Multiple sequence alignment - TraesCS7A01G422700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7A01G422700
chr7A
100.000
2804
0
0
1
2804
613175735
613178538
0.000000e+00
5179.0
1
TraesCS7A01G422700
chr7A
100.000
29
0
0
2772
2800
613470113
613470141
1.000000e-03
54.7
2
TraesCS7A01G422700
chr7D
91.927
2341
119
43
507
2804
533757359
533759672
0.000000e+00
3212.0
3
TraesCS7A01G422700
chr7D
94.083
507
24
4
4
506
533756800
533757304
0.000000e+00
765.0
4
TraesCS7A01G422700
chr7B
91.970
2304
135
30
507
2800
573922452
573924715
0.000000e+00
3184.0
5
TraesCS7A01G422700
chr7B
93.349
436
22
2
71
506
573921969
573922397
3.050000e-179
638.0
6
TraesCS7A01G422700
chr7B
98.507
67
1
0
1
67
573920019
573920085
4.910000e-23
119.0
7
TraesCS7A01G422700
chr5A
82.517
858
111
23
972
1816
18389855
18389024
0.000000e+00
717.0
8
TraesCS7A01G422700
chrUn
91.912
408
30
3
2393
2799
122475472
122475877
4.050000e-158
568.0
9
TraesCS7A01G422700
chr5D
86.038
530
65
7
911
1435
26531865
26532390
6.780000e-156
560.0
10
TraesCS7A01G422700
chr2D
76.522
460
94
11
1047
1499
94328855
94328403
3.610000e-59
239.0
11
TraesCS7A01G422700
chr2B
75.930
457
102
6
1047
1499
146451971
146451519
7.810000e-56
228.0
12
TraesCS7A01G422700
chr2B
86.441
59
5
3
787
844
554161796
554161852
8.390000e-06
62.1
13
TraesCS7A01G422700
chr2A
95.556
45
2
0
787
831
145445573
145445617
3.870000e-09
73.1
14
TraesCS7A01G422700
chr2A
90.000
50
4
1
790
838
450064352
450064303
2.330000e-06
63.9
15
TraesCS7A01G422700
chr5B
91.837
49
3
1
787
835
690032849
690032802
1.800000e-07
67.6
16
TraesCS7A01G422700
chr6A
90.196
51
2
3
790
840
60432934
60432887
2.330000e-06
63.9
17
TraesCS7A01G422700
chr1B
88.679
53
5
1
790
842
667074717
667074666
2.330000e-06
63.9
18
TraesCS7A01G422700
chr1D
87.500
56
4
3
787
841
225403957
225404010
8.390000e-06
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7A01G422700
chr7A
613175735
613178538
2803
False
5179.000000
5179
100.000000
1
2804
1
chr7A.!!$F1
2803
1
TraesCS7A01G422700
chr7D
533756800
533759672
2872
False
1988.500000
3212
93.005000
4
2804
2
chr7D.!!$F1
2800
2
TraesCS7A01G422700
chr7B
573920019
573924715
4696
False
1313.666667
3184
94.608667
1
2800
3
chr7B.!!$F1
2799
3
TraesCS7A01G422700
chr5A
18389024
18389855
831
True
717.000000
717
82.517000
972
1816
1
chr5A.!!$R1
844
4
TraesCS7A01G422700
chr5D
26531865
26532390
525
False
560.000000
560
86.038000
911
1435
1
chr5D.!!$F1
524
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
249
2132
1.155889
TTGTTAGCGCCATGAGTGTG
58.844
50.0
2.29
0.0
0.0
3.82
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2164
4135
0.175989
GGAGGGAGCAACTAAGGTCG
59.824
60.0
0.0
0.0
36.9
4.79
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
164
2047
5.065235
TGCATACATATTGGTGTCTGATGG
58.935
41.667
0.00
0.00
33.62
3.51
249
2132
1.155889
TTGTTAGCGCCATGAGTGTG
58.844
50.000
2.29
0.00
0.00
3.82
370
2259
7.938140
TTTAGCTAGCCAGACAAATGTTTAT
57.062
32.000
12.13
0.00
0.00
1.40
371
2260
5.824904
AGCTAGCCAGACAAATGTTTATG
57.175
39.130
12.13
0.00
0.00
1.90
372
2261
5.256474
AGCTAGCCAGACAAATGTTTATGT
58.744
37.500
12.13
0.00
0.00
2.29
373
2262
5.355350
AGCTAGCCAGACAAATGTTTATGTC
59.645
40.000
12.13
0.00
44.92
3.06
384
2273
9.760660
GACAAATGTTTATGTCTACTTTAGCTG
57.239
33.333
0.00
0.00
42.07
4.24
452
2341
6.158520
TGTTTCCTTCCAGGATATTGAGATCA
59.841
38.462
0.00
0.00
45.34
2.92
706
2650
7.173390
GGTTGCAGTTCTATAACAGAGTCTTTT
59.827
37.037
0.00
0.00
38.12
2.27
819
2763
5.041287
GGACTAAAGGCTTTGTTGTTGTTC
58.959
41.667
22.32
6.66
0.00
3.18
889
2839
3.369756
GCATGATTGCCTGTGTGAATTTG
59.630
43.478
0.00
0.00
43.38
2.32
948
2898
5.179368
CGATAGAGTTTGTTTTCCTTGCAGA
59.821
40.000
0.00
0.00
39.76
4.26
1029
2986
5.340379
GAAATGATTCTCAGGCTGCAGCC
62.340
52.174
44.46
44.46
45.60
4.85
1407
3367
4.394712
CCGGCGCCCTCTCAGTTT
62.395
66.667
23.46
0.00
0.00
2.66
1450
3410
3.379452
GAGATGGAGGAGGAAAGGAAGA
58.621
50.000
0.00
0.00
0.00
2.87
1476
3436
2.808543
GCGAGAAAAGCTGAAGAAGGAA
59.191
45.455
0.00
0.00
0.00
3.36
1548
3508
2.643272
GCGTCGGTGTCTGACTCA
59.357
61.111
9.51
0.00
34.17
3.41
1593
3553
1.728672
CGGCTCCGAGTACTCTTCC
59.271
63.158
20.34
13.55
42.83
3.46
1683
3643
1.001406
CAGAAGAAGAGAAGGCACCGT
59.999
52.381
0.00
0.00
0.00
4.83
1704
3673
1.359475
GGATAGCACGTCGTCCTCC
59.641
63.158
0.00
0.00
0.00
4.30
1705
3674
1.102222
GGATAGCACGTCGTCCTCCT
61.102
60.000
0.00
0.00
0.00
3.69
1706
3675
0.308376
GATAGCACGTCGTCCTCCTC
59.692
60.000
0.00
0.00
0.00
3.71
1740
3709
2.370349
TCTGAGTCCGAGTCTGATTCC
58.630
52.381
8.36
0.00
0.00
3.01
1809
3778
1.153549
GCGCCGATCCTGAAGAACT
60.154
57.895
0.00
0.00
0.00
3.01
1826
3795
4.373551
TGGAGAAGGCGCCAGATA
57.626
55.556
31.54
6.62
39.19
1.98
1862
3831
4.202050
GCCCACATATCATGTCCTTTTCAC
60.202
45.833
0.00
0.00
42.70
3.18
1870
3839
0.823356
TGTCCTTTTCACTGCAGCCC
60.823
55.000
15.27
0.00
0.00
5.19
1908
3877
2.545946
GCGCCCTTTCAAGAGATGTATC
59.454
50.000
0.00
0.00
0.00
2.24
1911
3880
2.797156
CCCTTTCAAGAGATGTATCGCG
59.203
50.000
0.00
0.00
0.00
5.87
1919
3888
5.858581
TCAAGAGATGTATCGCGAATGTATG
59.141
40.000
15.24
4.29
0.00
2.39
1974
3943
2.859165
TTGTTCTCCCTGTGCTAAGG
57.141
50.000
0.00
0.00
37.05
2.69
2029
3999
3.755378
ACTTGGAAGTGCTTGAAGCTATG
59.245
43.478
18.94
2.95
42.97
2.23
2045
4015
5.248380
AGCTATGGATTGTTTCCTATCCC
57.752
43.478
0.00
0.00
45.68
3.85
2080
4050
3.192844
AGCATCAGAAAATCCTGCAACTG
59.807
43.478
0.00
0.00
35.32
3.16
2087
4057
6.372659
TCAGAAAATCCTGCAACTGTATTCTC
59.627
38.462
0.00
0.00
34.28
2.87
2088
4058
5.649831
AGAAAATCCTGCAACTGTATTCTCC
59.350
40.000
0.00
0.00
0.00
3.71
2142
4112
7.924940
TGCTGTGCAATAATCGTTTGATATTA
58.075
30.769
0.00
0.00
34.76
0.98
2172
4143
6.758416
TGTGAAGATGATCATTTCGACCTTAG
59.242
38.462
10.14
0.00
0.00
2.18
2175
4146
7.278646
TGAAGATGATCATTTCGACCTTAGTTG
59.721
37.037
10.14
0.00
0.00
3.16
2185
4156
1.483004
GACCTTAGTTGCTCCCTCCTC
59.517
57.143
0.00
0.00
0.00
3.71
2188
4159
0.614979
TTAGTTGCTCCCTCCTCGCT
60.615
55.000
0.00
0.00
0.00
4.93
2238
4209
9.811995
AAAAGGTCAAACTTTGTAAACCTTATC
57.188
29.630
19.25
0.00
41.69
1.75
2240
4211
7.937649
AGGTCAAACTTTGTAAACCTTATCAC
58.062
34.615
7.32
0.00
33.12
3.06
2241
4212
7.558444
AGGTCAAACTTTGTAAACCTTATCACA
59.442
33.333
7.32
0.00
33.12
3.58
2242
4213
8.192110
GGTCAAACTTTGTAAACCTTATCACAA
58.808
33.333
1.44
0.00
0.00
3.33
2297
4268
5.883661
ACAAAATCAGTGCCATTAGATTCG
58.116
37.500
0.00
0.00
30.87
3.34
2307
4278
6.992123
AGTGCCATTAGATTCGTCATAATGAA
59.008
34.615
5.88
0.00
38.57
2.57
2309
4280
6.204688
TGCCATTAGATTCGTCATAATGAACC
59.795
38.462
5.88
0.00
38.57
3.62
2310
4281
6.428159
GCCATTAGATTCGTCATAATGAACCT
59.572
38.462
5.88
0.00
38.57
3.50
2357
4338
4.708726
AATGTTCATTACAGCTCTTGCC
57.291
40.909
0.00
0.00
40.83
4.52
2363
4344
2.380084
TTACAGCTCTTGCCTAACCG
57.620
50.000
0.00
0.00
40.80
4.44
2370
4351
0.321298
TCTTGCCTAACCGCTTGACC
60.321
55.000
0.00
0.00
0.00
4.02
2375
4356
0.515564
CCTAACCGCTTGACCGTTTG
59.484
55.000
0.00
0.00
0.00
2.93
2376
4357
1.504359
CTAACCGCTTGACCGTTTGA
58.496
50.000
0.00
0.00
0.00
2.69
2378
4359
1.441732
AACCGCTTGACCGTTTGACC
61.442
55.000
0.00
0.00
0.00
4.02
2379
4360
2.549282
CGCTTGACCGTTTGACCG
59.451
61.111
0.00
0.00
0.00
4.79
2380
4361
1.952133
CGCTTGACCGTTTGACCGA
60.952
57.895
0.00
0.00
0.00
4.69
2383
4367
1.554042
CTTGACCGTTTGACCGACCG
61.554
60.000
0.00
0.00
0.00
4.79
2431
4415
2.357517
GTCCGGCACTGACAGTGG
60.358
66.667
31.47
18.58
46.01
4.00
2436
4420
2.042831
GGCACTGACAGTGGGATGC
61.043
63.158
31.47
19.31
46.01
3.91
2438
4422
1.377725
CACTGACAGTGGGATGCCC
60.378
63.158
25.22
0.00
42.35
5.36
2448
4432
2.281345
GGATGCCCGATGAGCTGG
60.281
66.667
0.00
0.00
0.00
4.85
2449
4433
2.507944
GATGCCCGATGAGCTGGT
59.492
61.111
0.00
0.00
0.00
4.00
2607
4596
1.134250
GCCTTCAAGATCCTCCAGGTC
60.134
57.143
0.00
0.00
36.34
3.85
2608
4597
1.488393
CCTTCAAGATCCTCCAGGTCC
59.512
57.143
0.00
0.00
36.34
4.46
2612
4601
1.409427
CAAGATCCTCCAGGTCCGTAC
59.591
57.143
0.00
0.00
36.34
3.67
2627
4623
4.189188
TACCTTCGCTCGCTCGCC
62.189
66.667
0.00
0.00
0.00
5.54
2639
4635
2.109181
CTCGCCCGATTTCCCCTC
59.891
66.667
0.00
0.00
0.00
4.30
2640
4636
3.792053
CTCGCCCGATTTCCCCTCG
62.792
68.421
0.00
0.00
35.92
4.63
2643
4639
2.203070
CCCGATTTCCCCTCGCTG
60.203
66.667
0.00
0.00
34.84
5.18
2646
4642
2.517166
GATTTCCCCTCGCTGCCC
60.517
66.667
0.00
0.00
0.00
5.36
2647
4643
4.489771
ATTTCCCCTCGCTGCCCG
62.490
66.667
0.00
0.00
38.61
6.13
2663
4659
4.711949
CGCTGACCCCTGCTTGCT
62.712
66.667
0.00
0.00
35.41
3.91
2664
4660
2.282745
GCTGACCCCTGCTTGCTT
60.283
61.111
0.00
0.00
34.82
3.91
2673
4669
3.324099
CTGCTTGCTTGCTCGCTGG
62.324
63.158
3.47
0.00
0.00
4.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
91
1974
7.440856
TGACGCATATGAACTGAGCAATAATAA
59.559
33.333
6.97
0.00
0.00
1.40
100
1983
5.536554
AACTTTGACGCATATGAACTGAG
57.463
39.130
6.97
0.00
0.00
3.35
164
2047
9.848172
CTGCTTAAACATTAAACAAATCAACAC
57.152
29.630
0.00
0.00
0.00
3.32
195
2078
8.526667
AGAGACTCTGTTATAGAATAGCAACA
57.473
34.615
3.56
0.00
34.32
3.33
223
2106
4.941263
ACTCATGGCGCTAACAAAATCTAA
59.059
37.500
7.64
0.00
0.00
2.10
249
2132
0.969149
CTTGGGAGGGCAAGAAAACC
59.031
55.000
0.00
0.00
0.00
3.27
370
2259
7.761704
GTCATCATCTTTCAGCTAAAGTAGACA
59.238
37.037
12.43
0.00
44.27
3.41
371
2260
7.223777
GGTCATCATCTTTCAGCTAAAGTAGAC
59.776
40.741
12.43
12.57
44.27
2.59
372
2261
7.124901
AGGTCATCATCTTTCAGCTAAAGTAGA
59.875
37.037
12.43
11.72
44.27
2.59
373
2262
7.271511
AGGTCATCATCTTTCAGCTAAAGTAG
58.728
38.462
12.43
8.44
44.27
2.57
374
2263
7.187824
AGGTCATCATCTTTCAGCTAAAGTA
57.812
36.000
12.43
4.29
44.27
2.24
375
2264
6.059787
AGGTCATCATCTTTCAGCTAAAGT
57.940
37.500
12.43
2.53
44.27
2.66
384
2273
2.854777
CGTGACGAGGTCATCATCTTTC
59.145
50.000
0.00
0.00
44.63
2.62
452
2341
3.836562
AGAAACGGTTATACAGGACCAGT
59.163
43.478
0.00
0.00
35.63
4.00
605
2548
6.883756
TGCATATCACAAATAAACCTCTCACA
59.116
34.615
0.00
0.00
0.00
3.58
706
2650
3.926527
CACAGCGCTAACAAGATCTACAA
59.073
43.478
10.99
0.00
0.00
2.41
819
2763
6.847792
CACGCTATTCATTTACTGCATACAAG
59.152
38.462
0.00
0.00
0.00
3.16
878
2828
6.127925
GCCATGACTTATCTCAAATTCACACA
60.128
38.462
0.00
0.00
0.00
3.72
889
2839
4.040217
AGTGATGAGGCCATGACTTATCTC
59.960
45.833
5.01
14.57
43.19
2.75
948
2898
6.165700
ACAAGACCAGCAAATCTGAAAATT
57.834
33.333
0.00
0.00
45.72
1.82
1029
2986
1.398390
GCCTGTGCCTTTATTCTGTCG
59.602
52.381
0.00
0.00
0.00
4.35
1395
3355
1.239347
GGTTCACAAACTGAGAGGGC
58.761
55.000
0.00
0.00
35.61
5.19
1407
3367
2.325661
TCTCCAGATCAGGGTTCACA
57.674
50.000
4.05
0.00
0.00
3.58
1450
3410
3.603532
TCTTCAGCTTTTCTCGCATCAT
58.396
40.909
0.00
0.00
0.00
2.45
1476
3436
4.170468
TGCCTTCCTTTTCTCAGACTTT
57.830
40.909
0.00
0.00
0.00
2.66
1548
3508
3.631686
CCGATGATTCAGAGTCTGAGTCT
59.368
47.826
33.04
23.29
44.15
3.24
1683
3643
0.182061
AGGACGACGTGCTATCCCTA
59.818
55.000
21.16
0.00
31.10
3.53
1689
3649
1.748122
GGAGGAGGACGACGTGCTA
60.748
63.158
22.49
0.00
33.56
3.49
1704
3673
4.217510
ACTCAGATTCAGATCCAGAGGAG
58.782
47.826
0.00
0.00
38.38
3.69
1705
3674
4.214310
GACTCAGATTCAGATCCAGAGGA
58.786
47.826
0.00
0.00
38.38
3.71
1706
3675
3.321682
GGACTCAGATTCAGATCCAGAGG
59.678
52.174
0.00
0.00
38.38
3.69
1740
3709
1.298157
TGCCTTTGCCGTCAGAATCG
61.298
55.000
0.00
0.00
36.33
3.34
1755
3724
2.985456
CTCTTCTTCCGGCTGCCT
59.015
61.111
17.92
0.00
0.00
4.75
1809
3778
1.823295
GTATCTGGCGCCTTCTCCA
59.177
57.895
29.70
4.55
0.00
3.86
1908
3877
4.271049
AGGAAATCAACTCATACATTCGCG
59.729
41.667
0.00
0.00
0.00
5.87
1911
3880
7.182761
CGTTCAGGAAATCAACTCATACATTC
58.817
38.462
0.00
0.00
0.00
2.67
1919
3888
4.495422
TCTAGCGTTCAGGAAATCAACTC
58.505
43.478
0.00
0.00
0.00
3.01
2062
4032
6.240894
AGAATACAGTTGCAGGATTTTCTGA
58.759
36.000
0.00
0.00
36.93
3.27
2066
4036
4.706962
GGGAGAATACAGTTGCAGGATTTT
59.293
41.667
0.00
0.00
0.00
1.82
2080
4050
6.107901
AGCTTACAGATGATGGGAGAATAC
57.892
41.667
0.00
0.00
0.00
1.89
2087
4057
4.012374
ACAACAAGCTTACAGATGATGGG
58.988
43.478
0.00
0.00
0.00
4.00
2088
4058
4.673580
GCACAACAAGCTTACAGATGATGG
60.674
45.833
0.00
0.00
0.00
3.51
2142
4112
7.756722
GGTCGAAATGATCATCTTCACAAAAAT
59.243
33.333
9.06
0.00
0.00
1.82
2156
4126
4.271291
GGAGCAACTAAGGTCGAAATGATC
59.729
45.833
0.00
0.00
36.90
2.92
2158
4128
3.596214
GGAGCAACTAAGGTCGAAATGA
58.404
45.455
0.00
0.00
36.90
2.57
2164
4135
0.175989
GGAGGGAGCAACTAAGGTCG
59.824
60.000
0.00
0.00
36.90
4.79
2172
4143
2.125350
CAGCGAGGAGGGAGCAAC
60.125
66.667
0.00
0.00
0.00
4.17
2175
4146
0.753262
TAATTCAGCGAGGAGGGAGC
59.247
55.000
0.00
0.00
0.00
4.70
2266
4237
9.289303
CTAATGGCACTGATTTTGTATTGTAAC
57.711
33.333
0.00
0.00
0.00
2.50
2357
4338
1.193874
GTCAAACGGTCAAGCGGTTAG
59.806
52.381
4.41
0.79
39.29
2.34
2363
4344
1.568025
GTCGGTCAAACGGTCAAGC
59.432
57.895
0.00
0.00
0.00
4.01
2370
4351
2.051076
TCGTCGGTCGGTCAAACG
60.051
61.111
0.00
0.00
40.32
3.60
2375
4356
1.134281
GAAGACTCGTCGGTCGGTC
59.866
63.158
7.81
7.67
40.76
4.79
2376
4357
2.675056
CGAAGACTCGTCGGTCGGT
61.675
63.158
14.39
2.12
40.33
4.69
2383
4367
1.226073
GACTCGCCGAAGACTCGTC
60.226
63.158
0.00
0.00
43.87
4.20
2417
4401
1.742880
CATCCCACTGTCAGTGCCG
60.743
63.158
25.00
17.14
44.63
5.69
2425
4409
1.976132
CTCATCGGGCATCCCACTGT
61.976
60.000
2.47
0.00
45.83
3.55
2431
4415
2.281345
CCAGCTCATCGGGCATCC
60.281
66.667
0.00
0.00
0.00
3.51
2436
4420
4.227134
CCGGACCAGCTCATCGGG
62.227
72.222
0.00
6.08
37.35
5.14
2438
4422
2.105128
GACCGGACCAGCTCATCG
59.895
66.667
9.46
0.00
0.00
3.84
2439
4423
1.439644
GAGACCGGACCAGCTCATC
59.560
63.158
9.46
0.00
0.00
2.92
2440
4424
2.060980
GGAGACCGGACCAGCTCAT
61.061
63.158
9.46
0.00
0.00
2.90
2441
4425
2.680352
GGAGACCGGACCAGCTCA
60.680
66.667
9.46
0.00
0.00
4.26
2442
4426
2.363147
AGGAGACCGGACCAGCTC
60.363
66.667
9.46
6.48
0.00
4.09
2443
4427
2.363147
GAGGAGACCGGACCAGCT
60.363
66.667
9.46
0.00
0.00
4.24
2445
4429
2.115911
CGAGAGGAGACCGGACCAG
61.116
68.421
9.46
0.00
0.00
4.00
2448
4432
2.438795
AGCGAGAGGAGACCGGAC
60.439
66.667
9.46
0.10
0.00
4.79
2449
4433
2.124653
GAGCGAGAGGAGACCGGA
60.125
66.667
9.46
0.00
0.00
5.14
2607
4596
2.278013
GAGCGAGCGAAGGTACGG
60.278
66.667
0.00
0.00
39.88
4.02
2608
4597
2.648102
CGAGCGAGCGAAGGTACG
60.648
66.667
0.00
0.00
39.88
3.67
2627
4623
2.897350
GCAGCGAGGGGAAATCGG
60.897
66.667
0.00
0.00
40.50
4.18
2630
4626
4.489771
CGGGCAGCGAGGGGAAAT
62.490
66.667
0.00
0.00
0.00
2.17
2646
4642
4.711949
AGCAAGCAGGGGTCAGCG
62.712
66.667
0.00
0.00
35.48
5.18
2647
4643
2.282745
AAGCAAGCAGGGGTCAGC
60.283
61.111
0.00
0.00
0.00
4.26
2649
4645
2.598394
GCAAGCAAGCAGGGGTCA
60.598
61.111
0.00
0.00
0.00
4.02
2650
4646
2.282745
AGCAAGCAAGCAGGGGTC
60.283
61.111
3.19
0.00
36.85
4.46
2651
4647
2.282745
GAGCAAGCAAGCAGGGGT
60.283
61.111
3.19
0.00
36.85
4.95
2652
4648
3.437795
CGAGCAAGCAAGCAGGGG
61.438
66.667
3.19
0.00
36.85
4.79
2653
4649
4.112341
GCGAGCAAGCAAGCAGGG
62.112
66.667
3.19
0.00
36.85
4.45
2656
4652
3.359523
CCAGCGAGCAAGCAAGCA
61.360
61.111
12.73
0.00
40.15
3.91
2657
4653
4.773117
GCCAGCGAGCAAGCAAGC
62.773
66.667
6.21
4.42
40.15
4.01
2658
4654
4.456253
CGCCAGCGAGCAAGCAAG
62.456
66.667
6.06
0.00
42.83
4.01
2661
4657
4.748679
CAACGCCAGCGAGCAAGC
62.749
66.667
20.32
0.00
42.83
4.01
2662
4658
3.300667
GACAACGCCAGCGAGCAAG
62.301
63.158
20.32
5.81
42.83
4.01
2663
4659
3.345808
GACAACGCCAGCGAGCAA
61.346
61.111
20.32
0.00
42.83
3.91
2664
4660
4.600576
TGACAACGCCAGCGAGCA
62.601
61.111
20.32
7.80
42.83
4.26
2673
4669
4.980805
TCCGCCACCTGACAACGC
62.981
66.667
0.00
0.00
0.00
4.84
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.