
391 | 396 | 4.804420 | TCCTCGGCCCAGCTCCAT | 62.804 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
392 | 397 | 3.801997 | CCTCGGCCCAGCTCCATT | 61.802 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
393 | 398 | 2.443394 | CCTCGGCCCAGCTCCATTA | 61.443 | 63.158 | 0.00 | 0.00 | 0.00 | 1.90 |
394 | 399 | 1.757306 | CTCGGCCCAGCTCCATTAT | 59.243 | 57.895 | 0.00 | 0.00 | 0.00 | 1.28 |
395 | 400 | 0.109342 | CTCGGCCCAGCTCCATTATT | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
396 | 401 | 1.347707 | CTCGGCCCAGCTCCATTATTA | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 0.98 |
397 | 402 | 1.985159 | TCGGCCCAGCTCCATTATTAT | 59.015 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
398 | 403 | 2.375174 | TCGGCCCAGCTCCATTATTATT | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
399 | 404 | 3.585289 | TCGGCCCAGCTCCATTATTATTA | 59.415 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
400 | 405 | 4.227300 | TCGGCCCAGCTCCATTATTATTAT | 59.773 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
401 | 406 | 4.949856 | CGGCCCAGCTCCATTATTATTATT | 59.050 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
402 | 407 | 6.069905 | TCGGCCCAGCTCCATTATTATTATTA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
403 | 408 | 6.772716 | CGGCCCAGCTCCATTATTATTATTAT | 59.227 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
404 | 409 | 7.285401 | CGGCCCAGCTCCATTATTATTATTATT | 59.715 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
405 | 410 | 9.640952 | GGCCCAGCTCCATTATTATTATTATTA | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
434 | 439 | 3.634397 | ATTATCAGTGGACTGTGTGGG | 57.366 | 47.619 | 6.68 | 0.00 | 44.12 | 4.61 |
481 | 486 | 1.310933 | AAGATCGAGGCCACGTACGT | 61.311 | 55.000 | 22.14 | 16.72 | 34.70 | 3.57 |
483 | 488 | 2.659017 | GATCGAGGCCACGTACGTCC | 62.659 | 65.000 | 19.94 | 17.80 | 34.70 | 4.79 |
484 | 489 | 4.487412 | CGAGGCCACGTACGTCCC | 62.487 | 72.222 | 19.94 | 20.75 | 0.00 | 4.46 |
485 | 490 | 4.487412 | GAGGCCACGTACGTCCCG | 62.487 | 72.222 | 19.94 | 10.05 | 0.00 | 5.14 |
488 | 493 | 4.783734 | GCCACGTACGTCCCGGTC | 62.784 | 72.222 | 19.94 | 9.53 | 0.00 | 4.79 |
503 | 508 | 2.357517 | GTCGTGGTGGTGCTCCTG | 60.358 | 66.667 | 6.34 | 0.00 | 34.23 | 3.86 |
510 | 515 | 4.994471 | TGGTGCTCCTGCGTGCTG | 62.994 | 66.667 | 6.34 | 0.00 | 43.34 | 4.41 |
513 | 518 | 2.666190 | TGCTCCTGCGTGCTGAAC | 60.666 | 61.111 | 0.00 | 0.00 | 43.34 | 3.18 |
514 | 519 | 3.426568 | GCTCCTGCGTGCTGAACC | 61.427 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
515 | 520 | 3.114616 | CTCCTGCGTGCTGAACCG | 61.115 | 66.667 | 0.00 | 0.00 | 0.00 | 4.44 |
516 | 521 | 3.865929 | CTCCTGCGTGCTGAACCGT | 62.866 | 63.158 | 0.00 | 0.00 | 0.00 | 4.83 |
517 | 522 | 2.048597 | CCTGCGTGCTGAACCGTA | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
518 | 523 | 2.380410 | CCTGCGTGCTGAACCGTAC | 61.380 | 63.158 | 0.00 | 0.00 | 0.00 | 3.67 |
561 | 3455 | 1.000274 | GTGGGTTGATCAAAGTGGTGC | 60.000 | 52.381 | 10.35 | 0.00 | 0.00 | 5.01 |
581 | 3475 | 3.831883 | GTGCATGCATGGACGGAT | 58.168 | 55.556 | 31.53 | 0.00 | 39.29 | 4.18 |
857 | 3799 | 1.441732 | CCCCGCGCCACCTATAAAAC | 61.442 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 |
860 | 3802 | 0.745128 | CGCGCCACCTATAAAACCCA | 60.745 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
861 | 3803 | 0.736636 | GCGCCACCTATAAAACCCAC | 59.263 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
865 | 3807 | 1.641714 | CCACCTATAAAACCCACCCCA | 59.358 | 52.381 | 0.00 | 0.00 | 0.00 | 4.96 |
867 | 3809 | 1.642238 | ACCTATAAAACCCACCCCACC | 59.358 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
898 | 3840 | 0.325671 | TCCTCATCCCACTCCACTCC | 60.326 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
984 | 3938 | 1.358725 | CGCGCACCAAAGCTAAGCTA | 61.359 | 55.000 | 8.75 | 0.00 | 38.25 | 3.32 |
985 | 3939 | 0.802494 | GCGCACCAAAGCTAAGCTAA | 59.198 | 50.000 | 0.30 | 0.00 | 38.25 | 3.09 |
986 | 3940 | 1.199097 | GCGCACCAAAGCTAAGCTAAA | 59.801 | 47.619 | 0.30 | 0.00 | 38.25 | 1.85 |
987 | 3941 | 2.729156 | GCGCACCAAAGCTAAGCTAAAG | 60.729 | 50.000 | 0.30 | 0.00 | 38.25 | 1.85 |
988 | 3942 | 2.729156 | CGCACCAAAGCTAAGCTAAAGC | 60.729 | 50.000 | 12.03 | 12.03 | 38.25 | 3.51 |
1536 | 4511 | 1.141665 | CATCATCGACGAGGCCACA | 59.858 | 57.895 | 5.01 | 0.00 | 0.00 | 4.17 |
2007 | 4988 | 4.030452 | GACAACACGCAGCTGGCC | 62.030 | 66.667 | 17.12 | 0.00 | 40.31 | 5.36 |
2505 | 5493 | 2.584965 | AGAGGAGAAGATGGAGTGAGGA | 59.415 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2512 | 5500 | 5.028802 | AGAAGATGGAGTGAGGAAGATCAA | 58.971 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2533 | 5521 | 3.674528 | AGACACAGAGATTGACCAGTG | 57.325 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
2585 | 5573 | 6.976925 | GGAGGATTGCAGATGAAATTAACTTG | 59.023 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2678 | 5666 | 1.242076 | ACAAGTGGCTGCTTGATCAC | 58.758 | 50.000 | 22.34 | 2.91 | 46.34 | 3.06 |
2711 | 5699 | 8.596380 | CGATAGATCCTCTTGTAGTTTTTGTTC | 58.404 | 37.037 | 0.00 | 0.00 | 39.76 | 3.18 |
2759 | 5760 | 6.992715 | AGTTAAGCTCAGAAGAAAAAGCAGTA | 59.007 | 34.615 | 0.00 | 0.00 | 37.22 | 2.74 |
2863 | 5933 | 5.116882 | AGGTCAGGATAAAATACGAGCAAC | 58.883 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2908 | 5978 | 2.802415 | CGAAGATGGAGTGAGGCAGATG | 60.802 | 54.545 | 0.00 | 0.00 | 0.00 | 2.90 |
2936 | 6111 | 4.156190 | ACTGAGATTGACCAGTACGTACAG | 59.844 | 45.833 | 26.55 | 18.88 | 41.38 | 2.74 |
2937 | 6112 | 3.119602 | TGAGATTGACCAGTACGTACAGC | 60.120 | 47.826 | 26.55 | 13.01 | 0.00 | 4.40 |
2938 | 6113 | 2.823747 | AGATTGACCAGTACGTACAGCA | 59.176 | 45.455 | 26.55 | 15.23 | 0.00 | 4.41 |
2939 | 6114 | 2.717580 | TTGACCAGTACGTACAGCAG | 57.282 | 50.000 | 26.55 | 14.13 | 0.00 | 4.24 |
2940 | 6115 | 1.900245 | TGACCAGTACGTACAGCAGA | 58.100 | 50.000 | 26.55 | 5.65 | 0.00 | 4.26 |
2941 | 6116 | 2.232399 | TGACCAGTACGTACAGCAGAA | 58.768 | 47.619 | 26.55 | 5.79 | 0.00 | 3.02 |
2943 | 6118 | 1.544691 | ACCAGTACGTACAGCAGAAGG | 59.455 | 52.381 | 26.55 | 16.87 | 0.00 | 3.46 |
2944 | 6119 | 1.816835 | CCAGTACGTACAGCAGAAGGA | 59.183 | 52.381 | 26.55 | 0.00 | 0.00 | 3.36 |
2945 | 6120 | 2.230508 | CCAGTACGTACAGCAGAAGGAA | 59.769 | 50.000 | 26.55 | 0.00 | 0.00 | 3.36 |
2965 | 6166 | 9.886132 | GAAGGAACTAATAACTTCAGTATTCCA | 57.114 | 33.333 | 0.00 | 0.00 | 38.49 | 3.53 |
2967 | 6168 | 9.838339 | AGGAACTAATAACTTCAGTATTCCATG | 57.162 | 33.333 | 0.00 | 0.00 | 36.02 | 3.66 |
2968 | 6169 | 9.057089 | GGAACTAATAACTTCAGTATTCCATGG | 57.943 | 37.037 | 4.97 | 4.97 | 0.00 | 3.66 |
2976 | 6177 | 5.367937 | ACTTCAGTATTCCATGGTATCTGCT | 59.632 | 40.000 | 12.58 | 4.60 | 0.00 | 4.24 |
2994 | 7116 | 3.997681 | CTGCTGCATCAGATTCAGATAGG | 59.002 | 47.826 | 12.23 | 0.00 | 36.19 | 2.57 |
3011 | 7133 | 6.874664 | TCAGATAGGTCGATATGTAGAGTGAC | 59.125 | 42.308 | 0.00 | 0.00 | 0.00 | 3.67 |
3012 | 7134 | 6.651225 | CAGATAGGTCGATATGTAGAGTGACA | 59.349 | 42.308 | 0.00 | 0.00 | 0.00 | 3.58 |
3044 | 7173 | 1.131883 | GTCATCATGTGGCTGCTTGAC | 59.868 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3074 | 7203 | 7.448748 | AACTATTCTTCCTTTTGTTGCGTAT | 57.551 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3075 | 7204 | 8.556213 | AACTATTCTTCCTTTTGTTGCGTATA | 57.444 | 30.769 | 0.00 | 0.00 | 0.00 | 1.47 |
3095 | 7224 | 2.517959 | AGTGGTACGCCTGTGTACTTA | 58.482 | 47.619 | 17.63 | 7.41 | 43.36 | 2.24 |
3114 | 7243 | 8.150296 | TGTACTTACATGATGGATGGATGTTAG | 58.850 | 37.037 | 0.00 | 0.00 | 35.41 | 2.34 |
3224 | 7353 | 8.014517 | CACTTCTTCTATTCTTGTTTGAGCTTC | 58.985 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
3261 | 7390 | 7.775093 | TGATGTCAAAATTTAGGTCAGGATAGG | 59.225 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3322 | 7451 | 0.869730 | CCGAATTGAAAACGACGGGT | 59.130 | 50.000 | 0.00 | 0.00 | 36.17 | 5.28 |
3327 | 7456 | 4.318974 | CGAATTGAAAACGACGGGTAAAGT | 60.319 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
3350 | 7479 | 0.390735 | ATACGTCGTGCCTTTCCACC | 60.391 | 55.000 | 8.47 | 0.00 | 32.10 | 4.61 |
3359 | 7488 | 3.181485 | CGTGCCTTTCCACCTTGTTTTTA | 60.181 | 43.478 | 0.00 | 0.00 | 32.10 | 1.52 |
3360 | 7489 | 4.678309 | CGTGCCTTTCCACCTTGTTTTTAA | 60.678 | 41.667 | 0.00 | 0.00 | 32.10 | 1.52 |
3363 | 7492 | 6.422701 | GTGCCTTTCCACCTTGTTTTTAATAC | 59.577 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
3367 | 7496 | 4.080687 | TCCACCTTGTTTTTAATACGGGG | 58.919 | 43.478 | 0.00 | 0.00 | 0.00 | 5.73 |
3407 | 7537 | 9.431887 | CTTTATTACCAGTTTAGCAGAGTTACA | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3408 | 7538 | 9.781633 | TTTATTACCAGTTTAGCAGAGTTACAA | 57.218 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3409 | 7539 | 7.668525 | ATTACCAGTTTAGCAGAGTTACAAC | 57.331 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3410 | 7540 | 5.031066 | ACCAGTTTAGCAGAGTTACAACA | 57.969 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3411 | 7541 | 5.621193 | ACCAGTTTAGCAGAGTTACAACAT | 58.379 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
3412 | 7542 | 5.701290 | ACCAGTTTAGCAGAGTTACAACATC | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3413 | 7543 | 5.934625 | CCAGTTTAGCAGAGTTACAACATCT | 59.065 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3414 | 7544 | 7.097192 | CCAGTTTAGCAGAGTTACAACATCTA | 58.903 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
3415 | 7545 | 7.063544 | CCAGTTTAGCAGAGTTACAACATCTAC | 59.936 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
3416 | 7546 | 7.598869 | CAGTTTAGCAGAGTTACAACATCTACA | 59.401 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3417 | 7547 | 7.815068 | AGTTTAGCAGAGTTACAACATCTACAG | 59.185 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3418 | 7548 | 5.730296 | AGCAGAGTTACAACATCTACAGT | 57.270 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
3419 | 7549 | 5.715070 | AGCAGAGTTACAACATCTACAGTC | 58.285 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3420 | 7550 | 4.865365 | GCAGAGTTACAACATCTACAGTCC | 59.135 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3421 | 7551 | 5.096169 | CAGAGTTACAACATCTACAGTCCG | 58.904 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
3422 | 7552 | 5.008331 | AGAGTTACAACATCTACAGTCCGA | 58.992 | 41.667 | 0.00 | 0.00 | 0.00 | 4.55 |
3423 | 7553 | 5.056894 | AGTTACAACATCTACAGTCCGAC | 57.943 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3424 | 7554 | 2.631418 | ACAACATCTACAGTCCGACG | 57.369 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
3425 | 7555 | 1.884579 | ACAACATCTACAGTCCGACGT | 59.115 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
3426 | 7556 | 2.095364 | ACAACATCTACAGTCCGACGTC | 60.095 | 50.000 | 5.18 | 5.18 | 0.00 | 4.34 |
3427 | 7557 | 2.110901 | ACATCTACAGTCCGACGTCT | 57.889 | 50.000 | 14.70 | 0.00 | 0.00 | 4.18 |
3428 | 7558 | 2.008329 | ACATCTACAGTCCGACGTCTC | 58.992 | 52.381 | 14.70 | 4.16 | 0.00 | 3.36 |
3429 | 7559 | 2.007608 | CATCTACAGTCCGACGTCTCA | 58.992 | 52.381 | 14.70 | 0.00 | 0.00 | 3.27 |
3430 | 7560 | 2.174363 | TCTACAGTCCGACGTCTCAA | 57.826 | 50.000 | 14.70 | 0.00 | 0.00 | 3.02 |
3431 | 7561 | 2.497138 | TCTACAGTCCGACGTCTCAAA | 58.503 | 47.619 | 14.70 | 0.00 | 0.00 | 2.69 |
3432 | 7562 | 2.225019 | TCTACAGTCCGACGTCTCAAAC | 59.775 | 50.000 | 14.70 | 6.22 | 0.00 | 2.93 |
3433 | 7563 | 0.031721 | ACAGTCCGACGTCTCAAACC | 59.968 | 55.000 | 14.70 | 0.00 | 0.00 | 3.27 |
3434 | 7564 | 0.031585 | CAGTCCGACGTCTCAAACCA | 59.968 | 55.000 | 14.70 | 0.00 | 0.00 | 3.67 |
3435 | 7565 | 0.966920 | AGTCCGACGTCTCAAACCAT | 59.033 | 50.000 | 14.70 | 0.00 | 0.00 | 3.55 |
3436 | 7566 | 1.067776 | AGTCCGACGTCTCAAACCATC | 60.068 | 52.381 | 14.70 | 0.00 | 0.00 | 3.51 |
3437 | 7567 | 1.067776 | GTCCGACGTCTCAAACCATCT | 60.068 | 52.381 | 14.70 | 0.00 | 0.00 | 2.90 |
3438 | 7568 | 1.201647 | TCCGACGTCTCAAACCATCTC | 59.798 | 52.381 | 14.70 | 0.00 | 0.00 | 2.75 |
3439 | 7569 | 1.202582 | CCGACGTCTCAAACCATCTCT | 59.797 | 52.381 | 14.70 | 0.00 | 0.00 | 3.10 |
3440 | 7570 | 2.352814 | CCGACGTCTCAAACCATCTCTT | 60.353 | 50.000 | 14.70 | 0.00 | 0.00 | 2.85 |
3441 | 7571 | 3.119602 | CCGACGTCTCAAACCATCTCTTA | 60.120 | 47.826 | 14.70 | 0.00 | 0.00 | 2.10 |
3442 | 7572 | 4.440250 | CCGACGTCTCAAACCATCTCTTAT | 60.440 | 45.833 | 14.70 | 0.00 | 0.00 | 1.73 |
3443 | 7573 | 5.220989 | CCGACGTCTCAAACCATCTCTTATA | 60.221 | 44.000 | 14.70 | 0.00 | 0.00 | 0.98 |
3444 | 7574 | 5.681982 | CGACGTCTCAAACCATCTCTTATAC | 59.318 | 44.000 | 14.70 | 0.00 | 0.00 | 1.47 |
3445 | 7575 | 6.525578 | ACGTCTCAAACCATCTCTTATACA | 57.474 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3446 | 7576 | 7.113658 | ACGTCTCAAACCATCTCTTATACAT | 57.886 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3447 | 7577 | 7.556844 | ACGTCTCAAACCATCTCTTATACATT | 58.443 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3448 | 7578 | 7.707035 | ACGTCTCAAACCATCTCTTATACATTC | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
3449 | 7579 | 7.706607 | CGTCTCAAACCATCTCTTATACATTCA | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3450 | 7580 | 8.821894 | GTCTCAAACCATCTCTTATACATTCAC | 58.178 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3451 | 7581 | 7.706607 | TCTCAAACCATCTCTTATACATTCACG | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
3452 | 7582 | 6.761242 | TCAAACCATCTCTTATACATTCACGG | 59.239 | 38.462 | 0.00 | 0.00 | 0.00 | 4.94 |
3453 | 7583 | 6.479972 | AACCATCTCTTATACATTCACGGA | 57.520 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
3454 | 7584 | 6.672266 | ACCATCTCTTATACATTCACGGAT | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
3455 | 7585 | 6.459066 | ACCATCTCTTATACATTCACGGATG | 58.541 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3456 | 7586 | 5.349817 | CCATCTCTTATACATTCACGGATGC | 59.650 | 44.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3457 | 7587 | 4.546570 | TCTCTTATACATTCACGGATGCG | 58.453 | 43.478 | 4.58 | 4.58 | 0.00 | 4.73 |
3458 | 7588 | 4.037565 | TCTCTTATACATTCACGGATGCGT | 59.962 | 41.667 | 6.39 | 6.39 | 0.00 | 5.24 |
3459 | 7589 | 4.295870 | TCTTATACATTCACGGATGCGTC | 58.704 | 43.478 | 10.14 | 0.00 | 0.00 | 5.19 |
3460 | 7590 | 1.865865 | ATACATTCACGGATGCGTCC | 58.134 | 50.000 | 15.54 | 15.54 | 41.40 | 4.79 |
3468 | 7598 | 3.409856 | GGATGCGTCCGGTCAATG | 58.590 | 61.111 | 9.75 | 0.00 | 34.13 | 2.82 |
3469 | 7599 | 1.153449 | GGATGCGTCCGGTCAATGA | 60.153 | 57.895 | 9.75 | 0.00 | 34.13 | 2.57 |
3470 | 7600 | 1.429148 | GGATGCGTCCGGTCAATGAC | 61.429 | 60.000 | 9.75 | 4.51 | 34.13 | 3.06 |
3485 | 7615 | 6.214191 | GTCAATGACCAGACAATAGAGAGA | 57.786 | 41.667 | 1.10 | 0.00 | 34.93 | 3.10 |
3486 | 7616 | 6.634805 | GTCAATGACCAGACAATAGAGAGAA | 58.365 | 40.000 | 1.10 | 0.00 | 34.93 | 2.87 |
3487 | 7617 | 7.099764 | GTCAATGACCAGACAATAGAGAGAAA | 58.900 | 38.462 | 1.10 | 0.00 | 34.93 | 2.52 |
3488 | 7618 | 7.604164 | GTCAATGACCAGACAATAGAGAGAAAA | 59.396 | 37.037 | 1.10 | 0.00 | 34.93 | 2.29 |
3489 | 7619 | 8.156820 | TCAATGACCAGACAATAGAGAGAAAAA | 58.843 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.712081 | CATCTTGAGCGGCTTGTCG | 59.288 | 57.895 | 2.97 | 0.00 | 0.00 | 4.35 |
1 | 2 | 1.300971 | TGCATCTTGAGCGGCTTGTC | 61.301 | 55.000 | 2.97 | 0.00 | 33.85 | 3.18 |
2 | 3 | 1.302752 | TGCATCTTGAGCGGCTTGT | 60.303 | 52.632 | 2.97 | 0.00 | 33.85 | 3.16 |
3 | 4 | 1.022982 | TCTGCATCTTGAGCGGCTTG | 61.023 | 55.000 | 2.97 | 0.00 | 38.26 | 4.01 |
4 | 5 | 1.023513 | GTCTGCATCTTGAGCGGCTT | 61.024 | 55.000 | 2.97 | 0.00 | 38.26 | 4.35 |
5 | 6 | 1.449246 | GTCTGCATCTTGAGCGGCT | 60.449 | 57.895 | 0.00 | 0.00 | 38.26 | 5.52 |
6 | 7 | 2.467826 | GGTCTGCATCTTGAGCGGC | 61.468 | 63.158 | 0.00 | 0.00 | 38.26 | 6.53 |
7 | 8 | 1.078918 | TGGTCTGCATCTTGAGCGG | 60.079 | 57.895 | 0.00 | 0.00 | 39.72 | 5.52 |
8 | 9 | 1.690283 | CGTGGTCTGCATCTTGAGCG | 61.690 | 60.000 | 0.00 | 0.00 | 33.88 | 5.03 |
9 | 10 | 0.390340 | TCGTGGTCTGCATCTTGAGC | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
10 | 11 | 2.084610 | TTCGTGGTCTGCATCTTGAG | 57.915 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
11 | 12 | 2.143122 | GTTTCGTGGTCTGCATCTTGA | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
12 | 13 | 1.872952 | TGTTTCGTGGTCTGCATCTTG | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
13 | 14 | 2.254546 | TGTTTCGTGGTCTGCATCTT | 57.745 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
14 | 15 | 2.479566 | ATGTTTCGTGGTCTGCATCT | 57.520 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
15 | 16 | 2.414559 | CCAATGTTTCGTGGTCTGCATC | 60.415 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
16 | 17 | 1.541147 | CCAATGTTTCGTGGTCTGCAT | 59.459 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
17 | 18 | 0.950836 | CCAATGTTTCGTGGTCTGCA | 59.049 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
18 | 19 | 0.387239 | GCCAATGTTTCGTGGTCTGC | 60.387 | 55.000 | 0.00 | 0.00 | 37.23 | 4.26 |
19 | 20 | 0.240945 | GGCCAATGTTTCGTGGTCTG | 59.759 | 55.000 | 0.00 | 0.00 | 36.54 | 3.51 |
20 | 21 | 1.234615 | CGGCCAATGTTTCGTGGTCT | 61.235 | 55.000 | 2.24 | 0.00 | 37.37 | 3.85 |
21 | 22 | 1.209127 | CGGCCAATGTTTCGTGGTC | 59.791 | 57.895 | 2.24 | 0.00 | 37.23 | 4.02 |
22 | 23 | 2.914908 | GCGGCCAATGTTTCGTGGT | 61.915 | 57.895 | 2.24 | 0.00 | 37.23 | 4.16 |
23 | 24 | 2.126502 | GCGGCCAATGTTTCGTGG | 60.127 | 61.111 | 2.24 | 0.00 | 38.00 | 4.94 |
24 | 25 | 2.126502 | GGCGGCCAATGTTTCGTG | 60.127 | 61.111 | 15.62 | 0.00 | 0.00 | 4.35 |
25 | 26 | 2.596046 | TGGCGGCCAATGTTTCGT | 60.596 | 55.556 | 21.55 | 0.00 | 0.00 | 3.85 |
26 | 27 | 2.126502 | GTGGCGGCCAATGTTTCG | 60.127 | 61.111 | 25.70 | 0.00 | 34.18 | 3.46 |
27 | 28 | 2.126502 | CGTGGCGGCCAATGTTTC | 60.127 | 61.111 | 25.70 | 9.25 | 34.18 | 2.78 |
28 | 29 | 4.356442 | GCGTGGCGGCCAATGTTT | 62.356 | 61.111 | 25.70 | 0.00 | 34.18 | 2.83 |
47 | 48 | 4.803426 | GACAGCAGAGACGCCGGG | 62.803 | 72.222 | 2.18 | 0.00 | 0.00 | 5.73 |
48 | 49 | 4.803426 | GGACAGCAGAGACGCCGG | 62.803 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
49 | 50 | 3.978723 | CTGGACAGCAGAGACGCCG | 62.979 | 68.421 | 0.00 | 0.00 | 0.00 | 6.46 |
50 | 51 | 2.125753 | CTGGACAGCAGAGACGCC | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
60 | 61 | 1.743252 | GGCTCTTTCGGCTGGACAG | 60.743 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
61 | 62 | 2.347490 | GGCTCTTTCGGCTGGACA | 59.653 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
62 | 63 | 2.815647 | CGGCTCTTTCGGCTGGAC | 60.816 | 66.667 | 0.00 | 0.00 | 32.91 | 4.02 |
63 | 64 | 4.760047 | GCGGCTCTTTCGGCTGGA | 62.760 | 66.667 | 0.00 | 0.00 | 36.65 | 3.86 |
117 | 122 | 4.229123 | AGCAACTGAGGTAGGTAGGTAGTA | 59.771 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
118 | 123 | 3.011482 | AGCAACTGAGGTAGGTAGGTAGT | 59.989 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
119 | 124 | 3.633065 | GAGCAACTGAGGTAGGTAGGTAG | 59.367 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 |
120 | 125 | 3.268856 | AGAGCAACTGAGGTAGGTAGGTA | 59.731 | 47.826 | 0.00 | 0.00 | 0.00 | 3.08 |
121 | 126 | 2.043252 | AGAGCAACTGAGGTAGGTAGGT | 59.957 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
122 | 127 | 2.691011 | GAGAGCAACTGAGGTAGGTAGG | 59.309 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
123 | 128 | 2.356382 | CGAGAGCAACTGAGGTAGGTAG | 59.644 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
158 | 163 | 3.690745 | GCAAAGCTGCTGGTGGAT | 58.309 | 55.556 | 1.35 | 0.00 | 45.74 | 3.41 |
167 | 172 | 0.248458 | AACAAACGACGGCAAAGCTG | 60.248 | 50.000 | 0.00 | 0.00 | 41.29 | 4.24 |
171 | 176 | 0.247735 | CGTGAACAAACGACGGCAAA | 60.248 | 50.000 | 0.00 | 0.00 | 46.49 | 3.68 |
172 | 177 | 1.348938 | CGTGAACAAACGACGGCAA | 59.651 | 52.632 | 0.00 | 0.00 | 46.49 | 4.52 |
173 | 178 | 2.526993 | CCGTGAACAAACGACGGCA | 61.527 | 57.895 | 0.00 | 0.00 | 45.55 | 5.69 |
174 | 179 | 2.247267 | CCGTGAACAAACGACGGC | 59.753 | 61.111 | 0.00 | 0.00 | 45.55 | 5.68 |
176 | 181 | 2.154427 | GAGGCCGTGAACAAACGACG | 62.154 | 60.000 | 0.00 | 0.00 | 46.49 | 5.12 |
177 | 182 | 1.568025 | GAGGCCGTGAACAAACGAC | 59.432 | 57.895 | 0.00 | 0.00 | 46.49 | 4.34 |
178 | 183 | 1.952133 | CGAGGCCGTGAACAAACGA | 60.952 | 57.895 | 0.00 | 0.00 | 46.49 | 3.85 |
179 | 184 | 1.492319 | TTCGAGGCCGTGAACAAACG | 61.492 | 55.000 | 8.43 | 0.00 | 43.20 | 3.60 |
180 | 185 | 0.658897 | TTTCGAGGCCGTGAACAAAC | 59.341 | 50.000 | 11.64 | 0.00 | 37.05 | 2.93 |
202 | 207 | 2.953466 | ACGACGGCAAAGCTAATCTA | 57.047 | 45.000 | 0.00 | 0.00 | 0.00 | 1.98 |
203 | 208 | 2.094762 | AACGACGGCAAAGCTAATCT | 57.905 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
204 | 209 | 2.095919 | ACAAACGACGGCAAAGCTAATC | 60.096 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
205 | 210 | 1.877443 | ACAAACGACGGCAAAGCTAAT | 59.123 | 42.857 | 0.00 | 0.00 | 0.00 | 1.73 |
206 | 211 | 1.301423 | ACAAACGACGGCAAAGCTAA | 58.699 | 45.000 | 0.00 | 0.00 | 0.00 | 3.09 |
207 | 212 | 1.262151 | GAACAAACGACGGCAAAGCTA | 59.738 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
208 | 213 | 0.028902 | GAACAAACGACGGCAAAGCT | 59.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.74 |
209 | 214 | 0.248296 | TGAACAAACGACGGCAAAGC | 60.248 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
210 | 215 | 1.462791 | GTGAACAAACGACGGCAAAG | 58.537 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
211 | 216 | 0.247735 | CGTGAACAAACGACGGCAAA | 60.248 | 50.000 | 0.00 | 0.00 | 46.49 | 3.68 |
212 | 217 | 1.348938 | CGTGAACAAACGACGGCAA | 59.651 | 52.632 | 0.00 | 0.00 | 46.49 | 4.52 |
213 | 218 | 2.526993 | CCGTGAACAAACGACGGCA | 61.527 | 57.895 | 0.00 | 0.00 | 45.55 | 5.69 |
214 | 219 | 2.247267 | CCGTGAACAAACGACGGC | 59.753 | 61.111 | 0.00 | 0.00 | 45.55 | 5.68 |
216 | 221 | 2.154427 | GAGGCCGTGAACAAACGACG | 62.154 | 60.000 | 0.00 | 0.00 | 46.49 | 5.12 |
217 | 222 | 1.568025 | GAGGCCGTGAACAAACGAC | 59.432 | 57.895 | 0.00 | 0.00 | 46.49 | 4.34 |
218 | 223 | 1.952133 | CGAGGCCGTGAACAAACGA | 60.952 | 57.895 | 0.00 | 0.00 | 46.49 | 3.85 |
219 | 224 | 2.549282 | CGAGGCCGTGAACAAACG | 59.451 | 61.111 | 0.00 | 0.00 | 43.20 | 3.60 |
220 | 225 | 1.161563 | TTCCGAGGCCGTGAACAAAC | 61.162 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
221 | 226 | 0.882927 | CTTCCGAGGCCGTGAACAAA | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
222 | 227 | 1.301401 | CTTCCGAGGCCGTGAACAA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
223 | 228 | 2.342279 | CTTCCGAGGCCGTGAACA | 59.658 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
224 | 229 | 2.434359 | CCTTCCGAGGCCGTGAAC | 60.434 | 66.667 | 0.00 | 0.00 | 35.94 | 3.18 |
225 | 230 | 2.167398 | CTTCCTTCCGAGGCCGTGAA | 62.167 | 60.000 | 0.00 | 0.31 | 43.21 | 3.18 |
226 | 231 | 2.602267 | TTCCTTCCGAGGCCGTGA | 60.602 | 61.111 | 0.00 | 0.00 | 43.21 | 4.35 |
227 | 232 | 2.125512 | CTTCCTTCCGAGGCCGTG | 60.126 | 66.667 | 0.00 | 0.00 | 43.21 | 4.94 |
228 | 233 | 1.477685 | TTTCTTCCTTCCGAGGCCGT | 61.478 | 55.000 | 0.00 | 0.00 | 43.21 | 5.68 |
229 | 234 | 0.741221 | CTTTCTTCCTTCCGAGGCCG | 60.741 | 60.000 | 0.00 | 0.00 | 43.21 | 6.13 |
230 | 235 | 0.613777 | TCTTTCTTCCTTCCGAGGCC | 59.386 | 55.000 | 0.00 | 0.00 | 43.21 | 5.19 |
231 | 236 | 2.474410 | TTCTTTCTTCCTTCCGAGGC | 57.526 | 50.000 | 0.00 | 0.00 | 43.21 | 4.70 |
232 | 237 | 4.479786 | AGATTCTTTCTTCCTTCCGAGG | 57.520 | 45.455 | 0.00 | 0.00 | 45.02 | 4.63 |
233 | 238 | 6.091986 | CAGAAAGATTCTTTCTTCCTTCCGAG | 59.908 | 42.308 | 30.28 | 16.71 | 44.09 | 4.63 |
234 | 239 | 5.934625 | CAGAAAGATTCTTTCTTCCTTCCGA | 59.065 | 40.000 | 30.28 | 0.00 | 44.09 | 4.55 |
235 | 240 | 5.703130 | ACAGAAAGATTCTTTCTTCCTTCCG | 59.297 | 40.000 | 30.28 | 21.60 | 44.09 | 4.30 |
236 | 241 | 8.622948 | TTACAGAAAGATTCTTTCTTCCTTCC | 57.377 | 34.615 | 30.28 | 9.69 | 44.09 | 3.46 |
237 | 242 | 9.885934 | GTTTACAGAAAGATTCTTTCTTCCTTC | 57.114 | 33.333 | 30.28 | 19.60 | 44.09 | 3.46 |
238 | 243 | 8.851145 | GGTTTACAGAAAGATTCTTTCTTCCTT | 58.149 | 33.333 | 30.28 | 19.80 | 44.09 | 3.36 |
239 | 244 | 7.998964 | TGGTTTACAGAAAGATTCTTTCTTCCT | 59.001 | 33.333 | 30.28 | 20.39 | 44.09 | 3.36 |
240 | 245 | 8.166422 | TGGTTTACAGAAAGATTCTTTCTTCC | 57.834 | 34.615 | 30.28 | 24.99 | 44.09 | 3.46 |
283 | 288 | 3.149196 | GTGGATGTGGAGAAAGCTTCAA | 58.851 | 45.455 | 0.00 | 0.00 | 29.44 | 2.69 |
288 | 293 | 2.352127 | GCTTTGTGGATGTGGAGAAAGC | 60.352 | 50.000 | 0.00 | 0.00 | 40.10 | 3.51 |
293 | 298 | 3.553508 | CCTTTTGCTTTGTGGATGTGGAG | 60.554 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
294 | 299 | 2.364970 | CCTTTTGCTTTGTGGATGTGGA | 59.635 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
295 | 300 | 2.102925 | ACCTTTTGCTTTGTGGATGTGG | 59.897 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
296 | 301 | 3.457610 | ACCTTTTGCTTTGTGGATGTG | 57.542 | 42.857 | 0.00 | 0.00 | 0.00 | 3.21 |
297 | 302 | 4.469657 | TCTACCTTTTGCTTTGTGGATGT | 58.530 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
298 | 303 | 4.520492 | ACTCTACCTTTTGCTTTGTGGATG | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
299 | 304 | 4.729868 | ACTCTACCTTTTGCTTTGTGGAT | 58.270 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
317 | 322 | 1.893786 | CCTCGGTGCTGCTTACTCT | 59.106 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
320 | 325 | 2.047274 | TGCCTCGGTGCTGCTTAC | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 2.34 |
321 | 326 | 2.047274 | GTGCCTCGGTGCTGCTTA | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 3.09 |
368 | 373 | 1.118356 | AGCTGGGCCGAGGATTAGAG | 61.118 | 60.000 | 17.33 | 0.00 | 0.00 | 2.43 |
448 | 453 | 3.665675 | ATCTTGGCCGACGGTGAGC | 62.666 | 63.158 | 16.73 | 0.00 | 0.00 | 4.26 |
460 | 465 | 0.527817 | GTACGTGGCCTCGATCTTGG | 60.528 | 60.000 | 32.11 | 3.14 | 34.70 | 3.61 |
485 | 490 | 3.626924 | AGGAGCACCACCACGACC | 61.627 | 66.667 | 2.07 | 0.00 | 38.94 | 4.79 |
503 | 508 | 3.116531 | GGGTACGGTTCAGCACGC | 61.117 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
513 | 518 | 1.812507 | GGCTAAGCAACGGGTACGG | 60.813 | 63.158 | 0.00 | 0.00 | 46.48 | 4.02 |
515 | 520 | 2.458610 | GCGGCTAAGCAACGGGTAC | 61.459 | 63.158 | 0.00 | 0.00 | 37.05 | 3.34 |
516 | 521 | 2.125431 | GCGGCTAAGCAACGGGTA | 60.125 | 61.111 | 0.00 | 0.00 | 37.05 | 3.69 |
543 | 548 | 0.240945 | CGCACCACTTTGATCAACCC | 59.759 | 55.000 | 7.89 | 0.00 | 0.00 | 4.11 |
544 | 549 | 0.951558 | ACGCACCACTTTGATCAACC | 59.048 | 50.000 | 7.89 | 0.00 | 0.00 | 3.77 |
545 | 550 | 1.333619 | ACACGCACCACTTTGATCAAC | 59.666 | 47.619 | 7.89 | 0.00 | 0.00 | 3.18 |
546 | 551 | 1.333308 | CACACGCACCACTTTGATCAA | 59.667 | 47.619 | 3.38 | 3.38 | 0.00 | 2.57 |
561 | 3455 | 2.098871 | CGTCCATGCATGCACACG | 59.901 | 61.111 | 25.37 | 25.40 | 0.00 | 4.49 |
571 | 3465 | 2.173669 | GTCGTGCCATCCGTCCATG | 61.174 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
572 | 3466 | 2.186903 | GTCGTGCCATCCGTCCAT | 59.813 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
573 | 3467 | 4.077184 | GGTCGTGCCATCCGTCCA | 62.077 | 66.667 | 0.00 | 0.00 | 37.17 | 4.02 |
574 | 3468 | 4.832608 | GGGTCGTGCCATCCGTCC | 62.833 | 72.222 | 1.70 | 0.00 | 39.65 | 4.79 |
654 | 3563 | 0.238553 | GAGGTGGCGAAAAAGTGCTC | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
655 | 3564 | 1.507141 | CGAGGTGGCGAAAAAGTGCT | 61.507 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
656 | 3565 | 1.082104 | CGAGGTGGCGAAAAAGTGC | 60.082 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
659 | 3568 | 2.561373 | GGCGAGGTGGCGAAAAAG | 59.439 | 61.111 | 0.00 | 0.00 | 0.00 | 2.27 |
708 | 3621 | 4.460873 | CTTTCGCCGCGCCTTTCC | 62.461 | 66.667 | 8.21 | 0.00 | 0.00 | 3.13 |
772 | 3706 | 4.927782 | TGAGGTGGTGGTGCGTGC | 62.928 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
773 | 3707 | 2.972505 | GTGAGGTGGTGGTGCGTG | 60.973 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
841 | 3780 | 0.745128 | TGGGTTTTATAGGTGGCGCG | 60.745 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
860 | 3802 | 4.677151 | GAGGAGGTGGGGTGGGGT | 62.677 | 72.222 | 0.00 | 0.00 | 0.00 | 4.95 |
865 | 3807 | 2.876858 | AGGAGGAGGAGGTGGGGT | 60.877 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
867 | 3809 | 0.762461 | GATGAGGAGGAGGAGGTGGG | 60.762 | 65.000 | 0.00 | 0.00 | 0.00 | 4.61 |
898 | 3840 | 3.792047 | CGCGCTGTGTGGTGATGG | 61.792 | 66.667 | 5.56 | 0.00 | 0.00 | 3.51 |
918 | 3860 | 2.111669 | TGTGTGCTGGACTGCTGG | 59.888 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
919 | 3861 | 1.227764 | AGTGTGTGCTGGACTGCTG | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
920 | 3862 | 1.227764 | CAGTGTGTGCTGGACTGCT | 60.228 | 57.895 | 0.00 | 0.00 | 31.31 | 4.24 |
921 | 3863 | 3.337619 | CAGTGTGTGCTGGACTGC | 58.662 | 61.111 | 0.00 | 0.00 | 31.31 | 4.40 |
999 | 3968 | 1.415659 | CAGTCCAGGACCATCTCCATC | 59.584 | 57.143 | 16.72 | 0.00 | 42.46 | 3.51 |
1536 | 4511 | 1.448540 | CGACTTGAGCCGCATCCTT | 60.449 | 57.895 | 0.00 | 0.00 | 0.00 | 3.36 |
2046 | 5027 | 4.147449 | CTGATGGACTCGCGCCCA | 62.147 | 66.667 | 15.06 | 15.06 | 36.79 | 5.36 |
2343 | 5331 | 3.493830 | GATGTCGGCCGGCGTGATA | 62.494 | 63.158 | 32.38 | 19.20 | 0.00 | 2.15 |
2409 | 5397 | 4.116328 | TCGCCGACGAGCCTCTTG | 62.116 | 66.667 | 0.00 | 0.00 | 45.12 | 3.02 |
2479 | 5467 | 3.705579 | CACTCCATCTTCTCCTCTGTCAT | 59.294 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
2505 | 5493 | 5.936956 | GGTCAATCTCTGTGTCTTTGATCTT | 59.063 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2512 | 5500 | 3.244353 | CCACTGGTCAATCTCTGTGTCTT | 60.244 | 47.826 | 0.00 | 0.00 | 33.07 | 3.01 |
2533 | 5521 | 1.866853 | GCTGCAACAAGCCACCTACC | 61.867 | 60.000 | 0.00 | 0.00 | 44.83 | 3.18 |
2559 | 5547 | 6.189859 | AGTTAATTTCATCTGCAATCCTCCA | 58.810 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2585 | 5573 | 6.240894 | TGGTGCTGATATCAAGGGATTATTC | 58.759 | 40.000 | 6.90 | 0.00 | 34.89 | 1.75 |
2592 | 5580 | 3.672808 | GATCTGGTGCTGATATCAAGGG | 58.327 | 50.000 | 6.90 | 0.00 | 0.00 | 3.95 |
2759 | 5760 | 8.166422 | ACAAAAGACGGAAGAAACTTTATGAT | 57.834 | 30.769 | 0.00 | 0.00 | 34.49 | 2.45 |
2863 | 5933 | 3.482923 | CGATCAACATTTTGTACCGACCG | 60.483 | 47.826 | 0.00 | 0.00 | 34.02 | 4.79 |
2908 | 5978 | 5.163642 | ACGTACTGGTCAATCTCAGTATCAC | 60.164 | 44.000 | 6.49 | 0.00 | 44.86 | 3.06 |
2936 | 6111 | 8.950208 | ATACTGAAGTTATTAGTTCCTTCTGC | 57.050 | 34.615 | 0.00 | 0.00 | 36.76 | 4.26 |
2939 | 6114 | 9.886132 | TGGAATACTGAAGTTATTAGTTCCTTC | 57.114 | 33.333 | 0.00 | 0.00 | 33.55 | 3.46 |
2941 | 6116 | 9.838339 | CATGGAATACTGAAGTTATTAGTTCCT | 57.162 | 33.333 | 0.00 | 0.00 | 33.55 | 3.36 |
2943 | 6118 | 9.614792 | ACCATGGAATACTGAAGTTATTAGTTC | 57.385 | 33.333 | 21.47 | 0.00 | 34.82 | 3.01 |
2964 | 6165 | 3.121738 | TCTGATGCAGCAGATACCATG | 57.878 | 47.619 | 29.83 | 3.75 | 39.84 | 3.66 |
2976 | 6177 | 3.891366 | TCGACCTATCTGAATCTGATGCA | 59.109 | 43.478 | 12.09 | 0.00 | 0.00 | 3.96 |
2994 | 7116 | 7.585867 | ACACATATGTCACTCTACATATCGAC | 58.414 | 38.462 | 5.07 | 0.00 | 45.61 | 4.20 |
3011 | 7133 | 5.495502 | CACATGATGACACGAACACATATG | 58.504 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
3012 | 7134 | 4.571984 | CCACATGATGACACGAACACATAT | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
3015 | 7137 | 2.142319 | CCACATGATGACACGAACACA | 58.858 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
3044 | 7173 | 6.743575 | ACAAAAGGAAGAATAGTTCGATGG | 57.256 | 37.500 | 0.00 | 0.00 | 34.02 | 3.51 |
3074 | 7203 | 2.205022 | AGTACACAGGCGTACCACTA | 57.795 | 50.000 | 0.00 | 0.00 | 42.29 | 2.74 |
3075 | 7204 | 1.335145 | AAGTACACAGGCGTACCACT | 58.665 | 50.000 | 0.00 | 0.00 | 42.29 | 4.00 |
3087 | 7216 | 6.291377 | ACATCCATCCATCATGTAAGTACAC | 58.709 | 40.000 | 0.00 | 0.00 | 39.30 | 2.90 |
3095 | 7224 | 8.316946 | CACTATACTAACATCCATCCATCATGT | 58.683 | 37.037 | 0.00 | 0.00 | 31.90 | 3.21 |
3114 | 7243 | 7.214381 | TGTCATGCCTGGTTAATACACTATAC | 58.786 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
3148 | 7277 | 4.815533 | ACTAGTGCTGACTGTCATCATT | 57.184 | 40.909 | 16.32 | 14.56 | 33.21 | 2.57 |
3149 | 7278 | 5.196695 | TCTACTAGTGCTGACTGTCATCAT | 58.803 | 41.667 | 16.32 | 8.96 | 33.21 | 2.45 |
3150 | 7279 | 4.589908 | TCTACTAGTGCTGACTGTCATCA | 58.410 | 43.478 | 11.45 | 10.70 | 33.21 | 3.07 |
3151 | 7280 | 5.568685 | TTCTACTAGTGCTGACTGTCATC | 57.431 | 43.478 | 11.45 | 7.87 | 33.21 | 2.92 |
3152 | 7281 | 5.478679 | ACTTTCTACTAGTGCTGACTGTCAT | 59.521 | 40.000 | 11.45 | 0.00 | 33.21 | 3.06 |
3158 | 7287 | 6.366604 | GGAAGAAACTTTCTACTAGTGCTGAC | 59.633 | 42.308 | 5.39 | 0.00 | 39.61 | 3.51 |
3224 | 7353 | 7.703298 | AAATTTTGACATCAATGATATGCGG | 57.297 | 32.000 | 0.00 | 0.00 | 35.55 | 5.69 |
3261 | 7390 | 1.027357 | ATCGCCATGCCTGAACAATC | 58.973 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3322 | 7451 | 5.818136 | AAGGCACGACGTATACTACTTTA | 57.182 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
3327 | 7456 | 3.016031 | TGGAAAGGCACGACGTATACTA | 58.984 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
3350 | 7479 | 4.218852 | TGGCTTCCCCGTATTAAAAACAAG | 59.781 | 41.667 | 0.00 | 0.00 | 35.87 | 3.16 |
3359 | 7488 | 0.034477 | CCAAGTGGCTTCCCCGTATT | 60.034 | 55.000 | 0.00 | 0.00 | 35.87 | 1.89 |
3360 | 7489 | 1.607612 | CCAAGTGGCTTCCCCGTAT | 59.392 | 57.895 | 0.00 | 0.00 | 35.87 | 3.06 |
3388 | 7518 | 5.031066 | TGTTGTAACTCTGCTAAACTGGT | 57.969 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
3390 | 7520 | 7.598869 | TGTAGATGTTGTAACTCTGCTAAACTG | 59.401 | 37.037 | 10.76 | 0.00 | 0.00 | 3.16 |
3407 | 7537 | 2.419324 | GAGACGTCGGACTGTAGATGTT | 59.581 | 50.000 | 10.46 | 0.00 | 36.81 | 2.71 |
3408 | 7538 | 2.008329 | GAGACGTCGGACTGTAGATGT | 58.992 | 52.381 | 10.46 | 9.46 | 39.10 | 3.06 |
3409 | 7539 | 2.007608 | TGAGACGTCGGACTGTAGATG | 58.992 | 52.381 | 10.46 | 4.15 | 0.00 | 2.90 |
3410 | 7540 | 2.398252 | TGAGACGTCGGACTGTAGAT | 57.602 | 50.000 | 10.46 | 0.00 | 0.00 | 1.98 |
3411 | 7541 | 2.174363 | TTGAGACGTCGGACTGTAGA | 57.826 | 50.000 | 10.46 | 0.00 | 0.00 | 2.59 |
3412 | 7542 | 2.582687 | GTTTGAGACGTCGGACTGTAG | 58.417 | 52.381 | 10.46 | 0.00 | 0.00 | 2.74 |
3413 | 7543 | 1.267806 | GGTTTGAGACGTCGGACTGTA | 59.732 | 52.381 | 10.46 | 0.00 | 0.00 | 2.74 |
3414 | 7544 | 0.031721 | GGTTTGAGACGTCGGACTGT | 59.968 | 55.000 | 10.46 | 5.99 | 0.00 | 3.55 |
3415 | 7545 | 0.031585 | TGGTTTGAGACGTCGGACTG | 59.968 | 55.000 | 10.46 | 2.73 | 0.00 | 3.51 |
3416 | 7546 | 0.966920 | ATGGTTTGAGACGTCGGACT | 59.033 | 50.000 | 10.46 | 0.00 | 0.00 | 3.85 |
3417 | 7547 | 1.067776 | AGATGGTTTGAGACGTCGGAC | 60.068 | 52.381 | 10.46 | 7.43 | 0.00 | 4.79 |
3418 | 7548 | 1.201647 | GAGATGGTTTGAGACGTCGGA | 59.798 | 52.381 | 10.46 | 0.00 | 0.00 | 4.55 |
3419 | 7549 | 1.202582 | AGAGATGGTTTGAGACGTCGG | 59.797 | 52.381 | 10.46 | 0.00 | 0.00 | 4.79 |
3420 | 7550 | 2.638556 | AGAGATGGTTTGAGACGTCG | 57.361 | 50.000 | 10.46 | 0.00 | 0.00 | 5.12 |
3421 | 7551 | 6.561614 | TGTATAAGAGATGGTTTGAGACGTC | 58.438 | 40.000 | 7.70 | 7.70 | 0.00 | 4.34 |
3422 | 7552 | 6.525578 | TGTATAAGAGATGGTTTGAGACGT | 57.474 | 37.500 | 0.00 | 0.00 | 0.00 | 4.34 |
3423 | 7553 | 7.706607 | TGAATGTATAAGAGATGGTTTGAGACG | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
3424 | 7554 | 8.821894 | GTGAATGTATAAGAGATGGTTTGAGAC | 58.178 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
3425 | 7555 | 7.706607 | CGTGAATGTATAAGAGATGGTTTGAGA | 59.293 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
3426 | 7556 | 7.042456 | CCGTGAATGTATAAGAGATGGTTTGAG | 60.042 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
3427 | 7557 | 6.761242 | CCGTGAATGTATAAGAGATGGTTTGA | 59.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
3428 | 7558 | 6.761242 | TCCGTGAATGTATAAGAGATGGTTTG | 59.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.93 |
3429 | 7559 | 6.884832 | TCCGTGAATGTATAAGAGATGGTTT | 58.115 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3430 | 7560 | 6.479972 | TCCGTGAATGTATAAGAGATGGTT | 57.520 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
3431 | 7561 | 6.459066 | CATCCGTGAATGTATAAGAGATGGT | 58.541 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3432 | 7562 | 5.349817 | GCATCCGTGAATGTATAAGAGATGG | 59.650 | 44.000 | 0.00 | 0.00 | 31.46 | 3.51 |
3433 | 7563 | 5.061435 | CGCATCCGTGAATGTATAAGAGATG | 59.939 | 44.000 | 0.00 | 0.00 | 33.42 | 2.90 |
3434 | 7564 | 5.164233 | CGCATCCGTGAATGTATAAGAGAT | 58.836 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
3435 | 7565 | 4.546570 | CGCATCCGTGAATGTATAAGAGA | 58.453 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
3436 | 7566 | 4.893036 | CGCATCCGTGAATGTATAAGAG | 57.107 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
3451 | 7581 | 1.153449 | TCATTGACCGGACGCATCC | 60.153 | 57.895 | 9.46 | 0.00 | 42.28 | 3.51 |
3452 | 7582 | 1.429148 | GGTCATTGACCGGACGCATC | 61.429 | 60.000 | 19.65 | 0.00 | 43.14 | 3.91 |
3453 | 7583 | 1.449601 | GGTCATTGACCGGACGCAT | 60.450 | 57.895 | 19.65 | 0.00 | 43.14 | 4.73 |
3454 | 7584 | 2.047655 | GGTCATTGACCGGACGCA | 60.048 | 61.111 | 19.65 | 0.00 | 43.14 | 5.24 |
3462 | 7592 | 6.214191 | TCTCTCTATTGTCTGGTCATTGAC | 57.786 | 41.667 | 8.34 | 8.34 | 0.00 | 3.18 |
3463 | 7593 | 6.857437 | TTCTCTCTATTGTCTGGTCATTGA | 57.143 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3464 | 7594 | 7.912056 | TTTTCTCTCTATTGTCTGGTCATTG | 57.088 | 36.000 | 0.00 | 0.00 | 0.00 | 2.82 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.