Multiple sequence alignment - TraesCS7A01G422900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G422900 chr7A 100.000 3206 0 0 1 3206 613630784 613633989 0.000000e+00 5921.0
1 TraesCS7A01G422900 chr7A 77.912 747 126 27 1973 2696 615328185 615328915 2.290000e-116 429.0
2 TraesCS7A01G422900 chr7D 95.506 2670 68 24 556 3206 533903931 533906567 0.000000e+00 4218.0
3 TraesCS7A01G422900 chr7D 78.400 750 122 27 1970 2696 535306705 535307437 4.880000e-123 451.0
4 TraesCS7A01G422900 chr7D 81.550 271 29 17 188 442 53536766 53536501 1.510000e-48 204.0
5 TraesCS7A01G422900 chr7D 74.611 386 79 11 77 446 545610936 545610554 5.540000e-33 152.0
6 TraesCS7A01G422900 chr7D 80.899 178 23 5 189 366 167561695 167561861 2.600000e-26 130.0
7 TraesCS7A01G422900 chr7B 92.891 2504 139 14 719 3206 574468930 574471410 0.000000e+00 3602.0
8 TraesCS7A01G422900 chr7B 79.890 363 58 12 1973 2332 575367442 575367792 5.310000e-63 252.0
9 TraesCS7A01G422900 chr7B 79.795 292 38 11 2422 2696 575368134 575368421 3.260000e-45 193.0
10 TraesCS7A01G422900 chr7B 82.877 146 21 4 302 446 40271399 40271541 9.340000e-26 128.0
11 TraesCS7A01G422900 chr7B 85.714 98 13 1 3109 3205 339246467 339246370 5.660000e-18 102.0
12 TraesCS7A01G422900 chr4D 78.164 403 79 6 48 446 64534539 64534142 6.870000e-62 248.0
13 TraesCS7A01G422900 chr4D 88.679 159 16 2 298 455 98930205 98930362 3.260000e-45 193.0
14 TraesCS7A01G422900 chr5D 82.129 263 42 3 185 446 361580701 361580959 1.500000e-53 220.0
15 TraesCS7A01G422900 chr5D 74.561 342 75 5 45 378 367424276 367423939 4.310000e-29 139.0
16 TraesCS7A01G422900 chr1D 80.866 277 36 4 187 446 204804187 204803911 5.420000e-48 202.0
17 TraesCS7A01G422900 chr1D 79.167 216 42 1 45 260 463316264 463316052 2.580000e-31 147.0
18 TraesCS7A01G422900 chr4A 81.148 244 31 5 298 527 683934494 683934736 7.060000e-42 182.0
19 TraesCS7A01G422900 chr4A 77.174 184 30 7 188 366 314693221 314693045 2.630000e-16 97.1
20 TraesCS7A01G422900 chr4A 85.000 60 7 2 2797 2855 681792788 681792846 3.450000e-05 60.2
21 TraesCS7A01G422900 chr3D 90.833 120 11 0 300 419 592595940 592596059 9.200000e-36 161.0
22 TraesCS7A01G422900 chr3D 85.000 100 9 5 3111 3204 65315969 65315870 2.630000e-16 97.1
23 TraesCS7A01G422900 chr5B 80.000 200 31 3 189 388 44202501 44202691 4.310000e-29 139.0
24 TraesCS7A01G422900 chr3B 80.198 202 26 7 188 379 418459477 418459674 4.310000e-29 139.0
25 TraesCS7A01G422900 chr3B 88.889 90 8 1 3114 3201 63116736 63116647 3.380000e-20 110.0
26 TraesCS7A01G422900 chr3B 87.629 97 9 3 3111 3204 108821743 108821647 3.380000e-20 110.0
27 TraesCS7A01G422900 chr1A 83.333 150 23 2 298 446 261251362 261251214 1.550000e-28 137.0
28 TraesCS7A01G422900 chr1A 100.000 30 0 0 2797 2826 110061065 110061036 4.470000e-04 56.5
29 TraesCS7A01G422900 chr6D 83.688 141 21 2 301 440 336517589 336517728 7.220000e-27 132.0
30 TraesCS7A01G422900 chr6D 88.889 45 5 0 605 649 454923937 454923893 4.470000e-04 56.5
31 TraesCS7A01G422900 chr3A 87.629 97 9 3 3111 3204 75965165 75965069 3.380000e-20 110.0
32 TraesCS7A01G422900 chr2D 77.725 211 24 15 189 382 631903117 631903321 1.220000e-19 108.0
33 TraesCS7A01G422900 chrUn 87.500 88 10 1 3114 3200 77060554 77060467 2.040000e-17 100.0
34 TraesCS7A01G422900 chrUn 100.000 30 0 0 2797 2826 202163553 202163524 4.470000e-04 56.5
35 TraesCS7A01G422900 chrUn 100.000 30 0 0 2797 2826 202180654 202180625 4.470000e-04 56.5
36 TraesCS7A01G422900 chrUn 100.000 30 0 0 2797 2826 202184737 202184708 4.470000e-04 56.5
37 TraesCS7A01G422900 chrUn 92.500 40 1 2 2788 2826 210163095 210163133 4.470000e-04 56.5
38 TraesCS7A01G422900 chr2A 90.141 71 6 1 555 625 777973882 777973951 1.220000e-14 91.6
39 TraesCS7A01G422900 chr2A 93.333 45 2 1 3112 3155 734255440 734255484 7.420000e-07 65.8
40 TraesCS7A01G422900 chr6B 100.000 32 0 0 2796 2827 579212908 579212939 3.450000e-05 60.2
41 TraesCS7A01G422900 chr4B 100.000 28 0 0 441 468 549919662 549919689 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G422900 chr7A 613630784 613633989 3205 False 5921.0 5921 100.0000 1 3206 1 chr7A.!!$F1 3205
1 TraesCS7A01G422900 chr7A 615328185 615328915 730 False 429.0 429 77.9120 1973 2696 1 chr7A.!!$F2 723
2 TraesCS7A01G422900 chr7D 533903931 533906567 2636 False 4218.0 4218 95.5060 556 3206 1 chr7D.!!$F2 2650
3 TraesCS7A01G422900 chr7D 535306705 535307437 732 False 451.0 451 78.4000 1970 2696 1 chr7D.!!$F3 726
4 TraesCS7A01G422900 chr7B 574468930 574471410 2480 False 3602.0 3602 92.8910 719 3206 1 chr7B.!!$F2 2487
5 TraesCS7A01G422900 chr7B 575367442 575368421 979 False 222.5 252 79.8425 1973 2696 2 chr7B.!!$F3 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.029300 CGCAATCAATAAGGCGTGGG 59.971 55.0 0.00 0.00 44.11 4.61 F
1181 1210 0.032117 ATGGACATCGAGGACCTGGA 60.032 55.0 18.65 8.83 0.00 3.86 F
1489 1520 1.015109 TCAGTAGTCTCGGACGATGC 58.985 55.0 0.00 0.00 37.67 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1813 0.743701 GAGCCGTAGAGACCGTCAGA 60.744 60.000 0.40 0.0 0.0 3.27 R
2022 2057 2.435059 GCCTGGGTTGAGCTCGTC 60.435 66.667 9.64 4.3 0.0 4.20 R
3024 3353 2.543777 ACTGGTAATGCTTGACACGT 57.456 45.000 0.00 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.154347 CAGCCGCCCTGACTCCTC 62.154 72.222 0.00 0.00 44.64 3.71
37 38 4.704103 AGCCGCCCTGACTCCTCA 62.704 66.667 0.00 0.00 0.00 3.86
38 39 3.706373 GCCGCCCTGACTCCTCAA 61.706 66.667 0.00 0.00 0.00 3.02
39 40 2.581354 CCGCCCTGACTCCTCAAG 59.419 66.667 0.00 0.00 0.00 3.02
40 41 1.984570 CCGCCCTGACTCCTCAAGA 60.985 63.158 0.00 0.00 0.00 3.02
41 42 1.544825 CCGCCCTGACTCCTCAAGAA 61.545 60.000 0.00 0.00 0.00 2.52
42 43 0.108424 CGCCCTGACTCCTCAAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
43 44 1.270907 GCCCTGACTCCTCAAGAAGA 58.729 55.000 0.00 0.00 0.00 2.87
44 45 1.836802 GCCCTGACTCCTCAAGAAGAT 59.163 52.381 0.00 0.00 0.00 2.40
45 46 2.158971 GCCCTGACTCCTCAAGAAGATC 60.159 54.545 0.00 0.00 0.00 2.75
46 47 2.100584 CCCTGACTCCTCAAGAAGATCG 59.899 54.545 0.00 0.00 0.00 3.69
47 48 2.757868 CCTGACTCCTCAAGAAGATCGT 59.242 50.000 0.00 0.00 0.00 3.73
48 49 3.181491 CCTGACTCCTCAAGAAGATCGTC 60.181 52.174 0.00 0.00 0.00 4.20
49 50 2.755655 TGACTCCTCAAGAAGATCGTCC 59.244 50.000 4.93 0.00 0.00 4.79
50 51 1.746220 ACTCCTCAAGAAGATCGTCCG 59.254 52.381 4.93 0.00 0.00 4.79
51 52 1.746220 CTCCTCAAGAAGATCGTCCGT 59.254 52.381 4.93 0.00 0.00 4.69
52 53 2.164624 CTCCTCAAGAAGATCGTCCGTT 59.835 50.000 4.93 0.00 0.00 4.44
53 54 3.349927 TCCTCAAGAAGATCGTCCGTTA 58.650 45.455 4.93 0.00 0.00 3.18
54 55 3.377485 TCCTCAAGAAGATCGTCCGTTAG 59.623 47.826 4.93 0.00 0.00 2.34
55 56 3.377485 CCTCAAGAAGATCGTCCGTTAGA 59.623 47.826 4.93 0.00 0.00 2.10
56 57 4.036971 CCTCAAGAAGATCGTCCGTTAGAT 59.963 45.833 4.93 0.00 0.00 1.98
57 58 5.171147 TCAAGAAGATCGTCCGTTAGATC 57.829 43.478 4.93 3.87 42.52 2.75
58 59 4.638865 TCAAGAAGATCGTCCGTTAGATCA 59.361 41.667 4.93 0.00 44.10 2.92
59 60 5.124936 TCAAGAAGATCGTCCGTTAGATCAA 59.875 40.000 4.93 0.00 44.10 2.57
60 61 5.176407 AGAAGATCGTCCGTTAGATCAAG 57.824 43.478 4.93 0.00 44.10 3.02
61 62 4.882427 AGAAGATCGTCCGTTAGATCAAGA 59.118 41.667 4.93 0.00 44.10 3.02
62 63 5.533154 AGAAGATCGTCCGTTAGATCAAGAT 59.467 40.000 4.93 0.00 44.10 2.40
63 64 6.711194 AGAAGATCGTCCGTTAGATCAAGATA 59.289 38.462 4.93 0.00 44.10 1.98
64 65 6.879276 AGATCGTCCGTTAGATCAAGATAA 57.121 37.500 11.87 0.00 44.10 1.75
65 66 7.455641 AGATCGTCCGTTAGATCAAGATAAT 57.544 36.000 11.87 0.00 44.10 1.28
66 67 7.887381 AGATCGTCCGTTAGATCAAGATAATT 58.113 34.615 11.87 0.00 44.10 1.40
67 68 9.011095 AGATCGTCCGTTAGATCAAGATAATTA 57.989 33.333 11.87 0.00 44.10 1.40
68 69 9.790389 GATCGTCCGTTAGATCAAGATAATTAT 57.210 33.333 0.00 0.00 41.97 1.28
69 70 8.965986 TCGTCCGTTAGATCAAGATAATTATG 57.034 34.615 1.78 0.00 0.00 1.90
70 71 8.027189 TCGTCCGTTAGATCAAGATAATTATGG 58.973 37.037 1.78 0.00 0.00 2.74
71 72 8.027189 CGTCCGTTAGATCAAGATAATTATGGA 58.973 37.037 1.78 0.00 0.00 3.41
72 73 9.360093 GTCCGTTAGATCAAGATAATTATGGAG 57.640 37.037 1.78 0.00 0.00 3.86
73 74 8.035394 TCCGTTAGATCAAGATAATTATGGAGC 58.965 37.037 1.78 1.08 0.00 4.70
74 75 7.009631 CCGTTAGATCAAGATAATTATGGAGCG 59.990 40.741 1.78 0.98 0.00 5.03
75 76 7.755373 CGTTAGATCAAGATAATTATGGAGCGA 59.245 37.037 1.78 0.00 0.00 4.93
76 77 9.593134 GTTAGATCAAGATAATTATGGAGCGAT 57.407 33.333 1.78 0.00 0.00 4.58
77 78 9.809096 TTAGATCAAGATAATTATGGAGCGATC 57.191 33.333 1.78 7.13 0.00 3.69
78 79 6.977502 AGATCAAGATAATTATGGAGCGATCG 59.022 38.462 11.69 11.69 32.71 3.69
79 80 4.864806 TCAAGATAATTATGGAGCGATCGC 59.135 41.667 32.15 32.15 42.33 4.58
91 92 0.855349 GCGATCGCTCTGTTACATGG 59.145 55.000 31.94 0.00 38.26 3.66
92 93 1.491670 CGATCGCTCTGTTACATGGG 58.508 55.000 0.26 0.00 0.00 4.00
93 94 1.221414 GATCGCTCTGTTACATGGGC 58.779 55.000 0.00 0.00 0.00 5.36
94 95 0.179045 ATCGCTCTGTTACATGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
95 96 1.819632 CGCTCTGTTACATGGGCCC 60.820 63.158 17.59 17.59 0.00 5.80
96 97 1.819632 GCTCTGTTACATGGGCCCG 60.820 63.158 19.37 6.14 0.00 6.13
97 98 1.602237 CTCTGTTACATGGGCCCGT 59.398 57.895 19.37 15.91 0.00 5.28
98 99 0.462047 CTCTGTTACATGGGCCCGTC 60.462 60.000 15.72 2.99 0.00 4.79
99 100 1.195442 TCTGTTACATGGGCCCGTCA 61.195 55.000 15.72 8.36 0.00 4.35
100 101 1.003112 TGTTACATGGGCCCGTCAC 60.003 57.895 15.72 11.98 0.00 3.67
101 102 1.747745 GTTACATGGGCCCGTCACC 60.748 63.158 15.72 0.00 0.00 4.02
102 103 3.318006 TTACATGGGCCCGTCACCG 62.318 63.158 15.72 5.36 0.00 4.94
128 129 4.838152 GGCGCGCATCAAGGAGGA 62.838 66.667 34.42 0.00 0.00 3.71
129 130 3.267860 GCGCGCATCAAGGAGGAG 61.268 66.667 29.10 0.00 0.00 3.69
130 131 2.185350 CGCGCATCAAGGAGGAGT 59.815 61.111 8.75 0.00 0.00 3.85
131 132 1.880340 CGCGCATCAAGGAGGAGTC 60.880 63.158 8.75 0.00 0.00 3.36
132 133 1.880340 GCGCATCAAGGAGGAGTCG 60.880 63.158 0.30 0.00 0.00 4.18
133 134 1.880340 CGCATCAAGGAGGAGTCGC 60.880 63.158 0.00 0.00 0.00 5.19
134 135 1.522580 GCATCAAGGAGGAGTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
135 136 1.900351 CATCAAGGAGGAGTCGCCA 59.100 57.895 0.00 0.00 40.02 5.69
136 137 0.467384 CATCAAGGAGGAGTCGCCAT 59.533 55.000 0.00 0.00 40.02 4.40
137 138 0.755686 ATCAAGGAGGAGTCGCCATC 59.244 55.000 0.00 0.00 40.02 3.51
138 139 1.144936 CAAGGAGGAGTCGCCATCC 59.855 63.158 0.00 0.00 40.02 3.51
139 140 2.066999 AAGGAGGAGTCGCCATCCC 61.067 63.158 0.00 0.00 40.02 3.85
140 141 3.551407 GGAGGAGTCGCCATCCCC 61.551 72.222 0.00 0.00 40.02 4.81
141 142 2.764128 GAGGAGTCGCCATCCCCA 60.764 66.667 0.00 0.00 40.02 4.96
142 143 3.083997 AGGAGTCGCCATCCCCAC 61.084 66.667 0.00 0.00 40.02 4.61
143 144 3.083997 GGAGTCGCCATCCCCACT 61.084 66.667 0.00 0.00 36.34 4.00
144 145 2.187946 GAGTCGCCATCCCCACTG 59.812 66.667 0.00 0.00 0.00 3.66
145 146 2.607750 AGTCGCCATCCCCACTGT 60.608 61.111 0.00 0.00 0.00 3.55
146 147 2.436646 GTCGCCATCCCCACTGTG 60.437 66.667 0.00 0.00 0.00 3.66
147 148 4.408821 TCGCCATCCCCACTGTGC 62.409 66.667 1.29 0.00 0.00 4.57
149 150 4.365111 GCCATCCCCACTGTGCCA 62.365 66.667 1.29 0.00 0.00 4.92
150 151 2.361610 CCATCCCCACTGTGCCAC 60.362 66.667 1.29 0.00 0.00 5.01
151 152 2.361610 CATCCCCACTGTGCCACC 60.362 66.667 1.29 0.00 0.00 4.61
152 153 2.858476 ATCCCCACTGTGCCACCA 60.858 61.111 1.29 0.00 0.00 4.17
153 154 3.210012 ATCCCCACTGTGCCACCAC 62.210 63.158 1.29 0.00 42.40 4.16
155 156 2.906897 CCCACTGTGCCACCACAC 60.907 66.667 1.29 0.00 46.51 3.82
156 157 3.279116 CCACTGTGCCACCACACG 61.279 66.667 1.29 0.00 46.51 4.49
157 158 2.203001 CACTGTGCCACCACACGA 60.203 61.111 0.00 0.00 46.51 4.35
158 159 1.817520 CACTGTGCCACCACACGAA 60.818 57.895 0.00 0.00 46.51 3.85
159 160 1.523711 ACTGTGCCACCACACGAAG 60.524 57.895 0.00 0.00 46.51 3.79
160 161 2.896801 CTGTGCCACCACACGAAGC 61.897 63.158 0.00 0.00 46.51 3.86
161 162 4.012895 GTGCCACCACACGAAGCG 62.013 66.667 0.00 0.00 41.67 4.68
162 163 4.539083 TGCCACCACACGAAGCGT 62.539 61.111 0.00 0.00 42.36 5.07
177 178 3.823402 CGTGAGCTAGCGTCCCTA 58.177 61.111 9.55 0.00 0.00 3.53
178 179 1.355916 CGTGAGCTAGCGTCCCTAC 59.644 63.158 9.55 2.89 0.00 3.18
179 180 1.096386 CGTGAGCTAGCGTCCCTACT 61.096 60.000 9.55 0.00 0.00 2.57
180 181 0.664224 GTGAGCTAGCGTCCCTACTC 59.336 60.000 9.55 0.00 0.00 2.59
181 182 0.465824 TGAGCTAGCGTCCCTACTCC 60.466 60.000 9.55 0.00 0.00 3.85
182 183 0.465824 GAGCTAGCGTCCCTACTCCA 60.466 60.000 9.55 0.00 0.00 3.86
183 184 0.186386 AGCTAGCGTCCCTACTCCAT 59.814 55.000 9.55 0.00 0.00 3.41
184 185 0.599060 GCTAGCGTCCCTACTCCATC 59.401 60.000 0.00 0.00 0.00 3.51
185 186 1.249407 CTAGCGTCCCTACTCCATCC 58.751 60.000 0.00 0.00 0.00 3.51
186 187 0.851469 TAGCGTCCCTACTCCATCCT 59.149 55.000 0.00 0.00 0.00 3.24
187 188 0.757188 AGCGTCCCTACTCCATCCTG 60.757 60.000 0.00 0.00 0.00 3.86
188 189 1.043673 GCGTCCCTACTCCATCCTGT 61.044 60.000 0.00 0.00 0.00 4.00
189 190 0.747255 CGTCCCTACTCCATCCTGTG 59.253 60.000 0.00 0.00 0.00 3.66
190 191 1.685180 CGTCCCTACTCCATCCTGTGA 60.685 57.143 0.00 0.00 0.00 3.58
191 192 2.467880 GTCCCTACTCCATCCTGTGAA 58.532 52.381 0.00 0.00 0.00 3.18
192 193 2.432510 GTCCCTACTCCATCCTGTGAAG 59.567 54.545 0.00 0.00 0.00 3.02
193 194 1.765314 CCCTACTCCATCCTGTGAAGG 59.235 57.143 0.00 0.00 0.00 3.46
194 195 2.626950 CCCTACTCCATCCTGTGAAGGA 60.627 54.545 0.00 0.00 42.91 3.36
198 199 1.871418 TCCATCCTGTGAAGGAGGAG 58.129 55.000 7.96 0.00 43.02 3.69
199 200 0.179936 CCATCCTGTGAAGGAGGAGC 59.820 60.000 7.96 0.00 43.02 4.70
200 201 0.179936 CATCCTGTGAAGGAGGAGCC 59.820 60.000 0.09 0.00 43.02 4.70
201 202 1.333636 ATCCTGTGAAGGAGGAGCCG 61.334 60.000 0.39 0.00 43.02 5.52
202 203 2.581354 CTGTGAAGGAGGAGCCGG 59.419 66.667 0.00 0.00 43.43 6.13
203 204 3.672295 CTGTGAAGGAGGAGCCGGC 62.672 68.421 21.89 21.89 43.43 6.13
204 205 4.475135 GTGAAGGAGGAGCCGGCC 62.475 72.222 26.15 15.07 43.43 6.13
205 206 4.722535 TGAAGGAGGAGCCGGCCT 62.723 66.667 26.15 14.98 43.43 5.19
256 257 4.452733 GACGCCGGGTCAAGGAGG 62.453 72.222 15.65 0.00 45.36 4.30
258 259 4.148825 CGCCGGGTCAAGGAGGAG 62.149 72.222 2.18 0.00 0.00 3.69
259 260 4.475135 GCCGGGTCAAGGAGGAGC 62.475 72.222 2.18 0.00 34.62 4.70
262 263 2.683933 GGGTCAAGGAGGAGCCGA 60.684 66.667 0.00 0.00 44.63 5.54
263 264 2.579738 GGTCAAGGAGGAGCCGAC 59.420 66.667 0.00 0.00 43.43 4.79
264 265 2.182030 GTCAAGGAGGAGCCGACG 59.818 66.667 0.00 0.00 43.43 5.12
265 266 2.282958 TCAAGGAGGAGCCGACGT 60.283 61.111 0.00 0.00 43.43 4.34
266 267 1.001764 TCAAGGAGGAGCCGACGTA 60.002 57.895 0.00 0.00 43.43 3.57
267 268 1.139095 CAAGGAGGAGCCGACGTAC 59.861 63.158 0.00 0.00 43.43 3.67
268 269 2.050934 AAGGAGGAGCCGACGTACC 61.051 63.158 0.00 0.00 43.43 3.34
269 270 3.525545 GGAGGAGCCGACGTACCC 61.526 72.222 0.00 0.00 0.00 3.69
270 271 3.885521 GAGGAGCCGACGTACCCG 61.886 72.222 0.00 0.00 40.83 5.28
273 274 4.849329 GAGCCGACGTACCCGCTG 62.849 72.222 0.13 0.00 37.70 5.18
277 278 4.710695 CGACGTACCCGCTGTGCA 62.711 66.667 0.00 0.00 37.70 4.57
278 279 2.809601 GACGTACCCGCTGTGCAG 60.810 66.667 0.00 0.00 37.70 4.41
279 280 3.569049 GACGTACCCGCTGTGCAGT 62.569 63.158 0.00 0.00 37.70 4.40
280 281 2.809601 CGTACCCGCTGTGCAGTC 60.810 66.667 0.00 0.00 0.00 3.51
281 282 2.809601 GTACCCGCTGTGCAGTCG 60.810 66.667 0.00 5.31 0.00 4.18
282 283 3.299977 TACCCGCTGTGCAGTCGT 61.300 61.111 12.30 4.95 0.00 4.34
283 284 2.863346 TACCCGCTGTGCAGTCGTT 61.863 57.895 12.30 4.90 0.00 3.85
284 285 1.525718 TACCCGCTGTGCAGTCGTTA 61.526 55.000 12.30 4.24 0.00 3.18
285 286 1.447838 CCCGCTGTGCAGTCGTTAT 60.448 57.895 12.30 0.00 0.00 1.89
286 287 1.695893 CCCGCTGTGCAGTCGTTATG 61.696 60.000 12.30 0.00 0.00 1.90
287 288 1.695893 CCGCTGTGCAGTCGTTATGG 61.696 60.000 12.30 0.00 0.00 2.74
288 289 1.425428 GCTGTGCAGTCGTTATGGC 59.575 57.895 0.00 0.00 0.00 4.40
289 290 1.982073 GCTGTGCAGTCGTTATGGCC 61.982 60.000 0.00 0.00 0.00 5.36
290 291 1.695893 CTGTGCAGTCGTTATGGCCG 61.696 60.000 0.00 0.00 0.00 6.13
291 292 2.817834 TGCAGTCGTTATGGCCGC 60.818 61.111 0.00 0.00 0.00 6.53
292 293 2.817834 GCAGTCGTTATGGCCGCA 60.818 61.111 0.00 0.00 0.00 5.69
293 294 2.180204 GCAGTCGTTATGGCCGCAT 61.180 57.895 0.00 0.00 0.00 4.73
294 295 1.643292 CAGTCGTTATGGCCGCATG 59.357 57.895 0.00 0.00 0.00 4.06
295 296 1.523711 AGTCGTTATGGCCGCATGG 60.524 57.895 0.00 0.00 38.77 3.66
296 297 1.522806 GTCGTTATGGCCGCATGGA 60.523 57.895 0.00 0.00 37.49 3.41
328 329 2.492090 CTCGCCGTCAAGGAGGAG 59.508 66.667 0.00 0.00 45.00 3.69
329 330 2.282958 TCGCCGTCAAGGAGGAGT 60.283 61.111 0.00 0.00 45.00 3.85
330 331 1.878656 CTCGCCGTCAAGGAGGAGTT 61.879 60.000 0.00 0.00 45.00 3.01
331 332 1.738099 CGCCGTCAAGGAGGAGTTG 60.738 63.158 0.00 0.00 45.00 3.16
332 333 2.035442 GCCGTCAAGGAGGAGTTGC 61.035 63.158 0.00 0.00 45.00 4.17
333 334 1.674057 CCGTCAAGGAGGAGTTGCT 59.326 57.895 0.00 0.00 45.00 3.91
334 335 0.671781 CCGTCAAGGAGGAGTTGCTG 60.672 60.000 0.00 0.00 45.00 4.41
335 336 1.294659 CGTCAAGGAGGAGTTGCTGC 61.295 60.000 0.00 0.00 0.00 5.25
336 337 0.957888 GTCAAGGAGGAGTTGCTGCC 60.958 60.000 0.00 0.00 0.00 4.85
337 338 1.676967 CAAGGAGGAGTTGCTGCCC 60.677 63.158 0.00 0.00 0.00 5.36
338 339 3.259633 AAGGAGGAGTTGCTGCCCG 62.260 63.158 0.00 0.00 0.00 6.13
349 350 3.557207 GCTGCCCGCAATCAATAAG 57.443 52.632 0.00 0.00 38.92 1.73
350 351 0.031178 GCTGCCCGCAATCAATAAGG 59.969 55.000 0.00 0.00 38.92 2.69
351 352 0.031178 CTGCCCGCAATCAATAAGGC 59.969 55.000 0.00 0.00 40.87 4.35
355 356 3.532138 CGCAATCAATAAGGCGTGG 57.468 52.632 0.00 0.00 44.11 4.94
356 357 0.029300 CGCAATCAATAAGGCGTGGG 59.971 55.000 0.00 0.00 44.11 4.61
357 358 0.385390 GCAATCAATAAGGCGTGGGG 59.615 55.000 0.00 0.00 0.00 4.96
358 359 0.385390 CAATCAATAAGGCGTGGGGC 59.615 55.000 0.00 0.00 42.51 5.80
373 374 3.851128 GGCCGCCTCCTCCACTAC 61.851 72.222 0.71 0.00 0.00 2.73
374 375 3.851128 GCCGCCTCCTCCACTACC 61.851 72.222 0.00 0.00 0.00 3.18
375 376 2.042843 CCGCCTCCTCCACTACCT 60.043 66.667 0.00 0.00 0.00 3.08
376 377 2.128507 CCGCCTCCTCCACTACCTC 61.129 68.421 0.00 0.00 0.00 3.85
377 378 2.482333 CGCCTCCTCCACTACCTCG 61.482 68.421 0.00 0.00 0.00 4.63
378 379 1.076923 GCCTCCTCCACTACCTCGA 60.077 63.158 0.00 0.00 0.00 4.04
379 380 0.683504 GCCTCCTCCACTACCTCGAA 60.684 60.000 0.00 0.00 0.00 3.71
380 381 1.394618 CCTCCTCCACTACCTCGAAG 58.605 60.000 0.00 0.00 0.00 3.79
381 382 1.394618 CTCCTCCACTACCTCGAAGG 58.605 60.000 0.00 0.00 42.49 3.46
382 383 0.997363 TCCTCCACTACCTCGAAGGA 59.003 55.000 7.76 1.31 37.67 3.36
383 384 1.064611 TCCTCCACTACCTCGAAGGAG 60.065 57.143 7.76 0.00 44.26 3.69
391 392 4.808649 CTCGAAGGAGGCGGTTAC 57.191 61.111 0.00 0.00 36.61 2.50
392 393 1.226603 CTCGAAGGAGGCGGTTACG 60.227 63.158 0.00 0.00 44.63 3.18
393 394 2.202703 CGAAGGAGGCGGTTACGG 60.203 66.667 0.00 0.00 41.36 4.02
422 423 4.070552 GCTTGAGGGCCGTCGTCT 62.071 66.667 19.99 0.00 0.00 4.18
423 424 2.182030 CTTGAGGGCCGTCGTCTC 59.818 66.667 19.99 9.79 0.00 3.36
424 425 3.358076 CTTGAGGGCCGTCGTCTCC 62.358 68.421 19.99 0.00 0.00 3.71
425 426 4.671590 TGAGGGCCGTCGTCTCCA 62.672 66.667 19.99 0.00 0.00 3.86
426 427 3.379445 GAGGGCCGTCGTCTCCAA 61.379 66.667 10.16 0.00 0.00 3.53
427 428 3.358076 GAGGGCCGTCGTCTCCAAG 62.358 68.421 10.16 0.00 0.00 3.61
428 429 4.452733 GGGCCGTCGTCTCCAAGG 62.453 72.222 0.00 0.00 0.00 3.61
431 432 4.796231 CCGTCGTCTCCAAGGCGG 62.796 72.222 0.70 0.00 44.63 6.13
432 433 3.744719 CGTCGTCTCCAAGGCGGA 61.745 66.667 0.70 0.00 44.63 5.54
456 457 2.505557 GGCGAGGTACAACCGACG 60.506 66.667 11.99 11.99 44.90 5.12
458 459 2.256158 CGAGGTACAACCGACGCA 59.744 61.111 0.00 0.00 44.90 5.24
459 460 1.372004 CGAGGTACAACCGACGCAA 60.372 57.895 0.00 0.00 44.90 4.85
460 461 0.734942 CGAGGTACAACCGACGCAAT 60.735 55.000 0.00 0.00 44.90 3.56
461 462 0.719465 GAGGTACAACCGACGCAATG 59.281 55.000 0.00 0.00 44.90 2.82
462 463 1.133869 GGTACAACCGACGCAATGC 59.866 57.895 0.00 0.00 0.00 3.56
463 464 1.133869 GTACAACCGACGCAATGCC 59.866 57.895 0.00 0.00 0.00 4.40
464 465 2.384309 TACAACCGACGCAATGCCG 61.384 57.895 0.00 0.00 0.00 5.69
465 466 2.766875 TACAACCGACGCAATGCCGA 62.767 55.000 5.50 0.00 0.00 5.54
466 467 2.435938 AACCGACGCAATGCCGAT 60.436 55.556 5.50 0.00 0.00 4.18
467 468 2.461110 AACCGACGCAATGCCGATC 61.461 57.895 5.50 0.00 0.00 3.69
468 469 2.889988 CCGACGCAATGCCGATCA 60.890 61.111 5.50 0.00 0.00 2.92
469 470 2.246739 CCGACGCAATGCCGATCAT 61.247 57.895 5.50 0.00 36.87 2.45
470 471 1.202568 CGACGCAATGCCGATCATC 59.797 57.895 0.00 0.00 33.40 2.92
471 472 1.489881 CGACGCAATGCCGATCATCA 61.490 55.000 0.00 0.00 33.40 3.07
472 473 0.657312 GACGCAATGCCGATCATCAA 59.343 50.000 0.00 0.00 33.40 2.57
473 474 0.659427 ACGCAATGCCGATCATCAAG 59.341 50.000 0.00 0.00 33.40 3.02
474 475 0.939419 CGCAATGCCGATCATCAAGA 59.061 50.000 0.00 0.00 33.40 3.02
475 476 1.070108 CGCAATGCCGATCATCAAGAG 60.070 52.381 0.00 0.00 33.40 2.85
476 477 1.945394 GCAATGCCGATCATCAAGAGT 59.055 47.619 0.00 0.00 33.40 3.24
477 478 2.286831 GCAATGCCGATCATCAAGAGTG 60.287 50.000 0.00 0.00 33.40 3.51
478 479 3.200483 CAATGCCGATCATCAAGAGTGA 58.800 45.455 0.00 0.00 38.41 3.41
479 480 2.299993 TGCCGATCATCAAGAGTGAC 57.700 50.000 0.00 0.00 36.31 3.67
480 481 1.203928 GCCGATCATCAAGAGTGACG 58.796 55.000 0.00 0.00 36.31 4.35
481 482 1.469940 GCCGATCATCAAGAGTGACGT 60.470 52.381 0.00 0.00 36.31 4.34
482 483 2.188524 CCGATCATCAAGAGTGACGTG 58.811 52.381 0.00 0.00 36.31 4.49
483 484 2.188524 CGATCATCAAGAGTGACGTGG 58.811 52.381 0.00 0.00 36.31 4.94
484 485 1.929836 GATCATCAAGAGTGACGTGGC 59.070 52.381 0.00 0.00 36.31 5.01
485 486 0.388520 TCATCAAGAGTGACGTGGCG 60.389 55.000 0.00 0.00 36.31 5.69
486 487 1.738099 ATCAAGAGTGACGTGGCGC 60.738 57.895 0.00 0.00 36.31 6.53
487 488 3.414700 CAAGAGTGACGTGGCGCC 61.415 66.667 22.73 22.73 0.00 6.53
488 489 3.923864 AAGAGTGACGTGGCGCCA 61.924 61.111 29.03 29.03 0.00 5.69
489 490 3.865929 AAGAGTGACGTGGCGCCAG 62.866 63.158 33.73 25.38 0.00 4.85
490 491 4.357947 GAGTGACGTGGCGCCAGA 62.358 66.667 33.73 11.74 0.00 3.86
491 492 4.664677 AGTGACGTGGCGCCAGAC 62.665 66.667 33.73 23.07 0.00 3.51
492 493 4.664677 GTGACGTGGCGCCAGACT 62.665 66.667 33.73 15.56 0.00 3.24
493 494 4.662961 TGACGTGGCGCCAGACTG 62.663 66.667 33.73 22.11 0.00 3.51
494 495 4.664677 GACGTGGCGCCAGACTGT 62.665 66.667 33.73 25.35 0.00 3.55
495 496 4.969196 ACGTGGCGCCAGACTGTG 62.969 66.667 33.73 17.56 0.00 3.66
496 497 4.969196 CGTGGCGCCAGACTGTGT 62.969 66.667 33.73 0.00 0.00 3.72
497 498 3.044305 GTGGCGCCAGACTGTGTC 61.044 66.667 33.73 12.14 0.00 3.67
498 499 4.314440 TGGCGCCAGACTGTGTCC 62.314 66.667 29.03 0.00 32.18 4.02
501 502 4.662961 CGCCAGACTGTGTCCGCA 62.663 66.667 0.93 0.00 32.18 5.69
502 503 2.280797 GCCAGACTGTGTCCGCAA 60.281 61.111 0.93 0.00 32.18 4.85
503 504 2.607892 GCCAGACTGTGTCCGCAAC 61.608 63.158 0.93 0.00 32.18 4.17
504 505 2.310233 CCAGACTGTGTCCGCAACG 61.310 63.158 0.93 0.00 32.18 4.10
505 506 1.299850 CAGACTGTGTCCGCAACGA 60.300 57.895 0.00 0.00 32.18 3.85
506 507 1.299926 AGACTGTGTCCGCAACGAC 60.300 57.895 0.00 0.00 32.18 4.34
507 508 2.279918 ACTGTGTCCGCAACGACC 60.280 61.111 0.00 0.00 31.35 4.79
508 509 3.041940 CTGTGTCCGCAACGACCC 61.042 66.667 0.00 0.00 31.35 4.46
509 510 3.515316 CTGTGTCCGCAACGACCCT 62.515 63.158 0.00 0.00 31.35 4.34
510 511 3.041940 GTGTCCGCAACGACCCTG 61.042 66.667 0.00 0.00 31.35 4.45
511 512 3.228017 TGTCCGCAACGACCCTGA 61.228 61.111 0.00 0.00 31.35 3.86
512 513 2.737376 GTCCGCAACGACCCTGAC 60.737 66.667 0.00 0.00 0.00 3.51
513 514 3.998672 TCCGCAACGACCCTGACC 61.999 66.667 0.00 0.00 0.00 4.02
514 515 4.003788 CCGCAACGACCCTGACCT 62.004 66.667 0.00 0.00 0.00 3.85
515 516 2.432628 CGCAACGACCCTGACCTC 60.433 66.667 0.00 0.00 0.00 3.85
516 517 2.432628 GCAACGACCCTGACCTCG 60.433 66.667 0.00 0.00 35.96 4.63
517 518 3.048602 CAACGACCCTGACCTCGT 58.951 61.111 0.00 0.00 44.89 4.18
518 519 1.080705 CAACGACCCTGACCTCGTC 60.081 63.158 0.00 0.00 42.21 4.20
520 521 4.477975 CGACCCTGACCTCGTCGC 62.478 72.222 0.00 0.00 42.37 5.19
521 522 4.131088 GACCCTGACCTCGTCGCC 62.131 72.222 0.00 0.00 34.95 5.54
536 537 4.760047 GCCGCGTGACCATCCAGT 62.760 66.667 4.92 0.00 0.00 4.00
537 538 2.047274 CCGCGTGACCATCCAGTT 60.047 61.111 4.92 0.00 0.00 3.16
538 539 1.671054 CCGCGTGACCATCCAGTTT 60.671 57.895 4.92 0.00 0.00 2.66
539 540 1.635663 CCGCGTGACCATCCAGTTTC 61.636 60.000 4.92 0.00 0.00 2.78
540 541 0.948623 CGCGTGACCATCCAGTTTCA 60.949 55.000 0.00 0.00 0.00 2.69
541 542 1.234821 GCGTGACCATCCAGTTTCAA 58.765 50.000 0.00 0.00 0.00 2.69
542 543 1.069227 GCGTGACCATCCAGTTTCAAC 60.069 52.381 0.00 0.00 0.00 3.18
543 544 2.494059 CGTGACCATCCAGTTTCAACT 58.506 47.619 0.00 0.00 40.60 3.16
544 545 2.878406 CGTGACCATCCAGTTTCAACTT 59.122 45.455 0.00 0.00 37.08 2.66
545 546 3.058914 CGTGACCATCCAGTTTCAACTTC 60.059 47.826 0.00 0.00 37.08 3.01
546 547 3.882888 GTGACCATCCAGTTTCAACTTCA 59.117 43.478 0.00 0.00 37.08 3.02
547 548 4.023707 GTGACCATCCAGTTTCAACTTCAG 60.024 45.833 0.00 0.00 37.08 3.02
548 549 4.137543 GACCATCCAGTTTCAACTTCAGT 58.862 43.478 0.00 0.00 37.08 3.41
549 550 4.536765 ACCATCCAGTTTCAACTTCAGTT 58.463 39.130 0.00 0.00 37.08 3.16
550 551 5.690865 ACCATCCAGTTTCAACTTCAGTTA 58.309 37.500 0.00 0.00 37.08 2.24
551 552 5.765182 ACCATCCAGTTTCAACTTCAGTTAG 59.235 40.000 0.00 0.00 37.08 2.34
552 553 5.765182 CCATCCAGTTTCAACTTCAGTTAGT 59.235 40.000 0.00 0.00 37.08 2.24
553 554 6.263168 CCATCCAGTTTCAACTTCAGTTAGTT 59.737 38.462 0.00 0.00 38.87 2.24
554 555 7.201821 CCATCCAGTTTCAACTTCAGTTAGTTT 60.202 37.037 0.00 0.00 36.24 2.66
555 556 7.083875 TCCAGTTTCAACTTCAGTTAGTTTG 57.916 36.000 0.00 0.00 36.24 2.93
556 557 6.882140 TCCAGTTTCAACTTCAGTTAGTTTGA 59.118 34.615 0.00 0.00 36.24 2.69
557 558 7.392113 TCCAGTTTCAACTTCAGTTAGTTTGAA 59.608 33.333 0.00 0.00 36.24 2.69
558 559 8.026607 CCAGTTTCAACTTCAGTTAGTTTGAAA 58.973 33.333 4.17 4.17 36.24 2.69
559 560 9.573133 CAGTTTCAACTTCAGTTAGTTTGAAAT 57.427 29.630 10.12 0.09 37.41 2.17
560 561 9.788960 AGTTTCAACTTCAGTTAGTTTGAAATC 57.211 29.630 10.12 5.73 37.41 2.17
561 562 9.020813 GTTTCAACTTCAGTTAGTTTGAAATCC 57.979 33.333 10.12 0.00 37.41 3.01
562 563 6.954944 TCAACTTCAGTTAGTTTGAAATCCG 58.045 36.000 0.00 0.00 36.24 4.18
563 564 5.358298 ACTTCAGTTAGTTTGAAATCCGC 57.642 39.130 0.00 0.00 34.41 5.54
575 576 0.824182 AAATCCGCCCGGTTTGAACA 60.824 50.000 6.61 0.00 36.47 3.18
587 588 3.728718 CGGTTTGAACAAATTTCGTCCAG 59.271 43.478 3.34 0.00 32.36 3.86
598 599 7.540299 ACAAATTTCGTCCAGTTAGTTTGAAA 58.460 30.769 0.00 0.00 0.00 2.69
599 600 8.194769 ACAAATTTCGTCCAGTTAGTTTGAAAT 58.805 29.630 0.00 0.00 36.45 2.17
600 601 9.030301 CAAATTTCGTCCAGTTAGTTTGAAATT 57.970 29.630 4.66 4.66 42.85 1.82
612 613 3.829601 AGTTTGAAATTGTTGGCCGGATA 59.170 39.130 5.05 0.00 0.00 2.59
640 641 1.033746 CAGCATTGGATGACGGCCTT 61.034 55.000 0.00 0.00 30.05 4.35
647 648 1.162800 GGATGACGGCCTTCTGCATC 61.163 60.000 11.01 10.42 43.89 3.91
682 683 2.167662 GGTCCCCGTCATTGAAAATGT 58.832 47.619 0.26 0.00 0.00 2.71
684 685 2.163613 GTCCCCGTCATTGAAAATGTCC 59.836 50.000 0.26 0.00 0.00 4.02
765 766 4.471908 ACATGCGCGCTCCATCCA 62.472 61.111 33.29 10.54 0.00 3.41
917 923 0.762418 TCCACAGTCCACACCGAAAT 59.238 50.000 0.00 0.00 0.00 2.17
1181 1210 0.032117 ATGGACATCGAGGACCTGGA 60.032 55.000 18.65 8.83 0.00 3.86
1335 1364 2.562876 GGATCCGGCGGACTCTACC 61.563 68.421 33.71 23.41 32.98 3.18
1373 1402 1.638388 CGCAACACGCTCACCATGAT 61.638 55.000 0.00 0.00 39.08 2.45
1489 1520 1.015109 TCAGTAGTCTCGGACGATGC 58.985 55.000 0.00 0.00 37.67 3.91
1673 1705 4.153117 AGTTAGCAAATTGTCTTCTCTGCG 59.847 41.667 0.00 0.00 35.00 5.18
1915 1950 9.083080 GCCGTTTGCAATTAGTATAATTTTTCT 57.917 29.630 0.00 0.00 40.77 2.52
2022 2057 4.082523 TTTCGCTGCTCGGGGGAG 62.083 66.667 0.00 0.00 39.05 4.30
2299 2335 4.595781 AGGTTGGTATAGTTGTTGACTGGA 59.404 41.667 0.00 0.00 39.48 3.86
2332 2368 9.507329 AGTAATTATGTCTCAAATGTTGTCTGT 57.493 29.630 0.00 0.00 0.00 3.41
2393 2429 6.016276 GGGAGTCGCCAAATTTGACAATATAT 60.016 38.462 19.86 0.00 38.95 0.86
2901 3229 5.296531 TGATTTGGTATTGTGGATGTCGATG 59.703 40.000 0.00 0.00 0.00 3.84
2902 3230 2.560504 TGGTATTGTGGATGTCGATGC 58.439 47.619 0.00 0.00 0.00 3.91
2903 3231 2.093235 TGGTATTGTGGATGTCGATGCA 60.093 45.455 0.00 0.00 0.00 3.96
3024 3353 4.643334 TGCCTCTAGTCGCTTTATTAGTCA 59.357 41.667 5.60 0.00 0.00 3.41
3106 3435 4.941263 TCCTTGATTTAGACATGGTTTCCG 59.059 41.667 0.00 0.00 35.17 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.154347 GAGGAGTCAGGGCGGCTG 62.154 72.222 9.56 5.48 0.00 4.85
20 21 4.704103 TGAGGAGTCAGGGCGGCT 62.704 66.667 9.56 0.00 0.00 5.52
21 22 3.672295 CTTGAGGAGTCAGGGCGGC 62.672 68.421 0.00 0.00 32.98 6.53
22 23 1.544825 TTCTTGAGGAGTCAGGGCGG 61.545 60.000 0.00 0.00 32.98 6.13
23 24 0.108424 CTTCTTGAGGAGTCAGGGCG 60.108 60.000 0.00 0.00 32.98 6.13
24 25 1.270907 TCTTCTTGAGGAGTCAGGGC 58.729 55.000 0.00 0.00 32.98 5.19
25 26 2.100584 CGATCTTCTTGAGGAGTCAGGG 59.899 54.545 0.00 0.00 32.98 4.45
26 27 2.757868 ACGATCTTCTTGAGGAGTCAGG 59.242 50.000 0.00 0.00 32.98 3.86
27 28 3.181491 GGACGATCTTCTTGAGGAGTCAG 60.181 52.174 0.00 0.00 32.98 3.51
28 29 2.755655 GGACGATCTTCTTGAGGAGTCA 59.244 50.000 0.00 0.00 32.08 3.41
29 30 2.223386 CGGACGATCTTCTTGAGGAGTC 60.223 54.545 0.00 0.00 0.00 3.36
30 31 1.746220 CGGACGATCTTCTTGAGGAGT 59.254 52.381 0.00 0.00 0.00 3.85
31 32 1.746220 ACGGACGATCTTCTTGAGGAG 59.254 52.381 0.00 0.00 0.00 3.69
32 33 1.835494 ACGGACGATCTTCTTGAGGA 58.165 50.000 0.00 0.00 0.00 3.71
33 34 2.656560 AACGGACGATCTTCTTGAGG 57.343 50.000 0.00 0.00 0.00 3.86
34 35 4.617808 TCTAACGGACGATCTTCTTGAG 57.382 45.455 0.00 0.00 0.00 3.02
35 36 4.638865 TGATCTAACGGACGATCTTCTTGA 59.361 41.667 0.00 0.00 37.51 3.02
36 37 4.921547 TGATCTAACGGACGATCTTCTTG 58.078 43.478 0.00 0.00 37.51 3.02
37 38 5.357314 TCTTGATCTAACGGACGATCTTCTT 59.643 40.000 0.00 0.00 37.51 2.52
38 39 4.882427 TCTTGATCTAACGGACGATCTTCT 59.118 41.667 0.00 0.00 37.51 2.85
39 40 5.171147 TCTTGATCTAACGGACGATCTTC 57.829 43.478 0.00 0.00 37.51 2.87
40 41 5.776173 ATCTTGATCTAACGGACGATCTT 57.224 39.130 0.00 0.00 37.51 2.40
41 42 6.879276 TTATCTTGATCTAACGGACGATCT 57.121 37.500 0.00 0.00 37.51 2.75
42 43 9.790389 ATAATTATCTTGATCTAACGGACGATC 57.210 33.333 0.00 0.00 37.22 3.69
43 44 9.574458 CATAATTATCTTGATCTAACGGACGAT 57.426 33.333 0.00 0.00 0.00 3.73
44 45 8.027189 CCATAATTATCTTGATCTAACGGACGA 58.973 37.037 0.00 0.00 0.00 4.20
45 46 8.027189 TCCATAATTATCTTGATCTAACGGACG 58.973 37.037 0.00 0.00 0.00 4.79
46 47 9.360093 CTCCATAATTATCTTGATCTAACGGAC 57.640 37.037 0.00 0.00 0.00 4.79
47 48 8.035394 GCTCCATAATTATCTTGATCTAACGGA 58.965 37.037 0.00 0.00 0.00 4.69
48 49 7.009631 CGCTCCATAATTATCTTGATCTAACGG 59.990 40.741 0.00 0.00 0.00 4.44
49 50 7.755373 TCGCTCCATAATTATCTTGATCTAACG 59.245 37.037 0.00 0.00 0.00 3.18
50 51 8.988064 TCGCTCCATAATTATCTTGATCTAAC 57.012 34.615 0.00 0.00 0.00 2.34
51 52 9.809096 GATCGCTCCATAATTATCTTGATCTAA 57.191 33.333 0.00 0.00 0.00 2.10
52 53 8.131731 CGATCGCTCCATAATTATCTTGATCTA 58.868 37.037 0.26 0.00 0.00 1.98
53 54 6.977502 CGATCGCTCCATAATTATCTTGATCT 59.022 38.462 0.26 0.00 0.00 2.75
54 55 6.292061 GCGATCGCTCCATAATTATCTTGATC 60.292 42.308 31.94 4.38 38.26 2.92
55 56 5.521735 GCGATCGCTCCATAATTATCTTGAT 59.478 40.000 31.94 0.00 38.26 2.57
56 57 4.864806 GCGATCGCTCCATAATTATCTTGA 59.135 41.667 31.94 0.00 38.26 3.02
57 58 5.136250 GCGATCGCTCCATAATTATCTTG 57.864 43.478 31.94 0.00 38.26 3.02
72 73 0.855349 CCATGTAACAGAGCGATCGC 59.145 55.000 32.15 32.15 42.33 4.58
73 74 1.491670 CCCATGTAACAGAGCGATCG 58.508 55.000 11.69 11.69 0.00 3.69
74 75 1.221414 GCCCATGTAACAGAGCGATC 58.779 55.000 0.00 0.00 0.00 3.69
75 76 0.179045 GGCCCATGTAACAGAGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
76 77 1.220749 GGCCCATGTAACAGAGCGA 59.779 57.895 0.00 0.00 0.00 4.93
77 78 1.819632 GGGCCCATGTAACAGAGCG 60.820 63.158 19.95 0.00 0.00 5.03
78 79 1.819632 CGGGCCCATGTAACAGAGC 60.820 63.158 24.92 0.00 0.00 4.09
79 80 0.462047 GACGGGCCCATGTAACAGAG 60.462 60.000 24.92 3.12 0.00 3.35
80 81 1.195442 TGACGGGCCCATGTAACAGA 61.195 55.000 24.92 0.00 0.00 3.41
81 82 1.024579 GTGACGGGCCCATGTAACAG 61.025 60.000 24.92 4.83 0.00 3.16
82 83 1.003112 GTGACGGGCCCATGTAACA 60.003 57.895 24.92 8.96 0.00 2.41
83 84 1.747745 GGTGACGGGCCCATGTAAC 60.748 63.158 24.92 15.63 0.00 2.50
84 85 2.672295 GGTGACGGGCCCATGTAA 59.328 61.111 24.92 1.89 0.00 2.41
111 112 4.838152 TCCTCCTTGATGCGCGCC 62.838 66.667 30.77 15.18 0.00 6.53
112 113 3.267860 CTCCTCCTTGATGCGCGC 61.268 66.667 27.26 27.26 0.00 6.86
113 114 1.880340 GACTCCTCCTTGATGCGCG 60.880 63.158 0.00 0.00 0.00 6.86
114 115 1.880340 CGACTCCTCCTTGATGCGC 60.880 63.158 0.00 0.00 0.00 6.09
115 116 1.880340 GCGACTCCTCCTTGATGCG 60.880 63.158 0.00 0.00 0.00 4.73
116 117 1.522580 GGCGACTCCTCCTTGATGC 60.523 63.158 0.00 0.00 0.00 3.91
117 118 0.467384 ATGGCGACTCCTCCTTGATG 59.533 55.000 0.00 0.00 35.26 3.07
118 119 0.755686 GATGGCGACTCCTCCTTGAT 59.244 55.000 0.00 0.00 35.26 2.57
119 120 1.330655 GGATGGCGACTCCTCCTTGA 61.331 60.000 0.00 0.00 32.60 3.02
120 121 1.144936 GGATGGCGACTCCTCCTTG 59.855 63.158 0.00 0.00 32.60 3.61
121 122 2.066999 GGGATGGCGACTCCTCCTT 61.067 63.158 6.70 0.00 34.50 3.36
122 123 2.444895 GGGATGGCGACTCCTCCT 60.445 66.667 6.70 0.00 34.50 3.69
123 124 3.551407 GGGGATGGCGACTCCTCC 61.551 72.222 6.70 2.13 35.26 4.30
124 125 2.764128 TGGGGATGGCGACTCCTC 60.764 66.667 6.70 3.52 33.53 3.71
125 126 3.083997 GTGGGGATGGCGACTCCT 61.084 66.667 6.70 0.00 35.26 3.69
126 127 3.083997 AGTGGGGATGGCGACTCC 61.084 66.667 0.00 0.00 0.00 3.85
127 128 2.187946 CAGTGGGGATGGCGACTC 59.812 66.667 0.00 0.00 0.00 3.36
128 129 2.607750 ACAGTGGGGATGGCGACT 60.608 61.111 0.00 0.00 0.00 4.18
129 130 2.436646 CACAGTGGGGATGGCGAC 60.437 66.667 0.00 0.00 0.00 5.19
130 131 4.408821 GCACAGTGGGGATGGCGA 62.409 66.667 1.84 0.00 0.00 5.54
132 133 4.365111 TGGCACAGTGGGGATGGC 62.365 66.667 1.84 0.00 39.26 4.40
133 134 2.361610 GTGGCACAGTGGGGATGG 60.362 66.667 13.86 0.00 41.80 3.51
134 135 2.361610 GGTGGCACAGTGGGGATG 60.362 66.667 20.82 0.00 41.80 3.51
135 136 2.858476 TGGTGGCACAGTGGGGAT 60.858 61.111 20.82 0.00 41.80 3.85
136 137 3.884774 GTGGTGGCACAGTGGGGA 61.885 66.667 20.82 0.00 41.80 4.81
137 138 4.202574 TGTGGTGGCACAGTGGGG 62.203 66.667 20.82 0.00 41.80 4.96
138 139 2.906897 GTGTGGTGGCACAGTGGG 60.907 66.667 20.82 0.00 41.80 4.61
139 140 3.279116 CGTGTGGTGGCACAGTGG 61.279 66.667 20.82 0.11 41.80 4.00
140 141 1.775039 CTTCGTGTGGTGGCACAGTG 61.775 60.000 20.82 0.00 41.80 3.66
141 142 1.523711 CTTCGTGTGGTGGCACAGT 60.524 57.895 20.82 0.00 41.80 3.55
142 143 2.896801 GCTTCGTGTGGTGGCACAG 61.897 63.158 20.82 7.24 41.80 3.66
143 144 2.899838 GCTTCGTGTGGTGGCACA 60.900 61.111 20.82 2.61 39.19 4.57
144 145 4.012895 CGCTTCGTGTGGTGGCAC 62.013 66.667 9.70 9.70 36.12 5.01
145 146 4.539083 ACGCTTCGTGTGGTGGCA 62.539 61.111 0.00 0.00 39.18 4.92
154 155 2.202492 CGCTAGCTCACGCTTCGT 60.202 61.111 13.93 0.00 46.47 3.85
155 156 2.202492 ACGCTAGCTCACGCTTCG 60.202 61.111 13.93 0.00 46.47 3.79
156 157 1.874466 GGACGCTAGCTCACGCTTC 60.874 63.158 13.93 4.70 46.47 3.86
157 158 2.182030 GGACGCTAGCTCACGCTT 59.818 61.111 13.93 0.00 46.47 4.68
159 160 2.478890 TAGGGACGCTAGCTCACGC 61.479 63.158 13.93 11.59 0.00 5.34
160 161 1.096386 AGTAGGGACGCTAGCTCACG 61.096 60.000 13.93 6.75 0.00 4.35
161 162 0.664224 GAGTAGGGACGCTAGCTCAC 59.336 60.000 13.93 10.49 0.00 3.51
162 163 0.465824 GGAGTAGGGACGCTAGCTCA 60.466 60.000 13.93 0.00 0.00 4.26
163 164 0.465824 TGGAGTAGGGACGCTAGCTC 60.466 60.000 13.93 9.21 0.00 4.09
164 165 0.186386 ATGGAGTAGGGACGCTAGCT 59.814 55.000 13.93 0.00 0.00 3.32
165 166 0.599060 GATGGAGTAGGGACGCTAGC 59.401 60.000 4.06 4.06 0.00 3.42
166 167 1.202952 AGGATGGAGTAGGGACGCTAG 60.203 57.143 0.00 0.00 0.00 3.42
167 168 0.851469 AGGATGGAGTAGGGACGCTA 59.149 55.000 0.00 0.00 0.00 4.26
168 169 0.757188 CAGGATGGAGTAGGGACGCT 60.757 60.000 0.00 0.00 0.00 5.07
169 170 1.043673 ACAGGATGGAGTAGGGACGC 61.044 60.000 0.00 0.00 43.62 5.19
170 171 0.747255 CACAGGATGGAGTAGGGACG 59.253 60.000 0.00 0.00 43.62 4.79
171 172 2.160721 TCACAGGATGGAGTAGGGAC 57.839 55.000 0.00 0.00 43.62 4.46
172 173 2.626950 CCTTCACAGGATGGAGTAGGGA 60.627 54.545 0.00 0.00 44.19 4.20
173 174 1.765314 CCTTCACAGGATGGAGTAGGG 59.235 57.143 0.00 0.00 44.19 3.53
174 175 2.752030 TCCTTCACAGGATGGAGTAGG 58.248 52.381 0.00 0.00 45.20 3.18
184 185 2.581354 CGGCTCCTCCTTCACAGG 59.419 66.667 0.00 0.00 42.50 4.00
185 186 2.581354 CCGGCTCCTCCTTCACAG 59.419 66.667 0.00 0.00 0.00 3.66
186 187 3.706373 GCCGGCTCCTCCTTCACA 61.706 66.667 22.15 0.00 0.00 3.58
187 188 4.475135 GGCCGGCTCCTCCTTCAC 62.475 72.222 28.56 0.41 0.00 3.18
188 189 4.722535 AGGCCGGCTCCTCCTTCA 62.723 66.667 28.56 0.00 0.00 3.02
189 190 3.855853 GAGGCCGGCTCCTCCTTC 61.856 72.222 28.56 6.68 45.40 3.46
238 239 4.452733 CTCCTTGACCCGGCGTCC 62.453 72.222 17.20 0.00 41.18 4.79
239 240 4.452733 CCTCCTTGACCCGGCGTC 62.453 72.222 14.17 14.17 42.33 5.19
241 242 4.148825 CTCCTCCTTGACCCGGCG 62.149 72.222 0.00 0.00 0.00 6.46
242 243 4.475135 GCTCCTCCTTGACCCGGC 62.475 72.222 0.00 0.00 0.00 6.13
243 244 3.787001 GGCTCCTCCTTGACCCGG 61.787 72.222 0.00 0.00 0.00 5.73
244 245 4.148825 CGGCTCCTCCTTGACCCG 62.149 72.222 0.00 0.00 0.00 5.28
245 246 2.683933 TCGGCTCCTCCTTGACCC 60.684 66.667 0.00 0.00 0.00 4.46
246 247 2.579738 GTCGGCTCCTCCTTGACC 59.420 66.667 0.00 0.00 0.00 4.02
247 248 1.310933 TACGTCGGCTCCTCCTTGAC 61.311 60.000 0.00 0.00 0.00 3.18
248 249 1.001764 TACGTCGGCTCCTCCTTGA 60.002 57.895 0.00 0.00 0.00 3.02
249 250 1.139095 GTACGTCGGCTCCTCCTTG 59.861 63.158 0.00 0.00 0.00 3.61
250 251 2.050934 GGTACGTCGGCTCCTCCTT 61.051 63.158 0.00 0.00 0.00 3.36
251 252 2.439883 GGTACGTCGGCTCCTCCT 60.440 66.667 0.00 0.00 0.00 3.69
252 253 3.525545 GGGTACGTCGGCTCCTCC 61.526 72.222 0.00 0.00 0.00 4.30
253 254 3.885521 CGGGTACGTCGGCTCCTC 61.886 72.222 0.00 0.00 34.81 3.71
256 257 4.849329 CAGCGGGTACGTCGGCTC 62.849 72.222 6.37 0.00 40.56 4.70
260 261 4.710695 TGCACAGCGGGTACGTCG 62.711 66.667 0.00 0.00 43.45 5.12
261 262 2.809601 CTGCACAGCGGGTACGTC 60.810 66.667 0.00 0.00 43.45 4.34
262 263 3.569049 GACTGCACAGCGGGTACGT 62.569 63.158 2.60 0.00 43.45 3.57
263 264 2.809601 GACTGCACAGCGGGTACG 60.810 66.667 2.60 0.00 39.57 3.67
264 265 2.809601 CGACTGCACAGCGGGTAC 60.810 66.667 2.60 0.00 39.57 3.34
265 266 1.525718 TAACGACTGCACAGCGGGTA 61.526 55.000 15.34 1.99 39.57 3.69
266 267 2.167398 ATAACGACTGCACAGCGGGT 62.167 55.000 15.34 2.81 39.57 5.28
267 268 1.447838 ATAACGACTGCACAGCGGG 60.448 57.895 15.34 1.84 39.57 6.13
268 269 1.695893 CCATAACGACTGCACAGCGG 61.696 60.000 15.34 4.74 41.29 5.52
269 270 1.709760 CCATAACGACTGCACAGCG 59.290 57.895 11.21 11.21 35.30 5.18
270 271 1.425428 GCCATAACGACTGCACAGC 59.575 57.895 0.00 0.00 0.00 4.40
271 272 1.695893 CGGCCATAACGACTGCACAG 61.696 60.000 2.24 0.00 0.00 3.66
272 273 1.739929 CGGCCATAACGACTGCACA 60.740 57.895 2.24 0.00 0.00 4.57
273 274 3.089784 CGGCCATAACGACTGCAC 58.910 61.111 2.24 0.00 0.00 4.57
274 275 2.817834 GCGGCCATAACGACTGCA 60.818 61.111 2.24 0.00 35.72 4.41
275 276 2.180204 ATGCGGCCATAACGACTGC 61.180 57.895 2.24 0.00 36.21 4.40
276 277 1.643292 CATGCGGCCATAACGACTG 59.357 57.895 2.24 0.00 0.00 3.51
277 278 1.523711 CCATGCGGCCATAACGACT 60.524 57.895 2.24 0.00 0.00 4.18
278 279 1.522806 TCCATGCGGCCATAACGAC 60.523 57.895 2.24 0.00 0.00 4.34
279 280 1.522806 GTCCATGCGGCCATAACGA 60.523 57.895 2.24 0.00 0.00 3.85
280 281 2.881266 CGTCCATGCGGCCATAACG 61.881 63.158 2.24 0.00 35.15 3.18
281 282 3.022287 CGTCCATGCGGCCATAAC 58.978 61.111 2.24 0.00 0.00 1.89
282 283 2.899838 GCGTCCATGCGGCCATAA 60.900 61.111 2.24 0.00 0.00 1.90
309 310 4.821589 CCTCCTTGACGGCGAGGC 62.822 72.222 21.06 2.67 44.25 4.70
310 311 3.068691 TCCTCCTTGACGGCGAGG 61.069 66.667 19.76 19.76 45.73 4.63
311 312 1.878656 AACTCCTCCTTGACGGCGAG 61.879 60.000 16.62 0.00 35.89 5.03
312 313 1.906824 AACTCCTCCTTGACGGCGA 60.907 57.895 16.62 0.00 0.00 5.54
313 314 1.738099 CAACTCCTCCTTGACGGCG 60.738 63.158 4.80 4.80 0.00 6.46
314 315 2.035442 GCAACTCCTCCTTGACGGC 61.035 63.158 0.00 0.00 0.00 5.68
315 316 0.671781 CAGCAACTCCTCCTTGACGG 60.672 60.000 0.00 0.00 0.00 4.79
316 317 1.294659 GCAGCAACTCCTCCTTGACG 61.295 60.000 0.00 0.00 0.00 4.35
317 318 0.957888 GGCAGCAACTCCTCCTTGAC 60.958 60.000 0.00 0.00 0.00 3.18
318 319 1.376466 GGCAGCAACTCCTCCTTGA 59.624 57.895 0.00 0.00 0.00 3.02
319 320 1.676967 GGGCAGCAACTCCTCCTTG 60.677 63.158 0.00 0.00 0.00 3.61
320 321 2.759795 GGGCAGCAACTCCTCCTT 59.240 61.111 0.00 0.00 0.00 3.36
321 322 3.710722 CGGGCAGCAACTCCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
332 333 0.031178 GCCTTATTGATTGCGGGCAG 59.969 55.000 0.00 0.00 39.38 4.85
333 334 1.723608 CGCCTTATTGATTGCGGGCA 61.724 55.000 0.00 0.00 43.08 5.36
334 335 1.008538 CGCCTTATTGATTGCGGGC 60.009 57.895 0.00 0.00 43.08 6.13
338 339 0.385390 CCCCACGCCTTATTGATTGC 59.615 55.000 0.00 0.00 0.00 3.56
339 340 0.385390 GCCCCACGCCTTATTGATTG 59.615 55.000 0.00 0.00 0.00 2.67
340 341 2.807247 GCCCCACGCCTTATTGATT 58.193 52.632 0.00 0.00 0.00 2.57
341 342 4.579127 GCCCCACGCCTTATTGAT 57.421 55.556 0.00 0.00 0.00 2.57
356 357 3.851128 GTAGTGGAGGAGGCGGCC 61.851 72.222 12.11 12.11 0.00 6.13
357 358 3.851128 GGTAGTGGAGGAGGCGGC 61.851 72.222 0.00 0.00 0.00 6.53
358 359 2.042843 AGGTAGTGGAGGAGGCGG 60.043 66.667 0.00 0.00 0.00 6.13
359 360 2.482333 CGAGGTAGTGGAGGAGGCG 61.482 68.421 0.00 0.00 0.00 5.52
360 361 0.683504 TTCGAGGTAGTGGAGGAGGC 60.684 60.000 0.00 0.00 0.00 4.70
361 362 1.394618 CTTCGAGGTAGTGGAGGAGG 58.605 60.000 0.00 0.00 0.00 4.30
362 363 1.064611 TCCTTCGAGGTAGTGGAGGAG 60.065 57.143 0.00 0.00 36.53 3.69
363 364 0.997363 TCCTTCGAGGTAGTGGAGGA 59.003 55.000 0.00 0.00 36.53 3.71
364 365 1.394618 CTCCTTCGAGGTAGTGGAGG 58.605 60.000 0.00 0.00 40.25 4.30
374 375 1.226603 CGTAACCGCCTCCTTCGAG 60.227 63.158 0.00 0.00 35.72 4.04
375 376 2.703798 CCGTAACCGCCTCCTTCGA 61.704 63.158 0.00 0.00 0.00 3.71
376 377 2.202703 CCGTAACCGCCTCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
377 378 2.510918 GCCGTAACCGCCTCCTTC 60.511 66.667 0.00 0.00 0.00 3.46
378 379 4.446413 CGCCGTAACCGCCTCCTT 62.446 66.667 0.00 0.00 0.00 3.36
405 406 3.991536 GAGACGACGGCCCTCAAGC 62.992 68.421 0.00 0.00 0.00 4.01
406 407 2.182030 GAGACGACGGCCCTCAAG 59.818 66.667 0.00 0.00 0.00 3.02
407 408 3.379445 GGAGACGACGGCCCTCAA 61.379 66.667 0.00 0.00 0.00 3.02
408 409 4.671590 TGGAGACGACGGCCCTCA 62.672 66.667 0.00 0.00 0.00 3.86
409 410 3.358076 CTTGGAGACGACGGCCCTC 62.358 68.421 0.00 1.18 0.00 4.30
410 411 3.382832 CTTGGAGACGACGGCCCT 61.383 66.667 0.00 0.00 0.00 5.19
411 412 4.452733 CCTTGGAGACGACGGCCC 62.453 72.222 0.00 0.00 0.00 5.80
414 415 4.796231 CCGCCTTGGAGACGACGG 62.796 72.222 0.00 0.00 42.00 4.79
415 416 3.744719 TCCGCCTTGGAGACGACG 61.745 66.667 0.00 0.00 43.74 5.12
437 438 4.424566 TCGGTTGTACCTCGCCGC 62.425 66.667 8.87 0.00 43.45 6.53
438 439 2.505557 GTCGGTTGTACCTCGCCG 60.506 66.667 7.79 7.79 44.95 6.46
439 440 2.505557 CGTCGGTTGTACCTCGCC 60.506 66.667 0.00 0.00 35.66 5.54
440 441 3.177249 GCGTCGGTTGTACCTCGC 61.177 66.667 15.20 15.20 45.56 5.03
441 442 0.734942 ATTGCGTCGGTTGTACCTCG 60.735 55.000 0.00 0.00 35.66 4.63
442 443 0.719465 CATTGCGTCGGTTGTACCTC 59.281 55.000 0.00 0.00 35.66 3.85
443 444 1.296056 GCATTGCGTCGGTTGTACCT 61.296 55.000 0.00 0.00 35.66 3.08
444 445 1.133869 GCATTGCGTCGGTTGTACC 59.866 57.895 0.00 0.00 34.05 3.34
445 446 1.133869 GGCATTGCGTCGGTTGTAC 59.866 57.895 1.91 0.00 0.00 2.90
446 447 2.384309 CGGCATTGCGTCGGTTGTA 61.384 57.895 1.91 0.00 0.00 2.41
447 448 3.722295 CGGCATTGCGTCGGTTGT 61.722 61.111 1.91 0.00 0.00 3.32
448 449 2.631696 GATCGGCATTGCGTCGGTTG 62.632 60.000 1.91 0.00 0.00 3.77
449 450 2.435938 ATCGGCATTGCGTCGGTT 60.436 55.556 1.91 0.00 0.00 4.44
450 451 2.890474 GATCGGCATTGCGTCGGT 60.890 61.111 1.91 0.00 0.00 4.69
451 452 2.162921 GATGATCGGCATTGCGTCGG 62.163 60.000 1.91 0.00 37.34 4.79
452 453 1.202568 GATGATCGGCATTGCGTCG 59.797 57.895 1.91 1.66 37.34 5.12
453 454 0.657312 TTGATGATCGGCATTGCGTC 59.343 50.000 1.91 1.79 37.34 5.19
454 455 0.659427 CTTGATGATCGGCATTGCGT 59.341 50.000 1.91 0.00 37.34 5.24
455 456 0.939419 TCTTGATGATCGGCATTGCG 59.061 50.000 1.91 0.00 37.34 4.85
456 457 1.945394 ACTCTTGATGATCGGCATTGC 59.055 47.619 0.00 0.00 37.34 3.56
457 458 3.002042 GTCACTCTTGATGATCGGCATTG 59.998 47.826 0.00 0.00 37.34 2.82
458 459 3.201290 GTCACTCTTGATGATCGGCATT 58.799 45.455 0.00 0.00 37.34 3.56
459 460 2.800985 CGTCACTCTTGATGATCGGCAT 60.801 50.000 0.00 0.00 40.78 4.40
460 461 1.469767 CGTCACTCTTGATGATCGGCA 60.470 52.381 0.00 0.00 40.78 5.69
461 462 1.203928 CGTCACTCTTGATGATCGGC 58.796 55.000 0.00 0.00 40.78 5.54
462 463 2.188524 CACGTCACTCTTGATGATCGG 58.811 52.381 0.89 0.00 40.78 4.18
463 464 2.188524 CCACGTCACTCTTGATGATCG 58.811 52.381 0.89 0.00 40.78 3.69
464 465 1.929836 GCCACGTCACTCTTGATGATC 59.070 52.381 0.89 0.00 40.78 2.92
465 466 1.737029 CGCCACGTCACTCTTGATGAT 60.737 52.381 0.89 0.00 40.78 2.45
466 467 0.388520 CGCCACGTCACTCTTGATGA 60.389 55.000 0.89 0.00 40.78 2.92
467 468 1.959899 GCGCCACGTCACTCTTGATG 61.960 60.000 0.00 0.00 43.53 3.07
468 469 1.738099 GCGCCACGTCACTCTTGAT 60.738 57.895 0.00 0.00 33.11 2.57
469 470 2.355837 GCGCCACGTCACTCTTGA 60.356 61.111 0.00 0.00 0.00 3.02
470 471 3.414700 GGCGCCACGTCACTCTTG 61.415 66.667 24.80 0.00 0.00 3.02
471 472 3.865929 CTGGCGCCACGTCACTCTT 62.866 63.158 29.03 0.00 36.25 2.85
472 473 4.363990 CTGGCGCCACGTCACTCT 62.364 66.667 29.03 0.00 36.25 3.24
473 474 4.357947 TCTGGCGCCACGTCACTC 62.358 66.667 29.03 0.00 36.25 3.51
474 475 4.664677 GTCTGGCGCCACGTCACT 62.665 66.667 29.03 0.00 36.25 3.41
475 476 4.664677 AGTCTGGCGCCACGTCAC 62.665 66.667 29.03 19.14 36.25 3.67
476 477 4.662961 CAGTCTGGCGCCACGTCA 62.663 66.667 29.03 6.80 39.83 4.35
477 478 4.664677 ACAGTCTGGCGCCACGTC 62.665 66.667 29.03 18.66 0.00 4.34
478 479 4.969196 CACAGTCTGGCGCCACGT 62.969 66.667 29.03 17.45 0.00 4.49
479 480 4.969196 ACACAGTCTGGCGCCACG 62.969 66.667 29.03 21.64 0.00 4.94
480 481 3.044305 GACACAGTCTGGCGCCAC 61.044 66.667 29.03 18.06 0.00 5.01
481 482 4.314440 GGACACAGTCTGGCGCCA 62.314 66.667 30.59 30.59 32.47 5.69
484 485 4.662961 TGCGGACACAGTCTGGCG 62.663 66.667 4.53 0.00 39.16 5.69
485 486 2.280797 TTGCGGACACAGTCTGGC 60.281 61.111 4.53 7.28 39.16 4.85
486 487 2.310233 CGTTGCGGACACAGTCTGG 61.310 63.158 4.53 0.00 39.16 3.86
487 488 1.299850 TCGTTGCGGACACAGTCTG 60.300 57.895 0.00 0.00 41.44 3.51
488 489 1.299926 GTCGTTGCGGACACAGTCT 60.300 57.895 0.00 0.00 36.91 3.24
489 490 2.308039 GGTCGTTGCGGACACAGTC 61.308 63.158 5.00 0.00 38.70 3.51
490 491 2.279918 GGTCGTTGCGGACACAGT 60.280 61.111 5.00 0.00 38.70 3.55
491 492 3.041940 GGGTCGTTGCGGACACAG 61.042 66.667 5.00 0.00 40.14 3.66
492 493 3.542676 AGGGTCGTTGCGGACACA 61.543 61.111 7.28 0.00 42.89 3.72
493 494 3.041940 CAGGGTCGTTGCGGACAC 61.042 66.667 5.00 1.19 40.72 3.67
494 495 3.228017 TCAGGGTCGTTGCGGACA 61.228 61.111 5.00 0.00 38.70 4.02
495 496 2.737376 GTCAGGGTCGTTGCGGAC 60.737 66.667 0.00 0.00 36.18 4.79
496 497 3.998672 GGTCAGGGTCGTTGCGGA 61.999 66.667 0.00 0.00 0.00 5.54
497 498 3.934391 GAGGTCAGGGTCGTTGCGG 62.934 68.421 0.00 0.00 0.00 5.69
498 499 2.432628 GAGGTCAGGGTCGTTGCG 60.433 66.667 0.00 0.00 0.00 4.85
499 500 2.432628 CGAGGTCAGGGTCGTTGC 60.433 66.667 0.00 0.00 0.00 4.17
504 505 4.131088 GGCGACGAGGTCAGGGTC 62.131 72.222 0.00 0.00 32.09 4.46
519 520 4.760047 ACTGGATGGTCACGCGGC 62.760 66.667 12.47 0.00 0.00 6.53
520 521 1.635663 GAAACTGGATGGTCACGCGG 61.636 60.000 12.47 0.00 0.00 6.46
521 522 0.948623 TGAAACTGGATGGTCACGCG 60.949 55.000 3.53 3.53 0.00 6.01
522 523 1.069227 GTTGAAACTGGATGGTCACGC 60.069 52.381 0.00 0.00 0.00 5.34
523 524 2.494059 AGTTGAAACTGGATGGTCACG 58.506 47.619 0.00 0.00 37.98 4.35
524 525 3.882888 TGAAGTTGAAACTGGATGGTCAC 59.117 43.478 0.00 0.00 39.66 3.67
525 526 4.136796 CTGAAGTTGAAACTGGATGGTCA 58.863 43.478 0.00 0.00 39.66 4.02
526 527 4.137543 ACTGAAGTTGAAACTGGATGGTC 58.862 43.478 0.00 0.00 39.66 4.02
527 528 4.170468 ACTGAAGTTGAAACTGGATGGT 57.830 40.909 0.00 0.00 39.66 3.55
528 529 5.765182 ACTAACTGAAGTTGAAACTGGATGG 59.235 40.000 5.95 0.00 39.66 3.51
529 530 6.867662 ACTAACTGAAGTTGAAACTGGATG 57.132 37.500 5.95 0.00 39.66 3.51
530 531 7.556275 TCAAACTAACTGAAGTTGAAACTGGAT 59.444 33.333 5.95 0.00 39.62 3.41
531 532 6.882140 TCAAACTAACTGAAGTTGAAACTGGA 59.118 34.615 5.95 0.00 39.62 3.86
532 533 7.083875 TCAAACTAACTGAAGTTGAAACTGG 57.916 36.000 5.95 0.00 39.62 4.00
533 534 8.964420 TTTCAAACTAACTGAAGTTGAAACTG 57.036 30.769 5.95 0.00 39.62 3.16
534 535 9.788960 GATTTCAAACTAACTGAAGTTGAAACT 57.211 29.630 10.95 0.00 39.62 2.66
535 536 9.020813 GGATTTCAAACTAACTGAAGTTGAAAC 57.979 33.333 10.95 6.61 39.62 2.78
536 537 7.913297 CGGATTTCAAACTAACTGAAGTTGAAA 59.087 33.333 11.08 11.08 39.62 2.69
537 538 7.414436 CGGATTTCAAACTAACTGAAGTTGAA 58.586 34.615 5.95 0.00 39.62 2.69
538 539 6.512741 GCGGATTTCAAACTAACTGAAGTTGA 60.513 38.462 5.95 0.00 39.62 3.18
539 540 5.625311 GCGGATTTCAAACTAACTGAAGTTG 59.375 40.000 5.95 0.00 39.62 3.16
540 541 5.278315 GGCGGATTTCAAACTAACTGAAGTT 60.278 40.000 0.71 0.71 41.46 2.66
541 542 4.215613 GGCGGATTTCAAACTAACTGAAGT 59.784 41.667 0.00 0.00 34.41 3.01
542 543 4.379499 GGGCGGATTTCAAACTAACTGAAG 60.379 45.833 0.00 0.00 34.41 3.02
543 544 3.504520 GGGCGGATTTCAAACTAACTGAA 59.495 43.478 0.00 0.00 0.00 3.02
544 545 3.078837 GGGCGGATTTCAAACTAACTGA 58.921 45.455 0.00 0.00 0.00 3.41
545 546 2.159572 CGGGCGGATTTCAAACTAACTG 60.160 50.000 0.00 0.00 0.00 3.16
546 547 2.081462 CGGGCGGATTTCAAACTAACT 58.919 47.619 0.00 0.00 0.00 2.24
547 548 1.131693 CCGGGCGGATTTCAAACTAAC 59.868 52.381 0.00 0.00 37.50 2.34
548 549 1.271488 ACCGGGCGGATTTCAAACTAA 60.271 47.619 6.32 0.00 38.96 2.24
549 550 0.325602 ACCGGGCGGATTTCAAACTA 59.674 50.000 6.32 0.00 38.96 2.24
550 551 0.538746 AACCGGGCGGATTTCAAACT 60.539 50.000 6.32 0.00 38.96 2.66
551 552 0.315886 AAACCGGGCGGATTTCAAAC 59.684 50.000 6.32 0.00 38.96 2.93
552 553 0.315568 CAAACCGGGCGGATTTCAAA 59.684 50.000 6.32 0.00 38.96 2.69
553 554 0.537600 TCAAACCGGGCGGATTTCAA 60.538 50.000 6.32 0.00 38.96 2.69
554 555 0.537600 TTCAAACCGGGCGGATTTCA 60.538 50.000 6.32 0.00 38.96 2.69
555 556 0.109458 GTTCAAACCGGGCGGATTTC 60.109 55.000 6.32 0.00 38.96 2.17
556 557 0.824182 TGTTCAAACCGGGCGGATTT 60.824 50.000 6.32 0.00 38.96 2.17
557 558 0.824182 TTGTTCAAACCGGGCGGATT 60.824 50.000 6.32 0.00 38.96 3.01
558 559 0.824182 TTTGTTCAAACCGGGCGGAT 60.824 50.000 6.32 0.00 38.96 4.18
559 560 0.824182 ATTTGTTCAAACCGGGCGGA 60.824 50.000 6.32 0.00 38.96 5.54
560 561 0.032815 AATTTGTTCAAACCGGGCGG 59.967 50.000 6.32 0.00 42.03 6.13
561 562 1.790043 GAAATTTGTTCAAACCGGGCG 59.210 47.619 6.32 0.00 0.00 6.13
562 563 1.790043 CGAAATTTGTTCAAACCGGGC 59.210 47.619 6.32 0.00 0.00 6.13
563 564 3.047093 GACGAAATTTGTTCAAACCGGG 58.953 45.455 6.32 0.00 0.00 5.73
575 576 9.030301 CAATTTCAAACTAACTGGACGAAATTT 57.970 29.630 0.00 0.00 38.73 1.82
587 588 3.738791 CCGGCCAACAATTTCAAACTAAC 59.261 43.478 2.24 0.00 0.00 2.34
598 599 2.083774 CGCATATATCCGGCCAACAAT 58.916 47.619 2.24 0.00 0.00 2.71
599 600 1.518325 CGCATATATCCGGCCAACAA 58.482 50.000 2.24 0.00 0.00 2.83
600 601 0.321210 CCGCATATATCCGGCCAACA 60.321 55.000 1.26 0.00 37.85 3.33
625 626 0.749454 GCAGAAGGCCGTCATCCAAT 60.749 55.000 21.26 0.00 36.11 3.16
663 664 2.163613 GGACATTTTCAATGACGGGGAC 59.836 50.000 3.47 0.00 0.00 4.46
917 923 1.991813 TGTGGTGGGATTTGGATCTGA 59.008 47.619 0.00 0.00 32.66 3.27
1126 1155 4.175489 GCTGCCGTGCTCATGCTG 62.175 66.667 0.00 0.00 40.48 4.41
1282 1311 0.877743 GAAAGTGCAGCTTCCACCTC 59.122 55.000 9.95 4.97 36.17 3.85
1373 1402 4.332543 ACTCCTGGCCCCGGAAGA 62.333 66.667 0.73 0.00 0.00 2.87
1433 1462 3.726607 CAGAGAAGACAGTTTGCAGAGT 58.273 45.455 0.00 0.00 0.00 3.24
1781 1813 0.743701 GAGCCGTAGAGACCGTCAGA 60.744 60.000 0.40 0.00 0.00 3.27
1915 1950 3.799366 TCACGTACAAAAGGCAGAGAAA 58.201 40.909 0.00 0.00 0.00 2.52
2022 2057 2.435059 GCCTGGGTTGAGCTCGTC 60.435 66.667 9.64 4.30 0.00 4.20
3024 3353 2.543777 ACTGGTAATGCTTGACACGT 57.456 45.000 0.00 0.00 0.00 4.49
3106 3435 3.194755 ACCGCCTTAAAAACATTGATCCC 59.805 43.478 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.