Multiple sequence alignment - TraesCS7A01G422700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G422700 chr7A 100.000 2804 0 0 1 2804 613175735 613178538 0.000000e+00 5179.0
1 TraesCS7A01G422700 chr7A 100.000 29 0 0 2772 2800 613470113 613470141 1.000000e-03 54.7
2 TraesCS7A01G422700 chr7D 91.927 2341 119 43 507 2804 533757359 533759672 0.000000e+00 3212.0
3 TraesCS7A01G422700 chr7D 94.083 507 24 4 4 506 533756800 533757304 0.000000e+00 765.0
4 TraesCS7A01G422700 chr7B 91.970 2304 135 30 507 2800 573922452 573924715 0.000000e+00 3184.0
5 TraesCS7A01G422700 chr7B 93.349 436 22 2 71 506 573921969 573922397 3.050000e-179 638.0
6 TraesCS7A01G422700 chr7B 98.507 67 1 0 1 67 573920019 573920085 4.910000e-23 119.0
7 TraesCS7A01G422700 chr5A 82.517 858 111 23 972 1816 18389855 18389024 0.000000e+00 717.0
8 TraesCS7A01G422700 chrUn 91.912 408 30 3 2393 2799 122475472 122475877 4.050000e-158 568.0
9 TraesCS7A01G422700 chr5D 86.038 530 65 7 911 1435 26531865 26532390 6.780000e-156 560.0
10 TraesCS7A01G422700 chr2D 76.522 460 94 11 1047 1499 94328855 94328403 3.610000e-59 239.0
11 TraesCS7A01G422700 chr2B 75.930 457 102 6 1047 1499 146451971 146451519 7.810000e-56 228.0
12 TraesCS7A01G422700 chr2B 86.441 59 5 3 787 844 554161796 554161852 8.390000e-06 62.1
13 TraesCS7A01G422700 chr2A 95.556 45 2 0 787 831 145445573 145445617 3.870000e-09 73.1
14 TraesCS7A01G422700 chr2A 90.000 50 4 1 790 838 450064352 450064303 2.330000e-06 63.9
15 TraesCS7A01G422700 chr5B 91.837 49 3 1 787 835 690032849 690032802 1.800000e-07 67.6
16 TraesCS7A01G422700 chr6A 90.196 51 2 3 790 840 60432934 60432887 2.330000e-06 63.9
17 TraesCS7A01G422700 chr1B 88.679 53 5 1 790 842 667074717 667074666 2.330000e-06 63.9
18 TraesCS7A01G422700 chr1D 87.500 56 4 3 787 841 225403957 225404010 8.390000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G422700 chr7A 613175735 613178538 2803 False 5179.000000 5179 100.000000 1 2804 1 chr7A.!!$F1 2803
1 TraesCS7A01G422700 chr7D 533756800 533759672 2872 False 1988.500000 3212 93.005000 4 2804 2 chr7D.!!$F1 2800
2 TraesCS7A01G422700 chr7B 573920019 573924715 4696 False 1313.666667 3184 94.608667 1 2800 3 chr7B.!!$F1 2799
3 TraesCS7A01G422700 chr5A 18389024 18389855 831 True 717.000000 717 82.517000 972 1816 1 chr5A.!!$R1 844
4 TraesCS7A01G422700 chr5D 26531865 26532390 525 False 560.000000 560 86.038000 911 1435 1 chr5D.!!$F1 524


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 2132 1.155889 TTGTTAGCGCCATGAGTGTG 58.844 50.0 2.29 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 4135 0.175989 GGAGGGAGCAACTAAGGTCG 59.824 60.0 0.0 0.0 36.9 4.79 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 2047 5.065235 TGCATACATATTGGTGTCTGATGG 58.935 41.667 0.00 0.00 33.62 3.51
249 2132 1.155889 TTGTTAGCGCCATGAGTGTG 58.844 50.000 2.29 0.00 0.00 3.82
370 2259 7.938140 TTTAGCTAGCCAGACAAATGTTTAT 57.062 32.000 12.13 0.00 0.00 1.40
371 2260 5.824904 AGCTAGCCAGACAAATGTTTATG 57.175 39.130 12.13 0.00 0.00 1.90
372 2261 5.256474 AGCTAGCCAGACAAATGTTTATGT 58.744 37.500 12.13 0.00 0.00 2.29
373 2262 5.355350 AGCTAGCCAGACAAATGTTTATGTC 59.645 40.000 12.13 0.00 44.92 3.06
384 2273 9.760660 GACAAATGTTTATGTCTACTTTAGCTG 57.239 33.333 0.00 0.00 42.07 4.24
452 2341 6.158520 TGTTTCCTTCCAGGATATTGAGATCA 59.841 38.462 0.00 0.00 45.34 2.92
706 2650 7.173390 GGTTGCAGTTCTATAACAGAGTCTTTT 59.827 37.037 0.00 0.00 38.12 2.27
819 2763 5.041287 GGACTAAAGGCTTTGTTGTTGTTC 58.959 41.667 22.32 6.66 0.00 3.18
889 2839 3.369756 GCATGATTGCCTGTGTGAATTTG 59.630 43.478 0.00 0.00 43.38 2.32
948 2898 5.179368 CGATAGAGTTTGTTTTCCTTGCAGA 59.821 40.000 0.00 0.00 39.76 4.26
1029 2986 5.340379 GAAATGATTCTCAGGCTGCAGCC 62.340 52.174 44.46 44.46 45.60 4.85
1407 3367 4.394712 CCGGCGCCCTCTCAGTTT 62.395 66.667 23.46 0.00 0.00 2.66
1450 3410 3.379452 GAGATGGAGGAGGAAAGGAAGA 58.621 50.000 0.00 0.00 0.00 2.87
1476 3436 2.808543 GCGAGAAAAGCTGAAGAAGGAA 59.191 45.455 0.00 0.00 0.00 3.36
1548 3508 2.643272 GCGTCGGTGTCTGACTCA 59.357 61.111 9.51 0.00 34.17 3.41
1593 3553 1.728672 CGGCTCCGAGTACTCTTCC 59.271 63.158 20.34 13.55 42.83 3.46
1683 3643 1.001406 CAGAAGAAGAGAAGGCACCGT 59.999 52.381 0.00 0.00 0.00 4.83
1704 3673 1.359475 GGATAGCACGTCGTCCTCC 59.641 63.158 0.00 0.00 0.00 4.30
1705 3674 1.102222 GGATAGCACGTCGTCCTCCT 61.102 60.000 0.00 0.00 0.00 3.69
1706 3675 0.308376 GATAGCACGTCGTCCTCCTC 59.692 60.000 0.00 0.00 0.00 3.71
1740 3709 2.370349 TCTGAGTCCGAGTCTGATTCC 58.630 52.381 8.36 0.00 0.00 3.01
1809 3778 1.153549 GCGCCGATCCTGAAGAACT 60.154 57.895 0.00 0.00 0.00 3.01
1826 3795 4.373551 TGGAGAAGGCGCCAGATA 57.626 55.556 31.54 6.62 39.19 1.98
1862 3831 4.202050 GCCCACATATCATGTCCTTTTCAC 60.202 45.833 0.00 0.00 42.70 3.18
1870 3839 0.823356 TGTCCTTTTCACTGCAGCCC 60.823 55.000 15.27 0.00 0.00 5.19
1908 3877 2.545946 GCGCCCTTTCAAGAGATGTATC 59.454 50.000 0.00 0.00 0.00 2.24
1911 3880 2.797156 CCCTTTCAAGAGATGTATCGCG 59.203 50.000 0.00 0.00 0.00 5.87
1919 3888 5.858581 TCAAGAGATGTATCGCGAATGTATG 59.141 40.000 15.24 4.29 0.00 2.39
1974 3943 2.859165 TTGTTCTCCCTGTGCTAAGG 57.141 50.000 0.00 0.00 37.05 2.69
2029 3999 3.755378 ACTTGGAAGTGCTTGAAGCTATG 59.245 43.478 18.94 2.95 42.97 2.23
2045 4015 5.248380 AGCTATGGATTGTTTCCTATCCC 57.752 43.478 0.00 0.00 45.68 3.85
2080 4050 3.192844 AGCATCAGAAAATCCTGCAACTG 59.807 43.478 0.00 0.00 35.32 3.16
2087 4057 6.372659 TCAGAAAATCCTGCAACTGTATTCTC 59.627 38.462 0.00 0.00 34.28 2.87
2088 4058 5.649831 AGAAAATCCTGCAACTGTATTCTCC 59.350 40.000 0.00 0.00 0.00 3.71
2142 4112 7.924940 TGCTGTGCAATAATCGTTTGATATTA 58.075 30.769 0.00 0.00 34.76 0.98
2172 4143 6.758416 TGTGAAGATGATCATTTCGACCTTAG 59.242 38.462 10.14 0.00 0.00 2.18
2175 4146 7.278646 TGAAGATGATCATTTCGACCTTAGTTG 59.721 37.037 10.14 0.00 0.00 3.16
2185 4156 1.483004 GACCTTAGTTGCTCCCTCCTC 59.517 57.143 0.00 0.00 0.00 3.71
2188 4159 0.614979 TTAGTTGCTCCCTCCTCGCT 60.615 55.000 0.00 0.00 0.00 4.93
2238 4209 9.811995 AAAAGGTCAAACTTTGTAAACCTTATC 57.188 29.630 19.25 0.00 41.69 1.75
2240 4211 7.937649 AGGTCAAACTTTGTAAACCTTATCAC 58.062 34.615 7.32 0.00 33.12 3.06
2241 4212 7.558444 AGGTCAAACTTTGTAAACCTTATCACA 59.442 33.333 7.32 0.00 33.12 3.58
2242 4213 8.192110 GGTCAAACTTTGTAAACCTTATCACAA 58.808 33.333 1.44 0.00 0.00 3.33
2297 4268 5.883661 ACAAAATCAGTGCCATTAGATTCG 58.116 37.500 0.00 0.00 30.87 3.34
2307 4278 6.992123 AGTGCCATTAGATTCGTCATAATGAA 59.008 34.615 5.88 0.00 38.57 2.57
2309 4280 6.204688 TGCCATTAGATTCGTCATAATGAACC 59.795 38.462 5.88 0.00 38.57 3.62
2310 4281 6.428159 GCCATTAGATTCGTCATAATGAACCT 59.572 38.462 5.88 0.00 38.57 3.50
2357 4338 4.708726 AATGTTCATTACAGCTCTTGCC 57.291 40.909 0.00 0.00 40.83 4.52
2363 4344 2.380084 TTACAGCTCTTGCCTAACCG 57.620 50.000 0.00 0.00 40.80 4.44
2370 4351 0.321298 TCTTGCCTAACCGCTTGACC 60.321 55.000 0.00 0.00 0.00 4.02
2375 4356 0.515564 CCTAACCGCTTGACCGTTTG 59.484 55.000 0.00 0.00 0.00 2.93
2376 4357 1.504359 CTAACCGCTTGACCGTTTGA 58.496 50.000 0.00 0.00 0.00 2.69
2378 4359 1.441732 AACCGCTTGACCGTTTGACC 61.442 55.000 0.00 0.00 0.00 4.02
2379 4360 2.549282 CGCTTGACCGTTTGACCG 59.451 61.111 0.00 0.00 0.00 4.79
2380 4361 1.952133 CGCTTGACCGTTTGACCGA 60.952 57.895 0.00 0.00 0.00 4.69
2383 4367 1.554042 CTTGACCGTTTGACCGACCG 61.554 60.000 0.00 0.00 0.00 4.79
2431 4415 2.357517 GTCCGGCACTGACAGTGG 60.358 66.667 31.47 18.58 46.01 4.00
2436 4420 2.042831 GGCACTGACAGTGGGATGC 61.043 63.158 31.47 19.31 46.01 3.91
2438 4422 1.377725 CACTGACAGTGGGATGCCC 60.378 63.158 25.22 0.00 42.35 5.36
2448 4432 2.281345 GGATGCCCGATGAGCTGG 60.281 66.667 0.00 0.00 0.00 4.85
2449 4433 2.507944 GATGCCCGATGAGCTGGT 59.492 61.111 0.00 0.00 0.00 4.00
2607 4596 1.134250 GCCTTCAAGATCCTCCAGGTC 60.134 57.143 0.00 0.00 36.34 3.85
2608 4597 1.488393 CCTTCAAGATCCTCCAGGTCC 59.512 57.143 0.00 0.00 36.34 4.46
2612 4601 1.409427 CAAGATCCTCCAGGTCCGTAC 59.591 57.143 0.00 0.00 36.34 3.67
2627 4623 4.189188 TACCTTCGCTCGCTCGCC 62.189 66.667 0.00 0.00 0.00 5.54
2639 4635 2.109181 CTCGCCCGATTTCCCCTC 59.891 66.667 0.00 0.00 0.00 4.30
2640 4636 3.792053 CTCGCCCGATTTCCCCTCG 62.792 68.421 0.00 0.00 35.92 4.63
2643 4639 2.203070 CCCGATTTCCCCTCGCTG 60.203 66.667 0.00 0.00 34.84 5.18
2646 4642 2.517166 GATTTCCCCTCGCTGCCC 60.517 66.667 0.00 0.00 0.00 5.36
2647 4643 4.489771 ATTTCCCCTCGCTGCCCG 62.490 66.667 0.00 0.00 38.61 6.13
2663 4659 4.711949 CGCTGACCCCTGCTTGCT 62.712 66.667 0.00 0.00 35.41 3.91
2664 4660 2.282745 GCTGACCCCTGCTTGCTT 60.283 61.111 0.00 0.00 34.82 3.91
2673 4669 3.324099 CTGCTTGCTTGCTCGCTGG 62.324 63.158 3.47 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 1974 7.440856 TGACGCATATGAACTGAGCAATAATAA 59.559 33.333 6.97 0.00 0.00 1.40
100 1983 5.536554 AACTTTGACGCATATGAACTGAG 57.463 39.130 6.97 0.00 0.00 3.35
164 2047 9.848172 CTGCTTAAACATTAAACAAATCAACAC 57.152 29.630 0.00 0.00 0.00 3.32
195 2078 8.526667 AGAGACTCTGTTATAGAATAGCAACA 57.473 34.615 3.56 0.00 34.32 3.33
223 2106 4.941263 ACTCATGGCGCTAACAAAATCTAA 59.059 37.500 7.64 0.00 0.00 2.10
249 2132 0.969149 CTTGGGAGGGCAAGAAAACC 59.031 55.000 0.00 0.00 0.00 3.27
370 2259 7.761704 GTCATCATCTTTCAGCTAAAGTAGACA 59.238 37.037 12.43 0.00 44.27 3.41
371 2260 7.223777 GGTCATCATCTTTCAGCTAAAGTAGAC 59.776 40.741 12.43 12.57 44.27 2.59
372 2261 7.124901 AGGTCATCATCTTTCAGCTAAAGTAGA 59.875 37.037 12.43 11.72 44.27 2.59
373 2262 7.271511 AGGTCATCATCTTTCAGCTAAAGTAG 58.728 38.462 12.43 8.44 44.27 2.57
374 2263 7.187824 AGGTCATCATCTTTCAGCTAAAGTA 57.812 36.000 12.43 4.29 44.27 2.24
375 2264 6.059787 AGGTCATCATCTTTCAGCTAAAGT 57.940 37.500 12.43 2.53 44.27 2.66
384 2273 2.854777 CGTGACGAGGTCATCATCTTTC 59.145 50.000 0.00 0.00 44.63 2.62
452 2341 3.836562 AGAAACGGTTATACAGGACCAGT 59.163 43.478 0.00 0.00 35.63 4.00
605 2548 6.883756 TGCATATCACAAATAAACCTCTCACA 59.116 34.615 0.00 0.00 0.00 3.58
706 2650 3.926527 CACAGCGCTAACAAGATCTACAA 59.073 43.478 10.99 0.00 0.00 2.41
819 2763 6.847792 CACGCTATTCATTTACTGCATACAAG 59.152 38.462 0.00 0.00 0.00 3.16
878 2828 6.127925 GCCATGACTTATCTCAAATTCACACA 60.128 38.462 0.00 0.00 0.00 3.72
889 2839 4.040217 AGTGATGAGGCCATGACTTATCTC 59.960 45.833 5.01 14.57 43.19 2.75
948 2898 6.165700 ACAAGACCAGCAAATCTGAAAATT 57.834 33.333 0.00 0.00 45.72 1.82
1029 2986 1.398390 GCCTGTGCCTTTATTCTGTCG 59.602 52.381 0.00 0.00 0.00 4.35
1395 3355 1.239347 GGTTCACAAACTGAGAGGGC 58.761 55.000 0.00 0.00 35.61 5.19
1407 3367 2.325661 TCTCCAGATCAGGGTTCACA 57.674 50.000 4.05 0.00 0.00 3.58
1450 3410 3.603532 TCTTCAGCTTTTCTCGCATCAT 58.396 40.909 0.00 0.00 0.00 2.45
1476 3436 4.170468 TGCCTTCCTTTTCTCAGACTTT 57.830 40.909 0.00 0.00 0.00 2.66
1548 3508 3.631686 CCGATGATTCAGAGTCTGAGTCT 59.368 47.826 33.04 23.29 44.15 3.24
1683 3643 0.182061 AGGACGACGTGCTATCCCTA 59.818 55.000 21.16 0.00 31.10 3.53
1689 3649 1.748122 GGAGGAGGACGACGTGCTA 60.748 63.158 22.49 0.00 33.56 3.49
1704 3673 4.217510 ACTCAGATTCAGATCCAGAGGAG 58.782 47.826 0.00 0.00 38.38 3.69
1705 3674 4.214310 GACTCAGATTCAGATCCAGAGGA 58.786 47.826 0.00 0.00 38.38 3.71
1706 3675 3.321682 GGACTCAGATTCAGATCCAGAGG 59.678 52.174 0.00 0.00 38.38 3.69
1740 3709 1.298157 TGCCTTTGCCGTCAGAATCG 61.298 55.000 0.00 0.00 36.33 3.34
1755 3724 2.985456 CTCTTCTTCCGGCTGCCT 59.015 61.111 17.92 0.00 0.00 4.75
1809 3778 1.823295 GTATCTGGCGCCTTCTCCA 59.177 57.895 29.70 4.55 0.00 3.86
1908 3877 4.271049 AGGAAATCAACTCATACATTCGCG 59.729 41.667 0.00 0.00 0.00 5.87
1911 3880 7.182761 CGTTCAGGAAATCAACTCATACATTC 58.817 38.462 0.00 0.00 0.00 2.67
1919 3888 4.495422 TCTAGCGTTCAGGAAATCAACTC 58.505 43.478 0.00 0.00 0.00 3.01
2062 4032 6.240894 AGAATACAGTTGCAGGATTTTCTGA 58.759 36.000 0.00 0.00 36.93 3.27
2066 4036 4.706962 GGGAGAATACAGTTGCAGGATTTT 59.293 41.667 0.00 0.00 0.00 1.82
2080 4050 6.107901 AGCTTACAGATGATGGGAGAATAC 57.892 41.667 0.00 0.00 0.00 1.89
2087 4057 4.012374 ACAACAAGCTTACAGATGATGGG 58.988 43.478 0.00 0.00 0.00 4.00
2088 4058 4.673580 GCACAACAAGCTTACAGATGATGG 60.674 45.833 0.00 0.00 0.00 3.51
2142 4112 7.756722 GGTCGAAATGATCATCTTCACAAAAAT 59.243 33.333 9.06 0.00 0.00 1.82
2156 4126 4.271291 GGAGCAACTAAGGTCGAAATGATC 59.729 45.833 0.00 0.00 36.90 2.92
2158 4128 3.596214 GGAGCAACTAAGGTCGAAATGA 58.404 45.455 0.00 0.00 36.90 2.57
2164 4135 0.175989 GGAGGGAGCAACTAAGGTCG 59.824 60.000 0.00 0.00 36.90 4.79
2172 4143 2.125350 CAGCGAGGAGGGAGCAAC 60.125 66.667 0.00 0.00 0.00 4.17
2175 4146 0.753262 TAATTCAGCGAGGAGGGAGC 59.247 55.000 0.00 0.00 0.00 4.70
2266 4237 9.289303 CTAATGGCACTGATTTTGTATTGTAAC 57.711 33.333 0.00 0.00 0.00 2.50
2357 4338 1.193874 GTCAAACGGTCAAGCGGTTAG 59.806 52.381 4.41 0.79 39.29 2.34
2363 4344 1.568025 GTCGGTCAAACGGTCAAGC 59.432 57.895 0.00 0.00 0.00 4.01
2370 4351 2.051076 TCGTCGGTCGGTCAAACG 60.051 61.111 0.00 0.00 40.32 3.60
2375 4356 1.134281 GAAGACTCGTCGGTCGGTC 59.866 63.158 7.81 7.67 40.76 4.79
2376 4357 2.675056 CGAAGACTCGTCGGTCGGT 61.675 63.158 14.39 2.12 40.33 4.69
2383 4367 1.226073 GACTCGCCGAAGACTCGTC 60.226 63.158 0.00 0.00 43.87 4.20
2417 4401 1.742880 CATCCCACTGTCAGTGCCG 60.743 63.158 25.00 17.14 44.63 5.69
2425 4409 1.976132 CTCATCGGGCATCCCACTGT 61.976 60.000 2.47 0.00 45.83 3.55
2431 4415 2.281345 CCAGCTCATCGGGCATCC 60.281 66.667 0.00 0.00 0.00 3.51
2436 4420 4.227134 CCGGACCAGCTCATCGGG 62.227 72.222 0.00 6.08 37.35 5.14
2438 4422 2.105128 GACCGGACCAGCTCATCG 59.895 66.667 9.46 0.00 0.00 3.84
2439 4423 1.439644 GAGACCGGACCAGCTCATC 59.560 63.158 9.46 0.00 0.00 2.92
2440 4424 2.060980 GGAGACCGGACCAGCTCAT 61.061 63.158 9.46 0.00 0.00 2.90
2441 4425 2.680352 GGAGACCGGACCAGCTCA 60.680 66.667 9.46 0.00 0.00 4.26
2442 4426 2.363147 AGGAGACCGGACCAGCTC 60.363 66.667 9.46 6.48 0.00 4.09
2443 4427 2.363147 GAGGAGACCGGACCAGCT 60.363 66.667 9.46 0.00 0.00 4.24
2445 4429 2.115911 CGAGAGGAGACCGGACCAG 61.116 68.421 9.46 0.00 0.00 4.00
2448 4432 2.438795 AGCGAGAGGAGACCGGAC 60.439 66.667 9.46 0.10 0.00 4.79
2449 4433 2.124653 GAGCGAGAGGAGACCGGA 60.125 66.667 9.46 0.00 0.00 5.14
2607 4596 2.278013 GAGCGAGCGAAGGTACGG 60.278 66.667 0.00 0.00 39.88 4.02
2608 4597 2.648102 CGAGCGAGCGAAGGTACG 60.648 66.667 0.00 0.00 39.88 3.67
2627 4623 2.897350 GCAGCGAGGGGAAATCGG 60.897 66.667 0.00 0.00 40.50 4.18
2630 4626 4.489771 CGGGCAGCGAGGGGAAAT 62.490 66.667 0.00 0.00 0.00 2.17
2646 4642 4.711949 AGCAAGCAGGGGTCAGCG 62.712 66.667 0.00 0.00 35.48 5.18
2647 4643 2.282745 AAGCAAGCAGGGGTCAGC 60.283 61.111 0.00 0.00 0.00 4.26
2649 4645 2.598394 GCAAGCAAGCAGGGGTCA 60.598 61.111 0.00 0.00 0.00 4.02
2650 4646 2.282745 AGCAAGCAAGCAGGGGTC 60.283 61.111 3.19 0.00 36.85 4.46
2651 4647 2.282745 GAGCAAGCAAGCAGGGGT 60.283 61.111 3.19 0.00 36.85 4.95
2652 4648 3.437795 CGAGCAAGCAAGCAGGGG 61.438 66.667 3.19 0.00 36.85 4.79
2653 4649 4.112341 GCGAGCAAGCAAGCAGGG 62.112 66.667 3.19 0.00 36.85 4.45
2656 4652 3.359523 CCAGCGAGCAAGCAAGCA 61.360 61.111 12.73 0.00 40.15 3.91
2657 4653 4.773117 GCCAGCGAGCAAGCAAGC 62.773 66.667 6.21 4.42 40.15 4.01
2658 4654 4.456253 CGCCAGCGAGCAAGCAAG 62.456 66.667 6.06 0.00 42.83 4.01
2661 4657 4.748679 CAACGCCAGCGAGCAAGC 62.749 66.667 20.32 0.00 42.83 4.01
2662 4658 3.300667 GACAACGCCAGCGAGCAAG 62.301 63.158 20.32 5.81 42.83 4.01
2663 4659 3.345808 GACAACGCCAGCGAGCAA 61.346 61.111 20.32 0.00 42.83 3.91
2664 4660 4.600576 TGACAACGCCAGCGAGCA 62.601 61.111 20.32 7.80 42.83 4.26
2673 4669 4.980805 TCCGCCACCTGACAACGC 62.981 66.667 0.00 0.00 0.00 4.84



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.