Multiple sequence alignment - TraesCS7A01G420800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G420800 chr7A 100.000 3978 0 0 1 3978 611970146 611966169 0.000000e+00 7347.0
1 TraesCS7A01G420800 chr7A 92.194 948 64 5 1407 2349 665946640 665945698 0.000000e+00 1332.0
2 TraesCS7A01G420800 chr7A 82.511 1378 210 24 1937 3299 83259152 83257791 0.000000e+00 1181.0
3 TraesCS7A01G420800 chr7A 90.870 701 44 5 735 1416 665948949 665948250 0.000000e+00 922.0
4 TraesCS7A01G420800 chr7A 89.674 368 26 5 368 734 611776993 611776637 3.620000e-125 459.0
5 TraesCS7A01G420800 chr7A 86.017 236 31 2 64 298 611794450 611794216 6.600000e-63 252.0
6 TraesCS7A01G420800 chr7A 84.783 138 19 2 736 872 637053816 637053952 1.930000e-28 137.0
7 TraesCS7A01G420800 chr7A 81.250 160 27 3 738 896 79126048 79126205 4.170000e-25 126.0
8 TraesCS7A01G420800 chr7A 91.304 46 4 0 2343 2388 665868663 665868618 3.320000e-06 63.9
9 TraesCS7A01G420800 chr3B 90.291 2575 183 30 735 3299 65276092 65278609 0.000000e+00 3308.0
10 TraesCS7A01G420800 chr3B 92.754 552 39 1 3297 3847 65328994 65329545 0.000000e+00 797.0
11 TraesCS7A01G420800 chr6B 96.696 1604 41 3 735 2336 645378255 645376662 0.000000e+00 2658.0
12 TraesCS7A01G420800 chr6B 96.183 262 10 0 3717 3978 645376662 645376401 2.840000e-116 429.0
13 TraesCS7A01G420800 chr3D 84.480 1424 181 24 1889 3299 407493357 407494753 0.000000e+00 1369.0
14 TraesCS7A01G420800 chr3D 78.079 885 136 35 733 1585 407492193 407493051 1.280000e-139 507.0
15 TraesCS7A01G420800 chr3D 88.793 116 13 0 2884 2999 567704800 567704915 4.140000e-30 143.0
16 TraesCS7A01G420800 chr6D 84.275 1380 182 27 1937 3299 379330469 379329108 0.000000e+00 1314.0
17 TraesCS7A01G420800 chr5D 83.297 1383 188 26 1934 3299 512421884 512423240 0.000000e+00 1234.0
18 TraesCS7A01G420800 chr5D 80.620 129 22 3 2080 2207 288131864 288131738 3.270000e-16 97.1
19 TraesCS7A01G420800 chr5B 82.634 1382 198 28 1938 3299 677708600 677707241 0.000000e+00 1184.0
20 TraesCS7A01G420800 chr7D 85.250 739 67 22 7 734 531554384 531553677 0.000000e+00 723.0
21 TraesCS7A01G420800 chr2B 87.578 483 60 0 2335 2817 747861443 747861925 9.650000e-156 560.0
22 TraesCS7A01G420800 chr2B 81.875 480 68 11 1934 2402 747860280 747860751 1.730000e-103 387.0
23 TraesCS7A01G420800 chr2B 85.650 223 29 3 364 586 492148056 492148275 8.600000e-57 231.0
24 TraesCS7A01G420800 chr2B 83.815 173 27 1 1935 2106 511283621 511283449 3.180000e-36 163.0
25 TraesCS7A01G420800 chr2B 77.966 177 30 8 736 908 511284898 511284727 7.030000e-18 102.0
26 TraesCS7A01G420800 chr7B 82.276 615 91 13 1937 2540 612899086 612898479 2.120000e-142 516.0
27 TraesCS7A01G420800 chr7B 75.294 170 40 2 2823 2991 595524247 595524415 3.300000e-11 80.5
28 TraesCS7A01G420800 chr7B 89.091 55 6 0 749 803 636623847 636623901 7.130000e-08 69.4
29 TraesCS7A01G420800 chr2D 84.524 252 33 6 364 612 419783402 419783650 1.100000e-60 244.0
30 TraesCS7A01G420800 chr2A 84.400 250 31 7 364 612 570193155 570192913 5.140000e-59 239.0
31 TraesCS7A01G420800 chr5A 80.296 203 36 4 736 936 592299286 592299486 2.480000e-32 150.0
32 TraesCS7A01G420800 chr1D 82.099 162 26 3 736 896 417252796 417252637 6.930000e-28 135.0
33 TraesCS7A01G420800 chr4A 82.171 129 20 3 2080 2207 137066792 137066666 1.510000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G420800 chr7A 611966169 611970146 3977 True 7347.0 7347 100.0000 1 3978 1 chr7A.!!$R4 3977
1 TraesCS7A01G420800 chr7A 83257791 83259152 1361 True 1181.0 1181 82.5110 1937 3299 1 chr7A.!!$R1 1362
2 TraesCS7A01G420800 chr7A 665945698 665948949 3251 True 1127.0 1332 91.5320 735 2349 2 chr7A.!!$R6 1614
3 TraesCS7A01G420800 chr3B 65276092 65278609 2517 False 3308.0 3308 90.2910 735 3299 1 chr3B.!!$F1 2564
4 TraesCS7A01G420800 chr3B 65328994 65329545 551 False 797.0 797 92.7540 3297 3847 1 chr3B.!!$F2 550
5 TraesCS7A01G420800 chr6B 645376401 645378255 1854 True 1543.5 2658 96.4395 735 3978 2 chr6B.!!$R1 3243
6 TraesCS7A01G420800 chr3D 407492193 407494753 2560 False 938.0 1369 81.2795 733 3299 2 chr3D.!!$F2 2566
7 TraesCS7A01G420800 chr6D 379329108 379330469 1361 True 1314.0 1314 84.2750 1937 3299 1 chr6D.!!$R1 1362
8 TraesCS7A01G420800 chr5D 512421884 512423240 1356 False 1234.0 1234 83.2970 1934 3299 1 chr5D.!!$F1 1365
9 TraesCS7A01G420800 chr5B 677707241 677708600 1359 True 1184.0 1184 82.6340 1938 3299 1 chr5B.!!$R1 1361
10 TraesCS7A01G420800 chr7D 531553677 531554384 707 True 723.0 723 85.2500 7 734 1 chr7D.!!$R1 727
11 TraesCS7A01G420800 chr2B 747860280 747861925 1645 False 473.5 560 84.7265 1934 2817 2 chr2B.!!$F2 883
12 TraesCS7A01G420800 chr7B 612898479 612899086 607 True 516.0 516 82.2760 1937 2540 1 chr7B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 450 0.032130 TAAGGACGAGCGATGATGCC 59.968 55.0 0.00 0.00 34.65 4.40 F
562 574 0.035725 CTCCTTGTGGCTGCTGATCA 60.036 55.0 0.00 0.00 0.00 2.92 F
563 575 0.035725 TCCTTGTGGCTGCTGATCAG 60.036 55.0 18.84 18.84 45.62 2.90 F
679 691 0.108138 CGATCTTCGTTCCAGGGCTT 60.108 55.0 0.00 0.00 34.72 4.35 F
1749 3410 0.250945 TCGAGAGGTGTCTGAGTGCT 60.251 55.0 0.00 0.00 30.97 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 3130 1.202417 CGATTACCTGCGTGTCCATCT 60.202 52.381 0.0 0.0 0.00 2.90 R
2341 4133 2.046023 CTGATCCGGGCAGCACAA 60.046 61.111 0.0 0.0 0.00 3.33 R
2506 5057 5.775195 TCCAAGACTGACATTGTTCTCTCTA 59.225 40.000 0.0 0.0 0.00 2.43 R
2599 5153 1.094785 ACTTGCAACACAGCGTCTTT 58.905 45.000 0.0 0.0 37.31 2.52 R
3560 6134 0.032815 GGCGATCTAGCAGGGAGAAC 59.967 60.000 0.0 0.0 39.27 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.746052 AGCTTACTTTAATATAACCACATGCA 57.254 30.769 0.00 0.00 0.00 3.96
44 45 8.621286 AGCTTACTTTAATATAACCACATGCAC 58.379 33.333 0.00 0.00 0.00 4.57
45 46 8.402472 GCTTACTTTAATATAACCACATGCACA 58.598 33.333 0.00 0.00 0.00 4.57
59 65 4.979564 CATGCACATGTAGAATCGTAGG 57.020 45.455 0.00 0.00 34.23 3.18
60 66 4.371786 CATGCACATGTAGAATCGTAGGT 58.628 43.478 0.00 0.00 34.23 3.08
61 67 5.528870 CATGCACATGTAGAATCGTAGGTA 58.471 41.667 0.00 0.00 34.23 3.08
62 68 5.585820 TGCACATGTAGAATCGTAGGTAA 57.414 39.130 0.00 0.00 0.00 2.85
63 69 6.156748 TGCACATGTAGAATCGTAGGTAAT 57.843 37.500 0.00 0.00 0.00 1.89
64 70 7.279750 TGCACATGTAGAATCGTAGGTAATA 57.720 36.000 0.00 0.00 0.00 0.98
65 71 7.368059 TGCACATGTAGAATCGTAGGTAATAG 58.632 38.462 0.00 0.00 0.00 1.73
115 121 9.745018 CAGAATTAATGGATCATATTAGTGGGT 57.255 33.333 0.00 0.00 0.00 4.51
125 131 6.367374 TCATATTAGTGGGTGTGTCTCAAA 57.633 37.500 0.00 0.00 0.00 2.69
167 173 7.070322 AGGTTATAGTTAAGGGCTACGATCAAA 59.930 37.037 0.00 0.00 0.00 2.69
194 200 5.640732 AGCGTTTCAATAATGATGTGTTCC 58.359 37.500 0.00 0.00 34.96 3.62
209 217 6.483307 TGATGTGTTCCATATTTAGCTACTGC 59.517 38.462 0.00 0.00 34.75 4.40
213 221 6.477688 GTGTTCCATATTTAGCTACTGCGTAA 59.522 38.462 0.00 0.00 45.42 3.18
215 223 7.384115 TGTTCCATATTTAGCTACTGCGTAATC 59.616 37.037 0.00 0.00 45.42 1.75
216 224 6.988522 TCCATATTTAGCTACTGCGTAATCA 58.011 36.000 0.00 0.00 45.42 2.57
220 228 6.771188 ATTTAGCTACTGCGTAATCATGAC 57.229 37.500 0.00 0.00 45.42 3.06
221 229 2.732366 AGCTACTGCGTAATCATGACG 58.268 47.619 0.00 0.00 45.42 4.35
222 230 2.357952 AGCTACTGCGTAATCATGACGA 59.642 45.455 9.39 0.00 42.98 4.20
223 231 3.004839 AGCTACTGCGTAATCATGACGAT 59.995 43.478 9.39 0.00 42.98 3.73
224 232 3.120286 GCTACTGCGTAATCATGACGATG 59.880 47.826 9.39 2.04 42.98 3.84
225 233 3.165058 ACTGCGTAATCATGACGATGT 57.835 42.857 9.39 4.32 42.98 3.06
226 234 2.860136 ACTGCGTAATCATGACGATGTG 59.140 45.455 9.39 1.98 42.98 3.21
228 236 2.857748 TGCGTAATCATGACGATGTGAC 59.142 45.455 9.39 0.00 42.98 3.67
229 237 3.116300 GCGTAATCATGACGATGTGACT 58.884 45.455 9.39 0.00 42.98 3.41
230 238 3.060940 GCGTAATCATGACGATGTGACTG 60.061 47.826 9.39 0.00 42.98 3.51
232 240 4.562789 CGTAATCATGACGATGTGACTGTT 59.437 41.667 0.00 0.00 42.98 3.16
233 241 4.934075 AATCATGACGATGTGACTGTTG 57.066 40.909 0.00 0.00 33.40 3.33
234 242 3.385193 TCATGACGATGTGACTGTTGT 57.615 42.857 0.00 0.00 0.00 3.32
279 287 4.735662 TTAAATTTTGGGTCGTCACTCG 57.264 40.909 0.00 0.00 41.41 4.18
284 292 1.105167 TTGGGTCGTCACTCGTCAGT 61.105 55.000 0.00 0.00 40.80 3.41
285 293 0.250424 TGGGTCGTCACTCGTCAGTA 60.250 55.000 0.00 0.00 40.80 2.74
297 305 7.235777 GTCACTCGTCAGTAAGAAGTAACTAG 58.764 42.308 0.00 0.00 0.00 2.57
298 306 6.370994 TCACTCGTCAGTAAGAAGTAACTAGG 59.629 42.308 0.00 0.00 0.00 3.02
299 307 5.123661 ACTCGTCAGTAAGAAGTAACTAGGC 59.876 44.000 0.00 0.00 0.00 3.93
300 308 4.397417 TCGTCAGTAAGAAGTAACTAGGCC 59.603 45.833 0.00 0.00 0.00 5.19
301 309 4.157289 CGTCAGTAAGAAGTAACTAGGCCA 59.843 45.833 5.01 0.00 0.00 5.36
303 311 4.710375 TCAGTAAGAAGTAACTAGGCCAGG 59.290 45.833 5.01 0.00 0.00 4.45
315 327 1.303643 GGCCAGGCTGCAAACTAGT 60.304 57.895 12.43 0.00 0.00 2.57
316 328 1.589716 GGCCAGGCTGCAAACTAGTG 61.590 60.000 12.43 0.00 0.00 2.74
319 331 1.003118 CCAGGCTGCAAACTAGTGGTA 59.997 52.381 9.56 0.00 0.00 3.25
320 332 2.350522 CAGGCTGCAAACTAGTGGTAG 58.649 52.381 0.00 2.23 0.00 3.18
323 335 4.030913 AGGCTGCAAACTAGTGGTAGATA 58.969 43.478 14.43 0.00 0.00 1.98
424 436 4.090588 CAAGCCCGGCGGTAAGGA 62.091 66.667 26.32 0.00 0.00 3.36
425 437 4.091939 AAGCCCGGCGGTAAGGAC 62.092 66.667 26.32 6.69 0.00 3.85
428 440 4.203076 CCCGGCGGTAAGGACGAG 62.203 72.222 26.32 1.35 42.31 4.18
429 441 4.867599 CCGGCGGTAAGGACGAGC 62.868 72.222 19.97 0.00 42.31 5.03
431 443 3.818787 GGCGGTAAGGACGAGCGA 61.819 66.667 0.00 0.00 40.13 4.93
432 444 2.412112 GCGGTAAGGACGAGCGAT 59.588 61.111 0.00 0.00 40.13 4.58
433 445 1.944676 GCGGTAAGGACGAGCGATG 60.945 63.158 0.00 0.00 40.13 3.84
434 446 1.725665 CGGTAAGGACGAGCGATGA 59.274 57.895 0.00 0.00 40.13 2.92
435 447 0.311165 CGGTAAGGACGAGCGATGAT 59.689 55.000 0.00 0.00 40.13 2.45
436 448 1.772182 GGTAAGGACGAGCGATGATG 58.228 55.000 0.00 0.00 0.00 3.07
437 449 1.132588 GTAAGGACGAGCGATGATGC 58.867 55.000 0.00 0.00 0.00 3.91
438 450 0.032130 TAAGGACGAGCGATGATGCC 59.968 55.000 0.00 0.00 34.65 4.40
439 451 2.960957 AAGGACGAGCGATGATGCCG 62.961 60.000 0.00 0.00 35.56 5.69
459 471 3.073735 CTCGCACCTGAGAGCCCT 61.074 66.667 0.00 0.00 38.28 5.19
460 472 3.368190 CTCGCACCTGAGAGCCCTG 62.368 68.421 0.00 0.00 38.28 4.45
463 475 4.463879 CACCTGAGAGCCCTGCGG 62.464 72.222 0.00 0.00 0.00 5.69
484 496 4.397832 GGGCGAAGGGCACGGTAA 62.398 66.667 0.00 0.00 46.16 2.85
485 497 2.818274 GGCGAAGGGCACGGTAAG 60.818 66.667 0.00 0.00 46.16 2.34
486 498 2.818274 GCGAAGGGCACGGTAAGG 60.818 66.667 0.00 0.00 42.87 2.69
487 499 2.818274 CGAAGGGCACGGTAAGGC 60.818 66.667 0.00 0.00 0.00 4.35
497 509 2.125793 GGTAAGGCCGTCGGACAC 60.126 66.667 21.82 9.73 29.21 3.67
505 517 4.429212 CGTCGGACACGCCCATGA 62.429 66.667 9.10 0.00 42.87 3.07
506 518 2.186903 GTCGGACACGCCCATGAT 59.813 61.111 2.62 0.00 40.69 2.45
507 519 2.173669 GTCGGACACGCCCATGATG 61.174 63.158 2.62 0.00 40.69 3.07
508 520 2.186644 CGGACACGCCCATGATGA 59.813 61.111 0.00 0.00 0.00 2.92
509 521 2.173669 CGGACACGCCCATGATGAC 61.174 63.158 0.00 0.00 0.00 3.06
510 522 1.078497 GGACACGCCCATGATGACA 60.078 57.895 0.00 0.00 0.00 3.58
511 523 0.464373 GGACACGCCCATGATGACAT 60.464 55.000 0.00 0.00 37.19 3.06
512 524 0.940126 GACACGCCCATGATGACATC 59.060 55.000 8.59 8.59 34.15 3.06
513 525 0.811219 ACACGCCCATGATGACATCG 60.811 55.000 10.79 0.97 34.15 3.84
514 526 1.889105 ACGCCCATGATGACATCGC 60.889 57.895 10.79 6.92 34.15 4.58
515 527 2.941333 GCCCATGATGACATCGCG 59.059 61.111 10.79 0.00 34.15 5.87
516 528 2.941333 CCCATGATGACATCGCGC 59.059 61.111 10.79 0.00 34.15 6.86
517 529 1.888638 CCCATGATGACATCGCGCA 60.889 57.895 8.75 0.00 34.15 6.09
518 530 1.277739 CCATGATGACATCGCGCAC 59.722 57.895 8.75 0.00 34.15 5.34
519 531 1.277739 CATGATGACATCGCGCACC 59.722 57.895 8.75 0.00 34.15 5.01
520 532 1.153389 ATGATGACATCGCGCACCA 60.153 52.632 8.75 0.00 29.98 4.17
521 533 1.431488 ATGATGACATCGCGCACCAC 61.431 55.000 8.75 0.00 29.98 4.16
522 534 2.813179 GATGACATCGCGCACCACC 61.813 63.158 8.75 0.00 0.00 4.61
523 535 3.315142 ATGACATCGCGCACCACCT 62.315 57.895 8.75 0.00 0.00 4.00
524 536 3.188786 GACATCGCGCACCACCTC 61.189 66.667 8.75 0.00 0.00 3.85
525 537 4.760047 ACATCGCGCACCACCTCC 62.760 66.667 8.75 0.00 0.00 4.30
539 551 4.760047 CTCCCCGGCCGTGAAGTG 62.760 72.222 26.12 7.18 0.00 3.16
541 553 4.096003 CCCCGGCCGTGAAGTGAT 62.096 66.667 26.12 0.00 0.00 3.06
542 554 2.819595 CCCGGCCGTGAAGTGATG 60.820 66.667 26.12 4.67 0.00 3.07
543 555 3.499737 CCGGCCGTGAAGTGATGC 61.500 66.667 26.12 0.00 0.00 3.91
544 556 2.434884 CGGCCGTGAAGTGATGCT 60.435 61.111 19.50 0.00 0.00 3.79
545 557 2.456119 CGGCCGTGAAGTGATGCTC 61.456 63.158 19.50 0.00 0.00 4.26
546 558 2.109126 GGCCGTGAAGTGATGCTCC 61.109 63.158 0.00 0.00 0.00 4.70
547 559 1.078848 GCCGTGAAGTGATGCTCCT 60.079 57.895 0.00 0.00 0.00 3.69
548 560 0.674895 GCCGTGAAGTGATGCTCCTT 60.675 55.000 0.00 0.00 0.00 3.36
549 561 1.081892 CCGTGAAGTGATGCTCCTTG 58.918 55.000 0.00 0.00 0.00 3.61
550 562 1.609061 CCGTGAAGTGATGCTCCTTGT 60.609 52.381 0.00 0.00 0.00 3.16
551 563 1.462283 CGTGAAGTGATGCTCCTTGTG 59.538 52.381 0.00 0.00 0.00 3.33
552 564 1.808945 GTGAAGTGATGCTCCTTGTGG 59.191 52.381 0.00 0.00 0.00 4.17
553 565 0.807496 GAAGTGATGCTCCTTGTGGC 59.193 55.000 0.00 0.00 0.00 5.01
554 566 0.403271 AAGTGATGCTCCTTGTGGCT 59.597 50.000 0.00 0.00 0.00 4.75
555 567 0.322277 AGTGATGCTCCTTGTGGCTG 60.322 55.000 0.00 0.00 0.00 4.85
556 568 1.676635 TGATGCTCCTTGTGGCTGC 60.677 57.895 0.00 0.00 34.69 5.25
557 569 1.378250 GATGCTCCTTGTGGCTGCT 60.378 57.895 0.00 0.00 34.99 4.24
558 570 1.654954 GATGCTCCTTGTGGCTGCTG 61.655 60.000 0.00 0.00 34.99 4.41
559 571 2.033141 GCTCCTTGTGGCTGCTGA 59.967 61.111 0.00 0.00 32.60 4.26
560 572 1.378250 GCTCCTTGTGGCTGCTGAT 60.378 57.895 0.00 0.00 32.60 2.90
561 573 1.375098 GCTCCTTGTGGCTGCTGATC 61.375 60.000 0.00 0.00 32.60 2.92
562 574 0.035725 CTCCTTGTGGCTGCTGATCA 60.036 55.000 0.00 0.00 0.00 2.92
563 575 0.035725 TCCTTGTGGCTGCTGATCAG 60.036 55.000 18.84 18.84 45.62 2.90
576 588 2.903798 CTGATCAGCTCCTTCTCCAAC 58.096 52.381 10.38 0.00 0.00 3.77
577 589 2.235650 CTGATCAGCTCCTTCTCCAACA 59.764 50.000 10.38 0.00 0.00 3.33
578 590 2.842496 TGATCAGCTCCTTCTCCAACAT 59.158 45.455 0.00 0.00 0.00 2.71
579 591 3.118482 TGATCAGCTCCTTCTCCAACATC 60.118 47.826 0.00 0.00 0.00 3.06
580 592 1.205655 TCAGCTCCTTCTCCAACATCG 59.794 52.381 0.00 0.00 0.00 3.84
581 593 0.539051 AGCTCCTTCTCCAACATCGG 59.461 55.000 0.00 0.00 0.00 4.18
582 594 1.092345 GCTCCTTCTCCAACATCGGC 61.092 60.000 0.00 0.00 0.00 5.54
583 595 0.539051 CTCCTTCTCCAACATCGGCT 59.461 55.000 0.00 0.00 0.00 5.52
584 596 0.250234 TCCTTCTCCAACATCGGCTG 59.750 55.000 0.00 0.00 0.00 4.85
585 597 1.372087 CCTTCTCCAACATCGGCTGC 61.372 60.000 0.00 0.00 0.00 5.25
586 598 0.392193 CTTCTCCAACATCGGCTGCT 60.392 55.000 0.00 0.00 0.00 4.24
587 599 0.391661 TTCTCCAACATCGGCTGCTC 60.392 55.000 0.00 0.00 0.00 4.26
588 600 1.817099 CTCCAACATCGGCTGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
589 601 2.825836 CCAACATCGGCTGCTCCC 60.826 66.667 0.00 0.00 0.00 4.30
615 627 3.499737 CTGGCGCCGTCCATTGTC 61.500 66.667 23.90 0.00 35.22 3.18
616 628 3.958147 CTGGCGCCGTCCATTGTCT 62.958 63.158 23.90 0.00 35.22 3.41
617 629 2.746277 GGCGCCGTCCATTGTCTT 60.746 61.111 12.58 0.00 0.00 3.01
618 630 2.480555 GCGCCGTCCATTGTCTTG 59.519 61.111 0.00 0.00 0.00 3.02
619 631 2.032634 GCGCCGTCCATTGTCTTGA 61.033 57.895 0.00 0.00 0.00 3.02
620 632 1.369091 GCGCCGTCCATTGTCTTGAT 61.369 55.000 0.00 0.00 0.00 2.57
621 633 0.652592 CGCCGTCCATTGTCTTGATC 59.347 55.000 0.00 0.00 0.00 2.92
622 634 0.652592 GCCGTCCATTGTCTTGATCG 59.347 55.000 0.00 0.00 0.00 3.69
623 635 0.652592 CCGTCCATTGTCTTGATCGC 59.347 55.000 0.00 0.00 0.00 4.58
624 636 1.645034 CGTCCATTGTCTTGATCGCT 58.355 50.000 0.00 0.00 0.00 4.93
625 637 1.325640 CGTCCATTGTCTTGATCGCTG 59.674 52.381 0.00 0.00 0.00 5.18
626 638 2.621338 GTCCATTGTCTTGATCGCTGA 58.379 47.619 0.00 0.00 0.00 4.26
627 639 3.002791 GTCCATTGTCTTGATCGCTGAA 58.997 45.455 0.00 0.00 0.00 3.02
628 640 3.624861 GTCCATTGTCTTGATCGCTGAAT 59.375 43.478 0.00 0.00 0.00 2.57
629 641 3.624410 TCCATTGTCTTGATCGCTGAATG 59.376 43.478 0.00 0.00 0.00 2.67
630 642 3.376234 CCATTGTCTTGATCGCTGAATGT 59.624 43.478 0.00 0.00 0.00 2.71
631 643 4.571984 CCATTGTCTTGATCGCTGAATGTA 59.428 41.667 0.00 0.00 0.00 2.29
632 644 5.277202 CCATTGTCTTGATCGCTGAATGTAG 60.277 44.000 0.00 0.00 0.00 2.74
633 645 4.456280 TGTCTTGATCGCTGAATGTAGT 57.544 40.909 0.00 0.00 0.00 2.73
634 646 5.576447 TGTCTTGATCGCTGAATGTAGTA 57.424 39.130 0.00 0.00 0.00 1.82
635 647 5.961272 TGTCTTGATCGCTGAATGTAGTAA 58.039 37.500 0.00 0.00 0.00 2.24
636 648 6.394809 TGTCTTGATCGCTGAATGTAGTAAA 58.605 36.000 0.00 0.00 0.00 2.01
637 649 6.871492 TGTCTTGATCGCTGAATGTAGTAAAA 59.129 34.615 0.00 0.00 0.00 1.52
638 650 7.063426 TGTCTTGATCGCTGAATGTAGTAAAAG 59.937 37.037 0.00 0.00 0.00 2.27
639 651 6.535150 TCTTGATCGCTGAATGTAGTAAAAGG 59.465 38.462 0.00 0.00 0.00 3.11
640 652 5.116180 TGATCGCTGAATGTAGTAAAAGGG 58.884 41.667 0.00 0.00 0.00 3.95
641 653 4.546829 TCGCTGAATGTAGTAAAAGGGT 57.453 40.909 0.00 0.00 0.00 4.34
642 654 4.901868 TCGCTGAATGTAGTAAAAGGGTT 58.098 39.130 0.00 0.00 0.00 4.11
643 655 4.693566 TCGCTGAATGTAGTAAAAGGGTTG 59.306 41.667 0.00 0.00 0.00 3.77
644 656 4.142687 CGCTGAATGTAGTAAAAGGGTTGG 60.143 45.833 0.00 0.00 0.00 3.77
645 657 4.380550 GCTGAATGTAGTAAAAGGGTTGGC 60.381 45.833 0.00 0.00 0.00 4.52
646 658 4.993028 TGAATGTAGTAAAAGGGTTGGCT 58.007 39.130 0.00 0.00 0.00 4.75
647 659 6.129414 TGAATGTAGTAAAAGGGTTGGCTA 57.871 37.500 0.00 0.00 0.00 3.93
648 660 6.177610 TGAATGTAGTAAAAGGGTTGGCTAG 58.822 40.000 0.00 0.00 0.00 3.42
649 661 3.946606 TGTAGTAAAAGGGTTGGCTAGC 58.053 45.455 6.04 6.04 0.00 3.42
650 662 3.585732 TGTAGTAAAAGGGTTGGCTAGCT 59.414 43.478 15.72 0.00 0.00 3.32
651 663 3.351794 AGTAAAAGGGTTGGCTAGCTC 57.648 47.619 15.72 5.44 0.00 4.09
652 664 2.913617 AGTAAAAGGGTTGGCTAGCTCT 59.086 45.455 15.72 2.25 0.00 4.09
653 665 4.101856 AGTAAAAGGGTTGGCTAGCTCTA 58.898 43.478 15.72 0.00 0.00 2.43
654 666 4.722279 AGTAAAAGGGTTGGCTAGCTCTAT 59.278 41.667 15.72 0.00 0.00 1.98
655 667 3.567478 AAAGGGTTGGCTAGCTCTATG 57.433 47.619 15.72 0.00 0.00 2.23
656 668 0.761802 AGGGTTGGCTAGCTCTATGC 59.238 55.000 15.72 0.00 43.29 3.14
666 678 3.875838 GCTCTATGCGGACGATCTT 57.124 52.632 0.00 0.00 0.00 2.40
667 679 1.692296 GCTCTATGCGGACGATCTTC 58.308 55.000 0.00 0.00 0.00 2.87
668 680 1.957089 CTCTATGCGGACGATCTTCG 58.043 55.000 0.00 0.00 46.93 3.79
677 689 4.110493 CGATCTTCGTTCCAGGGC 57.890 61.111 0.00 0.00 34.72 5.19
678 690 1.517832 CGATCTTCGTTCCAGGGCT 59.482 57.895 0.00 0.00 34.72 5.19
679 691 0.108138 CGATCTTCGTTCCAGGGCTT 60.108 55.000 0.00 0.00 34.72 4.35
680 692 1.657822 GATCTTCGTTCCAGGGCTTC 58.342 55.000 0.00 0.00 0.00 3.86
681 693 1.208293 GATCTTCGTTCCAGGGCTTCT 59.792 52.381 0.00 0.00 0.00 2.85
682 694 0.321671 TCTTCGTTCCAGGGCTTCTG 59.678 55.000 0.00 1.48 43.00 3.02
692 704 3.085952 CAGGGCTTCTGGTTTATTGGA 57.914 47.619 0.64 0.00 39.76 3.53
693 705 2.755103 CAGGGCTTCTGGTTTATTGGAC 59.245 50.000 0.64 0.00 39.76 4.02
694 706 2.649816 AGGGCTTCTGGTTTATTGGACT 59.350 45.455 0.00 0.00 0.00 3.85
695 707 2.755103 GGGCTTCTGGTTTATTGGACTG 59.245 50.000 0.00 0.00 0.00 3.51
696 708 3.421844 GGCTTCTGGTTTATTGGACTGT 58.578 45.455 0.00 0.00 0.00 3.55
697 709 3.440522 GGCTTCTGGTTTATTGGACTGTC 59.559 47.826 0.00 0.00 0.00 3.51
698 710 3.440522 GCTTCTGGTTTATTGGACTGTCC 59.559 47.826 19.96 19.96 36.96 4.02
699 711 4.807643 GCTTCTGGTTTATTGGACTGTCCT 60.808 45.833 26.03 10.82 37.46 3.85
700 712 4.286297 TCTGGTTTATTGGACTGTCCTG 57.714 45.455 26.03 3.74 37.46 3.86
701 713 3.907474 TCTGGTTTATTGGACTGTCCTGA 59.093 43.478 26.03 15.66 37.46 3.86
702 714 4.003648 CTGGTTTATTGGACTGTCCTGAC 58.996 47.826 26.03 16.07 37.46 3.51
703 715 3.000727 GGTTTATTGGACTGTCCTGACG 58.999 50.000 26.03 0.00 37.46 4.35
704 716 3.000727 GTTTATTGGACTGTCCTGACGG 58.999 50.000 26.03 4.58 43.20 4.79
705 717 1.191535 TATTGGACTGTCCTGACGGG 58.808 55.000 26.03 0.00 41.89 5.28
706 718 2.185310 ATTGGACTGTCCTGACGGGC 62.185 60.000 26.03 7.23 45.04 6.13
707 719 4.436998 GGACTGTCCTGACGGGCG 62.437 72.222 19.53 0.00 46.74 6.13
708 720 3.681835 GACTGTCCTGACGGGCGT 61.682 66.667 10.67 0.00 41.89 5.68
709 721 3.916392 GACTGTCCTGACGGGCGTG 62.916 68.421 10.67 0.00 41.89 5.34
710 722 3.991051 CTGTCCTGACGGGCGTGT 61.991 66.667 0.00 0.00 37.90 4.49
711 723 4.293648 TGTCCTGACGGGCGTGTG 62.294 66.667 0.00 0.00 37.90 3.82
715 727 4.363990 CTGACGGGCGTGTGCTCT 62.364 66.667 0.00 0.00 40.44 4.09
716 728 2.986979 TGACGGGCGTGTGCTCTA 60.987 61.111 0.00 0.00 40.44 2.43
717 729 2.506438 GACGGGCGTGTGCTCTAC 60.506 66.667 0.00 0.00 40.44 2.59
718 730 3.277211 GACGGGCGTGTGCTCTACA 62.277 63.158 0.00 0.00 40.44 2.74
726 738 2.434359 GTGCTCTACACGGCCACC 60.434 66.667 2.24 0.00 40.07 4.61
727 739 2.603473 TGCTCTACACGGCCACCT 60.603 61.111 2.24 0.00 0.00 4.00
728 740 2.125512 GCTCTACACGGCCACCTG 60.126 66.667 2.24 0.00 0.00 4.00
729 741 2.646175 GCTCTACACGGCCACCTGA 61.646 63.158 2.24 0.00 0.00 3.86
730 742 1.972198 CTCTACACGGCCACCTGAA 59.028 57.895 2.24 0.00 0.00 3.02
731 743 0.389948 CTCTACACGGCCACCTGAAC 60.390 60.000 2.24 0.00 0.00 3.18
732 744 1.375523 CTACACGGCCACCTGAACC 60.376 63.158 2.24 0.00 0.00 3.62
733 745 2.107041 CTACACGGCCACCTGAACCA 62.107 60.000 2.24 0.00 0.00 3.67
912 926 1.374190 CTGCTGTGGAGCTGGACTT 59.626 57.895 0.00 0.00 46.39 3.01
983 997 4.380023 GCAAAGATCACGTGACTAGTCTCT 60.380 45.833 22.71 15.65 0.00 3.10
1195 1216 6.115446 CAGAGGTAATTCAGATGCCACTTAA 58.885 40.000 0.00 0.00 0.00 1.85
1226 1247 5.945155 ACTAGTTTTTGTCTCACGCAAAAA 58.055 33.333 10.62 10.62 46.79 1.94
1323 1364 4.151582 GGCATGCGGGCAATGCTT 62.152 61.111 12.44 0.00 42.77 3.91
1470 3130 1.529152 TTGTTCGGAGGCTACGAGCA 61.529 55.000 31.10 31.10 46.93 4.26
1632 3293 9.031537 TGTCTGACTGATTACATTAGGTTTCTA 57.968 33.333 9.51 0.00 0.00 2.10
1703 3364 6.455360 TCTTTGAAATTGCATATCCTGTCC 57.545 37.500 0.00 0.00 0.00 4.02
1704 3365 6.189859 TCTTTGAAATTGCATATCCTGTCCT 58.810 36.000 0.00 0.00 0.00 3.85
1705 3366 5.840243 TTGAAATTGCATATCCTGTCCTG 57.160 39.130 0.00 0.00 0.00 3.86
1706 3367 4.858850 TGAAATTGCATATCCTGTCCTGT 58.141 39.130 0.00 0.00 0.00 4.00
1742 3403 5.532664 AACTAAAAAGTCGAGAGGTGTCT 57.467 39.130 0.00 0.00 34.86 3.41
1749 3410 0.250945 TCGAGAGGTGTCTGAGTGCT 60.251 55.000 0.00 0.00 30.97 4.40
1892 3667 3.129988 GTGCATTGAGGAAGAGGAATTGG 59.870 47.826 0.00 0.00 0.00 3.16
2235 4014 7.432350 TTGTTTTTCTTTTTGTGCATCACTT 57.568 28.000 0.00 0.00 35.11 3.16
2341 4133 1.070786 AAGATCAACACGGTGCGGT 59.929 52.632 8.30 0.00 0.00 5.68
2506 5057 3.728385 AAGGATCTTGTTAGGCAGCTT 57.272 42.857 0.00 0.00 0.00 3.74
2599 5153 4.023878 GTGCCATTTACAAAACGGTCACTA 60.024 41.667 0.00 0.00 0.00 2.74
2663 5217 0.312416 TGCCCGAAAAACAATGGACG 59.688 50.000 0.00 0.00 0.00 4.79
2680 5234 2.602878 GACGTACTTGCGGAGATGAAA 58.397 47.619 0.00 0.00 35.98 2.69
2737 5291 4.313277 TGATGACGAGAGCAGGATTAAG 57.687 45.455 0.00 0.00 0.00 1.85
2959 5514 2.874701 CCGTGAATTCATCAGGATGGTC 59.125 50.000 12.12 5.75 44.81 4.02
2975 5530 1.756665 GTCGGGGGTAAACACCTGT 59.243 57.895 10.02 0.00 46.08 4.00
2983 5538 5.323581 GGGGGTAAACACCTGTAAACAATA 58.676 41.667 0.57 0.00 40.05 1.90
3003 5558 8.413309 ACAATATTAACAGGTACGGCTAGATA 57.587 34.615 0.00 0.00 0.00 1.98
3022 5577 6.019779 AGATAAGGCGTAGATGTGAATCTC 57.980 41.667 0.00 0.00 32.36 2.75
3033 5588 8.877779 CGTAGATGTGAATCTCTCATTTTTCTT 58.122 33.333 0.00 0.00 36.14 2.52
3070 5643 6.252599 TCATGTTGTAAGCTCCTAATGGAT 57.747 37.500 0.00 0.00 42.29 3.41
3093 5666 8.736244 GGATCTAATTTACTTAACTGGTTGCAA 58.264 33.333 0.00 0.00 0.00 4.08
3094 5667 9.556030 GATCTAATTTACTTAACTGGTTGCAAC 57.444 33.333 21.59 21.59 0.00 4.17
3266 5839 2.002586 GTTCATCACATGGTCACGGAG 58.997 52.381 0.00 0.00 0.00 4.63
3301 5874 1.064240 TGGATGGTCTGCAATGCTCAT 60.064 47.619 6.82 5.31 0.00 2.90
3338 5911 1.964608 CTCTTGCTGATCCCTCCGCA 61.965 60.000 0.00 0.00 39.49 5.69
3381 5954 4.509970 CGACAAACACCATGAACTACAGAA 59.490 41.667 0.00 0.00 0.00 3.02
3383 5956 4.578928 ACAAACACCATGAACTACAGAACC 59.421 41.667 0.00 0.00 0.00 3.62
3384 5957 4.706842 AACACCATGAACTACAGAACCT 57.293 40.909 0.00 0.00 0.00 3.50
3388 5961 6.173339 ACACCATGAACTACAGAACCTAATG 58.827 40.000 0.00 0.00 0.00 1.90
3462 6036 3.125316 CGTGAGGCTGTTCATACCTTTTC 59.875 47.826 0.00 0.00 32.67 2.29
3463 6037 3.440522 GTGAGGCTGTTCATACCTTTTCC 59.559 47.826 0.00 0.00 32.67 3.13
3528 6102 1.026718 AATGCTGACCGCTAACTGGC 61.027 55.000 0.00 0.00 40.11 4.85
3542 6116 2.046988 TGGCGGATGTGTGAGCTG 60.047 61.111 0.00 0.00 0.00 4.24
3544 6118 2.435586 GCGGATGTGTGAGCTGCT 60.436 61.111 0.00 0.00 39.44 4.24
3545 6119 1.153568 GCGGATGTGTGAGCTGCTA 60.154 57.895 0.15 0.00 39.44 3.49
3592 6166 2.979240 AGATCGCCTTCTTGTTCTTCC 58.021 47.619 0.00 0.00 0.00 3.46
3605 6179 1.700186 GTTCTTCCTGGGACTCTGGTT 59.300 52.381 0.00 0.00 36.08 3.67
3624 6198 2.856988 GTGGGTGGGTGGGGAGAA 60.857 66.667 0.00 0.00 0.00 2.87
3633 6207 1.616994 GGGTGGGGAGAAGGATTGTTG 60.617 57.143 0.00 0.00 0.00 3.33
3645 6219 7.013823 AGAAGGATTGTTGAAGAAGATGAGA 57.986 36.000 0.00 0.00 0.00 3.27
3703 6277 2.288961 GCACTGGGATTGCTTTGATG 57.711 50.000 0.00 0.00 37.00 3.07
3711 6285 1.266867 ATTGCTTTGATGGGGGTGGC 61.267 55.000 0.00 0.00 0.00 5.01
3888 6462 3.074412 GGCAGAACCGTATGGATAATGG 58.926 50.000 8.33 0.00 39.21 3.16
3893 6467 6.073222 GCAGAACCGTATGGATAATGGTTAAG 60.073 42.308 8.33 0.00 42.69 1.85
3899 6473 4.974645 ATGGATAATGGTTAAGAGCGGA 57.025 40.909 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.371786 ACCTACGATTCTACATGTGCATG 58.628 43.478 9.11 10.31 44.15 4.06
39 40 4.672587 ACCTACGATTCTACATGTGCAT 57.327 40.909 9.11 0.00 0.00 3.96
40 41 5.585820 TTACCTACGATTCTACATGTGCA 57.414 39.130 9.11 0.00 0.00 4.57
41 42 7.368833 ACTATTACCTACGATTCTACATGTGC 58.631 38.462 9.11 0.00 0.00 4.57
64 70 9.283768 TGTGTGATCTAACAATTCAAACATACT 57.716 29.630 0.00 0.00 33.71 2.12
65 71 9.546909 CTGTGTGATCTAACAATTCAAACATAC 57.453 33.333 0.00 0.00 37.08 2.39
69 75 9.683069 AATTCTGTGTGATCTAACAATTCAAAC 57.317 29.630 0.00 0.00 0.00 2.93
77 83 9.330063 GATCCATTAATTCTGTGTGATCTAACA 57.670 33.333 0.00 0.00 0.00 2.41
78 84 9.330063 TGATCCATTAATTCTGTGTGATCTAAC 57.670 33.333 0.00 0.00 0.00 2.34
107 113 6.126409 AGAAATTTTGAGACACACCCACTAA 58.874 36.000 0.00 0.00 0.00 2.24
140 146 7.233632 TGATCGTAGCCCTTAACTATAACCTA 58.766 38.462 0.00 0.00 0.00 3.08
142 148 6.336842 TGATCGTAGCCCTTAACTATAACC 57.663 41.667 0.00 0.00 0.00 2.85
143 149 7.924947 AGTTTGATCGTAGCCCTTAACTATAAC 59.075 37.037 0.00 0.00 0.00 1.89
148 154 4.820894 AGTTTGATCGTAGCCCTTAACT 57.179 40.909 0.00 0.00 0.00 2.24
155 161 2.537401 ACGCTTAGTTTGATCGTAGCC 58.463 47.619 0.00 0.00 0.00 3.93
167 173 7.377766 ACACATCATTATTGAAACGCTTAGT 57.622 32.000 0.00 0.00 34.96 2.24
194 200 8.376203 GTCATGATTACGCAGTAGCTAAATATG 58.624 37.037 0.00 0.00 46.93 1.78
200 208 3.562557 TCGTCATGATTACGCAGTAGCTA 59.437 43.478 0.00 0.00 46.93 3.32
209 217 4.105486 ACAGTCACATCGTCATGATTACG 58.895 43.478 0.00 0.00 41.64 3.18
213 221 3.930336 ACAACAGTCACATCGTCATGAT 58.070 40.909 0.00 0.00 38.01 2.45
215 223 4.472691 AAACAACAGTCACATCGTCATG 57.527 40.909 0.00 0.00 35.92 3.07
216 224 5.499139 AAAAACAACAGTCACATCGTCAT 57.501 34.783 0.00 0.00 0.00 3.06
249 257 8.754080 TGACGACCCAAAATTTAAATATCCAAT 58.246 29.630 0.01 0.00 0.00 3.16
250 258 8.030106 GTGACGACCCAAAATTTAAATATCCAA 58.970 33.333 0.01 0.00 0.00 3.53
251 259 7.394923 AGTGACGACCCAAAATTTAAATATCCA 59.605 33.333 0.01 0.00 0.00 3.41
253 261 7.638683 CGAGTGACGACCCAAAATTTAAATATC 59.361 37.037 0.01 0.00 45.77 1.63
254 262 7.120138 ACGAGTGACGACCCAAAATTTAAATAT 59.880 33.333 0.01 0.00 45.77 1.28
255 263 6.427547 ACGAGTGACGACCCAAAATTTAAATA 59.572 34.615 0.01 0.00 45.77 1.40
256 264 5.239963 ACGAGTGACGACCCAAAATTTAAAT 59.760 36.000 0.00 0.00 45.77 1.40
257 265 4.575645 ACGAGTGACGACCCAAAATTTAAA 59.424 37.500 0.00 0.00 45.77 1.52
258 266 4.128643 ACGAGTGACGACCCAAAATTTAA 58.871 39.130 0.00 0.00 45.77 1.52
259 267 3.731089 ACGAGTGACGACCCAAAATTTA 58.269 40.909 0.00 0.00 45.77 1.40
262 270 1.069513 TGACGAGTGACGACCCAAAAT 59.930 47.619 0.00 0.00 45.77 1.82
268 276 1.802960 TCTTACTGACGAGTGACGACC 59.197 52.381 0.00 0.00 45.77 4.79
279 287 5.394333 CCTGGCCTAGTTACTTCTTACTGAC 60.394 48.000 3.32 0.00 0.00 3.51
284 292 3.451178 CAGCCTGGCCTAGTTACTTCTTA 59.549 47.826 16.57 0.00 0.00 2.10
285 293 2.237392 CAGCCTGGCCTAGTTACTTCTT 59.763 50.000 16.57 0.00 0.00 2.52
297 305 1.303643 ACTAGTTTGCAGCCTGGCC 60.304 57.895 16.57 0.00 0.00 5.36
298 306 1.589716 CCACTAGTTTGCAGCCTGGC 61.590 60.000 11.65 11.65 0.00 4.85
299 307 0.250901 ACCACTAGTTTGCAGCCTGG 60.251 55.000 0.00 0.00 0.00 4.45
300 308 2.028112 TCTACCACTAGTTTGCAGCCTG 60.028 50.000 0.00 0.00 0.00 4.85
301 309 2.257207 TCTACCACTAGTTTGCAGCCT 58.743 47.619 0.00 0.00 0.00 4.58
303 311 4.752101 CCATATCTACCACTAGTTTGCAGC 59.248 45.833 0.00 0.00 0.00 5.25
334 346 9.435570 ACTGGTTCTCTTATACTACACCATAAT 57.564 33.333 0.00 0.00 32.45 1.28
345 357 6.464039 GGGGGTAATCACTGGTTCTCTTATAC 60.464 46.154 0.00 0.00 0.00 1.47
346 358 5.605488 GGGGGTAATCACTGGTTCTCTTATA 59.395 44.000 0.00 0.00 0.00 0.98
347 359 4.412528 GGGGGTAATCACTGGTTCTCTTAT 59.587 45.833 0.00 0.00 0.00 1.73
348 360 3.778629 GGGGGTAATCACTGGTTCTCTTA 59.221 47.826 0.00 0.00 0.00 2.10
349 361 2.576648 GGGGGTAATCACTGGTTCTCTT 59.423 50.000 0.00 0.00 0.00 2.85
350 362 2.197465 GGGGGTAATCACTGGTTCTCT 58.803 52.381 0.00 0.00 0.00 3.10
351 363 2.711978 GGGGGTAATCACTGGTTCTC 57.288 55.000 0.00 0.00 0.00 2.87
407 419 4.090588 TCCTTACCGCCGGGCTTG 62.091 66.667 18.34 10.61 36.48 4.01
408 420 4.091939 GTCCTTACCGCCGGGCTT 62.092 66.667 18.34 6.34 36.48 4.35
411 423 4.203076 CTCGTCCTTACCGCCGGG 62.203 72.222 8.57 0.00 40.11 5.73
412 424 4.867599 GCTCGTCCTTACCGCCGG 62.868 72.222 0.00 0.00 0.00 6.13
414 426 3.135056 ATCGCTCGTCCTTACCGCC 62.135 63.158 0.00 0.00 0.00 6.13
415 427 1.944676 CATCGCTCGTCCTTACCGC 60.945 63.158 0.00 0.00 0.00 5.68
416 428 0.311165 ATCATCGCTCGTCCTTACCG 59.689 55.000 0.00 0.00 0.00 4.02
417 429 1.772182 CATCATCGCTCGTCCTTACC 58.228 55.000 0.00 0.00 0.00 2.85
418 430 1.132588 GCATCATCGCTCGTCCTTAC 58.867 55.000 0.00 0.00 0.00 2.34
419 431 0.032130 GGCATCATCGCTCGTCCTTA 59.968 55.000 0.00 0.00 0.00 2.69
420 432 1.227380 GGCATCATCGCTCGTCCTT 60.227 57.895 0.00 0.00 0.00 3.36
421 433 2.419198 GGCATCATCGCTCGTCCT 59.581 61.111 0.00 0.00 0.00 3.85
422 434 3.032609 CGGCATCATCGCTCGTCC 61.033 66.667 0.00 0.00 0.00 4.79
442 454 3.073735 AGGGCTCTCAGGTGCGAG 61.074 66.667 0.00 0.00 33.30 5.03
443 455 3.385384 CAGGGCTCTCAGGTGCGA 61.385 66.667 0.00 0.00 33.30 5.10
467 479 4.397832 TTACCGTGCCCTTCGCCC 62.398 66.667 0.00 0.00 36.24 6.13
468 480 2.818274 CTTACCGTGCCCTTCGCC 60.818 66.667 0.00 0.00 36.24 5.54
469 481 2.818274 CCTTACCGTGCCCTTCGC 60.818 66.667 0.00 0.00 38.31 4.70
470 482 2.818274 GCCTTACCGTGCCCTTCG 60.818 66.667 0.00 0.00 0.00 3.79
471 483 2.437895 GGCCTTACCGTGCCCTTC 60.438 66.667 0.00 0.00 41.97 3.46
480 492 2.125793 GTGTCCGACGGCCTTACC 60.126 66.667 9.66 0.00 0.00 2.85
481 493 2.505557 CGTGTCCGACGGCCTTAC 60.506 66.667 9.66 2.35 44.85 2.34
489 501 2.173669 CATCATGGGCGTGTCCGAC 61.174 63.158 0.00 0.00 43.14 4.79
490 502 2.186644 CATCATGGGCGTGTCCGA 59.813 61.111 0.00 0.00 35.63 4.55
491 503 2.173669 GTCATCATGGGCGTGTCCG 61.174 63.158 0.00 0.00 34.94 4.79
492 504 0.464373 ATGTCATCATGGGCGTGTCC 60.464 55.000 0.00 0.00 32.51 4.02
493 505 0.940126 GATGTCATCATGGGCGTGTC 59.060 55.000 8.00 0.00 34.06 3.67
494 506 0.811219 CGATGTCATCATGGGCGTGT 60.811 55.000 13.22 0.00 34.06 4.49
495 507 1.936658 CGATGTCATCATGGGCGTG 59.063 57.895 13.22 0.00 34.06 5.34
496 508 1.889105 GCGATGTCATCATGGGCGT 60.889 57.895 13.22 0.00 34.06 5.68
497 509 2.941333 GCGATGTCATCATGGGCG 59.059 61.111 13.22 0.00 34.06 6.13
498 510 2.941333 CGCGATGTCATCATGGGC 59.059 61.111 13.22 6.95 34.06 5.36
499 511 1.888638 TGCGCGATGTCATCATGGG 60.889 57.895 12.10 6.96 34.06 4.00
500 512 1.277739 GTGCGCGATGTCATCATGG 59.722 57.895 12.10 2.54 34.06 3.66
501 513 1.277739 GGTGCGCGATGTCATCATG 59.722 57.895 12.10 5.42 34.06 3.07
502 514 1.153389 TGGTGCGCGATGTCATCAT 60.153 52.632 12.10 0.00 36.95 2.45
503 515 2.100031 GTGGTGCGCGATGTCATCA 61.100 57.895 12.10 0.63 0.00 3.07
504 516 2.703409 GTGGTGCGCGATGTCATC 59.297 61.111 12.10 2.43 0.00 2.92
505 517 2.819595 GGTGGTGCGCGATGTCAT 60.820 61.111 12.10 0.00 0.00 3.06
506 518 3.932580 GAGGTGGTGCGCGATGTCA 62.933 63.158 12.10 0.00 0.00 3.58
507 519 3.188786 GAGGTGGTGCGCGATGTC 61.189 66.667 12.10 0.00 0.00 3.06
508 520 4.760047 GGAGGTGGTGCGCGATGT 62.760 66.667 12.10 0.00 0.00 3.06
522 534 4.760047 CACTTCACGGCCGGGGAG 62.760 72.222 34.63 34.63 0.00 4.30
524 536 4.096003 ATCACTTCACGGCCGGGG 62.096 66.667 30.43 20.53 0.00 5.73
525 537 2.819595 CATCACTTCACGGCCGGG 60.820 66.667 31.76 28.69 0.00 5.73
526 538 3.499737 GCATCACTTCACGGCCGG 61.500 66.667 31.76 18.67 0.00 6.13
527 539 2.434884 AGCATCACTTCACGGCCG 60.435 61.111 26.86 26.86 0.00 6.13
528 540 2.109126 GGAGCATCACTTCACGGCC 61.109 63.158 0.00 0.00 36.25 6.13
529 541 0.674895 AAGGAGCATCACTTCACGGC 60.675 55.000 0.00 0.00 36.25 5.68
530 542 1.081892 CAAGGAGCATCACTTCACGG 58.918 55.000 0.00 0.00 36.25 4.94
531 543 1.462283 CACAAGGAGCATCACTTCACG 59.538 52.381 0.00 0.00 36.25 4.35
532 544 1.808945 CCACAAGGAGCATCACTTCAC 59.191 52.381 0.00 0.00 36.25 3.18
533 545 1.883638 GCCACAAGGAGCATCACTTCA 60.884 52.381 0.00 0.00 36.25 3.02
534 546 0.807496 GCCACAAGGAGCATCACTTC 59.193 55.000 0.00 0.00 36.25 3.01
535 547 0.403271 AGCCACAAGGAGCATCACTT 59.597 50.000 0.00 0.00 36.25 3.16
536 548 0.322277 CAGCCACAAGGAGCATCACT 60.322 55.000 0.00 0.00 36.25 3.41
537 549 1.930908 GCAGCCACAAGGAGCATCAC 61.931 60.000 0.00 0.00 37.40 3.06
538 550 1.676635 GCAGCCACAAGGAGCATCA 60.677 57.895 0.00 0.00 37.40 3.07
539 551 1.378250 AGCAGCCACAAGGAGCATC 60.378 57.895 0.00 0.00 39.20 3.91
540 552 1.677966 CAGCAGCCACAAGGAGCAT 60.678 57.895 0.00 0.00 39.20 3.79
541 553 2.133359 ATCAGCAGCCACAAGGAGCA 62.133 55.000 0.00 0.00 39.20 4.26
542 554 1.375098 GATCAGCAGCCACAAGGAGC 61.375 60.000 0.00 0.00 37.63 4.70
543 555 0.035725 TGATCAGCAGCCACAAGGAG 60.036 55.000 0.00 0.00 36.89 3.69
544 556 0.035725 CTGATCAGCAGCCACAAGGA 60.036 55.000 10.38 0.00 37.90 3.36
545 557 2.478989 CTGATCAGCAGCCACAAGG 58.521 57.895 10.38 0.00 37.90 3.61
556 568 2.235650 TGTTGGAGAAGGAGCTGATCAG 59.764 50.000 18.84 18.84 0.00 2.90
557 569 2.259917 TGTTGGAGAAGGAGCTGATCA 58.740 47.619 0.00 0.00 0.00 2.92
558 570 3.465871 GATGTTGGAGAAGGAGCTGATC 58.534 50.000 0.00 0.00 0.00 2.92
559 571 2.158986 CGATGTTGGAGAAGGAGCTGAT 60.159 50.000 0.00 0.00 0.00 2.90
560 572 1.205655 CGATGTTGGAGAAGGAGCTGA 59.794 52.381 0.00 0.00 0.00 4.26
561 573 1.649664 CGATGTTGGAGAAGGAGCTG 58.350 55.000 0.00 0.00 0.00 4.24
562 574 0.539051 CCGATGTTGGAGAAGGAGCT 59.461 55.000 0.00 0.00 0.00 4.09
563 575 1.092345 GCCGATGTTGGAGAAGGAGC 61.092 60.000 0.00 0.00 0.00 4.70
564 576 0.539051 AGCCGATGTTGGAGAAGGAG 59.461 55.000 0.00 0.00 0.00 3.69
565 577 0.250234 CAGCCGATGTTGGAGAAGGA 59.750 55.000 0.00 0.00 0.00 3.36
566 578 1.372087 GCAGCCGATGTTGGAGAAGG 61.372 60.000 0.00 0.00 0.00 3.46
567 579 0.392193 AGCAGCCGATGTTGGAGAAG 60.392 55.000 0.00 0.00 0.00 2.85
568 580 0.391661 GAGCAGCCGATGTTGGAGAA 60.392 55.000 0.00 0.00 0.00 2.87
569 581 1.219124 GAGCAGCCGATGTTGGAGA 59.781 57.895 0.00 0.00 0.00 3.71
570 582 1.817099 GGAGCAGCCGATGTTGGAG 60.817 63.158 0.00 0.00 0.00 3.86
571 583 2.268920 GGAGCAGCCGATGTTGGA 59.731 61.111 0.00 0.00 0.00 3.53
572 584 2.825836 GGGAGCAGCCGATGTTGG 60.826 66.667 0.00 0.00 37.63 3.77
573 585 3.197790 CGGGAGCAGCCGATGTTG 61.198 66.667 0.00 0.00 37.63 3.33
574 586 3.665675 GACGGGAGCAGCCGATGTT 62.666 63.158 0.00 0.00 37.63 2.71
575 587 4.148825 GACGGGAGCAGCCGATGT 62.149 66.667 0.00 0.00 37.63 3.06
576 588 4.899239 GGACGGGAGCAGCCGATG 62.899 72.222 0.00 0.00 37.63 3.84
598 610 3.499737 GACAATGGACGGCGCCAG 61.500 66.667 28.98 21.29 42.15 4.85
599 611 3.545124 AAGACAATGGACGGCGCCA 62.545 57.895 28.98 21.73 43.23 5.69
600 612 2.746277 AAGACAATGGACGGCGCC 60.746 61.111 19.07 19.07 0.00 6.53
601 613 1.369091 ATCAAGACAATGGACGGCGC 61.369 55.000 6.90 0.00 0.00 6.53
602 614 0.652592 GATCAAGACAATGGACGGCG 59.347 55.000 4.80 4.80 0.00 6.46
603 615 0.652592 CGATCAAGACAATGGACGGC 59.347 55.000 0.00 0.00 0.00 5.68
604 616 0.652592 GCGATCAAGACAATGGACGG 59.347 55.000 0.00 0.00 0.00 4.79
605 617 1.325640 CAGCGATCAAGACAATGGACG 59.674 52.381 0.00 0.00 0.00 4.79
606 618 2.621338 TCAGCGATCAAGACAATGGAC 58.379 47.619 0.00 0.00 0.00 4.02
607 619 3.333029 TTCAGCGATCAAGACAATGGA 57.667 42.857 0.00 0.00 0.00 3.41
608 620 3.376234 ACATTCAGCGATCAAGACAATGG 59.624 43.478 0.00 0.00 0.00 3.16
609 621 4.611310 ACATTCAGCGATCAAGACAATG 57.389 40.909 0.00 0.00 0.00 2.82
610 622 5.423015 ACTACATTCAGCGATCAAGACAAT 58.577 37.500 0.00 0.00 0.00 2.71
611 623 4.820897 ACTACATTCAGCGATCAAGACAA 58.179 39.130 0.00 0.00 0.00 3.18
612 624 4.456280 ACTACATTCAGCGATCAAGACA 57.544 40.909 0.00 0.00 0.00 3.41
613 625 6.887376 TTTACTACATTCAGCGATCAAGAC 57.113 37.500 0.00 0.00 0.00 3.01
614 626 6.535150 CCTTTTACTACATTCAGCGATCAAGA 59.465 38.462 0.00 0.00 0.00 3.02
615 627 6.238211 CCCTTTTACTACATTCAGCGATCAAG 60.238 42.308 0.00 0.00 0.00 3.02
616 628 5.584649 CCCTTTTACTACATTCAGCGATCAA 59.415 40.000 0.00 0.00 0.00 2.57
617 629 5.116180 CCCTTTTACTACATTCAGCGATCA 58.884 41.667 0.00 0.00 0.00 2.92
618 630 5.116882 ACCCTTTTACTACATTCAGCGATC 58.883 41.667 0.00 0.00 0.00 3.69
619 631 5.099042 ACCCTTTTACTACATTCAGCGAT 57.901 39.130 0.00 0.00 0.00 4.58
620 632 4.546829 ACCCTTTTACTACATTCAGCGA 57.453 40.909 0.00 0.00 0.00 4.93
621 633 4.142687 CCAACCCTTTTACTACATTCAGCG 60.143 45.833 0.00 0.00 0.00 5.18
622 634 4.380550 GCCAACCCTTTTACTACATTCAGC 60.381 45.833 0.00 0.00 0.00 4.26
623 635 5.010282 AGCCAACCCTTTTACTACATTCAG 58.990 41.667 0.00 0.00 0.00 3.02
624 636 4.993028 AGCCAACCCTTTTACTACATTCA 58.007 39.130 0.00 0.00 0.00 2.57
625 637 5.066117 GCTAGCCAACCCTTTTACTACATTC 59.934 44.000 2.29 0.00 0.00 2.67
626 638 4.948004 GCTAGCCAACCCTTTTACTACATT 59.052 41.667 2.29 0.00 0.00 2.71
627 639 4.227527 AGCTAGCCAACCCTTTTACTACAT 59.772 41.667 12.13 0.00 0.00 2.29
628 640 3.585732 AGCTAGCCAACCCTTTTACTACA 59.414 43.478 12.13 0.00 0.00 2.74
629 641 4.081031 AGAGCTAGCCAACCCTTTTACTAC 60.081 45.833 12.13 0.00 0.00 2.73
630 642 4.101856 AGAGCTAGCCAACCCTTTTACTA 58.898 43.478 12.13 0.00 0.00 1.82
631 643 2.913617 AGAGCTAGCCAACCCTTTTACT 59.086 45.455 12.13 0.00 0.00 2.24
632 644 3.351794 AGAGCTAGCCAACCCTTTTAC 57.648 47.619 12.13 0.00 0.00 2.01
633 645 4.686122 GCATAGAGCTAGCCAACCCTTTTA 60.686 45.833 12.13 0.00 41.15 1.52
634 646 3.891049 CATAGAGCTAGCCAACCCTTTT 58.109 45.455 12.13 0.00 0.00 2.27
635 647 2.422093 GCATAGAGCTAGCCAACCCTTT 60.422 50.000 12.13 0.00 41.15 3.11
636 648 1.141858 GCATAGAGCTAGCCAACCCTT 59.858 52.381 12.13 0.00 41.15 3.95
637 649 0.761802 GCATAGAGCTAGCCAACCCT 59.238 55.000 12.13 3.90 41.15 4.34
638 650 0.601311 CGCATAGAGCTAGCCAACCC 60.601 60.000 12.13 0.00 42.61 4.11
639 651 0.601311 CCGCATAGAGCTAGCCAACC 60.601 60.000 12.13 0.00 42.61 3.77
640 652 0.389391 TCCGCATAGAGCTAGCCAAC 59.611 55.000 12.13 3.47 42.61 3.77
641 653 0.389391 GTCCGCATAGAGCTAGCCAA 59.611 55.000 12.13 0.00 42.61 4.52
642 654 1.796190 CGTCCGCATAGAGCTAGCCA 61.796 60.000 12.13 0.00 42.61 4.75
643 655 1.081108 CGTCCGCATAGAGCTAGCC 60.081 63.158 12.13 2.81 42.61 3.93
644 656 0.523966 ATCGTCCGCATAGAGCTAGC 59.476 55.000 6.62 6.62 42.61 3.42
645 657 2.080693 AGATCGTCCGCATAGAGCTAG 58.919 52.381 0.00 0.00 42.61 3.42
646 658 2.186532 AGATCGTCCGCATAGAGCTA 57.813 50.000 0.00 0.00 42.61 3.32
647 659 1.268352 GAAGATCGTCCGCATAGAGCT 59.732 52.381 0.00 0.00 42.61 4.09
648 660 1.692296 GAAGATCGTCCGCATAGAGC 58.308 55.000 0.00 0.00 40.87 4.09
649 661 1.957089 CGAAGATCGTCCGCATAGAG 58.043 55.000 2.90 0.00 34.72 2.43
660 672 0.108138 AAGCCCTGGAACGAAGATCG 60.108 55.000 0.00 0.00 46.93 3.69
661 673 1.208293 AGAAGCCCTGGAACGAAGATC 59.792 52.381 0.00 0.00 0.00 2.75
662 674 1.065854 CAGAAGCCCTGGAACGAAGAT 60.066 52.381 0.00 0.00 39.23 2.40
663 675 0.321671 CAGAAGCCCTGGAACGAAGA 59.678 55.000 0.00 0.00 39.23 2.87
664 676 2.846371 CAGAAGCCCTGGAACGAAG 58.154 57.895 0.00 0.00 39.23 3.79
672 684 2.755103 GTCCAATAAACCAGAAGCCCTG 59.245 50.000 0.00 0.00 42.55 4.45
673 685 2.649816 AGTCCAATAAACCAGAAGCCCT 59.350 45.455 0.00 0.00 0.00 5.19
674 686 2.755103 CAGTCCAATAAACCAGAAGCCC 59.245 50.000 0.00 0.00 0.00 5.19
675 687 3.421844 ACAGTCCAATAAACCAGAAGCC 58.578 45.455 0.00 0.00 0.00 4.35
676 688 3.440522 GGACAGTCCAATAAACCAGAAGC 59.559 47.826 15.43 0.00 36.28 3.86
677 689 4.697352 CAGGACAGTCCAATAAACCAGAAG 59.303 45.833 22.31 0.00 39.61 2.85
678 690 4.349636 TCAGGACAGTCCAATAAACCAGAA 59.650 41.667 22.31 0.00 39.61 3.02
679 691 3.907474 TCAGGACAGTCCAATAAACCAGA 59.093 43.478 22.31 2.60 39.61 3.86
680 692 4.003648 GTCAGGACAGTCCAATAAACCAG 58.996 47.826 22.31 0.34 39.61 4.00
681 693 3.556213 CGTCAGGACAGTCCAATAAACCA 60.556 47.826 22.31 0.00 39.61 3.67
682 694 3.000727 CGTCAGGACAGTCCAATAAACC 58.999 50.000 22.31 1.41 39.61 3.27
683 695 3.000727 CCGTCAGGACAGTCCAATAAAC 58.999 50.000 22.31 10.35 39.61 2.01
684 696 2.027561 CCCGTCAGGACAGTCCAATAAA 60.028 50.000 22.31 0.00 39.61 1.40
685 697 1.553248 CCCGTCAGGACAGTCCAATAA 59.447 52.381 22.31 0.80 39.61 1.40
686 698 1.191535 CCCGTCAGGACAGTCCAATA 58.808 55.000 22.31 3.39 39.61 1.90
687 699 1.983224 CCCGTCAGGACAGTCCAAT 59.017 57.895 22.31 0.00 39.61 3.16
688 700 2.879233 GCCCGTCAGGACAGTCCAA 61.879 63.158 22.31 6.48 39.61 3.53
689 701 3.311110 GCCCGTCAGGACAGTCCA 61.311 66.667 22.31 0.00 39.61 4.02
690 702 4.436998 CGCCCGTCAGGACAGTCC 62.437 72.222 12.25 12.25 41.02 3.85
691 703 3.681835 ACGCCCGTCAGGACAGTC 61.682 66.667 0.00 0.00 41.02 3.51
692 704 3.991051 CACGCCCGTCAGGACAGT 61.991 66.667 0.00 0.00 41.02 3.55
693 705 3.991051 ACACGCCCGTCAGGACAG 61.991 66.667 0.00 0.00 41.02 3.51
694 706 4.293648 CACACGCCCGTCAGGACA 62.294 66.667 0.00 0.00 41.02 4.02
698 710 2.989881 TAGAGCACACGCCCGTCAG 61.990 63.158 0.00 0.00 39.83 3.51
699 711 2.986979 TAGAGCACACGCCCGTCA 60.987 61.111 0.00 0.00 39.83 4.35
700 712 2.506438 GTAGAGCACACGCCCGTC 60.506 66.667 0.00 0.00 39.83 4.79
701 713 3.299977 TGTAGAGCACACGCCCGT 61.300 61.111 0.00 0.00 39.83 5.28
709 721 2.434359 GGTGGCCGTGTAGAGCAC 60.434 66.667 0.00 0.00 44.36 4.40
710 722 2.603473 AGGTGGCCGTGTAGAGCA 60.603 61.111 0.00 0.00 0.00 4.26
711 723 2.125512 CAGGTGGCCGTGTAGAGC 60.126 66.667 0.00 0.00 0.00 4.09
712 724 0.389948 GTTCAGGTGGCCGTGTAGAG 60.390 60.000 0.00 0.00 0.00 2.43
713 725 1.669440 GTTCAGGTGGCCGTGTAGA 59.331 57.895 0.00 0.00 0.00 2.59
714 726 1.375523 GGTTCAGGTGGCCGTGTAG 60.376 63.158 0.00 0.00 0.00 2.74
715 727 2.141448 TGGTTCAGGTGGCCGTGTA 61.141 57.895 0.00 0.00 0.00 2.90
716 728 3.484806 TGGTTCAGGTGGCCGTGT 61.485 61.111 0.00 0.00 0.00 4.49
717 729 2.978010 GTGGTTCAGGTGGCCGTG 60.978 66.667 0.00 0.00 0.00 4.94
718 730 4.619227 CGTGGTTCAGGTGGCCGT 62.619 66.667 0.00 0.00 0.00 5.68
719 731 3.818121 TTCGTGGTTCAGGTGGCCG 62.818 63.158 0.00 0.00 0.00 6.13
720 732 1.966451 CTTCGTGGTTCAGGTGGCC 60.966 63.158 0.00 0.00 0.00 5.36
721 733 2.617274 GCTTCGTGGTTCAGGTGGC 61.617 63.158 0.00 0.00 0.00 5.01
722 734 2.317609 CGCTTCGTGGTTCAGGTGG 61.318 63.158 0.00 0.00 0.00 4.61
723 735 1.300620 TCGCTTCGTGGTTCAGGTG 60.301 57.895 0.00 0.00 0.00 4.00
724 736 1.300697 GTCGCTTCGTGGTTCAGGT 60.301 57.895 0.00 0.00 0.00 4.00
725 737 0.600255 AAGTCGCTTCGTGGTTCAGG 60.600 55.000 0.00 0.00 0.00 3.86
726 738 1.217882 AAAGTCGCTTCGTGGTTCAG 58.782 50.000 0.00 0.00 0.00 3.02
727 739 1.595794 GAAAAGTCGCTTCGTGGTTCA 59.404 47.619 0.00 0.00 0.00 3.18
728 740 1.396815 CGAAAAGTCGCTTCGTGGTTC 60.397 52.381 0.00 0.00 41.08 3.62
729 741 0.580104 CGAAAAGTCGCTTCGTGGTT 59.420 50.000 0.00 0.00 41.08 3.67
730 742 1.219522 CCGAAAAGTCGCTTCGTGGT 61.220 55.000 4.61 0.00 46.28 4.16
731 743 1.219522 ACCGAAAAGTCGCTTCGTGG 61.220 55.000 4.61 5.68 46.28 4.94
732 744 0.111266 CACCGAAAAGTCGCTTCGTG 60.111 55.000 4.61 0.59 46.28 4.35
733 745 1.219522 CCACCGAAAAGTCGCTTCGT 61.220 55.000 4.61 0.00 46.28 3.85
925 939 2.030412 CTGCACCGTGTACCAGCA 59.970 61.111 0.00 0.00 0.00 4.41
983 997 2.721167 ATGCCTTGCGCCTCGACTA 61.721 57.895 4.18 0.00 36.24 2.59
1195 1216 6.217294 GTGAGACAAAAACTAGTAGCTCTGT 58.783 40.000 0.00 0.00 0.00 3.41
1226 1247 7.500559 GCAACCAGATCTAATCCTAACTTCATT 59.499 37.037 0.00 0.00 0.00 2.57
1323 1364 2.766229 TATAGGCCGGGCAGCACA 60.766 61.111 31.59 9.74 0.00 4.57
1470 3130 1.202417 CGATTACCTGCGTGTCCATCT 60.202 52.381 0.00 0.00 0.00 2.90
1493 3153 6.318648 AGCACACAAAAGAAATCAGTTCTACA 59.681 34.615 0.00 0.00 46.36 2.74
1632 3293 5.810074 GCACGCAAATAATCCCAGTAATTTT 59.190 36.000 0.00 0.00 0.00 1.82
1742 3403 9.383519 CAAAATCTTTTCCTAGTATAGCACTCA 57.616 33.333 0.00 0.00 37.37 3.41
2096 3872 6.674760 GCTCCCACGAATACAAATTGTAGAAC 60.675 42.308 11.70 4.86 36.14 3.01
2267 4058 5.337554 CACATAACATGATTTGTCAGCCTG 58.662 41.667 0.00 0.00 37.68 4.85
2341 4133 2.046023 CTGATCCGGGCAGCACAA 60.046 61.111 0.00 0.00 0.00 3.33
2506 5057 5.775195 TCCAAGACTGACATTGTTCTCTCTA 59.225 40.000 0.00 0.00 0.00 2.43
2599 5153 1.094785 ACTTGCAACACAGCGTCTTT 58.905 45.000 0.00 0.00 37.31 2.52
2663 5217 2.346803 TGCTTTCATCTCCGCAAGTAC 58.653 47.619 0.00 0.00 0.00 2.73
2680 5234 4.074970 AGTTGAATTCTGGATCGTTTGCT 58.925 39.130 7.05 0.00 0.00 3.91
2737 5291 3.004862 CCCGTTAACCCACATAAGTGTC 58.995 50.000 0.00 0.00 44.39 3.67
2975 5530 8.694540 TCTAGCCGTACCTGTTAATATTGTTTA 58.305 33.333 0.00 0.00 0.00 2.01
2983 5538 5.279356 GCCTTATCTAGCCGTACCTGTTAAT 60.279 44.000 0.00 0.00 0.00 1.40
3003 5558 3.701542 TGAGAGATTCACATCTACGCCTT 59.298 43.478 0.00 0.00 40.14 4.35
3034 5589 9.816354 AGCTTACAACATGAAAAGTATTTGTTT 57.184 25.926 0.00 0.00 39.02 2.83
3040 5595 9.686683 ATTAGGAGCTTACAACATGAAAAGTAT 57.313 29.630 0.00 0.00 0.00 2.12
3104 5677 7.283127 TCTGTTTCTATAGCCAATTCCATTGAC 59.717 37.037 0.00 0.00 42.83 3.18
3188 5761 1.618343 CTCCACAAAACCCCCATTGAC 59.382 52.381 0.00 0.00 0.00 3.18
3226 5799 6.680810 TGAACCAGCTTATGAAATTCACTTG 58.319 36.000 0.00 0.00 0.00 3.16
3266 5839 2.208431 CATCCATCCTCGAACTCTTGC 58.792 52.381 0.00 0.00 0.00 4.01
3314 5887 3.181461 CGGAGGGATCAGCAAGAGTTATT 60.181 47.826 0.00 0.00 0.00 1.40
3338 5911 5.593909 TGTCGGAATGGATAATCATTTTGCT 59.406 36.000 0.00 0.00 37.47 3.91
3381 5954 2.308866 ACTAGTTTGCCTGCCATTAGGT 59.691 45.455 0.00 0.00 40.11 3.08
3383 5956 3.609853 TCACTAGTTTGCCTGCCATTAG 58.390 45.455 0.00 0.00 0.00 1.73
3384 5957 3.263170 TCTCACTAGTTTGCCTGCCATTA 59.737 43.478 0.00 0.00 0.00 1.90
3388 5961 2.409948 ATCTCACTAGTTTGCCTGCC 57.590 50.000 0.00 0.00 0.00 4.85
3427 6001 1.795768 CCTCACGCTTTTCAGTAGCA 58.204 50.000 0.00 0.00 38.55 3.49
3476 6050 1.151668 ATCAGCGACTTGTTCAGCAC 58.848 50.000 0.00 0.00 0.00 4.40
3487 6061 2.084546 AGGTTTTTGCCTATCAGCGAC 58.915 47.619 0.00 0.00 37.04 5.19
3528 6102 1.215244 CATAGCAGCTCACACATCCG 58.785 55.000 0.00 0.00 0.00 4.18
3531 6105 2.686602 CGCATAGCAGCTCACACAT 58.313 52.632 0.00 0.00 0.00 3.21
3560 6134 0.032815 GGCGATCTAGCAGGGAGAAC 59.967 60.000 0.00 0.00 39.27 3.01
3592 6166 1.376466 CCACCAACCAGAGTCCCAG 59.624 63.158 0.00 0.00 0.00 4.45
3624 6198 5.589452 GCATCTCATCTTCTTCAACAATCCT 59.411 40.000 0.00 0.00 0.00 3.24
3633 6207 1.257415 CACGCGCATCTCATCTTCTTC 59.743 52.381 5.73 0.00 0.00 2.87
3711 6285 2.352805 AAGGCTGCCTTTCGAGGG 59.647 61.111 27.70 2.61 41.69 4.30
3773 6347 1.140852 CCCTCGTAATGGGCAAGATGA 59.859 52.381 0.00 0.00 37.99 2.92
3888 6462 3.320626 ACTTTTACCGTCCGCTCTTAAC 58.679 45.455 0.00 0.00 0.00 2.01
3893 6467 2.643933 ACTACTTTTACCGTCCGCTC 57.356 50.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.