Multiple sequence alignment - TraesCS7A01G423300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G423300 chr7A 100.000 3846 0 0 1 3846 615377407 615373562 0.000000e+00 7103.0
1 TraesCS7A01G423300 chr7A 95.984 772 27 3 3077 3846 6653061 6652292 0.000000e+00 1251.0
2 TraesCS7A01G423300 chr7A 87.879 264 30 2 455 716 176271805 176272068 3.730000e-80 309.0
3 TraesCS7A01G423300 chr7A 86.694 248 31 2 473 718 693403243 693403490 1.360000e-69 274.0
4 TraesCS7A01G423300 chr7B 93.797 2241 108 14 769 2982 575388594 575386358 0.000000e+00 3339.0
5 TraesCS7A01G423300 chr7B 91.670 2221 121 17 718 2900 577143467 577141273 0.000000e+00 3018.0
6 TraesCS7A01G423300 chr7B 96.842 95 3 0 2980 3074 535500998 535501092 3.980000e-35 159.0
7 TraesCS7A01G423300 chr7B 92.045 88 7 0 2896 2983 577140098 577140011 1.450000e-24 124.0
8 TraesCS7A01G423300 chr7B 87.500 56 7 0 324 379 112961606 112961661 8.920000e-07 65.8
9 TraesCS7A01G423300 chr1D 79.686 1974 298 57 972 2916 482896039 482897938 0.000000e+00 1328.0
10 TraesCS7A01G423300 chr1D 73.489 1373 296 50 1307 2636 200094819 200093472 1.260000e-124 457.0
11 TraesCS7A01G423300 chr1D 90.566 53 4 1 330 381 430477713 430477661 6.890000e-08 69.4
12 TraesCS7A01G423300 chr5A 96.124 774 27 2 3073 3844 527355741 527356513 0.000000e+00 1260.0
13 TraesCS7A01G423300 chr5A 95.866 774 29 2 3075 3846 294867282 294868054 0.000000e+00 1249.0
14 TraesCS7A01G423300 chr5A 95.742 775 28 2 3074 3846 573654374 573653603 0.000000e+00 1243.0
15 TraesCS7A01G423300 chr5A 74.907 1347 284 44 1300 2615 546762612 546763935 2.010000e-157 566.0
16 TraesCS7A01G423300 chr5A 78.365 795 145 18 1422 2197 676950880 676950094 1.240000e-134 490.0
17 TraesCS7A01G423300 chr5A 77.220 777 157 16 1873 2636 561177982 561177213 1.640000e-118 436.0
18 TraesCS7A01G423300 chr5A 86.312 263 34 2 456 716 410800620 410800882 6.290000e-73 285.0
19 TraesCS7A01G423300 chr5A 81.818 319 52 5 1873 2188 546864387 546864072 2.950000e-66 263.0
20 TraesCS7A01G423300 chr5A 84.848 264 36 4 456 716 631470293 631470031 2.950000e-66 263.0
21 TraesCS7A01G423300 chr5A 96.842 95 3 0 2980 3074 520463266 520463360 3.980000e-35 159.0
22 TraesCS7A01G423300 chr2B 95.984 772 28 3 3077 3846 726123968 726124738 0.000000e+00 1251.0
23 TraesCS7A01G423300 chr2B 73.273 1332 302 38 1311 2614 709992034 709993339 4.560000e-119 438.0
24 TraesCS7A01G423300 chr2B 76.609 808 147 30 1844 2624 678388352 678387560 1.290000e-109 407.0
25 TraesCS7A01G423300 chr4A 95.731 773 29 3 3076 3846 94991636 94992406 0.000000e+00 1242.0
26 TraesCS7A01G423300 chr4A 98.925 93 1 0 2982 3074 278441212 278441120 2.380000e-37 167.0
27 TraesCS7A01G423300 chr4A 87.500 56 7 0 326 381 437609459 437609404 8.920000e-07 65.8
28 TraesCS7A01G423300 chr1B 81.060 1642 231 36 1000 2624 671225070 671226648 0.000000e+00 1236.0
29 TraesCS7A01G423300 chr1B 97.826 92 2 0 2983 3074 49929303 49929394 3.980000e-35 159.0
30 TraesCS7A01G423300 chr1B 97.297 37 1 0 345 381 584364310 584364274 3.210000e-06 63.9
31 TraesCS7A01G423300 chr1A 95.490 776 32 3 3073 3846 499619257 499618483 0.000000e+00 1236.0
32 TraesCS7A01G423300 chr1A 95.361 776 32 3 3073 3846 477036146 477036919 0.000000e+00 1230.0
33 TraesCS7A01G423300 chr1A 82.766 940 118 23 1015 1939 579288963 579288053 0.000000e+00 798.0
34 TraesCS7A01G423300 chr1A 85.036 274 34 6 456 726 447735737 447736006 4.900000e-69 272.0
35 TraesCS7A01G423300 chr1A 85.227 264 37 2 456 717 85360751 85360488 1.760000e-68 270.0
36 TraesCS7A01G423300 chr1A 80.921 304 58 0 1984 2287 579288052 579287749 1.380000e-59 241.0
37 TraesCS7A01G423300 chr6A 95.361 776 33 2 3073 3846 196181928 196181154 0.000000e+00 1230.0
38 TraesCS7A01G423300 chr6A 98.750 80 1 0 2995 3074 212309303 212309382 4.010000e-30 143.0
39 TraesCS7A01G423300 chr6A 97.778 45 1 0 3030 3074 72479442 72479486 1.150000e-10 78.7
40 TraesCS7A01G423300 chr5D 74.907 1351 289 39 1300 2621 431788895 431787566 4.310000e-159 571.0
41 TraesCS7A01G423300 chr5D 97.938 97 2 0 2978 3074 540234758 540234662 6.610000e-38 169.0
42 TraesCS7A01G423300 chr5D 90.385 52 5 0 330 381 507753515 507753566 6.890000e-08 69.4
43 TraesCS7A01G423300 chr5D 86.207 58 8 0 324 381 537572227 537572284 3.210000e-06 63.9
44 TraesCS7A01G423300 chr4B 78.742 795 146 18 1422 2199 637723971 637723183 9.530000e-141 510.0
45 TraesCS7A01G423300 chr5B 75.182 826 170 30 1805 2615 522854699 522855504 1.310000e-94 357.0
46 TraesCS7A01G423300 chr2A 79.493 434 75 11 1844 2270 706210059 706209633 2.910000e-76 296.0
47 TraesCS7A01G423300 chr2A 87.931 58 5 2 326 381 762665110 762665053 2.480000e-07 67.6
48 TraesCS7A01G423300 chr3D 87.500 248 28 3 473 718 429822 429576 2.260000e-72 283.0
49 TraesCS7A01G423300 chr6D 85.660 265 36 2 454 716 97685039 97684775 1.050000e-70 278.0
50 TraesCS7A01G423300 chr6D 84.926 272 37 4 448 716 27318263 27317993 4.900000e-69 272.0
51 TraesCS7A01G423300 chr4D 79.420 345 63 5 1414 1753 497158285 497157944 1.790000e-58 237.0
52 TraesCS7A01G423300 chr6B 87.097 62 3 5 345 406 66387957 66388013 8.920000e-07 65.8
53 TraesCS7A01G423300 chr2D 86.207 58 8 0 324 381 532387624 532387681 3.210000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G423300 chr7A 615373562 615377407 3845 True 7103.0 7103 100.0000 1 3846 1 chr7A.!!$R2 3845
1 TraesCS7A01G423300 chr7A 6652292 6653061 769 True 1251.0 1251 95.9840 3077 3846 1 chr7A.!!$R1 769
2 TraesCS7A01G423300 chr7B 575386358 575388594 2236 True 3339.0 3339 93.7970 769 2982 1 chr7B.!!$R1 2213
3 TraesCS7A01G423300 chr7B 577140011 577143467 3456 True 1571.0 3018 91.8575 718 2983 2 chr7B.!!$R2 2265
4 TraesCS7A01G423300 chr1D 482896039 482897938 1899 False 1328.0 1328 79.6860 972 2916 1 chr1D.!!$F1 1944
5 TraesCS7A01G423300 chr1D 200093472 200094819 1347 True 457.0 457 73.4890 1307 2636 1 chr1D.!!$R1 1329
6 TraesCS7A01G423300 chr5A 527355741 527356513 772 False 1260.0 1260 96.1240 3073 3844 1 chr5A.!!$F4 771
7 TraesCS7A01G423300 chr5A 294867282 294868054 772 False 1249.0 1249 95.8660 3075 3846 1 chr5A.!!$F1 771
8 TraesCS7A01G423300 chr5A 573653603 573654374 771 True 1243.0 1243 95.7420 3074 3846 1 chr5A.!!$R3 772
9 TraesCS7A01G423300 chr5A 546762612 546763935 1323 False 566.0 566 74.9070 1300 2615 1 chr5A.!!$F5 1315
10 TraesCS7A01G423300 chr5A 676950094 676950880 786 True 490.0 490 78.3650 1422 2197 1 chr5A.!!$R5 775
11 TraesCS7A01G423300 chr5A 561177213 561177982 769 True 436.0 436 77.2200 1873 2636 1 chr5A.!!$R2 763
12 TraesCS7A01G423300 chr2B 726123968 726124738 770 False 1251.0 1251 95.9840 3077 3846 1 chr2B.!!$F2 769
13 TraesCS7A01G423300 chr2B 709992034 709993339 1305 False 438.0 438 73.2730 1311 2614 1 chr2B.!!$F1 1303
14 TraesCS7A01G423300 chr2B 678387560 678388352 792 True 407.0 407 76.6090 1844 2624 1 chr2B.!!$R1 780
15 TraesCS7A01G423300 chr4A 94991636 94992406 770 False 1242.0 1242 95.7310 3076 3846 1 chr4A.!!$F1 770
16 TraesCS7A01G423300 chr1B 671225070 671226648 1578 False 1236.0 1236 81.0600 1000 2624 1 chr1B.!!$F2 1624
17 TraesCS7A01G423300 chr1A 499618483 499619257 774 True 1236.0 1236 95.4900 3073 3846 1 chr1A.!!$R2 773
18 TraesCS7A01G423300 chr1A 477036146 477036919 773 False 1230.0 1230 95.3610 3073 3846 1 chr1A.!!$F2 773
19 TraesCS7A01G423300 chr1A 579287749 579288963 1214 True 519.5 798 81.8435 1015 2287 2 chr1A.!!$R3 1272
20 TraesCS7A01G423300 chr6A 196181154 196181928 774 True 1230.0 1230 95.3610 3073 3846 1 chr6A.!!$R1 773
21 TraesCS7A01G423300 chr5D 431787566 431788895 1329 True 571.0 571 74.9070 1300 2621 1 chr5D.!!$R1 1321
22 TraesCS7A01G423300 chr4B 637723183 637723971 788 True 510.0 510 78.7420 1422 2199 1 chr4B.!!$R1 777
23 TraesCS7A01G423300 chr5B 522854699 522855504 805 False 357.0 357 75.1820 1805 2615 1 chr5B.!!$F1 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.038067 TCTCGACGCGGAAAATCCAA 60.038 50.000 12.47 0.0 35.91 3.53 F
187 188 0.094730 CTCGACGCGGAAAATCCAAC 59.905 55.000 12.47 0.0 35.91 3.77 F
188 189 0.320073 TCGACGCGGAAAATCCAACT 60.320 50.000 12.47 0.0 35.91 3.16 F
815 818 0.601057 ATTTTTCGCCTTGTTCCCGG 59.399 50.000 0.00 0.0 0.00 5.73 F
2054 2145 1.965930 GTGACGTGCTTGCATCCCA 60.966 57.895 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1103 1117 4.519437 CGCTGGCGGAGATGCAGA 62.519 66.667 7.12 0.0 36.28 4.26 R
2218 2309 1.963338 GCAGCTCGCTTTGACCAGT 60.963 57.895 1.48 0.0 37.77 4.00 R
2242 2341 2.125952 CCTGTCGCAGCATCACGA 60.126 61.111 0.00 0.0 35.62 4.35 R
2663 2777 1.439353 CGGGCGCATAAAGTCTGCAT 61.439 55.000 10.83 0.0 39.64 3.96 R
3193 4495 1.377987 ACACCACACACGCCTTGTT 60.378 52.632 0.00 0.0 35.67 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.769608 TGAACGAGACATGTATTATCATGC 57.230 37.500 0.00 1.29 46.15 4.06
30 31 6.279882 TGAACGAGACATGTATTATCATGCA 58.720 36.000 0.00 0.00 46.15 3.96
31 32 6.760770 TGAACGAGACATGTATTATCATGCAA 59.239 34.615 0.00 0.00 46.15 4.08
32 33 7.279758 TGAACGAGACATGTATTATCATGCAAA 59.720 33.333 0.00 0.00 46.15 3.68
33 34 7.552458 ACGAGACATGTATTATCATGCAAAA 57.448 32.000 0.00 0.00 46.15 2.44
34 35 7.984391 ACGAGACATGTATTATCATGCAAAAA 58.016 30.769 0.00 0.00 46.15 1.94
55 56 7.406799 AAAAAGGCACAGATTTATTTTCGTG 57.593 32.000 0.00 0.00 0.00 4.35
56 57 5.957842 AAGGCACAGATTTATTTTCGTGA 57.042 34.783 0.00 0.00 0.00 4.35
57 58 5.551760 AGGCACAGATTTATTTTCGTGAG 57.448 39.130 0.00 0.00 0.00 3.51
58 59 5.245531 AGGCACAGATTTATTTTCGTGAGA 58.754 37.500 0.00 0.00 39.20 3.27
59 60 5.352569 AGGCACAGATTTATTTTCGTGAGAG 59.647 40.000 0.00 0.00 43.69 3.20
60 61 5.447818 GGCACAGATTTATTTTCGTGAGAGG 60.448 44.000 0.00 0.00 43.69 3.69
61 62 5.563842 CACAGATTTATTTTCGTGAGAGGC 58.436 41.667 0.00 0.00 43.69 4.70
62 63 5.122239 CACAGATTTATTTTCGTGAGAGGCA 59.878 40.000 0.00 0.00 43.69 4.75
63 64 5.122396 ACAGATTTATTTTCGTGAGAGGCAC 59.878 40.000 0.00 0.00 43.69 5.01
79 80 2.010145 GCACAGTTATGCCTCTTCGA 57.990 50.000 0.00 0.00 39.86 3.71
80 81 1.929836 GCACAGTTATGCCTCTTCGAG 59.070 52.381 0.00 0.00 39.86 4.04
81 82 2.417379 GCACAGTTATGCCTCTTCGAGA 60.417 50.000 0.00 0.00 39.86 4.04
82 83 3.849911 CACAGTTATGCCTCTTCGAGAA 58.150 45.455 0.00 0.00 0.00 2.87
83 84 4.245660 CACAGTTATGCCTCTTCGAGAAA 58.754 43.478 0.00 0.00 0.00 2.52
84 85 4.328440 CACAGTTATGCCTCTTCGAGAAAG 59.672 45.833 0.00 0.00 36.22 2.62
85 86 3.868077 CAGTTATGCCTCTTCGAGAAAGG 59.132 47.826 5.66 5.66 35.54 3.11
86 87 3.769844 AGTTATGCCTCTTCGAGAAAGGA 59.230 43.478 12.50 1.06 35.54 3.36
87 88 2.682155 ATGCCTCTTCGAGAAAGGAC 57.318 50.000 12.50 5.92 35.54 3.85
88 89 1.338107 TGCCTCTTCGAGAAAGGACA 58.662 50.000 12.50 7.89 35.54 4.02
89 90 1.691976 TGCCTCTTCGAGAAAGGACAA 59.308 47.619 12.50 0.00 35.54 3.18
90 91 2.289072 TGCCTCTTCGAGAAAGGACAAG 60.289 50.000 12.50 0.00 35.54 3.16
91 92 2.028930 GCCTCTTCGAGAAAGGACAAGA 60.029 50.000 12.50 0.00 35.54 3.02
92 93 3.555168 GCCTCTTCGAGAAAGGACAAGAA 60.555 47.826 12.50 0.00 35.54 2.52
93 94 4.632153 CCTCTTCGAGAAAGGACAAGAAA 58.368 43.478 4.29 0.00 35.54 2.52
94 95 5.057149 CCTCTTCGAGAAAGGACAAGAAAA 58.943 41.667 4.29 0.00 35.54 2.29
95 96 5.527582 CCTCTTCGAGAAAGGACAAGAAAAA 59.472 40.000 4.29 0.00 35.54 1.94
96 97 6.205658 CCTCTTCGAGAAAGGACAAGAAAAAT 59.794 38.462 4.29 0.00 35.54 1.82
97 98 7.255277 CCTCTTCGAGAAAGGACAAGAAAAATT 60.255 37.037 4.29 0.00 35.54 1.82
98 99 8.671384 TCTTCGAGAAAGGACAAGAAAAATTA 57.329 30.769 0.00 0.00 35.54 1.40
99 100 8.557029 TCTTCGAGAAAGGACAAGAAAAATTAC 58.443 33.333 0.00 0.00 35.54 1.89
100 101 8.446599 TTCGAGAAAGGACAAGAAAAATTACT 57.553 30.769 0.00 0.00 0.00 2.24
101 102 8.084590 TCGAGAAAGGACAAGAAAAATTACTC 57.915 34.615 0.00 0.00 0.00 2.59
102 103 7.172703 TCGAGAAAGGACAAGAAAAATTACTCC 59.827 37.037 0.00 0.00 0.00 3.85
103 104 7.526142 AGAAAGGACAAGAAAAATTACTCCC 57.474 36.000 0.00 0.00 0.00 4.30
104 105 7.066781 AGAAAGGACAAGAAAAATTACTCCCA 58.933 34.615 0.00 0.00 0.00 4.37
105 106 6.901081 AAGGACAAGAAAAATTACTCCCAG 57.099 37.500 0.00 0.00 0.00 4.45
106 107 5.953571 AGGACAAGAAAAATTACTCCCAGT 58.046 37.500 0.00 0.00 0.00 4.00
107 108 6.373759 AGGACAAGAAAAATTACTCCCAGTT 58.626 36.000 0.00 0.00 0.00 3.16
108 109 6.490381 AGGACAAGAAAAATTACTCCCAGTTC 59.510 38.462 0.00 0.00 0.00 3.01
109 110 6.264518 GGACAAGAAAAATTACTCCCAGTTCA 59.735 38.462 0.00 0.00 0.00 3.18
110 111 7.277174 ACAAGAAAAATTACTCCCAGTTCAG 57.723 36.000 0.00 0.00 0.00 3.02
111 112 6.833933 ACAAGAAAAATTACTCCCAGTTCAGT 59.166 34.615 0.00 0.00 0.00 3.41
112 113 7.342026 ACAAGAAAAATTACTCCCAGTTCAGTT 59.658 33.333 0.00 0.00 0.00 3.16
113 114 7.898014 AGAAAAATTACTCCCAGTTCAGTTT 57.102 32.000 0.00 0.00 0.00 2.66
114 115 8.306313 AGAAAAATTACTCCCAGTTCAGTTTT 57.694 30.769 0.00 0.00 0.00 2.43
115 116 8.758829 AGAAAAATTACTCCCAGTTCAGTTTTT 58.241 29.630 0.00 0.00 0.00 1.94
152 153 2.882927 TCGAAACCTATCGACATGGG 57.117 50.000 0.00 0.00 46.12 4.00
153 154 2.104967 TCGAAACCTATCGACATGGGT 58.895 47.619 0.00 0.00 45.71 4.51
154 155 2.100252 TCGAAACCTATCGACATGGGTC 59.900 50.000 0.00 0.00 43.00 4.46
155 156 2.159156 CGAAACCTATCGACATGGGTCA 60.159 50.000 0.00 0.00 43.00 4.02
156 157 3.492656 CGAAACCTATCGACATGGGTCAT 60.493 47.826 0.00 0.00 43.00 3.06
157 158 4.451900 GAAACCTATCGACATGGGTCATT 58.548 43.478 0.00 0.00 43.00 2.57
158 159 5.607477 GAAACCTATCGACATGGGTCATTA 58.393 41.667 0.00 0.00 43.00 1.90
159 160 5.825593 AACCTATCGACATGGGTCATTAT 57.174 39.130 0.00 0.00 43.00 1.28
160 161 5.825593 ACCTATCGACATGGGTCATTATT 57.174 39.130 0.00 0.00 39.72 1.40
161 162 6.187727 ACCTATCGACATGGGTCATTATTT 57.812 37.500 0.00 0.00 39.72 1.40
162 163 7.311092 ACCTATCGACATGGGTCATTATTTA 57.689 36.000 0.00 0.00 39.72 1.40
163 164 7.741785 ACCTATCGACATGGGTCATTATTTAA 58.258 34.615 0.00 0.00 39.72 1.52
164 165 8.215050 ACCTATCGACATGGGTCATTATTTAAA 58.785 33.333 0.00 0.00 39.72 1.52
165 166 9.062524 CCTATCGACATGGGTCATTATTTAAAA 57.937 33.333 0.00 0.00 44.54 1.52
168 169 9.965824 ATCGACATGGGTCATTATTTAAAAATC 57.034 29.630 0.00 0.00 44.54 2.17
169 170 9.184523 TCGACATGGGTCATTATTTAAAAATCT 57.815 29.630 0.00 0.00 44.54 2.40
170 171 9.450807 CGACATGGGTCATTATTTAAAAATCTC 57.549 33.333 0.00 0.00 44.54 2.75
171 172 9.450807 GACATGGGTCATTATTTAAAAATCTCG 57.549 33.333 0.00 0.00 43.73 4.04
172 173 9.184523 ACATGGGTCATTATTTAAAAATCTCGA 57.815 29.630 0.00 0.00 0.00 4.04
173 174 9.450807 CATGGGTCATTATTTAAAAATCTCGAC 57.549 33.333 0.00 0.00 0.00 4.20
174 175 7.690228 TGGGTCATTATTTAAAAATCTCGACG 58.310 34.615 0.00 0.00 0.00 5.12
175 176 6.631636 GGGTCATTATTTAAAAATCTCGACGC 59.368 38.462 0.00 0.38 31.85 5.19
176 177 6.353582 GGTCATTATTTAAAAATCTCGACGCG 59.646 38.462 3.53 3.53 0.00 6.01
177 178 6.353582 GTCATTATTTAAAAATCTCGACGCGG 59.646 38.462 12.47 0.00 0.00 6.46
178 179 6.256104 TCATTATTTAAAAATCTCGACGCGGA 59.744 34.615 12.47 0.00 0.00 5.54
179 180 4.932268 ATTTAAAAATCTCGACGCGGAA 57.068 36.364 12.47 0.00 0.00 4.30
180 181 4.728917 TTTAAAAATCTCGACGCGGAAA 57.271 36.364 12.47 0.00 0.00 3.13
181 182 4.728917 TTAAAAATCTCGACGCGGAAAA 57.271 36.364 12.47 0.00 0.00 2.29
182 183 3.824414 AAAAATCTCGACGCGGAAAAT 57.176 38.095 12.47 0.00 0.00 1.82
183 184 3.385079 AAAATCTCGACGCGGAAAATC 57.615 42.857 12.47 0.00 0.00 2.17
184 185 1.287425 AATCTCGACGCGGAAAATCC 58.713 50.000 12.47 0.00 0.00 3.01
185 186 0.174845 ATCTCGACGCGGAAAATCCA 59.825 50.000 12.47 0.00 35.91 3.41
186 187 0.038067 TCTCGACGCGGAAAATCCAA 60.038 50.000 12.47 0.00 35.91 3.53
187 188 0.094730 CTCGACGCGGAAAATCCAAC 59.905 55.000 12.47 0.00 35.91 3.77
188 189 0.320073 TCGACGCGGAAAATCCAACT 60.320 50.000 12.47 0.00 35.91 3.16
189 190 1.067706 TCGACGCGGAAAATCCAACTA 60.068 47.619 12.47 0.00 35.91 2.24
190 191 1.931172 CGACGCGGAAAATCCAACTAT 59.069 47.619 12.47 0.00 35.91 2.12
191 192 2.285602 CGACGCGGAAAATCCAACTATG 60.286 50.000 12.47 0.00 35.91 2.23
192 193 2.933906 GACGCGGAAAATCCAACTATGA 59.066 45.455 12.47 0.00 35.91 2.15
193 194 3.340034 ACGCGGAAAATCCAACTATGAA 58.660 40.909 12.47 0.00 35.91 2.57
194 195 3.754323 ACGCGGAAAATCCAACTATGAAA 59.246 39.130 12.47 0.00 35.91 2.69
195 196 4.216687 ACGCGGAAAATCCAACTATGAAAA 59.783 37.500 12.47 0.00 35.91 2.29
196 197 4.557301 CGCGGAAAATCCAACTATGAAAAC 59.443 41.667 0.00 0.00 35.91 2.43
197 198 5.465935 GCGGAAAATCCAACTATGAAAACA 58.534 37.500 0.00 0.00 35.91 2.83
198 199 5.572896 GCGGAAAATCCAACTATGAAAACAG 59.427 40.000 0.00 0.00 35.91 3.16
199 200 6.677913 CGGAAAATCCAACTATGAAAACAGT 58.322 36.000 0.00 0.00 35.91 3.55
200 201 7.145323 CGGAAAATCCAACTATGAAAACAGTT 58.855 34.615 0.00 0.00 35.91 3.16
201 202 7.326063 CGGAAAATCCAACTATGAAAACAGTTC 59.674 37.037 0.00 0.00 35.91 3.01
202 203 8.141268 GGAAAATCCAACTATGAAAACAGTTCA 58.859 33.333 0.00 0.00 36.28 3.18
203 204 9.528018 GAAAATCCAACTATGAAAACAGTTCAA 57.472 29.630 0.00 0.00 32.72 2.69
204 205 9.533253 AAAATCCAACTATGAAAACAGTTCAAG 57.467 29.630 0.00 0.00 32.72 3.02
205 206 8.463930 AATCCAACTATGAAAACAGTTCAAGA 57.536 30.769 0.00 0.00 32.72 3.02
206 207 8.641498 ATCCAACTATGAAAACAGTTCAAGAT 57.359 30.769 0.00 0.00 32.72 2.40
207 208 8.463930 TCCAACTATGAAAACAGTTCAAGATT 57.536 30.769 0.00 0.00 32.72 2.40
208 209 8.912988 TCCAACTATGAAAACAGTTCAAGATTT 58.087 29.630 0.00 0.00 32.72 2.17
209 210 8.971321 CCAACTATGAAAACAGTTCAAGATTTG 58.029 33.333 0.00 0.00 32.72 2.32
210 211 8.971321 CAACTATGAAAACAGTTCAAGATTTGG 58.029 33.333 0.00 0.00 32.72 3.28
211 212 8.463930 ACTATGAAAACAGTTCAAGATTTGGA 57.536 30.769 0.00 0.00 31.55 3.53
212 213 9.082313 ACTATGAAAACAGTTCAAGATTTGGAT 57.918 29.630 0.00 0.00 31.55 3.41
213 214 9.350357 CTATGAAAACAGTTCAAGATTTGGATG 57.650 33.333 0.00 0.00 31.55 3.51
214 215 5.984926 TGAAAACAGTTCAAGATTTGGATGC 59.015 36.000 0.00 0.00 0.00 3.91
215 216 5.534207 AAACAGTTCAAGATTTGGATGCA 57.466 34.783 0.00 0.00 0.00 3.96
216 217 5.534207 AACAGTTCAAGATTTGGATGCAA 57.466 34.783 0.00 0.00 0.00 4.08
217 218 5.534207 ACAGTTCAAGATTTGGATGCAAA 57.466 34.783 15.13 15.13 0.00 3.68
218 219 5.535333 ACAGTTCAAGATTTGGATGCAAAG 58.465 37.500 17.67 4.60 0.00 2.77
219 220 5.069516 ACAGTTCAAGATTTGGATGCAAAGT 59.930 36.000 17.67 5.14 0.00 2.66
220 221 5.987347 CAGTTCAAGATTTGGATGCAAAGTT 59.013 36.000 17.67 10.69 0.00 2.66
221 222 6.480981 CAGTTCAAGATTTGGATGCAAAGTTT 59.519 34.615 17.67 11.17 0.00 2.66
222 223 7.652909 CAGTTCAAGATTTGGATGCAAAGTTTA 59.347 33.333 17.67 3.47 0.00 2.01
223 224 7.653311 AGTTCAAGATTTGGATGCAAAGTTTAC 59.347 33.333 17.67 12.46 0.00 2.01
224 225 7.048629 TCAAGATTTGGATGCAAAGTTTACA 57.951 32.000 17.67 0.00 0.00 2.41
225 226 7.669427 TCAAGATTTGGATGCAAAGTTTACAT 58.331 30.769 17.67 0.73 0.00 2.29
226 227 7.599621 TCAAGATTTGGATGCAAAGTTTACATG 59.400 33.333 17.67 9.43 0.00 3.21
227 228 7.230849 AGATTTGGATGCAAAGTTTACATGA 57.769 32.000 17.67 0.00 0.00 3.07
228 229 7.844009 AGATTTGGATGCAAAGTTTACATGAT 58.156 30.769 17.67 0.00 0.00 2.45
229 230 8.970020 AGATTTGGATGCAAAGTTTACATGATA 58.030 29.630 17.67 0.00 0.00 2.15
230 231 9.585099 GATTTGGATGCAAAGTTTACATGATAA 57.415 29.630 17.67 0.00 0.00 1.75
231 232 9.941325 ATTTGGATGCAAAGTTTACATGATAAA 57.059 25.926 17.67 5.46 0.00 1.40
232 233 9.770097 TTTGGATGCAAAGTTTACATGATAAAA 57.230 25.926 8.47 0.07 0.00 1.52
233 234 8.755696 TGGATGCAAAGTTTACATGATAAAAC 57.244 30.769 6.04 7.29 36.13 2.43
234 235 8.363390 TGGATGCAAAGTTTACATGATAAAACA 58.637 29.630 6.04 5.08 37.92 2.83
235 236 9.202273 GGATGCAAAGTTTACATGATAAAACAA 57.798 29.630 6.04 5.87 37.92 2.83
261 262 9.915629 AAAAAGTAAAAGTCACATGTTGTAACA 57.084 25.926 0.00 0.00 44.06 2.41
262 263 9.915629 AAAAGTAAAAGTCACATGTTGTAACAA 57.084 25.926 0.00 0.00 43.03 2.83
263 264 9.567848 AAAGTAAAAGTCACATGTTGTAACAAG 57.432 29.630 0.00 0.00 43.03 3.16
264 265 8.276252 AGTAAAAGTCACATGTTGTAACAAGT 57.724 30.769 0.00 0.64 43.03 3.16
269 270 3.708563 ACATGTTGTAACAAGTGGCAC 57.291 42.857 10.29 10.29 43.03 5.01
270 271 2.032799 ACATGTTGTAACAAGTGGCACG 59.967 45.455 12.71 0.97 43.03 5.34
271 272 1.740297 TGTTGTAACAAGTGGCACGT 58.260 45.000 12.71 6.02 35.67 4.49
272 273 2.902523 TGTTGTAACAAGTGGCACGTA 58.097 42.857 12.71 0.70 35.67 3.57
273 274 3.468770 TGTTGTAACAAGTGGCACGTAT 58.531 40.909 12.71 4.19 35.67 3.06
274 275 4.629092 TGTTGTAACAAGTGGCACGTATA 58.371 39.130 12.71 3.19 35.67 1.47
275 276 4.448395 TGTTGTAACAAGTGGCACGTATAC 59.552 41.667 12.71 15.01 35.67 1.47
276 277 4.254402 TGTAACAAGTGGCACGTATACA 57.746 40.909 19.68 19.68 0.00 2.29
277 278 4.239304 TGTAACAAGTGGCACGTATACAG 58.761 43.478 19.68 6.75 0.00 2.74
278 279 3.396260 AACAAGTGGCACGTATACAGT 57.604 42.857 12.71 0.00 0.00 3.55
279 280 2.683968 ACAAGTGGCACGTATACAGTG 58.316 47.619 12.71 17.82 42.15 3.66
286 287 2.470196 CACGTATACAGTGCGCTACT 57.530 50.000 9.73 7.89 39.75 2.57
287 288 2.793933 CACGTATACAGTGCGCTACTT 58.206 47.619 9.73 4.77 39.75 2.24
288 289 2.530297 CACGTATACAGTGCGCTACTTG 59.470 50.000 9.73 1.48 39.75 3.16
289 290 2.163010 ACGTATACAGTGCGCTACTTGT 59.837 45.455 9.73 10.20 39.75 3.16
290 291 2.782192 CGTATACAGTGCGCTACTTGTC 59.218 50.000 9.73 0.00 37.60 3.18
291 292 1.909376 ATACAGTGCGCTACTTGTCG 58.091 50.000 9.73 1.55 37.60 4.35
297 298 4.261888 CGCTACTTGTCGCAACCT 57.738 55.556 0.00 0.00 0.00 3.50
298 299 2.070861 CGCTACTTGTCGCAACCTC 58.929 57.895 0.00 0.00 0.00 3.85
299 300 0.666274 CGCTACTTGTCGCAACCTCA 60.666 55.000 0.00 0.00 0.00 3.86
300 301 1.071605 GCTACTTGTCGCAACCTCAG 58.928 55.000 0.00 0.00 0.00 3.35
301 302 1.336887 GCTACTTGTCGCAACCTCAGA 60.337 52.381 0.00 0.00 0.00 3.27
302 303 2.675317 GCTACTTGTCGCAACCTCAGAT 60.675 50.000 0.00 0.00 0.00 2.90
303 304 3.428999 GCTACTTGTCGCAACCTCAGATA 60.429 47.826 0.00 0.00 0.00 1.98
304 305 3.895232 ACTTGTCGCAACCTCAGATAT 57.105 42.857 0.00 0.00 0.00 1.63
305 306 3.525537 ACTTGTCGCAACCTCAGATATG 58.474 45.455 0.00 0.00 0.00 1.78
306 307 2.602257 TGTCGCAACCTCAGATATGG 57.398 50.000 0.00 0.00 0.00 2.74
307 308 1.138859 TGTCGCAACCTCAGATATGGG 59.861 52.381 0.00 0.00 0.00 4.00
308 309 1.412710 GTCGCAACCTCAGATATGGGA 59.587 52.381 0.00 0.00 33.10 4.37
309 310 1.688735 TCGCAACCTCAGATATGGGAG 59.311 52.381 0.00 0.00 32.02 4.30
310 311 1.688735 CGCAACCTCAGATATGGGAGA 59.311 52.381 0.00 0.00 32.87 3.71
311 312 2.301296 CGCAACCTCAGATATGGGAGAT 59.699 50.000 0.00 0.00 32.87 2.75
312 313 3.616076 CGCAACCTCAGATATGGGAGATC 60.616 52.174 0.00 0.00 32.87 2.75
313 314 3.582208 GCAACCTCAGATATGGGAGATCT 59.418 47.826 0.00 0.00 33.82 2.75
314 315 4.041444 GCAACCTCAGATATGGGAGATCTT 59.959 45.833 0.00 0.00 31.05 2.40
315 316 5.455899 GCAACCTCAGATATGGGAGATCTTT 60.456 44.000 0.00 0.00 31.05 2.52
316 317 5.822132 ACCTCAGATATGGGAGATCTTTG 57.178 43.478 0.00 0.00 31.05 2.77
317 318 4.041444 ACCTCAGATATGGGAGATCTTTGC 59.959 45.833 0.00 0.00 31.05 3.68
318 319 4.041321 CCTCAGATATGGGAGATCTTTGCA 59.959 45.833 0.00 0.00 31.05 4.08
319 320 5.455755 CCTCAGATATGGGAGATCTTTGCAA 60.456 44.000 0.00 0.00 31.05 4.08
320 321 6.005066 TCAGATATGGGAGATCTTTGCAAA 57.995 37.500 12.14 12.14 31.05 3.68
321 322 6.060136 TCAGATATGGGAGATCTTTGCAAAG 58.940 40.000 29.53 29.53 37.36 2.77
369 370 9.760077 ATCCGTCTCATAATATAAGAACGTTTT 57.240 29.630 0.46 0.00 0.00 2.43
370 371 9.590451 TCCGTCTCATAATATAAGAACGTTTTT 57.410 29.630 9.22 9.22 0.00 1.94
390 391 4.884668 TTTACACTAGTGAGACCAAGGG 57.115 45.455 29.30 0.00 0.00 3.95
391 392 2.696526 ACACTAGTGAGACCAAGGGA 57.303 50.000 29.30 0.00 0.00 4.20
392 393 2.530701 ACACTAGTGAGACCAAGGGAG 58.469 52.381 29.30 0.00 0.00 4.30
393 394 2.158295 ACACTAGTGAGACCAAGGGAGT 60.158 50.000 29.30 0.00 0.00 3.85
394 395 2.232452 CACTAGTGAGACCAAGGGAGTG 59.768 54.545 18.45 0.00 0.00 3.51
395 396 2.110188 ACTAGTGAGACCAAGGGAGTGA 59.890 50.000 0.00 0.00 0.00 3.41
396 397 2.334006 AGTGAGACCAAGGGAGTGAT 57.666 50.000 0.00 0.00 0.00 3.06
397 398 2.625639 AGTGAGACCAAGGGAGTGATT 58.374 47.619 0.00 0.00 0.00 2.57
398 399 3.791320 AGTGAGACCAAGGGAGTGATTA 58.209 45.455 0.00 0.00 0.00 1.75
399 400 3.772025 AGTGAGACCAAGGGAGTGATTAG 59.228 47.826 0.00 0.00 0.00 1.73
400 401 3.515901 GTGAGACCAAGGGAGTGATTAGT 59.484 47.826 0.00 0.00 0.00 2.24
401 402 4.710375 GTGAGACCAAGGGAGTGATTAGTA 59.290 45.833 0.00 0.00 0.00 1.82
402 403 4.710375 TGAGACCAAGGGAGTGATTAGTAC 59.290 45.833 0.00 0.00 0.00 2.73
403 404 4.949121 AGACCAAGGGAGTGATTAGTACT 58.051 43.478 0.00 0.00 0.00 2.73
404 405 5.342866 AGACCAAGGGAGTGATTAGTACTT 58.657 41.667 0.00 0.00 0.00 2.24
405 406 5.785940 AGACCAAGGGAGTGATTAGTACTTT 59.214 40.000 0.00 0.00 0.00 2.66
406 407 6.051179 ACCAAGGGAGTGATTAGTACTTTC 57.949 41.667 0.00 0.00 0.00 2.62
407 408 5.109903 CCAAGGGAGTGATTAGTACTTTCG 58.890 45.833 0.00 0.00 0.00 3.46
408 409 5.105473 CCAAGGGAGTGATTAGTACTTTCGA 60.105 44.000 0.00 0.00 0.00 3.71
409 410 5.579564 AGGGAGTGATTAGTACTTTCGAC 57.420 43.478 0.00 1.24 0.00 4.20
410 411 5.014858 AGGGAGTGATTAGTACTTTCGACA 58.985 41.667 0.00 0.00 0.00 4.35
411 412 5.657302 AGGGAGTGATTAGTACTTTCGACAT 59.343 40.000 0.00 0.00 0.00 3.06
412 413 6.832384 AGGGAGTGATTAGTACTTTCGACATA 59.168 38.462 0.00 0.00 0.00 2.29
413 414 7.341256 AGGGAGTGATTAGTACTTTCGACATAA 59.659 37.037 0.00 0.00 0.00 1.90
414 415 8.142551 GGGAGTGATTAGTACTTTCGACATAAT 58.857 37.037 0.00 0.00 0.00 1.28
415 416 9.182933 GGAGTGATTAGTACTTTCGACATAATC 57.817 37.037 0.00 2.25 32.70 1.75
416 417 9.182933 GAGTGATTAGTACTTTCGACATAATCC 57.817 37.037 0.00 0.00 31.61 3.01
417 418 8.915036 AGTGATTAGTACTTTCGACATAATCCT 58.085 33.333 0.00 0.00 31.61 3.24
418 419 9.530633 GTGATTAGTACTTTCGACATAATCCTT 57.469 33.333 0.00 0.00 31.61 3.36
419 420 9.529325 TGATTAGTACTTTCGACATAATCCTTG 57.471 33.333 0.00 0.00 31.61 3.61
420 421 9.530633 GATTAGTACTTTCGACATAATCCTTGT 57.469 33.333 0.00 0.00 0.00 3.16
421 422 9.886132 ATTAGTACTTTCGACATAATCCTTGTT 57.114 29.630 0.00 0.00 0.00 2.83
422 423 9.715121 TTAGTACTTTCGACATAATCCTTGTTT 57.285 29.630 0.00 0.00 0.00 2.83
423 424 8.617290 AGTACTTTCGACATAATCCTTGTTTT 57.383 30.769 0.00 0.00 0.00 2.43
424 425 9.063615 AGTACTTTCGACATAATCCTTGTTTTT 57.936 29.630 0.00 0.00 0.00 1.94
466 467 7.849322 AAAAATTGGTACATACTCCCTTTGT 57.151 32.000 0.00 0.00 39.30 2.83
467 468 7.462571 AAAATTGGTACATACTCCCTTTGTC 57.537 36.000 0.00 0.00 39.30 3.18
468 469 4.563140 TTGGTACATACTCCCTTTGTCC 57.437 45.455 0.00 0.00 39.30 4.02
469 470 3.522759 TGGTACATACTCCCTTTGTCCA 58.477 45.455 0.00 0.00 0.00 4.02
470 471 4.108570 TGGTACATACTCCCTTTGTCCAT 58.891 43.478 0.00 0.00 0.00 3.41
471 472 5.282129 TGGTACATACTCCCTTTGTCCATA 58.718 41.667 0.00 0.00 0.00 2.74
472 473 5.727279 TGGTACATACTCCCTTTGTCCATAA 59.273 40.000 0.00 0.00 0.00 1.90
473 474 6.215841 TGGTACATACTCCCTTTGTCCATAAA 59.784 38.462 0.00 0.00 0.00 1.40
474 475 7.092174 TGGTACATACTCCCTTTGTCCATAAAT 60.092 37.037 0.00 0.00 0.00 1.40
475 476 8.434392 GGTACATACTCCCTTTGTCCATAAATA 58.566 37.037 0.00 0.00 0.00 1.40
476 477 9.841295 GTACATACTCCCTTTGTCCATAAATAA 57.159 33.333 0.00 0.00 0.00 1.40
477 478 8.980481 ACATACTCCCTTTGTCCATAAATAAG 57.020 34.615 0.00 0.00 0.00 1.73
478 479 8.557450 ACATACTCCCTTTGTCCATAAATAAGT 58.443 33.333 0.00 0.00 0.00 2.24
479 480 8.840321 CATACTCCCTTTGTCCATAAATAAGTG 58.160 37.037 0.00 0.00 0.00 3.16
480 481 6.790319 ACTCCCTTTGTCCATAAATAAGTGT 58.210 36.000 0.00 0.00 0.00 3.55
481 482 7.924541 ACTCCCTTTGTCCATAAATAAGTGTA 58.075 34.615 0.00 0.00 0.00 2.90
482 483 7.827729 ACTCCCTTTGTCCATAAATAAGTGTAC 59.172 37.037 0.00 0.00 0.00 2.90
483 484 7.691213 TCCCTTTGTCCATAAATAAGTGTACA 58.309 34.615 0.00 0.00 0.00 2.90
484 485 8.333235 TCCCTTTGTCCATAAATAAGTGTACAT 58.667 33.333 0.00 0.00 0.00 2.29
485 486 8.966868 CCCTTTGTCCATAAATAAGTGTACATT 58.033 33.333 0.00 0.00 0.00 2.71
490 491 9.899661 TGTCCATAAATAAGTGTACATTTAGCT 57.100 29.630 15.04 8.02 31.90 3.32
502 503 9.338622 AGTGTACATTTAGCTTTTGTCTTAAGT 57.661 29.630 0.00 0.00 0.00 2.24
503 504 9.595357 GTGTACATTTAGCTTTTGTCTTAAGTC 57.405 33.333 0.00 0.00 0.00 3.01
504 505 9.332502 TGTACATTTAGCTTTTGTCTTAAGTCA 57.667 29.630 1.63 0.00 0.00 3.41
629 630 8.511604 ACTAATTTAGTGTCATAAATGCTGCT 57.488 30.769 8.27 0.00 37.69 4.24
630 631 9.613428 ACTAATTTAGTGTCATAAATGCTGCTA 57.387 29.630 8.27 0.00 37.69 3.49
631 632 9.869844 CTAATTTAGTGTCATAAATGCTGCTAC 57.130 33.333 0.00 0.00 35.91 3.58
632 633 7.864108 ATTTAGTGTCATAAATGCTGCTACA 57.136 32.000 0.00 0.00 34.76 2.74
633 634 7.864108 TTTAGTGTCATAAATGCTGCTACAT 57.136 32.000 0.00 0.00 0.00 2.29
634 635 7.864108 TTAGTGTCATAAATGCTGCTACATT 57.136 32.000 0.00 0.00 42.01 2.71
636 637 7.161773 AGTGTCATAAATGCTGCTACATTTT 57.838 32.000 18.38 7.77 45.63 1.82
637 638 7.605449 AGTGTCATAAATGCTGCTACATTTTT 58.395 30.769 18.38 10.83 45.63 1.94
638 639 7.756722 AGTGTCATAAATGCTGCTACATTTTTC 59.243 33.333 18.38 10.02 45.63 2.29
639 640 7.756722 GTGTCATAAATGCTGCTACATTTTTCT 59.243 33.333 18.38 5.99 45.63 2.52
640 641 8.955388 TGTCATAAATGCTGCTACATTTTTCTA 58.045 29.630 18.38 5.60 45.63 2.10
641 642 9.956720 GTCATAAATGCTGCTACATTTTTCTAT 57.043 29.630 18.38 7.24 45.63 1.98
648 649 9.793252 ATGCTGCTACATTTTTCTATAAAGTTG 57.207 29.630 0.00 0.00 0.00 3.16
649 650 8.243426 TGCTGCTACATTTTTCTATAAAGTTGG 58.757 33.333 0.00 0.00 0.00 3.77
650 651 7.220875 GCTGCTACATTTTTCTATAAAGTTGGC 59.779 37.037 0.00 0.00 0.00 4.52
651 652 8.116651 TGCTACATTTTTCTATAAAGTTGGCA 57.883 30.769 0.00 0.00 0.00 4.92
652 653 8.580720 TGCTACATTTTTCTATAAAGTTGGCAA 58.419 29.630 0.00 0.00 0.00 4.52
653 654 9.418045 GCTACATTTTTCTATAAAGTTGGCAAA 57.582 29.630 0.00 0.00 0.00 3.68
656 657 9.830975 ACATTTTTCTATAAAGTTGGCAAAGTT 57.169 25.926 0.00 1.36 0.00 2.66
708 709 9.852784 TTAGATATACATTTATTCAGGGAGGGA 57.147 33.333 0.00 0.00 0.00 4.20
709 710 8.386012 AGATATACATTTATTCAGGGAGGGAG 57.614 38.462 0.00 0.00 0.00 4.30
710 711 5.850046 ATACATTTATTCAGGGAGGGAGG 57.150 43.478 0.00 0.00 0.00 4.30
711 712 3.747852 ACATTTATTCAGGGAGGGAGGA 58.252 45.455 0.00 0.00 0.00 3.71
712 713 4.119155 ACATTTATTCAGGGAGGGAGGAA 58.881 43.478 0.00 0.00 0.00 3.36
713 714 4.166919 ACATTTATTCAGGGAGGGAGGAAG 59.833 45.833 0.00 0.00 0.00 3.46
714 715 3.508952 TTATTCAGGGAGGGAGGAAGT 57.491 47.619 0.00 0.00 0.00 3.01
715 716 4.637288 TTATTCAGGGAGGGAGGAAGTA 57.363 45.455 0.00 0.00 0.00 2.24
716 717 3.734344 ATTCAGGGAGGGAGGAAGTAT 57.266 47.619 0.00 0.00 0.00 2.12
727 728 3.560025 GGGAGGAAGTATACATGCATGGG 60.560 52.174 29.41 7.08 0.00 4.00
742 743 2.205074 CATGGGAAGGAACGATTCTCG 58.795 52.381 0.00 0.00 46.93 4.04
748 749 0.895530 AGGAACGATTCTCGAGGCAA 59.104 50.000 13.56 0.01 43.74 4.52
750 751 1.393883 GGAACGATTCTCGAGGCAAAC 59.606 52.381 13.56 0.00 43.74 2.93
761 764 3.486383 TCGAGGCAAACAAAAGAAGGAT 58.514 40.909 0.00 0.00 0.00 3.24
797 800 5.931532 CGATAAGCGCATATGGAAAGAAAT 58.068 37.500 10.30 0.00 0.00 2.17
811 814 5.522097 TGGAAAGAAATTTTTCGCCTTGTTC 59.478 36.000 0.00 0.00 41.92 3.18
815 818 0.601057 ATTTTTCGCCTTGTTCCCGG 59.399 50.000 0.00 0.00 0.00 5.73
911 918 2.491693 ACGCCGATTTCATCCAACAAAT 59.508 40.909 0.00 0.00 0.00 2.32
917 924 6.034898 GCCGATTTCATCCAACAAATTAACAG 59.965 38.462 0.00 0.00 0.00 3.16
920 927 4.433186 TCATCCAACAAATTAACAGCCG 57.567 40.909 0.00 0.00 0.00 5.52
980 988 2.768253 ACGTGCATCAGATCCAAAGA 57.232 45.000 0.00 0.00 0.00 2.52
987 995 3.497640 GCATCAGATCCAAAGATTCCTCG 59.502 47.826 0.00 0.00 30.90 4.63
1103 1117 2.671070 CCACGCCTTCCACCTCAT 59.329 61.111 0.00 0.00 0.00 2.90
2024 2115 4.436998 CGGTCACCGTCCAGGAGC 62.437 72.222 8.54 0.00 45.00 4.70
2054 2145 1.965930 GTGACGTGCTTGCATCCCA 60.966 57.895 0.00 0.00 0.00 4.37
2306 2405 2.429930 CCGTTGTCCAGAGGCCAA 59.570 61.111 5.01 0.00 0.00 4.52
2653 2767 4.227134 ACTGCTAGATGCGCCCCG 62.227 66.667 4.18 0.00 46.63 5.73
2655 2769 4.221422 TGCTAGATGCGCCCCGAC 62.221 66.667 4.18 0.00 46.63 4.79
2744 2858 0.387367 GAAGAAGTCACGCGAGCAGA 60.387 55.000 15.93 1.60 0.00 4.26
2746 2860 1.210413 GAAGTCACGCGAGCAGAGA 59.790 57.895 15.93 0.00 0.00 3.10
2754 2868 2.487428 CGAGCAGAGACAGACGGG 59.513 66.667 0.00 0.00 0.00 5.28
2972 4274 6.562640 GCAATCAAGCAAGTGTGTGTTAATTG 60.563 38.462 0.00 0.00 0.00 2.32
2983 4285 6.071952 AGTGTGTGTTAATTGAATGCCTAAGG 60.072 38.462 0.00 0.00 0.00 2.69
2997 4299 2.356069 GCCTAAGGCTGTGTTTGATAGC 59.644 50.000 0.00 0.00 46.69 2.97
2998 4300 3.609853 CCTAAGGCTGTGTTTGATAGCA 58.390 45.455 0.00 0.00 40.53 3.49
2999 4301 4.009675 CCTAAGGCTGTGTTTGATAGCAA 58.990 43.478 0.00 0.00 40.53 3.91
3000 4302 4.458989 CCTAAGGCTGTGTTTGATAGCAAA 59.541 41.667 1.13 1.13 40.53 3.68
3001 4303 5.126061 CCTAAGGCTGTGTTTGATAGCAAAT 59.874 40.000 9.70 0.00 45.01 2.32
3002 4304 4.445452 AGGCTGTGTTTGATAGCAAATG 57.555 40.909 9.70 2.47 45.01 2.32
3003 4305 3.194116 AGGCTGTGTTTGATAGCAAATGG 59.806 43.478 9.70 2.16 45.01 3.16
3004 4306 3.056607 GGCTGTGTTTGATAGCAAATGGT 60.057 43.478 9.70 0.00 45.01 3.55
3005 4307 3.922240 GCTGTGTTTGATAGCAAATGGTG 59.078 43.478 9.70 2.80 45.01 4.17
3006 4308 4.321156 GCTGTGTTTGATAGCAAATGGTGA 60.321 41.667 9.70 0.00 45.01 4.02
3007 4309 5.771469 CTGTGTTTGATAGCAAATGGTGAA 58.229 37.500 9.70 0.00 45.01 3.18
3008 4310 6.154203 TGTGTTTGATAGCAAATGGTGAAA 57.846 33.333 9.70 0.00 45.01 2.69
3009 4311 6.757237 TGTGTTTGATAGCAAATGGTGAAAT 58.243 32.000 9.70 0.00 45.01 2.17
3010 4312 7.890515 TGTGTTTGATAGCAAATGGTGAAATA 58.109 30.769 9.70 0.00 45.01 1.40
3011 4313 8.363390 TGTGTTTGATAGCAAATGGTGAAATAA 58.637 29.630 9.70 0.00 45.01 1.40
3012 4314 9.202273 GTGTTTGATAGCAAATGGTGAAATAAA 57.798 29.630 9.70 0.00 45.01 1.40
3013 4315 9.941325 TGTTTGATAGCAAATGGTGAAATAAAT 57.059 25.926 9.70 0.00 45.01 1.40
3042 4344 9.476202 AAGTATCCAAAACTGAAGTAATTTTGC 57.524 29.630 3.68 0.00 40.43 3.68
3043 4345 8.088365 AGTATCCAAAACTGAAGTAATTTTGCC 58.912 33.333 3.68 0.00 40.43 4.52
3044 4346 6.227298 TCCAAAACTGAAGTAATTTTGCCA 57.773 33.333 3.68 0.00 40.43 4.92
3045 4347 6.279882 TCCAAAACTGAAGTAATTTTGCCAG 58.720 36.000 3.68 0.00 40.43 4.85
3046 4348 6.048509 CCAAAACTGAAGTAATTTTGCCAGT 58.951 36.000 3.68 0.00 40.43 4.00
3047 4349 7.068839 TCCAAAACTGAAGTAATTTTGCCAGTA 59.931 33.333 0.00 0.00 40.43 2.74
3048 4350 7.382218 CCAAAACTGAAGTAATTTTGCCAGTAG 59.618 37.037 0.00 0.00 40.43 2.57
3049 4351 6.575162 AACTGAAGTAATTTTGCCAGTAGG 57.425 37.500 0.00 0.00 34.22 3.18
3050 4352 5.631119 ACTGAAGTAATTTTGCCAGTAGGT 58.369 37.500 0.00 0.00 37.19 3.08
3051 4353 6.775708 ACTGAAGTAATTTTGCCAGTAGGTA 58.224 36.000 0.00 0.00 37.19 3.08
3052 4354 7.402862 ACTGAAGTAATTTTGCCAGTAGGTAT 58.597 34.615 0.00 0.00 37.19 2.73
3053 4355 7.336931 ACTGAAGTAATTTTGCCAGTAGGTATG 59.663 37.037 0.00 0.00 37.19 2.39
3054 4356 7.398829 TGAAGTAATTTTGCCAGTAGGTATGA 58.601 34.615 0.00 0.00 37.19 2.15
3055 4357 7.552687 TGAAGTAATTTTGCCAGTAGGTATGAG 59.447 37.037 0.00 0.00 37.19 2.90
3056 4358 7.195374 AGTAATTTTGCCAGTAGGTATGAGA 57.805 36.000 0.00 0.00 37.19 3.27
3057 4359 7.806180 AGTAATTTTGCCAGTAGGTATGAGAT 58.194 34.615 0.00 0.00 37.19 2.75
3058 4360 8.934697 AGTAATTTTGCCAGTAGGTATGAGATA 58.065 33.333 0.00 0.00 37.19 1.98
3059 4361 8.989980 GTAATTTTGCCAGTAGGTATGAGATAC 58.010 37.037 0.00 0.00 37.19 2.24
3086 4388 6.987386 TGGTTTCATCAACGGAAATGTTAAT 58.013 32.000 0.00 0.00 36.71 1.40
3124 4426 1.176619 TGACCATCTCGACCACACGT 61.177 55.000 0.00 0.00 34.70 4.49
3179 4481 4.771590 TTGACACAATCTGGCTGATTTC 57.228 40.909 15.90 12.11 43.00 2.17
3193 4495 3.614150 GCTGATTTCCTGTGTCACGTAGA 60.614 47.826 0.00 0.00 0.00 2.59
3292 4596 1.034838 GCAGTTCACCCACACACCAA 61.035 55.000 0.00 0.00 0.00 3.67
3413 4717 4.047059 GCGCACATGGCAACTGCT 62.047 61.111 15.35 0.00 45.17 4.24
3557 4863 5.211454 CGAGTTGACATGTGTTTTTGCATA 58.789 37.500 1.15 0.00 0.00 3.14
3668 4975 0.677731 TGCCCTAGCATGCTTGTGAC 60.678 55.000 28.02 14.85 46.52 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.091784 GCATGATAATACATGTCTCGTTCATAT 57.908 33.333 0.00 0.00 46.25 1.78
4 5 8.087750 TGCATGATAATACATGTCTCGTTCATA 58.912 33.333 0.00 0.00 46.25 2.15
5 6 6.930722 TGCATGATAATACATGTCTCGTTCAT 59.069 34.615 0.00 3.62 46.25 2.57
6 7 6.279882 TGCATGATAATACATGTCTCGTTCA 58.720 36.000 0.00 1.14 46.25 3.18
7 8 6.769608 TGCATGATAATACATGTCTCGTTC 57.230 37.500 0.00 0.00 46.25 3.95
8 9 7.552458 TTTGCATGATAATACATGTCTCGTT 57.448 32.000 0.00 0.00 46.25 3.85
9 10 7.552458 TTTTGCATGATAATACATGTCTCGT 57.448 32.000 0.00 0.00 46.25 4.18
31 32 7.206687 TCACGAAAATAAATCTGTGCCTTTTT 58.793 30.769 0.00 0.00 0.00 1.94
32 33 6.744112 TCACGAAAATAAATCTGTGCCTTTT 58.256 32.000 0.00 0.00 0.00 2.27
33 34 6.206634 TCTCACGAAAATAAATCTGTGCCTTT 59.793 34.615 0.00 0.00 0.00 3.11
34 35 5.705441 TCTCACGAAAATAAATCTGTGCCTT 59.295 36.000 0.00 0.00 0.00 4.35
35 36 5.245531 TCTCACGAAAATAAATCTGTGCCT 58.754 37.500 0.00 0.00 0.00 4.75
36 37 5.447818 CCTCTCACGAAAATAAATCTGTGCC 60.448 44.000 0.00 0.00 0.00 5.01
37 38 5.563842 CCTCTCACGAAAATAAATCTGTGC 58.436 41.667 0.00 0.00 0.00 4.57
38 39 5.122239 TGCCTCTCACGAAAATAAATCTGTG 59.878 40.000 0.00 0.00 0.00 3.66
39 40 5.122396 GTGCCTCTCACGAAAATAAATCTGT 59.878 40.000 0.00 0.00 35.76 3.41
40 41 5.563842 GTGCCTCTCACGAAAATAAATCTG 58.436 41.667 0.00 0.00 35.76 2.90
41 42 5.803020 GTGCCTCTCACGAAAATAAATCT 57.197 39.130 0.00 0.00 35.76 2.40
60 61 2.010145 TCGAAGAGGCATAACTGTGC 57.990 50.000 0.00 0.00 44.31 4.57
73 74 7.568199 AATTTTTCTTGTCCTTTCTCGAAGA 57.432 32.000 0.00 0.00 37.57 2.87
74 75 8.560374 AGTAATTTTTCTTGTCCTTTCTCGAAG 58.440 33.333 0.00 0.00 35.02 3.79
75 76 8.446599 AGTAATTTTTCTTGTCCTTTCTCGAA 57.553 30.769 0.00 0.00 0.00 3.71
76 77 7.172703 GGAGTAATTTTTCTTGTCCTTTCTCGA 59.827 37.037 0.00 0.00 0.00 4.04
77 78 7.298854 GGAGTAATTTTTCTTGTCCTTTCTCG 58.701 38.462 0.00 0.00 0.00 4.04
78 79 7.230712 TGGGAGTAATTTTTCTTGTCCTTTCTC 59.769 37.037 0.00 0.00 0.00 2.87
79 80 7.066781 TGGGAGTAATTTTTCTTGTCCTTTCT 58.933 34.615 0.00 0.00 0.00 2.52
80 81 7.014326 ACTGGGAGTAATTTTTCTTGTCCTTTC 59.986 37.037 0.00 0.00 0.00 2.62
81 82 6.839134 ACTGGGAGTAATTTTTCTTGTCCTTT 59.161 34.615 0.00 0.00 0.00 3.11
82 83 6.373759 ACTGGGAGTAATTTTTCTTGTCCTT 58.626 36.000 0.00 0.00 0.00 3.36
83 84 5.953571 ACTGGGAGTAATTTTTCTTGTCCT 58.046 37.500 0.00 0.00 0.00 3.85
84 85 6.264518 TGAACTGGGAGTAATTTTTCTTGTCC 59.735 38.462 0.00 0.00 0.00 4.02
85 86 7.013369 ACTGAACTGGGAGTAATTTTTCTTGTC 59.987 37.037 0.00 0.00 0.00 3.18
86 87 6.833933 ACTGAACTGGGAGTAATTTTTCTTGT 59.166 34.615 0.00 0.00 0.00 3.16
87 88 7.277174 ACTGAACTGGGAGTAATTTTTCTTG 57.723 36.000 0.00 0.00 0.00 3.02
88 89 7.898014 AACTGAACTGGGAGTAATTTTTCTT 57.102 32.000 0.00 0.00 0.00 2.52
89 90 7.898014 AAACTGAACTGGGAGTAATTTTTCT 57.102 32.000 0.00 0.00 0.00 2.52
90 91 8.942338 AAAAACTGAACTGGGAGTAATTTTTC 57.058 30.769 0.00 0.00 0.00 2.29
133 134 2.100252 GACCCATGTCGATAGGTTTCGA 59.900 50.000 0.00 0.00 45.27 3.71
134 135 2.159156 TGACCCATGTCGATAGGTTTCG 60.159 50.000 0.00 0.00 44.86 3.46
135 136 3.536956 TGACCCATGTCGATAGGTTTC 57.463 47.619 0.00 0.00 44.86 2.78
136 137 4.503714 AATGACCCATGTCGATAGGTTT 57.496 40.909 0.00 0.00 44.86 3.27
137 138 5.825593 ATAATGACCCATGTCGATAGGTT 57.174 39.130 0.00 0.00 44.86 3.50
138 139 5.825593 AATAATGACCCATGTCGATAGGT 57.174 39.130 0.00 0.00 44.86 3.08
139 140 8.615878 TTTAAATAATGACCCATGTCGATAGG 57.384 34.615 0.00 0.00 44.86 2.57
142 143 9.965824 GATTTTTAAATAATGACCCATGTCGAT 57.034 29.630 0.00 0.00 44.86 3.59
143 144 9.184523 AGATTTTTAAATAATGACCCATGTCGA 57.815 29.630 0.00 0.00 44.86 4.20
144 145 9.450807 GAGATTTTTAAATAATGACCCATGTCG 57.549 33.333 0.00 0.00 44.86 4.35
145 146 9.450807 CGAGATTTTTAAATAATGACCCATGTC 57.549 33.333 0.00 0.00 42.12 3.06
146 147 9.184523 TCGAGATTTTTAAATAATGACCCATGT 57.815 29.630 0.00 0.00 0.00 3.21
147 148 9.450807 GTCGAGATTTTTAAATAATGACCCATG 57.549 33.333 0.00 0.00 0.00 3.66
148 149 8.342634 CGTCGAGATTTTTAAATAATGACCCAT 58.657 33.333 0.00 0.00 0.00 4.00
149 150 7.677747 GCGTCGAGATTTTTAAATAATGACCCA 60.678 37.037 0.00 0.00 0.00 4.51
150 151 6.631636 GCGTCGAGATTTTTAAATAATGACCC 59.368 38.462 0.00 0.00 0.00 4.46
151 152 6.353582 CGCGTCGAGATTTTTAAATAATGACC 59.646 38.462 0.00 0.00 0.00 4.02
152 153 6.353582 CCGCGTCGAGATTTTTAAATAATGAC 59.646 38.462 4.92 0.00 0.00 3.06
153 154 6.256104 TCCGCGTCGAGATTTTTAAATAATGA 59.744 34.615 4.92 0.00 0.00 2.57
154 155 6.415702 TCCGCGTCGAGATTTTTAAATAATG 58.584 36.000 4.92 0.00 0.00 1.90
155 156 6.592798 TCCGCGTCGAGATTTTTAAATAAT 57.407 33.333 4.92 0.00 0.00 1.28
156 157 6.406093 TTCCGCGTCGAGATTTTTAAATAA 57.594 33.333 4.92 0.00 0.00 1.40
157 158 6.406093 TTTCCGCGTCGAGATTTTTAAATA 57.594 33.333 4.92 0.00 0.00 1.40
158 159 4.932268 TTCCGCGTCGAGATTTTTAAAT 57.068 36.364 4.92 0.00 0.00 1.40
159 160 4.728917 TTTCCGCGTCGAGATTTTTAAA 57.271 36.364 4.92 0.00 0.00 1.52
160 161 4.728917 TTTTCCGCGTCGAGATTTTTAA 57.271 36.364 4.92 0.00 0.00 1.52
161 162 4.201744 GGATTTTCCGCGTCGAGATTTTTA 60.202 41.667 4.92 0.00 0.00 1.52
162 163 3.425758 GGATTTTCCGCGTCGAGATTTTT 60.426 43.478 4.92 0.00 0.00 1.94
163 164 2.095372 GGATTTTCCGCGTCGAGATTTT 59.905 45.455 4.92 0.00 0.00 1.82
164 165 1.664151 GGATTTTCCGCGTCGAGATTT 59.336 47.619 4.92 0.00 0.00 2.17
165 166 1.287425 GGATTTTCCGCGTCGAGATT 58.713 50.000 4.92 0.00 0.00 2.40
166 167 0.174845 TGGATTTTCCGCGTCGAGAT 59.825 50.000 4.92 0.00 40.17 2.75
167 168 0.038067 TTGGATTTTCCGCGTCGAGA 60.038 50.000 4.92 0.00 40.17 4.04
168 169 0.094730 GTTGGATTTTCCGCGTCGAG 59.905 55.000 4.92 0.00 40.17 4.04
169 170 0.320073 AGTTGGATTTTCCGCGTCGA 60.320 50.000 4.92 0.00 40.17 4.20
170 171 1.352114 TAGTTGGATTTTCCGCGTCG 58.648 50.000 4.92 0.00 40.17 5.12
171 172 2.933906 TCATAGTTGGATTTTCCGCGTC 59.066 45.455 4.92 0.00 40.17 5.19
172 173 2.980568 TCATAGTTGGATTTTCCGCGT 58.019 42.857 4.92 0.00 40.17 6.01
173 174 4.349663 TTTCATAGTTGGATTTTCCGCG 57.650 40.909 0.00 0.00 40.17 6.46
174 175 5.465935 TGTTTTCATAGTTGGATTTTCCGC 58.534 37.500 0.00 0.00 40.17 5.54
175 176 6.677913 ACTGTTTTCATAGTTGGATTTTCCG 58.322 36.000 0.00 0.00 40.17 4.30
176 177 8.141268 TGAACTGTTTTCATAGTTGGATTTTCC 58.859 33.333 0.00 0.00 37.27 3.13
177 178 9.528018 TTGAACTGTTTTCATAGTTGGATTTTC 57.472 29.630 0.00 0.00 37.27 2.29
178 179 9.533253 CTTGAACTGTTTTCATAGTTGGATTTT 57.467 29.630 0.00 0.00 37.27 1.82
179 180 8.912988 TCTTGAACTGTTTTCATAGTTGGATTT 58.087 29.630 0.00 0.00 37.27 2.17
180 181 8.463930 TCTTGAACTGTTTTCATAGTTGGATT 57.536 30.769 0.00 0.00 37.27 3.01
181 182 8.641498 ATCTTGAACTGTTTTCATAGTTGGAT 57.359 30.769 0.00 0.00 37.27 3.41
182 183 8.463930 AATCTTGAACTGTTTTCATAGTTGGA 57.536 30.769 0.00 0.00 37.27 3.53
183 184 8.971321 CAAATCTTGAACTGTTTTCATAGTTGG 58.029 33.333 0.00 0.00 37.27 3.77
184 185 8.971321 CCAAATCTTGAACTGTTTTCATAGTTG 58.029 33.333 0.00 0.00 37.27 3.16
185 186 8.912988 TCCAAATCTTGAACTGTTTTCATAGTT 58.087 29.630 0.00 0.00 39.67 2.24
186 187 8.463930 TCCAAATCTTGAACTGTTTTCATAGT 57.536 30.769 0.00 0.00 0.00 2.12
187 188 9.350357 CATCCAAATCTTGAACTGTTTTCATAG 57.650 33.333 0.00 0.00 0.00 2.23
188 189 7.814107 GCATCCAAATCTTGAACTGTTTTCATA 59.186 33.333 0.00 0.00 0.00 2.15
189 190 6.647895 GCATCCAAATCTTGAACTGTTTTCAT 59.352 34.615 0.00 0.00 0.00 2.57
190 191 5.984926 GCATCCAAATCTTGAACTGTTTTCA 59.015 36.000 0.00 0.00 0.00 2.69
191 192 5.984926 TGCATCCAAATCTTGAACTGTTTTC 59.015 36.000 0.00 0.00 0.00 2.29
192 193 5.916318 TGCATCCAAATCTTGAACTGTTTT 58.084 33.333 0.00 0.00 0.00 2.43
193 194 5.534207 TGCATCCAAATCTTGAACTGTTT 57.466 34.783 0.00 0.00 0.00 2.83
194 195 5.534207 TTGCATCCAAATCTTGAACTGTT 57.466 34.783 0.00 0.00 0.00 3.16
195 196 5.069516 ACTTTGCATCCAAATCTTGAACTGT 59.930 36.000 0.00 0.00 39.98 3.55
196 197 5.535333 ACTTTGCATCCAAATCTTGAACTG 58.465 37.500 0.00 0.00 39.98 3.16
197 198 5.796424 ACTTTGCATCCAAATCTTGAACT 57.204 34.783 0.00 0.00 39.98 3.01
198 199 6.849588 AAACTTTGCATCCAAATCTTGAAC 57.150 33.333 0.00 0.00 39.98 3.18
199 200 7.495901 TGTAAACTTTGCATCCAAATCTTGAA 58.504 30.769 0.00 0.00 39.98 2.69
200 201 7.048629 TGTAAACTTTGCATCCAAATCTTGA 57.951 32.000 0.00 0.00 39.98 3.02
201 202 7.599621 TCATGTAAACTTTGCATCCAAATCTTG 59.400 33.333 2.37 0.00 39.98 3.02
202 203 7.669427 TCATGTAAACTTTGCATCCAAATCTT 58.331 30.769 2.37 0.00 39.98 2.40
203 204 7.230849 TCATGTAAACTTTGCATCCAAATCT 57.769 32.000 2.37 0.00 39.98 2.40
204 205 9.585099 TTATCATGTAAACTTTGCATCCAAATC 57.415 29.630 2.37 0.00 39.98 2.17
205 206 9.941325 TTTATCATGTAAACTTTGCATCCAAAT 57.059 25.926 2.37 0.00 39.98 2.32
206 207 9.770097 TTTTATCATGTAAACTTTGCATCCAAA 57.230 25.926 2.37 1.97 38.56 3.28
207 208 9.202273 GTTTTATCATGTAAACTTTGCATCCAA 57.798 29.630 2.37 0.00 33.54 3.53
208 209 8.363390 TGTTTTATCATGTAAACTTTGCATCCA 58.637 29.630 16.08 0.00 33.54 3.41
209 210 8.755696 TGTTTTATCATGTAAACTTTGCATCC 57.244 30.769 16.08 0.00 33.54 3.51
235 236 9.915629 TGTTACAACATGTGACTTTTACTTTTT 57.084 25.926 0.00 0.00 37.69 1.94
236 237 9.915629 TTGTTACAACATGTGACTTTTACTTTT 57.084 25.926 0.00 0.00 37.69 2.27
237 238 9.567848 CTTGTTACAACATGTGACTTTTACTTT 57.432 29.630 0.00 0.00 37.69 2.66
238 239 8.736244 ACTTGTTACAACATGTGACTTTTACTT 58.264 29.630 11.53 0.00 43.15 2.24
239 240 8.276252 ACTTGTTACAACATGTGACTTTTACT 57.724 30.769 11.53 0.00 43.15 2.24
249 250 2.032799 CGTGCCACTTGTTACAACATGT 59.967 45.455 7.58 7.58 44.89 3.21
250 251 2.032799 ACGTGCCACTTGTTACAACATG 59.967 45.455 0.00 6.47 38.95 3.21
251 252 2.294074 ACGTGCCACTTGTTACAACAT 58.706 42.857 0.00 0.00 38.95 2.71
252 253 1.740297 ACGTGCCACTTGTTACAACA 58.260 45.000 0.00 0.00 37.08 3.33
253 254 4.448395 TGTATACGTGCCACTTGTTACAAC 59.552 41.667 0.00 0.00 0.00 3.32
254 255 4.629092 TGTATACGTGCCACTTGTTACAA 58.371 39.130 0.00 0.00 0.00 2.41
255 256 4.239304 CTGTATACGTGCCACTTGTTACA 58.761 43.478 0.00 0.00 0.00 2.41
256 257 4.090930 CACTGTATACGTGCCACTTGTTAC 59.909 45.833 12.60 0.00 0.00 2.50
257 258 4.239304 CACTGTATACGTGCCACTTGTTA 58.761 43.478 12.60 0.00 0.00 2.41
258 259 3.064207 CACTGTATACGTGCCACTTGTT 58.936 45.455 12.60 0.00 0.00 2.83
259 260 2.683968 CACTGTATACGTGCCACTTGT 58.316 47.619 12.60 0.00 0.00 3.16
267 268 2.470196 AGTAGCGCACTGTATACGTG 57.530 50.000 11.47 17.82 35.62 4.49
268 269 2.163010 ACAAGTAGCGCACTGTATACGT 59.837 45.455 11.47 0.00 37.63 3.57
269 270 2.782192 GACAAGTAGCGCACTGTATACG 59.218 50.000 11.47 0.00 37.63 3.06
270 271 2.782192 CGACAAGTAGCGCACTGTATAC 59.218 50.000 11.47 1.51 37.63 1.47
271 272 3.060978 CGACAAGTAGCGCACTGTATA 57.939 47.619 11.47 0.00 37.63 1.47
272 273 1.909376 CGACAAGTAGCGCACTGTAT 58.091 50.000 11.47 0.65 37.63 2.29
273 274 3.394800 CGACAAGTAGCGCACTGTA 57.605 52.632 11.47 0.00 37.63 2.74
274 275 4.245054 CGACAAGTAGCGCACTGT 57.755 55.556 11.47 6.80 37.63 3.55
280 281 0.666274 TGAGGTTGCGACAAGTAGCG 60.666 55.000 6.39 0.00 33.77 4.26
281 282 1.071605 CTGAGGTTGCGACAAGTAGC 58.928 55.000 6.39 0.00 0.00 3.58
282 283 2.724977 TCTGAGGTTGCGACAAGTAG 57.275 50.000 6.39 0.00 0.00 2.57
283 284 4.441495 CCATATCTGAGGTTGCGACAAGTA 60.441 45.833 6.39 0.00 0.00 2.24
284 285 3.525537 CATATCTGAGGTTGCGACAAGT 58.474 45.455 6.39 0.00 0.00 3.16
285 286 2.868583 CCATATCTGAGGTTGCGACAAG 59.131 50.000 6.39 0.43 0.00 3.16
286 287 2.419990 CCCATATCTGAGGTTGCGACAA 60.420 50.000 6.39 0.00 0.00 3.18
287 288 1.138859 CCCATATCTGAGGTTGCGACA 59.861 52.381 6.39 0.00 0.00 4.35
288 289 1.412710 TCCCATATCTGAGGTTGCGAC 59.587 52.381 0.00 0.00 0.00 5.19
289 290 1.688735 CTCCCATATCTGAGGTTGCGA 59.311 52.381 0.00 0.00 0.00 5.10
290 291 1.688735 TCTCCCATATCTGAGGTTGCG 59.311 52.381 0.00 0.00 0.00 4.85
291 292 3.582208 AGATCTCCCATATCTGAGGTTGC 59.418 47.826 0.00 0.00 32.44 4.17
292 293 5.822132 AAGATCTCCCATATCTGAGGTTG 57.178 43.478 0.00 0.00 33.95 3.77
293 294 5.455899 GCAAAGATCTCCCATATCTGAGGTT 60.456 44.000 0.00 0.00 33.95 3.50
294 295 4.041444 GCAAAGATCTCCCATATCTGAGGT 59.959 45.833 0.00 0.00 33.95 3.85
295 296 4.041321 TGCAAAGATCTCCCATATCTGAGG 59.959 45.833 0.00 0.00 33.95 3.86
296 297 5.224821 TGCAAAGATCTCCCATATCTGAG 57.775 43.478 0.00 0.00 33.95 3.35
297 298 5.635278 TTGCAAAGATCTCCCATATCTGA 57.365 39.130 0.00 0.00 33.95 3.27
298 299 6.060136 TCTTTGCAAAGATCTCCCATATCTG 58.940 40.000 32.86 7.58 39.95 2.90
299 300 6.257994 TCTTTGCAAAGATCTCCCATATCT 57.742 37.500 32.86 0.00 39.95 1.98
343 344 9.760077 AAAACGTTCTTATATTATGAGACGGAT 57.240 29.630 0.00 8.61 0.00 4.18
344 345 9.590451 AAAAACGTTCTTATATTATGAGACGGA 57.410 29.630 0.00 0.00 0.00 4.69
367 368 5.367352 TCCCTTGGTCTCACTAGTGTAAAAA 59.633 40.000 21.99 10.63 0.00 1.94
368 369 4.903049 TCCCTTGGTCTCACTAGTGTAAAA 59.097 41.667 21.99 10.02 0.00 1.52
369 370 4.485875 TCCCTTGGTCTCACTAGTGTAAA 58.514 43.478 21.99 6.63 0.00 2.01
370 371 4.087182 CTCCCTTGGTCTCACTAGTGTAA 58.913 47.826 21.99 9.08 0.00 2.41
371 372 3.075582 ACTCCCTTGGTCTCACTAGTGTA 59.924 47.826 21.99 9.43 0.00 2.90
372 373 2.158295 ACTCCCTTGGTCTCACTAGTGT 60.158 50.000 21.99 0.00 0.00 3.55
373 374 2.232452 CACTCCCTTGGTCTCACTAGTG 59.768 54.545 17.17 17.17 0.00 2.74
374 375 2.110188 TCACTCCCTTGGTCTCACTAGT 59.890 50.000 0.00 0.00 0.00 2.57
375 376 2.808919 TCACTCCCTTGGTCTCACTAG 58.191 52.381 0.00 0.00 0.00 2.57
376 377 2.992847 TCACTCCCTTGGTCTCACTA 57.007 50.000 0.00 0.00 0.00 2.74
377 378 2.334006 ATCACTCCCTTGGTCTCACT 57.666 50.000 0.00 0.00 0.00 3.41
378 379 3.515901 ACTAATCACTCCCTTGGTCTCAC 59.484 47.826 0.00 0.00 0.00 3.51
379 380 3.791320 ACTAATCACTCCCTTGGTCTCA 58.209 45.455 0.00 0.00 0.00 3.27
380 381 4.957327 AGTACTAATCACTCCCTTGGTCTC 59.043 45.833 0.00 0.00 0.00 3.36
381 382 4.949121 AGTACTAATCACTCCCTTGGTCT 58.051 43.478 0.00 0.00 0.00 3.85
382 383 5.678955 AAGTACTAATCACTCCCTTGGTC 57.321 43.478 0.00 0.00 0.00 4.02
383 384 5.337330 CGAAAGTACTAATCACTCCCTTGGT 60.337 44.000 0.00 0.00 0.00 3.67
384 385 5.105473 TCGAAAGTACTAATCACTCCCTTGG 60.105 44.000 0.00 0.00 0.00 3.61
385 386 5.805994 GTCGAAAGTACTAATCACTCCCTTG 59.194 44.000 0.00 0.00 0.00 3.61
386 387 5.479375 TGTCGAAAGTACTAATCACTCCCTT 59.521 40.000 0.00 0.00 0.00 3.95
387 388 5.014858 TGTCGAAAGTACTAATCACTCCCT 58.985 41.667 0.00 0.00 0.00 4.20
388 389 5.320549 TGTCGAAAGTACTAATCACTCCC 57.679 43.478 0.00 0.00 0.00 4.30
389 390 9.182933 GATTATGTCGAAAGTACTAATCACTCC 57.817 37.037 0.00 0.00 0.00 3.85
390 391 9.182933 GGATTATGTCGAAAGTACTAATCACTC 57.817 37.037 0.00 0.00 30.70 3.51
391 392 8.915036 AGGATTATGTCGAAAGTACTAATCACT 58.085 33.333 0.00 0.00 30.70 3.41
392 393 9.530633 AAGGATTATGTCGAAAGTACTAATCAC 57.469 33.333 0.00 0.95 30.70 3.06
393 394 9.529325 CAAGGATTATGTCGAAAGTACTAATCA 57.471 33.333 0.00 0.00 30.70 2.57
394 395 9.530633 ACAAGGATTATGTCGAAAGTACTAATC 57.469 33.333 0.00 0.00 0.00 1.75
395 396 9.886132 AACAAGGATTATGTCGAAAGTACTAAT 57.114 29.630 0.00 0.00 0.00 1.73
396 397 9.715121 AAACAAGGATTATGTCGAAAGTACTAA 57.285 29.630 0.00 0.00 0.00 2.24
397 398 9.715121 AAAACAAGGATTATGTCGAAAGTACTA 57.285 29.630 0.00 0.00 0.00 1.82
398 399 8.617290 AAAACAAGGATTATGTCGAAAGTACT 57.383 30.769 0.00 0.00 0.00 2.73
442 443 7.039293 GGACAAAGGGAGTATGTACCAATTTTT 60.039 37.037 0.00 0.00 0.00 1.94
443 444 6.436218 GGACAAAGGGAGTATGTACCAATTTT 59.564 38.462 0.00 0.00 0.00 1.82
444 445 5.949952 GGACAAAGGGAGTATGTACCAATTT 59.050 40.000 0.00 0.00 0.00 1.82
445 446 5.014755 TGGACAAAGGGAGTATGTACCAATT 59.985 40.000 0.00 0.00 0.00 2.32
446 447 4.538490 TGGACAAAGGGAGTATGTACCAAT 59.462 41.667 0.00 0.00 0.00 3.16
447 448 3.911260 TGGACAAAGGGAGTATGTACCAA 59.089 43.478 0.00 0.00 0.00 3.67
448 449 3.522759 TGGACAAAGGGAGTATGTACCA 58.477 45.455 0.00 0.00 0.00 3.25
449 450 4.772886 ATGGACAAAGGGAGTATGTACC 57.227 45.455 0.00 0.00 0.00 3.34
450 451 9.841295 TTATTTATGGACAAAGGGAGTATGTAC 57.159 33.333 0.00 0.00 0.00 2.90
452 453 8.557450 ACTTATTTATGGACAAAGGGAGTATGT 58.443 33.333 0.00 0.00 0.00 2.29
453 454 8.840321 CACTTATTTATGGACAAAGGGAGTATG 58.160 37.037 0.00 0.00 0.00 2.39
454 455 8.557450 ACACTTATTTATGGACAAAGGGAGTAT 58.443 33.333 0.00 0.00 0.00 2.12
455 456 7.924541 ACACTTATTTATGGACAAAGGGAGTA 58.075 34.615 0.00 0.00 0.00 2.59
456 457 6.790319 ACACTTATTTATGGACAAAGGGAGT 58.210 36.000 0.00 0.00 0.00 3.85
457 458 7.827236 TGTACACTTATTTATGGACAAAGGGAG 59.173 37.037 0.00 0.00 36.71 4.30
458 459 7.691213 TGTACACTTATTTATGGACAAAGGGA 58.309 34.615 0.00 0.00 36.71 4.20
459 460 7.931578 TGTACACTTATTTATGGACAAAGGG 57.068 36.000 0.00 0.00 36.71 3.95
464 465 9.899661 AGCTAAATGTACACTTATTTATGGACA 57.100 29.630 0.00 0.00 43.74 4.02
476 477 9.338622 ACTTAAGACAAAAGCTAAATGTACACT 57.661 29.630 10.09 0.00 0.00 3.55
477 478 9.595357 GACTTAAGACAAAAGCTAAATGTACAC 57.405 33.333 10.09 0.00 0.00 2.90
478 479 9.332502 TGACTTAAGACAAAAGCTAAATGTACA 57.667 29.630 10.09 0.00 0.00 2.90
603 604 9.613428 AGCAGCATTTATGACACTAAATTAGTA 57.387 29.630 5.23 0.00 37.23 1.82
604 605 8.511604 AGCAGCATTTATGACACTAAATTAGT 57.488 30.769 0.00 0.00 40.28 2.24
605 606 9.869844 GTAGCAGCATTTATGACACTAAATTAG 57.130 33.333 0.00 0.00 30.68 1.73
606 607 9.389755 TGTAGCAGCATTTATGACACTAAATTA 57.610 29.630 0.00 0.00 30.68 1.40
607 608 8.279970 TGTAGCAGCATTTATGACACTAAATT 57.720 30.769 0.00 0.00 30.68 1.82
608 609 7.864108 TGTAGCAGCATTTATGACACTAAAT 57.136 32.000 0.00 0.00 32.76 1.40
609 610 7.864108 ATGTAGCAGCATTTATGACACTAAA 57.136 32.000 0.00 0.00 0.00 1.85
610 611 7.864108 AATGTAGCAGCATTTATGACACTAA 57.136 32.000 0.00 0.00 35.76 2.24
611 612 7.864108 AAATGTAGCAGCATTTATGACACTA 57.136 32.000 14.22 0.00 44.40 2.74
612 613 6.764308 AAATGTAGCAGCATTTATGACACT 57.236 33.333 14.22 0.00 44.40 3.55
613 614 7.756722 AGAAAAATGTAGCAGCATTTATGACAC 59.243 33.333 15.57 7.10 45.17 3.67
614 615 7.829725 AGAAAAATGTAGCAGCATTTATGACA 58.170 30.769 15.57 0.00 45.17 3.58
615 616 9.956720 ATAGAAAAATGTAGCAGCATTTATGAC 57.043 29.630 15.57 9.47 45.17 3.06
622 623 9.793252 CAACTTTATAGAAAAATGTAGCAGCAT 57.207 29.630 0.00 0.00 0.00 3.79
623 624 8.243426 CCAACTTTATAGAAAAATGTAGCAGCA 58.757 33.333 0.00 0.00 0.00 4.41
624 625 7.220875 GCCAACTTTATAGAAAAATGTAGCAGC 59.779 37.037 0.00 0.00 0.00 5.25
625 626 8.243426 TGCCAACTTTATAGAAAAATGTAGCAG 58.757 33.333 0.00 0.00 0.00 4.24
626 627 8.116651 TGCCAACTTTATAGAAAAATGTAGCA 57.883 30.769 0.00 0.00 0.00 3.49
627 628 8.980143 TTGCCAACTTTATAGAAAAATGTAGC 57.020 30.769 0.00 0.00 0.00 3.58
630 631 9.830975 AACTTTGCCAACTTTATAGAAAAATGT 57.169 25.926 0.00 0.00 0.00 2.71
682 683 9.852784 TCCCTCCCTGAATAAATGTATATCTAA 57.147 33.333 0.00 0.00 0.00 2.10
683 684 9.494055 CTCCCTCCCTGAATAAATGTATATCTA 57.506 37.037 0.00 0.00 0.00 1.98
684 685 7.404396 CCTCCCTCCCTGAATAAATGTATATCT 59.596 40.741 0.00 0.00 0.00 1.98
685 686 7.403231 TCCTCCCTCCCTGAATAAATGTATATC 59.597 40.741 0.00 0.00 0.00 1.63
686 687 7.263901 TCCTCCCTCCCTGAATAAATGTATAT 58.736 38.462 0.00 0.00 0.00 0.86
687 688 6.639938 TCCTCCCTCCCTGAATAAATGTATA 58.360 40.000 0.00 0.00 0.00 1.47
688 689 5.486332 TCCTCCCTCCCTGAATAAATGTAT 58.514 41.667 0.00 0.00 0.00 2.29
689 690 4.903149 TCCTCCCTCCCTGAATAAATGTA 58.097 43.478 0.00 0.00 0.00 2.29
690 691 3.747852 TCCTCCCTCCCTGAATAAATGT 58.252 45.455 0.00 0.00 0.00 2.71
691 692 4.166919 ACTTCCTCCCTCCCTGAATAAATG 59.833 45.833 0.00 0.00 0.00 2.32
692 693 4.384465 ACTTCCTCCCTCCCTGAATAAAT 58.616 43.478 0.00 0.00 0.00 1.40
693 694 3.815507 ACTTCCTCCCTCCCTGAATAAA 58.184 45.455 0.00 0.00 0.00 1.40
694 695 3.508952 ACTTCCTCCCTCCCTGAATAA 57.491 47.619 0.00 0.00 0.00 1.40
695 696 4.852991 ATACTTCCTCCCTCCCTGAATA 57.147 45.455 0.00 0.00 0.00 1.75
696 697 3.734344 ATACTTCCTCCCTCCCTGAAT 57.266 47.619 0.00 0.00 0.00 2.57
697 698 3.273886 TGTATACTTCCTCCCTCCCTGAA 59.726 47.826 4.17 0.00 0.00 3.02
698 699 2.863238 TGTATACTTCCTCCCTCCCTGA 59.137 50.000 4.17 0.00 0.00 3.86
699 700 3.330126 TGTATACTTCCTCCCTCCCTG 57.670 52.381 4.17 0.00 0.00 4.45
700 701 3.863086 CATGTATACTTCCTCCCTCCCT 58.137 50.000 4.17 0.00 0.00 4.20
701 702 2.303311 GCATGTATACTTCCTCCCTCCC 59.697 54.545 4.17 0.00 0.00 4.30
702 703 2.972713 TGCATGTATACTTCCTCCCTCC 59.027 50.000 4.17 0.00 0.00 4.30
703 704 4.564406 CCATGCATGTATACTTCCTCCCTC 60.564 50.000 24.58 0.00 0.00 4.30
704 705 3.328931 CCATGCATGTATACTTCCTCCCT 59.671 47.826 24.58 0.00 0.00 4.20
705 706 3.560025 CCCATGCATGTATACTTCCTCCC 60.560 52.174 24.58 0.00 0.00 4.30
706 707 3.327757 TCCCATGCATGTATACTTCCTCC 59.672 47.826 24.58 0.00 0.00 4.30
707 708 4.623932 TCCCATGCATGTATACTTCCTC 57.376 45.455 24.58 0.00 0.00 3.71
708 709 4.202503 CCTTCCCATGCATGTATACTTCCT 60.203 45.833 24.58 0.00 0.00 3.36
709 710 4.074970 CCTTCCCATGCATGTATACTTCC 58.925 47.826 24.58 0.00 0.00 3.46
710 711 4.973168 TCCTTCCCATGCATGTATACTTC 58.027 43.478 24.58 0.00 0.00 3.01
711 712 5.133221 GTTCCTTCCCATGCATGTATACTT 58.867 41.667 24.58 0.00 0.00 2.24
712 713 4.718961 GTTCCTTCCCATGCATGTATACT 58.281 43.478 24.58 0.00 0.00 2.12
713 714 3.498397 CGTTCCTTCCCATGCATGTATAC 59.502 47.826 24.58 11.32 0.00 1.47
714 715 3.389656 TCGTTCCTTCCCATGCATGTATA 59.610 43.478 24.58 7.31 0.00 1.47
715 716 2.172505 TCGTTCCTTCCCATGCATGTAT 59.827 45.455 24.58 0.00 0.00 2.29
716 717 1.557371 TCGTTCCTTCCCATGCATGTA 59.443 47.619 24.58 10.24 0.00 2.29
742 743 3.573967 TCCATCCTTCTTTTGTTTGCCTC 59.426 43.478 0.00 0.00 0.00 4.70
748 749 4.459337 GGACGAATCCATCCTTCTTTTGTT 59.541 41.667 0.00 0.00 45.47 2.83
750 751 4.622701 GGACGAATCCATCCTTCTTTTG 57.377 45.455 0.00 0.00 45.47 2.44
776 779 8.947055 AAAAATTTCTTTCCATATGCGCTTAT 57.053 26.923 9.73 9.79 0.00 1.73
777 780 7.219917 CGAAAAATTTCTTTCCATATGCGCTTA 59.780 33.333 9.73 7.33 35.07 3.09
785 788 6.754193 ACAAGGCGAAAAATTTCTTTCCATA 58.246 32.000 4.54 0.00 35.07 2.74
797 800 1.457009 CCCGGGAACAAGGCGAAAAA 61.457 55.000 18.48 0.00 0.00 1.94
879 883 7.068962 TGGATGAAATCGGCGTATATATAGGAA 59.931 37.037 15.06 2.00 46.86 3.36
880 884 6.548251 TGGATGAAATCGGCGTATATATAGGA 59.452 38.462 15.06 1.94 46.86 2.94
911 918 2.774687 GGTTTCTTCTCCGGCTGTTAA 58.225 47.619 0.00 0.00 0.00 2.01
920 927 1.377333 CAGGGGCGGTTTCTTCTCC 60.377 63.158 0.00 0.00 0.00 3.71
948 956 0.664761 TGCACGTATACGGAGGCTAC 59.335 55.000 27.62 10.04 44.95 3.58
959 967 4.406648 TCTTTGGATCTGATGCACGTAT 57.593 40.909 11.60 0.00 0.00 3.06
1103 1117 4.519437 CGCTGGCGGAGATGCAGA 62.519 66.667 7.12 0.00 36.28 4.26
2218 2309 1.963338 GCAGCTCGCTTTGACCAGT 60.963 57.895 1.48 0.00 37.77 4.00
2242 2341 2.125952 CCTGTCGCAGCATCACGA 60.126 61.111 0.00 0.00 35.62 4.35
2663 2777 1.439353 CGGGCGCATAAAGTCTGCAT 61.439 55.000 10.83 0.00 39.64 3.96
2850 2972 2.800544 GCATACGGCAGTACCAATAGTG 59.199 50.000 0.00 0.00 43.97 2.74
2926 4228 3.559171 GCACATTTCTAGACCAGGGTTGA 60.559 47.826 0.00 0.00 0.00 3.18
2959 4261 6.092748 CCTTAGGCATTCAATTAACACACAC 58.907 40.000 0.00 0.00 0.00 3.82
2983 4285 3.922240 CACCATTTGCTATCAAACACAGC 59.078 43.478 0.00 0.00 44.11 4.40
2984 4286 5.375417 TCACCATTTGCTATCAAACACAG 57.625 39.130 0.00 0.00 44.11 3.66
2985 4287 5.781210 TTCACCATTTGCTATCAAACACA 57.219 34.783 0.00 0.00 44.11 3.72
2986 4288 8.755696 TTATTTCACCATTTGCTATCAAACAC 57.244 30.769 0.00 0.00 44.11 3.32
2987 4289 9.941325 ATTTATTTCACCATTTGCTATCAAACA 57.059 25.926 0.00 0.00 44.11 2.83
3016 4318 9.476202 GCAAAATTACTTCAGTTTTGGATACTT 57.524 29.630 10.61 0.00 41.03 2.24
3017 4319 8.088365 GGCAAAATTACTTCAGTTTTGGATACT 58.912 33.333 10.61 0.00 41.03 2.12
3018 4320 7.870445 TGGCAAAATTACTTCAGTTTTGGATAC 59.130 33.333 10.61 0.00 41.03 2.24
3019 4321 7.957002 TGGCAAAATTACTTCAGTTTTGGATA 58.043 30.769 10.61 0.00 41.03 2.59
3020 4322 6.825610 TGGCAAAATTACTTCAGTTTTGGAT 58.174 32.000 10.61 0.00 41.03 3.41
3021 4323 6.127196 ACTGGCAAAATTACTTCAGTTTTGGA 60.127 34.615 10.61 0.00 41.03 3.53
3022 4324 6.048509 ACTGGCAAAATTACTTCAGTTTTGG 58.951 36.000 10.61 0.00 41.03 3.28
3023 4325 7.382218 CCTACTGGCAAAATTACTTCAGTTTTG 59.618 37.037 8.87 5.66 42.65 2.44
3024 4326 7.069455 ACCTACTGGCAAAATTACTTCAGTTTT 59.931 33.333 8.87 0.00 36.87 2.43
3025 4327 6.549736 ACCTACTGGCAAAATTACTTCAGTTT 59.450 34.615 8.87 0.00 36.87 2.66
3026 4328 6.068670 ACCTACTGGCAAAATTACTTCAGTT 58.931 36.000 8.87 0.00 36.87 3.16
3027 4329 5.631119 ACCTACTGGCAAAATTACTTCAGT 58.369 37.500 0.00 0.00 38.71 3.41
3028 4330 7.552687 TCATACCTACTGGCAAAATTACTTCAG 59.447 37.037 0.00 0.00 36.63 3.02
3029 4331 7.398829 TCATACCTACTGGCAAAATTACTTCA 58.601 34.615 0.00 0.00 36.63 3.02
3030 4332 7.769044 TCTCATACCTACTGGCAAAATTACTTC 59.231 37.037 0.00 0.00 36.63 3.01
3031 4333 7.630082 TCTCATACCTACTGGCAAAATTACTT 58.370 34.615 0.00 0.00 36.63 2.24
3032 4334 7.195374 TCTCATACCTACTGGCAAAATTACT 57.805 36.000 0.00 0.00 36.63 2.24
3033 4335 8.989980 GTATCTCATACCTACTGGCAAAATTAC 58.010 37.037 0.00 0.00 36.63 1.89
3048 4350 7.041098 GTTGATGAAACCATGGTATCTCATACC 60.041 40.741 25.69 18.58 42.87 2.73
3049 4351 7.307396 CGTTGATGAAACCATGGTATCTCATAC 60.307 40.741 25.69 21.36 35.13 2.39
3050 4352 6.705825 CGTTGATGAAACCATGGTATCTCATA 59.294 38.462 25.69 15.18 35.13 2.15
3051 4353 5.528690 CGTTGATGAAACCATGGTATCTCAT 59.471 40.000 25.84 25.84 35.13 2.90
3052 4354 4.875536 CGTTGATGAAACCATGGTATCTCA 59.124 41.667 20.12 20.40 35.13 3.27
3053 4355 4.273480 CCGTTGATGAAACCATGGTATCTC 59.727 45.833 20.12 15.41 35.13 2.75
3054 4356 4.080582 TCCGTTGATGAAACCATGGTATCT 60.081 41.667 20.12 5.71 35.13 1.98
3055 4357 4.196193 TCCGTTGATGAAACCATGGTATC 58.804 43.478 20.12 17.79 35.13 2.24
3056 4358 4.229304 TCCGTTGATGAAACCATGGTAT 57.771 40.909 20.12 8.27 35.13 2.73
3057 4359 3.704800 TCCGTTGATGAAACCATGGTA 57.295 42.857 20.12 2.28 35.13 3.25
3058 4360 2.577606 TCCGTTGATGAAACCATGGT 57.422 45.000 13.00 13.00 35.13 3.55
3059 4361 3.932545 TTTCCGTTGATGAAACCATGG 57.067 42.857 11.19 11.19 35.13 3.66
3060 4362 4.808558 ACATTTCCGTTGATGAAACCATG 58.191 39.130 0.00 0.00 34.77 3.66
3061 4363 5.467035 AACATTTCCGTTGATGAAACCAT 57.533 34.783 0.00 0.00 34.77 3.55
3062 4364 4.927978 AACATTTCCGTTGATGAAACCA 57.072 36.364 0.00 0.00 34.77 3.67
3063 4365 6.183360 GCATTAACATTTCCGTTGATGAAACC 60.183 38.462 11.39 0.00 42.46 3.27
3064 4366 6.183360 GGCATTAACATTTCCGTTGATGAAAC 60.183 38.462 11.39 0.05 42.46 2.78
3065 4367 5.866633 GGCATTAACATTTCCGTTGATGAAA 59.133 36.000 11.39 0.00 42.46 2.69
3066 4368 5.406649 GGCATTAACATTTCCGTTGATGAA 58.593 37.500 11.39 0.00 42.46 2.57
3067 4369 4.142271 GGGCATTAACATTTCCGTTGATGA 60.142 41.667 11.39 0.00 42.46 2.92
3068 4370 4.111916 GGGCATTAACATTTCCGTTGATG 58.888 43.478 4.68 4.68 42.63 3.07
3069 4371 3.766591 TGGGCATTAACATTTCCGTTGAT 59.233 39.130 0.00 0.00 0.00 2.57
3070 4372 3.057174 GTGGGCATTAACATTTCCGTTGA 60.057 43.478 0.00 0.00 0.00 3.18
3071 4373 3.249917 GTGGGCATTAACATTTCCGTTG 58.750 45.455 0.00 0.00 0.00 4.10
3124 4426 3.308035 AGTACTGGACGGTGATGGATA 57.692 47.619 0.00 0.00 0.00 2.59
3179 4481 2.404215 CCTTGTTCTACGTGACACAGG 58.596 52.381 6.37 6.80 0.00 4.00
3193 4495 1.377987 ACACCACACACGCCTTGTT 60.378 52.632 0.00 0.00 35.67 2.83
3292 4596 1.608590 CCCTTGTGCGTGACTGAAAAT 59.391 47.619 0.00 0.00 0.00 1.82
3541 4847 6.389091 CCATGTACTATGCAAAAACACATGT 58.611 36.000 20.72 0.00 39.91 3.21
3668 4975 3.744942 CAGTTGAGAGAGTTGTCATGTGG 59.255 47.826 0.00 0.00 0.00 4.17
3751 5058 5.920193 AACTGCAGTTGCCATGTATAATT 57.080 34.783 30.66 1.28 41.18 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.