Multiple sequence alignment - TraesCS7A01G420100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G420100 chr7A 100.000 2042 0 0 1 2042 611497192 611499233 0.000000e+00 3771.0
1 TraesCS7A01G420100 chr7A 98.684 76 0 1 1308 1382 19014817 19014742 1.550000e-27 134.0
2 TraesCS7A01G420100 chr7A 100.000 43 0 0 2449 2491 611499640 611499682 2.050000e-11 80.5
3 TraesCS7A01G420100 chr7B 92.726 1306 82 5 1 1305 571576549 571577842 0.000000e+00 1873.0
4 TraesCS7A01G420100 chr7B 88.288 111 6 3 1856 1959 571578134 571578244 2.600000e-25 126.0
5 TraesCS7A01G420100 chr7B 93.023 43 3 0 2449 2491 571578299 571578341 2.070000e-06 63.9
6 TraesCS7A01G420100 chr7D 91.258 1327 87 10 1 1305 531084901 531086220 0.000000e+00 1781.0
7 TraesCS7A01G420100 chr7D 81.375 349 60 4 326 671 530912387 530912041 1.890000e-71 279.0
8 TraesCS7A01G420100 chr7D 83.410 217 11 5 1775 1966 531086441 531086657 7.080000e-41 178.0
9 TraesCS7A01G420100 chr7D 96.000 75 2 1 1659 1733 531086356 531086429 1.210000e-23 121.0
10 TraesCS7A01G420100 chr7D 100.000 39 0 0 1441 1479 46707290 46707328 3.440000e-09 73.1
11 TraesCS7A01G420100 chr7D 89.655 58 2 2 1441 1498 249789268 249789215 1.240000e-08 71.3
12 TraesCS7A01G420100 chr7D 97.143 35 0 1 2457 2491 531086718 531086751 9.620000e-05 58.4
13 TraesCS7A01G420100 chr4A 100.000 76 0 0 1307 1382 208937896 208937821 9.290000e-30 141.0
14 TraesCS7A01G420100 chr4D 82.456 171 18 5 1443 1613 455430247 455430089 3.340000e-29 139.0
15 TraesCS7A01G420100 chr4D 81.529 157 16 9 1441 1596 442397280 442397424 1.570000e-22 117.0
16 TraesCS7A01G420100 chr3A 98.701 77 0 1 1307 1382 658612264 658612340 4.320000e-28 135.0
17 TraesCS7A01G420100 chr3A 98.684 76 0 1 1308 1382 658617314 658617389 1.550000e-27 134.0
18 TraesCS7A01G420100 chr3A 97.403 77 1 1 1307 1382 658607216 658607292 2.010000e-26 130.0
19 TraesCS7A01G420100 chr6A 97.436 78 2 0 1308 1385 579388168 579388091 1.550000e-27 134.0
20 TraesCS7A01G420100 chr6A 95.181 83 1 3 1301 1382 20823038 20822958 7.230000e-26 128.0
21 TraesCS7A01G420100 chr5A 98.667 75 0 1 1309 1382 657240707 657240781 5.590000e-27 132.0
22 TraesCS7A01G420100 chr5D 81.765 170 17 6 1447 1616 504564974 504564819 2.010000e-26 130.0
23 TraesCS7A01G420100 chr2A 96.203 79 3 0 1304 1382 499766375 499766453 2.010000e-26 130.0
24 TraesCS7A01G420100 chr1B 80.769 156 18 4 1441 1596 268398360 268398217 7.280000e-21 111.0
25 TraesCS7A01G420100 chr2D 86.408 103 9 4 1440 1542 14893117 14893020 9.420000e-20 108.0
26 TraesCS7A01G420100 chr3D 97.561 41 1 0 1439 1479 574869861 574869901 1.240000e-08 71.3
27 TraesCS7A01G420100 chr6B 92.157 51 0 3 1443 1493 643078940 643078894 4.450000e-08 69.4
28 TraesCS7A01G420100 chr5B 85.714 63 6 3 1443 1505 544375042 544375101 2.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G420100 chr7A 611497192 611499682 2490 False 1925.750000 3771 100.000000 1 2491 2 chr7A.!!$F1 2490
1 TraesCS7A01G420100 chr7B 571576549 571578341 1792 False 687.633333 1873 91.345667 1 2491 3 chr7B.!!$F1 2490
2 TraesCS7A01G420100 chr7D 531084901 531086751 1850 False 534.600000 1781 91.952750 1 2491 4 chr7D.!!$F2 2490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 328 0.460284 GAGCGTGACATGTACAGGGG 60.46 60.0 12.79 1.47 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2106 0.030773 TCTCTCTCGCACACACACAC 59.969 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.665190 ACAAGATTCTTCTGTTCCCGAC 58.335 45.455 0.00 0.00 30.72 4.79
56 57 1.947642 CCCGACGTATACGCCTTGC 60.948 63.158 24.64 8.57 44.43 4.01
86 87 0.461339 CACCGTAAATCCCCTCACCG 60.461 60.000 0.00 0.00 0.00 4.94
101 102 3.007635 CTCACCGGGGTAAATCTGAAAC 58.992 50.000 2.12 0.00 0.00 2.78
106 107 3.007635 CGGGGTAAATCTGAAACTCCAC 58.992 50.000 7.56 0.00 32.99 4.02
107 108 3.353557 GGGGTAAATCTGAAACTCCACC 58.646 50.000 3.06 0.00 33.68 4.61
122 123 2.939103 CTCCACCACATTCTCCGATTTC 59.061 50.000 0.00 0.00 0.00 2.17
147 148 0.716108 CACCGAGTTTGATCGAGCAC 59.284 55.000 1.08 0.00 45.56 4.40
228 229 7.255381 CCCTGCAGAATCCATGAAATTAAGTAG 60.255 40.741 17.39 0.00 0.00 2.57
261 265 2.862512 ACGCAACACACAAGAAACTTG 58.137 42.857 9.51 9.51 0.00 3.16
272 276 7.382218 ACACACAAGAAACTTGAAGAAAACAAG 59.618 33.333 16.65 0.00 46.69 3.16
292 296 4.363991 AGAGTGCCAGAAGAAGTTGATT 57.636 40.909 0.00 0.00 0.00 2.57
296 305 3.817647 GTGCCAGAAGAAGTTGATTCAGT 59.182 43.478 1.43 0.00 40.67 3.41
297 306 4.276926 GTGCCAGAAGAAGTTGATTCAGTT 59.723 41.667 1.43 0.00 40.67 3.16
298 307 4.516698 TGCCAGAAGAAGTTGATTCAGTTC 59.483 41.667 3.69 3.69 40.67 3.01
299 308 4.516698 GCCAGAAGAAGTTGATTCAGTTCA 59.483 41.667 11.38 0.00 40.67 3.18
300 309 5.334724 GCCAGAAGAAGTTGATTCAGTTCAG 60.335 44.000 11.38 0.04 40.67 3.02
303 312 5.700373 AGAAGAAGTTGATTCAGTTCAGAGC 59.300 40.000 11.38 0.00 40.67 4.09
319 328 0.460284 GAGCGTGACATGTACAGGGG 60.460 60.000 12.79 1.47 0.00 4.79
321 330 0.739813 GCGTGACATGTACAGGGGAC 60.740 60.000 12.79 6.78 0.00 4.46
415 428 1.148157 CTCCGCTAGTGATTGTGCCG 61.148 60.000 4.44 0.00 0.00 5.69
571 584 3.123620 CAGGCGCTCACCAGAAGC 61.124 66.667 7.64 0.00 0.00 3.86
598 611 1.521450 CCAGCTGAAACCAGTGCCTG 61.521 60.000 17.39 0.00 34.23 4.85
605 618 1.109323 AAACCAGTGCCTGAGGTTGC 61.109 55.000 0.00 0.00 44.44 4.17
622 635 2.101185 CGCGCTCTCACGATCACT 59.899 61.111 5.56 0.00 34.06 3.41
684 697 2.361757 CAGGTGCACTCATGGAAAACAA 59.638 45.455 17.98 0.00 0.00 2.83
710 723 7.965718 TGAGAAAAGAAAACCCAAATGATGAT 58.034 30.769 0.00 0.00 0.00 2.45
711 724 8.090214 TGAGAAAAGAAAACCCAAATGATGATC 58.910 33.333 0.00 0.00 0.00 2.92
712 725 7.965718 AGAAAAGAAAACCCAAATGATGATCA 58.034 30.769 0.00 0.00 0.00 2.92
724 737 7.307514 CCCAAATGATGATCAACTGTTTTTGTG 60.308 37.037 12.96 2.20 0.00 3.33
740 753 8.389779 TGTTTTTGTGCAAGTATCTGAATCTA 57.610 30.769 0.00 0.00 0.00 1.98
742 755 9.846248 GTTTTTGTGCAAGTATCTGAATCTATT 57.154 29.630 0.00 0.00 0.00 1.73
750 763 7.387397 GCAAGTATCTGAATCTATTTAGCAGCT 59.613 37.037 0.00 0.00 0.00 4.24
751 764 9.270640 CAAGTATCTGAATCTATTTAGCAGCTT 57.729 33.333 0.00 0.00 0.00 3.74
766 779 8.561738 TTTAGCAGCTTAATTATATACCAGGC 57.438 34.615 0.00 0.00 0.00 4.85
808 821 1.067250 GATGAGCCTCTGCGTCTCC 59.933 63.158 0.00 0.00 44.33 3.71
941 954 7.205992 CAGTAATGTATACAGAGCACAGACAT 58.794 38.462 11.91 0.00 0.00 3.06
942 955 7.708322 CAGTAATGTATACAGAGCACAGACATT 59.292 37.037 11.91 0.00 38.95 2.71
957 985 8.445493 AGCACAGACATTTTCTTTTTCTTTTTG 58.555 29.630 0.00 0.00 28.96 2.44
960 988 9.487790 ACAGACATTTTCTTTTTCTTTTTGACA 57.512 25.926 0.00 0.00 28.96 3.58
985 1013 5.490139 ACAAAACTGAGACAATGTCTGTG 57.510 39.130 21.81 14.57 43.53 3.66
989 1017 2.632028 ACTGAGACAATGTCTGTGAGCT 59.368 45.455 21.81 0.00 43.53 4.09
991 1019 2.629617 TGAGACAATGTCTGTGAGCTCA 59.370 45.455 21.81 13.74 43.53 4.26
1170 1198 0.105964 TGTTGACCTTCACGTCCTGG 59.894 55.000 0.00 0.00 31.35 4.45
1203 1231 2.103143 CCCGTCTCTGCTAGCACG 59.897 66.667 14.93 15.68 0.00 5.34
1277 1305 2.535984 CACGTCAACGGAGCATCTAATC 59.464 50.000 7.53 0.00 44.95 1.75
1280 1308 3.804325 CGTCAACGGAGCATCTAATCATT 59.196 43.478 0.00 0.00 35.37 2.57
1285 1313 6.258727 TCAACGGAGCATCTAATCATTTTCTC 59.741 38.462 0.00 0.00 33.73 2.87
1286 1314 4.747108 ACGGAGCATCTAATCATTTTCTCG 59.253 41.667 0.00 0.00 33.73 4.04
1305 1333 1.334869 CGCATGGAAAAGGATAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
1306 1334 2.659428 GCATGGAAAAGGATAGCACCT 58.341 47.619 0.00 0.00 42.69 4.00
1331 1359 4.610605 TTTTTCGAAAAGGGGGAATTCC 57.389 40.909 21.53 16.74 0.00 3.01
1341 1369 2.193248 GGAATTCCCCGGCCTCTG 59.807 66.667 14.03 0.00 0.00 3.35
1342 1370 2.517166 GAATTCCCCGGCCTCTGC 60.517 66.667 0.00 0.00 0.00 4.26
1343 1371 3.338250 AATTCCCCGGCCTCTGCA 61.338 61.111 0.00 0.00 40.13 4.41
1344 1372 2.631012 GAATTCCCCGGCCTCTGCAT 62.631 60.000 0.00 0.00 40.13 3.96
1345 1373 2.631012 AATTCCCCGGCCTCTGCATC 62.631 60.000 0.00 0.00 40.13 3.91
1347 1375 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
1348 1376 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
1349 1377 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
1350 1378 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
1351 1379 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
1352 1380 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
1353 1381 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
1362 1390 3.532892 CATCAGAAAGATGCATACGGC 57.467 47.619 0.00 0.00 46.90 5.68
1363 1391 1.953559 TCAGAAAGATGCATACGGCC 58.046 50.000 0.00 0.00 43.89 6.13
1364 1392 1.209261 TCAGAAAGATGCATACGGCCA 59.791 47.619 2.24 0.00 43.89 5.36
1365 1393 2.158769 TCAGAAAGATGCATACGGCCAT 60.159 45.455 2.24 0.00 43.89 4.40
1366 1394 2.225019 CAGAAAGATGCATACGGCCATC 59.775 50.000 2.24 0.00 43.89 3.51
1367 1395 2.105477 AGAAAGATGCATACGGCCATCT 59.895 45.455 2.24 0.00 43.89 2.90
1368 1396 2.645838 AAGATGCATACGGCCATCTT 57.354 45.000 2.24 5.69 41.39 2.40
1369 1397 3.769739 AAGATGCATACGGCCATCTTA 57.230 42.857 11.07 0.00 42.85 2.10
1370 1398 3.988976 AGATGCATACGGCCATCTTAT 57.011 42.857 2.24 0.00 43.89 1.73
1371 1399 4.292186 AGATGCATACGGCCATCTTATT 57.708 40.909 2.24 0.00 43.89 1.40
1372 1400 5.420725 AGATGCATACGGCCATCTTATTA 57.579 39.130 2.24 0.00 43.89 0.98
1373 1401 5.804639 AGATGCATACGGCCATCTTATTAA 58.195 37.500 2.24 0.00 43.89 1.40
1374 1402 5.643777 AGATGCATACGGCCATCTTATTAAC 59.356 40.000 2.24 0.00 43.89 2.01
1375 1403 4.069304 TGCATACGGCCATCTTATTAACC 58.931 43.478 2.24 0.00 43.89 2.85
1376 1404 4.069304 GCATACGGCCATCTTATTAACCA 58.931 43.478 2.24 0.00 36.11 3.67
1377 1405 4.517453 GCATACGGCCATCTTATTAACCAA 59.483 41.667 2.24 0.00 36.11 3.67
1378 1406 5.009210 GCATACGGCCATCTTATTAACCAAA 59.991 40.000 2.24 0.00 36.11 3.28
1379 1407 6.460399 GCATACGGCCATCTTATTAACCAAAA 60.460 38.462 2.24 0.00 36.11 2.44
1380 1408 5.986501 ACGGCCATCTTATTAACCAAAAA 57.013 34.783 2.24 0.00 0.00 1.94
1404 1432 4.714632 TGCCTTTAAGAACTTGCAGTACT 58.285 39.130 0.00 0.00 0.00 2.73
1427 1459 8.723942 ACTAAGAGATGTATTGCTTTTAGTGG 57.276 34.615 0.00 0.00 39.27 4.00
1428 1460 7.770897 ACTAAGAGATGTATTGCTTTTAGTGGG 59.229 37.037 0.00 0.00 39.27 4.61
1429 1461 5.440610 AGAGATGTATTGCTTTTAGTGGGG 58.559 41.667 0.00 0.00 0.00 4.96
1430 1462 4.536765 AGATGTATTGCTTTTAGTGGGGG 58.463 43.478 0.00 0.00 0.00 5.40
1431 1463 4.229582 AGATGTATTGCTTTTAGTGGGGGA 59.770 41.667 0.00 0.00 0.00 4.81
1432 1464 3.963129 TGTATTGCTTTTAGTGGGGGAG 58.037 45.455 0.00 0.00 0.00 4.30
1433 1465 3.332485 TGTATTGCTTTTAGTGGGGGAGT 59.668 43.478 0.00 0.00 0.00 3.85
1434 1466 4.536888 TGTATTGCTTTTAGTGGGGGAGTA 59.463 41.667 0.00 0.00 0.00 2.59
1435 1467 3.428413 TTGCTTTTAGTGGGGGAGTAC 57.572 47.619 0.00 0.00 0.00 2.73
1436 1468 1.276989 TGCTTTTAGTGGGGGAGTACG 59.723 52.381 0.00 0.00 0.00 3.67
1437 1469 1.551883 GCTTTTAGTGGGGGAGTACGA 59.448 52.381 0.00 0.00 0.00 3.43
1438 1470 2.676176 GCTTTTAGTGGGGGAGTACGAC 60.676 54.545 0.00 0.00 0.00 4.34
1439 1471 2.610438 TTTAGTGGGGGAGTACGACT 57.390 50.000 0.00 0.00 0.00 4.18
1440 1472 3.737559 TTTAGTGGGGGAGTACGACTA 57.262 47.619 0.00 0.00 0.00 2.59
1441 1473 3.737559 TTAGTGGGGGAGTACGACTAA 57.262 47.619 0.00 0.00 36.99 2.24
1442 1474 2.842645 AGTGGGGGAGTACGACTAAT 57.157 50.000 0.00 0.00 0.00 1.73
1443 1475 3.111741 AGTGGGGGAGTACGACTAATT 57.888 47.619 0.00 0.00 0.00 1.40
1444 1476 3.447950 AGTGGGGGAGTACGACTAATTT 58.552 45.455 0.00 0.00 0.00 1.82
1445 1477 3.842436 AGTGGGGGAGTACGACTAATTTT 59.158 43.478 0.00 0.00 0.00 1.82
1446 1478 5.025453 AGTGGGGGAGTACGACTAATTTTA 58.975 41.667 0.00 0.00 0.00 1.52
1447 1479 5.484998 AGTGGGGGAGTACGACTAATTTTAA 59.515 40.000 0.00 0.00 0.00 1.52
1448 1480 5.582269 GTGGGGGAGTACGACTAATTTTAAC 59.418 44.000 0.00 0.00 0.00 2.01
1449 1481 5.248020 TGGGGGAGTACGACTAATTTTAACA 59.752 40.000 0.00 0.00 0.00 2.41
1450 1482 6.070078 TGGGGGAGTACGACTAATTTTAACAT 60.070 38.462 0.00 0.00 0.00 2.71
1451 1483 6.259387 GGGGGAGTACGACTAATTTTAACATG 59.741 42.308 0.00 0.00 0.00 3.21
1452 1484 6.238293 GGGGAGTACGACTAATTTTAACATGC 60.238 42.308 0.00 0.00 0.00 4.06
1453 1485 6.537660 GGGAGTACGACTAATTTTAACATGCT 59.462 38.462 0.00 0.00 0.00 3.79
1454 1486 7.254353 GGGAGTACGACTAATTTTAACATGCTC 60.254 40.741 0.00 0.00 0.00 4.26
1455 1487 7.254353 GGAGTACGACTAATTTTAACATGCTCC 60.254 40.741 0.00 0.00 0.00 4.70
1456 1488 5.813080 ACGACTAATTTTAACATGCTCCC 57.187 39.130 0.00 0.00 0.00 4.30
1457 1489 5.497474 ACGACTAATTTTAACATGCTCCCT 58.503 37.500 0.00 0.00 0.00 4.20
1458 1490 5.585047 ACGACTAATTTTAACATGCTCCCTC 59.415 40.000 0.00 0.00 0.00 4.30
1459 1491 5.817816 CGACTAATTTTAACATGCTCCCTCT 59.182 40.000 0.00 0.00 0.00 3.69
1460 1492 6.316390 CGACTAATTTTAACATGCTCCCTCTT 59.684 38.462 0.00 0.00 0.00 2.85
1461 1493 7.494625 CGACTAATTTTAACATGCTCCCTCTTA 59.505 37.037 0.00 0.00 0.00 2.10
1462 1494 8.507524 ACTAATTTTAACATGCTCCCTCTTAC 57.492 34.615 0.00 0.00 0.00 2.34
1463 1495 6.775594 AATTTTAACATGCTCCCTCTTACC 57.224 37.500 0.00 0.00 0.00 2.85
1464 1496 5.514500 TTTTAACATGCTCCCTCTTACCT 57.486 39.130 0.00 0.00 0.00 3.08
1465 1497 4.755266 TTAACATGCTCCCTCTTACCTC 57.245 45.455 0.00 0.00 0.00 3.85
1466 1498 1.501582 ACATGCTCCCTCTTACCTCC 58.498 55.000 0.00 0.00 0.00 4.30
1467 1499 1.008938 ACATGCTCCCTCTTACCTCCT 59.991 52.381 0.00 0.00 0.00 3.69
1468 1500 1.691434 CATGCTCCCTCTTACCTCCTC 59.309 57.143 0.00 0.00 0.00 3.71
1469 1501 1.011595 TGCTCCCTCTTACCTCCTCT 58.988 55.000 0.00 0.00 0.00 3.69
1470 1502 1.362932 TGCTCCCTCTTACCTCCTCTT 59.637 52.381 0.00 0.00 0.00 2.85
1471 1503 2.225650 TGCTCCCTCTTACCTCCTCTTT 60.226 50.000 0.00 0.00 0.00 2.52
1472 1504 2.841266 GCTCCCTCTTACCTCCTCTTTT 59.159 50.000 0.00 0.00 0.00 2.27
1473 1505 3.118555 GCTCCCTCTTACCTCCTCTTTTC 60.119 52.174 0.00 0.00 0.00 2.29
1474 1506 4.097418 CTCCCTCTTACCTCCTCTTTTCA 58.903 47.826 0.00 0.00 0.00 2.69
1475 1507 3.838903 TCCCTCTTACCTCCTCTTTTCAC 59.161 47.826 0.00 0.00 0.00 3.18
1476 1508 3.583086 CCCTCTTACCTCCTCTTTTCACA 59.417 47.826 0.00 0.00 0.00 3.58
1477 1509 4.226168 CCCTCTTACCTCCTCTTTTCACAT 59.774 45.833 0.00 0.00 0.00 3.21
1478 1510 5.181748 CCTCTTACCTCCTCTTTTCACATG 58.818 45.833 0.00 0.00 0.00 3.21
1479 1511 4.579869 TCTTACCTCCTCTTTTCACATGC 58.420 43.478 0.00 0.00 0.00 4.06
1480 1512 2.957402 ACCTCCTCTTTTCACATGCA 57.043 45.000 0.00 0.00 0.00 3.96
1481 1513 3.446442 ACCTCCTCTTTTCACATGCAT 57.554 42.857 0.00 0.00 0.00 3.96
1482 1514 3.087031 ACCTCCTCTTTTCACATGCATG 58.913 45.455 25.09 25.09 0.00 4.06
1483 1515 3.245016 ACCTCCTCTTTTCACATGCATGA 60.245 43.478 32.75 10.12 0.00 3.07
1484 1516 3.377485 CCTCCTCTTTTCACATGCATGAG 59.623 47.826 32.75 24.74 0.00 2.90
1485 1517 3.349927 TCCTCTTTTCACATGCATGAGG 58.650 45.455 32.75 24.36 40.47 3.86
1486 1518 2.426024 CCTCTTTTCACATGCATGAGGG 59.574 50.000 32.75 18.26 36.79 4.30
1487 1519 3.349927 CTCTTTTCACATGCATGAGGGA 58.650 45.455 32.75 21.82 0.00 4.20
1488 1520 3.952323 CTCTTTTCACATGCATGAGGGAT 59.048 43.478 32.75 7.36 0.00 3.85
1489 1521 5.114764 TCTTTTCACATGCATGAGGGATA 57.885 39.130 32.75 17.39 0.00 2.59
1490 1522 5.508567 TCTTTTCACATGCATGAGGGATAA 58.491 37.500 32.75 22.11 0.00 1.75
1491 1523 5.591472 TCTTTTCACATGCATGAGGGATAAG 59.409 40.000 32.75 27.89 0.00 1.73
1492 1524 4.776435 TTCACATGCATGAGGGATAAGA 57.224 40.909 32.75 13.08 0.00 2.10
1493 1525 4.776435 TCACATGCATGAGGGATAAGAA 57.224 40.909 32.75 3.76 0.00 2.52
1494 1526 5.314718 TCACATGCATGAGGGATAAGAAT 57.685 39.130 32.75 2.76 0.00 2.40
1495 1527 5.067954 TCACATGCATGAGGGATAAGAATG 58.932 41.667 32.75 15.33 0.00 2.67
1496 1528 4.825634 CACATGCATGAGGGATAAGAATGT 59.174 41.667 32.75 3.65 0.00 2.71
1497 1529 5.999600 CACATGCATGAGGGATAAGAATGTA 59.000 40.000 32.75 0.00 0.00 2.29
1498 1530 6.487668 CACATGCATGAGGGATAAGAATGTAA 59.512 38.462 32.75 0.00 0.00 2.41
1499 1531 6.713903 ACATGCATGAGGGATAAGAATGTAAG 59.286 38.462 32.75 0.00 0.00 2.34
1500 1532 6.499106 TGCATGAGGGATAAGAATGTAAGA 57.501 37.500 0.00 0.00 0.00 2.10
1501 1533 7.083062 TGCATGAGGGATAAGAATGTAAGAT 57.917 36.000 0.00 0.00 0.00 2.40
1502 1534 7.520798 TGCATGAGGGATAAGAATGTAAGATT 58.479 34.615 0.00 0.00 0.00 2.40
1503 1535 8.000709 TGCATGAGGGATAAGAATGTAAGATTT 58.999 33.333 0.00 0.00 0.00 2.17
1504 1536 9.507329 GCATGAGGGATAAGAATGTAAGATTTA 57.493 33.333 0.00 0.00 0.00 1.40
1534 1566 9.911788 AGACCACTACTTAATCAAATCAATGAT 57.088 29.630 0.00 0.00 41.74 2.45
1570 1602 9.796180 TTATGTAGTCTTAGGATCTTACCTCTC 57.204 37.037 0.00 0.00 41.00 3.20
1571 1603 7.209340 TGTAGTCTTAGGATCTTACCTCTCA 57.791 40.000 0.00 0.00 41.00 3.27
1572 1604 7.817440 TGTAGTCTTAGGATCTTACCTCTCAT 58.183 38.462 0.00 0.00 41.00 2.90
1573 1605 8.946248 TGTAGTCTTAGGATCTTACCTCTCATA 58.054 37.037 0.00 0.00 41.00 2.15
1574 1606 9.969001 GTAGTCTTAGGATCTTACCTCTCATAT 57.031 37.037 0.00 0.00 41.00 1.78
1575 1607 8.877864 AGTCTTAGGATCTTACCTCTCATATG 57.122 38.462 0.00 0.00 41.00 1.78
1576 1608 8.674173 AGTCTTAGGATCTTACCTCTCATATGA 58.326 37.037 5.07 5.07 41.00 2.15
1577 1609 9.303116 GTCTTAGGATCTTACCTCTCATATGAA 57.697 37.037 6.90 0.00 41.00 2.57
1578 1610 9.883293 TCTTAGGATCTTACCTCTCATATGAAA 57.117 33.333 6.90 0.00 41.00 2.69
1581 1613 7.972301 AGGATCTTACCTCTCATATGAAAAGG 58.028 38.462 23.29 23.29 34.98 3.11
1582 1614 7.017056 AGGATCTTACCTCTCATATGAAAAGGG 59.983 40.741 26.30 18.42 34.98 3.95
1583 1615 6.500589 TCTTACCTCTCATATGAAAAGGGG 57.499 41.667 26.30 18.48 36.68 4.79
1584 1616 6.209774 TCTTACCTCTCATATGAAAAGGGGA 58.790 40.000 26.30 20.14 34.07 4.81
1585 1617 6.327626 TCTTACCTCTCATATGAAAAGGGGAG 59.672 42.308 26.30 22.76 34.07 4.30
1586 1618 3.718956 ACCTCTCATATGAAAAGGGGAGG 59.281 47.826 26.30 25.42 43.12 4.30
1587 1619 3.718956 CCTCTCATATGAAAAGGGGAGGT 59.281 47.826 20.62 0.00 31.87 3.85
1588 1620 4.907875 CCTCTCATATGAAAAGGGGAGGTA 59.092 45.833 20.62 0.00 31.87 3.08
1589 1621 5.369699 CCTCTCATATGAAAAGGGGAGGTAA 59.630 44.000 20.62 0.00 31.87 2.85
1590 1622 6.465035 CCTCTCATATGAAAAGGGGAGGTAAG 60.465 46.154 20.62 1.73 31.87 2.34
1591 1623 6.209774 TCTCATATGAAAAGGGGAGGTAAGA 58.790 40.000 6.90 0.00 0.00 2.10
1592 1624 6.327626 TCTCATATGAAAAGGGGAGGTAAGAG 59.672 42.308 6.90 0.00 0.00 2.85
1593 1625 5.369699 TCATATGAAAAGGGGAGGTAAGAGG 59.630 44.000 1.98 0.00 0.00 3.69
1594 1626 2.275466 TGAAAAGGGGAGGTAAGAGGG 58.725 52.381 0.00 0.00 0.00 4.30
1595 1627 2.157911 TGAAAAGGGGAGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
1596 1628 1.968278 AAAGGGGAGGTAAGAGGGAC 58.032 55.000 0.00 0.00 0.00 4.46
1597 1629 0.797579 AAGGGGAGGTAAGAGGGACA 59.202 55.000 0.00 0.00 0.00 4.02
1598 1630 0.797579 AGGGGAGGTAAGAGGGACAA 59.202 55.000 0.00 0.00 0.00 3.18
1599 1631 1.369983 AGGGGAGGTAAGAGGGACAAT 59.630 52.381 0.00 0.00 0.00 2.71
1600 1632 1.769465 GGGGAGGTAAGAGGGACAATC 59.231 57.143 0.00 0.00 0.00 2.67
1601 1633 2.478292 GGGAGGTAAGAGGGACAATCA 58.522 52.381 0.00 0.00 0.00 2.57
1602 1634 3.049344 GGGAGGTAAGAGGGACAATCAT 58.951 50.000 0.00 0.00 0.00 2.45
1603 1635 4.232091 GGGAGGTAAGAGGGACAATCATA 58.768 47.826 0.00 0.00 0.00 2.15
1604 1636 4.658901 GGGAGGTAAGAGGGACAATCATAA 59.341 45.833 0.00 0.00 0.00 1.90
1605 1637 5.132144 GGGAGGTAAGAGGGACAATCATAAA 59.868 44.000 0.00 0.00 0.00 1.40
1606 1638 6.353602 GGGAGGTAAGAGGGACAATCATAAAA 60.354 42.308 0.00 0.00 0.00 1.52
1607 1639 7.290813 GGAGGTAAGAGGGACAATCATAAAAT 58.709 38.462 0.00 0.00 0.00 1.82
1608 1640 7.780271 GGAGGTAAGAGGGACAATCATAAAATT 59.220 37.037 0.00 0.00 0.00 1.82
1609 1641 9.190317 GAGGTAAGAGGGACAATCATAAAATTT 57.810 33.333 0.00 0.00 0.00 1.82
1612 1644 6.225981 AGAGGGACAATCATAAAATTTGCC 57.774 37.500 0.00 0.00 0.00 4.52
1639 1671 9.313118 GGGGACTAATAATAAAGTTGCATTTTG 57.687 33.333 6.90 0.00 0.00 2.44
1647 1679 0.034337 AGTTGCATTTTGCCTGCCAG 59.966 50.000 0.00 0.00 44.23 4.85
1698 1775 6.078664 CCCTGATTATCTAACTCCACTAGGT 58.921 44.000 0.00 0.00 35.89 3.08
1716 1793 5.867716 ACTAGGTATAAAGCACTTGTTGTCG 59.132 40.000 0.00 0.00 0.00 4.35
1733 1810 0.881118 TCGCTTGGCTGACAATTTCC 59.119 50.000 0.00 0.00 38.65 3.13
1736 1813 0.109132 CTTGGCTGACAATTTCCGGC 60.109 55.000 0.00 0.00 38.65 6.13
1740 1817 1.508088 CTGACAATTTCCGGCCAGC 59.492 57.895 2.24 0.00 0.00 4.85
1741 1818 1.228398 TGACAATTTCCGGCCAGCA 60.228 52.632 2.24 0.00 0.00 4.41
1742 1819 1.243342 TGACAATTTCCGGCCAGCAG 61.243 55.000 2.24 0.00 0.00 4.24
1743 1820 0.960364 GACAATTTCCGGCCAGCAGA 60.960 55.000 2.24 0.00 0.00 4.26
1746 1823 2.843912 AATTTCCGGCCAGCAGAGGG 62.844 60.000 2.24 0.00 0.00 4.30
1756 1833 4.007457 GCAGAGGGCATGCTCAAA 57.993 55.556 22.09 0.00 43.97 2.69
1757 1834 1.509923 GCAGAGGGCATGCTCAAAC 59.490 57.895 22.09 10.75 43.97 2.93
1758 1835 1.798735 CAGAGGGCATGCTCAAACG 59.201 57.895 22.09 0.61 0.00 3.60
1759 1836 1.377725 AGAGGGCATGCTCAAACGG 60.378 57.895 22.09 0.00 0.00 4.44
1760 1837 3.056313 GAGGGCATGCTCAAACGGC 62.056 63.158 22.09 0.00 0.00 5.68
1761 1838 4.133796 GGGCATGCTCAAACGGCC 62.134 66.667 18.92 3.40 43.86 6.13
1762 1839 4.133796 GGCATGCTCAAACGGCCC 62.134 66.667 18.92 0.00 38.70 5.80
1763 1840 3.372730 GCATGCTCAAACGGCCCA 61.373 61.111 11.37 0.00 0.00 5.36
1764 1841 2.879907 CATGCTCAAACGGCCCAG 59.120 61.111 0.00 0.00 0.00 4.45
1765 1842 3.064324 ATGCTCAAACGGCCCAGC 61.064 61.111 0.00 0.00 0.00 4.85
1788 1865 2.747460 GGCGAGCAATGGCAGACA 60.747 61.111 0.00 0.00 44.61 3.41
1820 1898 3.671079 TGGTAAAGATGTATGGGGGCTA 58.329 45.455 0.00 0.00 0.00 3.93
1865 1965 1.068352 ACAAGCCTCTGGACCCCTTT 61.068 55.000 0.00 0.00 0.00 3.11
1938 2044 4.466370 TCCTCTTTTGAGCCTAAAGATCGA 59.534 41.667 10.44 0.00 44.93 3.59
1946 2052 8.561738 TTTGAGCCTAAAGATCGAAACTATTT 57.438 30.769 0.00 0.00 0.00 1.40
1950 2056 8.426881 AGCCTAAAGATCGAAACTATTTCTTC 57.573 34.615 0.00 0.00 37.52 2.87
1962 2068 9.952188 CGAAACTATTTCTTCTTTTCTTCCTTT 57.048 29.630 0.25 0.00 37.52 3.11
1985 2091 6.612247 TTTTCGATCAAACTATGTGTGTGT 57.388 33.333 0.00 0.00 35.43 3.72
1986 2092 5.590104 TTCGATCAAACTATGTGTGTGTG 57.410 39.130 0.00 0.00 35.43 3.82
1988 2094 4.447389 TCGATCAAACTATGTGTGTGTGTG 59.553 41.667 0.00 0.00 35.43 3.82
1991 2097 4.257731 TCAAACTATGTGTGTGTGTGTGT 58.742 39.130 0.00 0.00 35.43 3.72
1992 2098 4.094146 TCAAACTATGTGTGTGTGTGTGTG 59.906 41.667 0.00 0.00 35.43 3.82
1994 2100 2.935849 ACTATGTGTGTGTGTGTGTGTG 59.064 45.455 0.00 0.00 0.00 3.82
2000 2106 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2007 2113 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2008 2114 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2012 2118 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
2013 2119 1.374758 TGTGTGTGTGTGTGTGCGA 60.375 52.632 0.00 0.00 0.00 5.10
2019 2125 0.030773 GTGTGTGTGTGCGAGAGAGA 59.969 55.000 0.00 0.00 0.00 3.10
2025 2131 1.002544 TGTGTGCGAGAGAGAGAGAGA 59.997 52.381 0.00 0.00 0.00 3.10
2028 2134 2.205074 GTGCGAGAGAGAGAGAGAGAG 58.795 57.143 0.00 0.00 0.00 3.20
2029 2135 2.107366 TGCGAGAGAGAGAGAGAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
2030 2136 2.101415 TGCGAGAGAGAGAGAGAGAGAG 59.899 54.545 0.00 0.00 0.00 3.20
2031 2137 2.362397 GCGAGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
2032 2138 3.551863 GCGAGAGAGAGAGAGAGAGAGAG 60.552 56.522 0.00 0.00 0.00 3.20
2033 2139 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
2034 2140 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
2035 2141 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2036 2142 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2037 2143 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2038 2144 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2039 2145 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2040 2146 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2041 2147 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.947642 GACGGGCAAGGCGTATACG 60.948 63.158 20.87 20.87 43.27 3.06
56 57 1.712401 TTTACGGTGAAATCGACGGG 58.288 50.000 0.00 0.00 0.00 5.28
86 87 3.245122 TGGTGGAGTTTCAGATTTACCCC 60.245 47.826 0.00 0.00 0.00 4.95
101 102 2.698855 AATCGGAGAATGTGGTGGAG 57.301 50.000 0.00 0.00 43.58 3.86
147 148 0.389426 GCAGCTGCCCTTGTTGATTG 60.389 55.000 28.76 0.00 34.31 2.67
228 229 9.580916 CTTGTGTGTTGCGTATTTATGTATATC 57.419 33.333 0.00 0.00 0.00 1.63
242 243 3.129852 TCAAGTTTCTTGTGTGTTGCG 57.870 42.857 8.93 0.00 0.00 4.85
261 265 4.576463 TCTTCTGGCACTCTTGTTTTCTTC 59.424 41.667 0.00 0.00 0.00 2.87
272 276 4.067896 TGAATCAACTTCTTCTGGCACTC 58.932 43.478 0.00 0.00 34.75 3.51
292 296 1.341209 ACATGTCACGCTCTGAACTGA 59.659 47.619 0.00 0.00 0.00 3.41
296 305 2.352715 CCTGTACATGTCACGCTCTGAA 60.353 50.000 0.00 0.00 0.00 3.02
297 306 1.202348 CCTGTACATGTCACGCTCTGA 59.798 52.381 0.00 0.00 0.00 3.27
298 307 1.633561 CCTGTACATGTCACGCTCTG 58.366 55.000 0.00 0.00 0.00 3.35
299 308 0.532573 CCCTGTACATGTCACGCTCT 59.467 55.000 0.00 0.00 0.00 4.09
300 309 0.460284 CCCCTGTACATGTCACGCTC 60.460 60.000 0.00 0.00 0.00 5.03
303 312 0.895530 AGTCCCCTGTACATGTCACG 59.104 55.000 0.00 0.00 0.00 4.35
324 333 0.739112 GCTGCTCTACTGGTGAGTGC 60.739 60.000 0.00 0.00 33.21 4.40
354 367 0.038892 GGCAGTCGGAGAACGTGTTA 60.039 55.000 0.00 0.00 44.69 2.41
403 416 1.336755 GACAAAACCGGCACAATCACT 59.663 47.619 0.00 0.00 0.00 3.41
406 419 0.589223 TCGACAAAACCGGCACAATC 59.411 50.000 0.00 0.00 0.00 2.67
409 422 0.378962 CTTTCGACAAAACCGGCACA 59.621 50.000 0.00 0.00 0.00 4.57
415 428 1.724581 CGCGGCTTTCGACAAAACC 60.725 57.895 0.00 0.00 42.43 3.27
511 524 4.003788 CCGGTCGCCACCTTCTGT 62.004 66.667 0.00 0.00 41.17 3.41
535 548 3.114616 CCGTGCGCTCTGGTTCTG 61.115 66.667 9.73 0.00 0.00 3.02
568 581 4.673375 CAGCTGGCCCTGGTGCTT 62.673 66.667 5.57 0.00 33.03 3.91
571 584 2.115910 TTTCAGCTGGCCCTGGTG 59.884 61.111 15.13 13.07 33.64 4.17
598 611 3.482783 GTGAGAGCGCGCAACCTC 61.483 66.667 35.10 31.25 0.00 3.85
684 697 7.965718 TCATCATTTGGGTTTTCTTTTCTCAT 58.034 30.769 0.00 0.00 0.00 2.90
710 723 6.094742 TCAGATACTTGCACAAAAACAGTTGA 59.905 34.615 0.00 0.00 32.59 3.18
711 724 6.264832 TCAGATACTTGCACAAAAACAGTTG 58.735 36.000 0.00 0.00 34.52 3.16
712 725 6.449635 TCAGATACTTGCACAAAAACAGTT 57.550 33.333 0.00 0.00 0.00 3.16
724 737 7.387397 AGCTGCTAAATAGATTCAGATACTTGC 59.613 37.037 0.00 0.00 0.00 4.01
740 753 9.178758 GCCTGGTATATAATTAAGCTGCTAAAT 57.821 33.333 0.90 0.00 0.00 1.40
742 755 6.816640 CGCCTGGTATATAATTAAGCTGCTAA 59.183 38.462 0.90 0.00 0.00 3.09
750 763 9.300681 AGTACTACACGCCTGGTATATAATTAA 57.699 33.333 0.00 0.00 0.00 1.40
751 764 8.868522 AGTACTACACGCCTGGTATATAATTA 57.131 34.615 0.00 0.00 0.00 1.40
752 765 7.771927 AGTACTACACGCCTGGTATATAATT 57.228 36.000 0.00 0.00 0.00 1.40
753 766 7.309621 CCAAGTACTACACGCCTGGTATATAAT 60.310 40.741 0.00 0.00 0.00 1.28
766 779 1.076533 CCTGCGCCAAGTACTACACG 61.077 60.000 4.18 1.08 0.00 4.49
808 821 1.817099 GGCCCAGAACAGCAGATCG 60.817 63.158 0.00 0.00 0.00 3.69
889 902 4.016444 TGGTGATTTCAGGCTACATTTCC 58.984 43.478 0.00 0.00 0.00 3.13
941 954 8.894768 TTGTCCTGTCAAAAAGAAAAAGAAAA 57.105 26.923 0.00 0.00 0.00 2.29
942 955 8.894768 TTTGTCCTGTCAAAAAGAAAAAGAAA 57.105 26.923 0.00 0.00 34.90 2.52
957 985 4.576463 ACATTGTCTCAGTTTTGTCCTGTC 59.424 41.667 0.00 0.00 0.00 3.51
960 988 4.818546 CAGACATTGTCTCAGTTTTGTCCT 59.181 41.667 16.39 0.00 41.37 3.85
985 1013 4.541779 CTCAACATAGACGGTATGAGCTC 58.458 47.826 6.82 6.82 0.00 4.09
989 1017 3.383505 CACCCTCAACATAGACGGTATGA 59.616 47.826 12.56 0.00 0.00 2.15
991 1019 2.102588 GCACCCTCAACATAGACGGTAT 59.897 50.000 0.00 0.00 0.00 2.73
1137 1165 0.666274 TCAACACGGTGATCGCTGTC 60.666 55.000 17.88 0.00 43.89 3.51
1143 1171 1.798813 GTGAAGGTCAACACGGTGATC 59.201 52.381 16.29 2.04 0.00 2.92
1203 1231 2.672996 ATGGCACCACAGAACGCC 60.673 61.111 0.00 0.00 45.11 5.68
1277 1305 4.439305 TCCTTTTCCATGCGAGAAAATG 57.561 40.909 8.27 6.68 41.15 2.32
1280 1308 3.627577 GCTATCCTTTTCCATGCGAGAAA 59.372 43.478 0.00 0.00 0.00 2.52
1285 1313 1.334869 GGTGCTATCCTTTTCCATGCG 59.665 52.381 0.00 0.00 0.00 4.73
1286 1314 2.659428 AGGTGCTATCCTTTTCCATGC 58.341 47.619 0.00 0.00 33.52 4.06
1324 1352 2.193248 CAGAGGCCGGGGAATTCC 59.807 66.667 16.74 16.74 0.00 3.01
1325 1353 2.517166 GCAGAGGCCGGGGAATTC 60.517 66.667 2.18 0.00 0.00 2.17
1326 1354 2.631012 GATGCAGAGGCCGGGGAATT 62.631 60.000 2.18 0.00 40.13 2.17
1327 1355 3.099170 ATGCAGAGGCCGGGGAAT 61.099 61.111 2.18 0.00 40.13 3.01
1328 1356 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
1330 1358 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
1331 1359 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
1332 1360 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
1333 1361 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
1334 1362 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
1343 1371 2.158769 TGGCCGTATGCATCTTTCTGAT 60.159 45.455 0.19 0.00 43.89 2.90
1344 1372 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27
1345 1373 1.667236 TGGCCGTATGCATCTTTCTG 58.333 50.000 0.19 0.00 43.89 3.02
1346 1374 2.105477 AGATGGCCGTATGCATCTTTCT 59.895 45.455 0.19 0.00 43.89 2.52
1347 1375 2.498167 AGATGGCCGTATGCATCTTTC 58.502 47.619 0.19 0.00 43.89 2.62
1348 1376 2.645838 AGATGGCCGTATGCATCTTT 57.354 45.000 0.19 0.00 43.89 2.52
1349 1377 2.645838 AAGATGGCCGTATGCATCTT 57.354 45.000 0.19 2.26 43.89 2.40
1350 1378 3.988976 ATAAGATGGCCGTATGCATCT 57.011 42.857 0.19 0.00 43.89 2.90
1351 1379 5.163754 GGTTAATAAGATGGCCGTATGCATC 60.164 44.000 0.19 0.00 43.89 3.91
1352 1380 4.700213 GGTTAATAAGATGGCCGTATGCAT 59.300 41.667 3.79 3.79 43.89 3.96
1353 1381 4.069304 GGTTAATAAGATGGCCGTATGCA 58.931 43.478 0.00 0.00 43.89 3.96
1354 1382 4.069304 TGGTTAATAAGATGGCCGTATGC 58.931 43.478 0.00 0.00 40.16 3.14
1355 1383 6.627395 TTTGGTTAATAAGATGGCCGTATG 57.373 37.500 0.00 0.00 0.00 2.39
1356 1384 7.648039 TTTTTGGTTAATAAGATGGCCGTAT 57.352 32.000 0.00 0.00 0.00 3.06
1358 1386 5.986501 TTTTTGGTTAATAAGATGGCCGT 57.013 34.783 0.00 0.00 0.00 5.68
1377 1405 6.849588 CTGCAAGTTCTTAAAGGCATTTTT 57.150 33.333 0.00 0.00 0.00 1.94
1395 1423 6.878317 AGCAATACATCTCTTAGTACTGCAA 58.122 36.000 5.39 0.00 43.58 4.08
1404 1432 7.054124 CCCCACTAAAAGCAATACATCTCTTA 58.946 38.462 0.00 0.00 0.00 2.10
1424 1456 3.900966 AAATTAGTCGTACTCCCCCAC 57.099 47.619 0.00 0.00 0.00 4.61
1425 1457 5.248020 TGTTAAAATTAGTCGTACTCCCCCA 59.752 40.000 0.00 0.00 0.00 4.96
1426 1458 5.733676 TGTTAAAATTAGTCGTACTCCCCC 58.266 41.667 0.00 0.00 0.00 5.40
1427 1459 6.238293 GCATGTTAAAATTAGTCGTACTCCCC 60.238 42.308 0.00 0.00 0.00 4.81
1428 1460 6.537660 AGCATGTTAAAATTAGTCGTACTCCC 59.462 38.462 0.00 0.00 0.00 4.30
1429 1461 7.254353 GGAGCATGTTAAAATTAGTCGTACTCC 60.254 40.741 0.00 0.00 0.00 3.85
1430 1462 7.254353 GGGAGCATGTTAAAATTAGTCGTACTC 60.254 40.741 0.00 0.00 0.00 2.59
1431 1463 6.537660 GGGAGCATGTTAAAATTAGTCGTACT 59.462 38.462 0.00 0.00 0.00 2.73
1432 1464 6.537660 AGGGAGCATGTTAAAATTAGTCGTAC 59.462 38.462 0.00 0.00 0.00 3.67
1433 1465 6.646267 AGGGAGCATGTTAAAATTAGTCGTA 58.354 36.000 0.00 0.00 0.00 3.43
1434 1466 5.497474 AGGGAGCATGTTAAAATTAGTCGT 58.503 37.500 0.00 0.00 0.00 4.34
1435 1467 5.817816 AGAGGGAGCATGTTAAAATTAGTCG 59.182 40.000 0.00 0.00 0.00 4.18
1436 1468 7.631717 AAGAGGGAGCATGTTAAAATTAGTC 57.368 36.000 0.00 0.00 0.00 2.59
1437 1469 7.556635 GGTAAGAGGGAGCATGTTAAAATTAGT 59.443 37.037 0.00 0.00 0.00 2.24
1438 1470 7.775561 AGGTAAGAGGGAGCATGTTAAAATTAG 59.224 37.037 0.00 0.00 0.00 1.73
1439 1471 7.639378 AGGTAAGAGGGAGCATGTTAAAATTA 58.361 34.615 0.00 0.00 0.00 1.40
1440 1472 6.494059 AGGTAAGAGGGAGCATGTTAAAATT 58.506 36.000 0.00 0.00 0.00 1.82
1441 1473 6.079712 AGGTAAGAGGGAGCATGTTAAAAT 57.920 37.500 0.00 0.00 0.00 1.82
1442 1474 5.497474 GAGGTAAGAGGGAGCATGTTAAAA 58.503 41.667 0.00 0.00 0.00 1.52
1443 1475 4.080526 GGAGGTAAGAGGGAGCATGTTAAA 60.081 45.833 0.00 0.00 0.00 1.52
1444 1476 3.454812 GGAGGTAAGAGGGAGCATGTTAA 59.545 47.826 0.00 0.00 0.00 2.01
1445 1477 3.039011 GGAGGTAAGAGGGAGCATGTTA 58.961 50.000 0.00 0.00 0.00 2.41
1446 1478 1.840635 GGAGGTAAGAGGGAGCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
1447 1479 1.008938 AGGAGGTAAGAGGGAGCATGT 59.991 52.381 0.00 0.00 0.00 3.21
1448 1480 1.691434 GAGGAGGTAAGAGGGAGCATG 59.309 57.143 0.00 0.00 0.00 4.06
1449 1481 1.578215 AGAGGAGGTAAGAGGGAGCAT 59.422 52.381 0.00 0.00 0.00 3.79
1450 1482 1.011595 AGAGGAGGTAAGAGGGAGCA 58.988 55.000 0.00 0.00 0.00 4.26
1451 1483 2.168458 AAGAGGAGGTAAGAGGGAGC 57.832 55.000 0.00 0.00 0.00 4.70
1452 1484 4.081365 GTGAAAAGAGGAGGTAAGAGGGAG 60.081 50.000 0.00 0.00 0.00 4.30
1453 1485 3.838903 GTGAAAAGAGGAGGTAAGAGGGA 59.161 47.826 0.00 0.00 0.00 4.20
1454 1486 3.583086 TGTGAAAAGAGGAGGTAAGAGGG 59.417 47.826 0.00 0.00 0.00 4.30
1455 1487 4.891992 TGTGAAAAGAGGAGGTAAGAGG 57.108 45.455 0.00 0.00 0.00 3.69
1456 1488 4.633565 GCATGTGAAAAGAGGAGGTAAGAG 59.366 45.833 0.00 0.00 0.00 2.85
1457 1489 4.041567 TGCATGTGAAAAGAGGAGGTAAGA 59.958 41.667 0.00 0.00 0.00 2.10
1458 1490 4.326826 TGCATGTGAAAAGAGGAGGTAAG 58.673 43.478 0.00 0.00 0.00 2.34
1459 1491 4.365514 TGCATGTGAAAAGAGGAGGTAA 57.634 40.909 0.00 0.00 0.00 2.85
1460 1492 4.019411 TCATGCATGTGAAAAGAGGAGGTA 60.019 41.667 25.43 0.00 0.00 3.08
1461 1493 2.957402 TGCATGTGAAAAGAGGAGGT 57.043 45.000 0.00 0.00 0.00 3.85
1462 1494 3.349927 TCATGCATGTGAAAAGAGGAGG 58.650 45.455 25.43 0.00 0.00 4.30
1463 1495 3.377485 CCTCATGCATGTGAAAAGAGGAG 59.623 47.826 26.23 12.74 42.87 3.69
1464 1496 3.349927 CCTCATGCATGTGAAAAGAGGA 58.650 45.455 26.23 4.01 42.87 3.71
1465 1497 2.426024 CCCTCATGCATGTGAAAAGAGG 59.574 50.000 26.23 21.52 40.58 3.69
1466 1498 3.349927 TCCCTCATGCATGTGAAAAGAG 58.650 45.455 26.23 14.69 0.00 2.85
1467 1499 3.438216 TCCCTCATGCATGTGAAAAGA 57.562 42.857 26.23 15.34 0.00 2.52
1468 1500 5.591472 TCTTATCCCTCATGCATGTGAAAAG 59.409 40.000 26.23 20.70 0.00 2.27
1469 1501 5.508567 TCTTATCCCTCATGCATGTGAAAA 58.491 37.500 26.23 13.29 0.00 2.29
1470 1502 5.114764 TCTTATCCCTCATGCATGTGAAA 57.885 39.130 26.23 15.43 0.00 2.69
1471 1503 4.776435 TCTTATCCCTCATGCATGTGAA 57.224 40.909 26.23 15.74 0.00 3.18
1472 1504 4.776435 TTCTTATCCCTCATGCATGTGA 57.224 40.909 26.23 20.24 0.00 3.58
1473 1505 4.825634 ACATTCTTATCCCTCATGCATGTG 59.174 41.667 25.43 22.32 0.00 3.21
1474 1506 5.057843 ACATTCTTATCCCTCATGCATGT 57.942 39.130 25.43 9.20 0.00 3.21
1475 1507 6.938596 TCTTACATTCTTATCCCTCATGCATG 59.061 38.462 21.07 21.07 0.00 4.06
1476 1508 7.083062 TCTTACATTCTTATCCCTCATGCAT 57.917 36.000 0.00 0.00 0.00 3.96
1477 1509 6.499106 TCTTACATTCTTATCCCTCATGCA 57.501 37.500 0.00 0.00 0.00 3.96
1478 1510 7.992754 AATCTTACATTCTTATCCCTCATGC 57.007 36.000 0.00 0.00 0.00 4.06
1508 1540 9.911788 ATCATTGATTTGATTAAGTAGTGGTCT 57.088 29.630 0.00 0.00 32.38 3.85
1544 1576 9.796180 GAGAGGTAAGATCCTAAGACTACATAA 57.204 37.037 0.00 0.00 38.02 1.90
1545 1577 8.946248 TGAGAGGTAAGATCCTAAGACTACATA 58.054 37.037 0.00 0.00 38.02 2.29
1546 1578 7.817440 TGAGAGGTAAGATCCTAAGACTACAT 58.183 38.462 0.00 0.00 38.02 2.29
1547 1579 7.209340 TGAGAGGTAAGATCCTAAGACTACA 57.791 40.000 0.00 0.00 38.02 2.74
1548 1580 9.969001 ATATGAGAGGTAAGATCCTAAGACTAC 57.031 37.037 0.00 0.00 38.02 2.73
1549 1581 9.967451 CATATGAGAGGTAAGATCCTAAGACTA 57.033 37.037 0.00 0.00 38.02 2.59
1550 1582 8.674173 TCATATGAGAGGTAAGATCCTAAGACT 58.326 37.037 0.00 0.00 38.02 3.24
1551 1583 8.871629 TCATATGAGAGGTAAGATCCTAAGAC 57.128 38.462 0.00 0.00 38.02 3.01
1552 1584 9.883293 TTTCATATGAGAGGTAAGATCCTAAGA 57.117 33.333 5.39 0.00 38.02 2.10
1555 1587 9.094578 CCTTTTCATATGAGAGGTAAGATCCTA 57.905 37.037 20.93 0.00 38.02 2.94
1556 1588 7.017056 CCCTTTTCATATGAGAGGTAAGATCCT 59.983 40.741 24.44 0.00 40.97 3.24
1557 1589 7.164803 CCCTTTTCATATGAGAGGTAAGATCC 58.835 42.308 24.44 0.00 31.32 3.36
1558 1590 7.016661 TCCCCTTTTCATATGAGAGGTAAGATC 59.983 40.741 24.44 0.00 31.32 2.75
1559 1591 6.851836 TCCCCTTTTCATATGAGAGGTAAGAT 59.148 38.462 24.44 0.00 31.32 2.40
1560 1592 6.209774 TCCCCTTTTCATATGAGAGGTAAGA 58.790 40.000 24.44 18.31 31.32 2.10
1561 1593 6.465035 CCTCCCCTTTTCATATGAGAGGTAAG 60.465 46.154 24.44 20.95 35.88 2.34
1562 1594 5.369699 CCTCCCCTTTTCATATGAGAGGTAA 59.630 44.000 24.44 15.94 35.88 2.85
1563 1595 4.907875 CCTCCCCTTTTCATATGAGAGGTA 59.092 45.833 24.44 16.18 35.88 3.08
1564 1596 3.718956 CCTCCCCTTTTCATATGAGAGGT 59.281 47.826 24.44 0.00 35.88 3.85
1565 1597 3.718956 ACCTCCCCTTTTCATATGAGAGG 59.281 47.826 24.51 24.51 44.25 3.69
1566 1598 6.327626 TCTTACCTCCCCTTTTCATATGAGAG 59.672 42.308 5.39 7.81 0.00 3.20
1567 1599 6.209774 TCTTACCTCCCCTTTTCATATGAGA 58.790 40.000 5.39 0.00 0.00 3.27
1568 1600 6.465035 CCTCTTACCTCCCCTTTTCATATGAG 60.465 46.154 5.39 0.00 0.00 2.90
1569 1601 5.369699 CCTCTTACCTCCCCTTTTCATATGA 59.630 44.000 0.00 0.00 0.00 2.15
1570 1602 5.456763 CCCTCTTACCTCCCCTTTTCATATG 60.457 48.000 0.00 0.00 0.00 1.78
1571 1603 4.665483 CCCTCTTACCTCCCCTTTTCATAT 59.335 45.833 0.00 0.00 0.00 1.78
1572 1604 4.045022 CCCTCTTACCTCCCCTTTTCATA 58.955 47.826 0.00 0.00 0.00 2.15
1573 1605 2.853077 CCCTCTTACCTCCCCTTTTCAT 59.147 50.000 0.00 0.00 0.00 2.57
1574 1606 2.157911 TCCCTCTTACCTCCCCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
1575 1607 2.239150 GTCCCTCTTACCTCCCCTTTTC 59.761 54.545 0.00 0.00 0.00 2.29
1576 1608 2.276391 GTCCCTCTTACCTCCCCTTTT 58.724 52.381 0.00 0.00 0.00 2.27
1577 1609 1.153565 TGTCCCTCTTACCTCCCCTTT 59.846 52.381 0.00 0.00 0.00 3.11
1578 1610 0.797579 TGTCCCTCTTACCTCCCCTT 59.202 55.000 0.00 0.00 0.00 3.95
1579 1611 0.797579 TTGTCCCTCTTACCTCCCCT 59.202 55.000 0.00 0.00 0.00 4.79
1580 1612 1.769465 GATTGTCCCTCTTACCTCCCC 59.231 57.143 0.00 0.00 0.00 4.81
1581 1613 2.478292 TGATTGTCCCTCTTACCTCCC 58.522 52.381 0.00 0.00 0.00 4.30
1582 1614 5.888982 TTATGATTGTCCCTCTTACCTCC 57.111 43.478 0.00 0.00 0.00 4.30
1583 1615 8.753497 AATTTTATGATTGTCCCTCTTACCTC 57.247 34.615 0.00 0.00 0.00 3.85
1584 1616 8.971073 CAAATTTTATGATTGTCCCTCTTACCT 58.029 33.333 0.00 0.00 0.00 3.08
1585 1617 7.706607 GCAAATTTTATGATTGTCCCTCTTACC 59.293 37.037 0.00 0.00 0.00 2.85
1586 1618 7.706607 GGCAAATTTTATGATTGTCCCTCTTAC 59.293 37.037 0.00 0.00 0.00 2.34
1587 1619 7.416213 CGGCAAATTTTATGATTGTCCCTCTTA 60.416 37.037 0.00 0.00 0.00 2.10
1588 1620 6.627953 CGGCAAATTTTATGATTGTCCCTCTT 60.628 38.462 0.00 0.00 0.00 2.85
1589 1621 5.163519 CGGCAAATTTTATGATTGTCCCTCT 60.164 40.000 0.00 0.00 0.00 3.69
1590 1622 5.043248 CGGCAAATTTTATGATTGTCCCTC 58.957 41.667 0.00 0.00 0.00 4.30
1591 1623 4.141959 CCGGCAAATTTTATGATTGTCCCT 60.142 41.667 0.00 0.00 0.00 4.20
1592 1624 4.119136 CCGGCAAATTTTATGATTGTCCC 58.881 43.478 0.00 0.00 0.00 4.46
1593 1625 4.119136 CCCGGCAAATTTTATGATTGTCC 58.881 43.478 0.00 0.00 0.00 4.02
1594 1626 4.119136 CCCCGGCAAATTTTATGATTGTC 58.881 43.478 0.00 0.00 0.00 3.18
1595 1627 3.772025 TCCCCGGCAAATTTTATGATTGT 59.228 39.130 0.00 0.00 0.00 2.71
1596 1628 4.119136 GTCCCCGGCAAATTTTATGATTG 58.881 43.478 0.00 0.00 0.00 2.67
1597 1629 4.030216 AGTCCCCGGCAAATTTTATGATT 58.970 39.130 0.00 0.00 0.00 2.57
1598 1630 3.642141 AGTCCCCGGCAAATTTTATGAT 58.358 40.909 0.00 0.00 0.00 2.45
1599 1631 3.094484 AGTCCCCGGCAAATTTTATGA 57.906 42.857 0.00 0.00 0.00 2.15
1600 1632 4.993029 TTAGTCCCCGGCAAATTTTATG 57.007 40.909 0.00 0.00 0.00 1.90
1601 1633 7.849322 ATTATTAGTCCCCGGCAAATTTTAT 57.151 32.000 0.00 0.00 0.00 1.40
1602 1634 8.763984 TTATTATTAGTCCCCGGCAAATTTTA 57.236 30.769 0.00 0.00 0.00 1.52
1603 1635 7.663043 TTATTATTAGTCCCCGGCAAATTTT 57.337 32.000 0.00 0.00 0.00 1.82
1604 1636 7.343574 ACTTTATTATTAGTCCCCGGCAAATTT 59.656 33.333 0.00 0.00 0.00 1.82
1605 1637 6.837048 ACTTTATTATTAGTCCCCGGCAAATT 59.163 34.615 0.00 0.00 0.00 1.82
1606 1638 6.370453 ACTTTATTATTAGTCCCCGGCAAAT 58.630 36.000 0.00 0.00 0.00 2.32
1607 1639 5.757988 ACTTTATTATTAGTCCCCGGCAAA 58.242 37.500 0.00 0.00 0.00 3.68
1608 1640 5.376756 ACTTTATTATTAGTCCCCGGCAA 57.623 39.130 0.00 0.00 0.00 4.52
1609 1641 5.127491 CAACTTTATTATTAGTCCCCGGCA 58.873 41.667 0.00 0.00 0.00 5.69
1612 1644 6.877611 ATGCAACTTTATTATTAGTCCCCG 57.122 37.500 0.00 0.00 0.00 5.73
1639 1671 2.346541 GGAAAGAAGGCTGGCAGGC 61.347 63.158 31.61 31.61 41.73 4.85
1698 1775 4.083537 CCAAGCGACAACAAGTGCTTTATA 60.084 41.667 0.00 0.00 40.29 0.98
1716 1793 0.109132 CCGGAAATTGTCAGCCAAGC 60.109 55.000 0.00 0.00 36.25 4.01
1740 1817 1.651240 CCGTTTGAGCATGCCCTCTG 61.651 60.000 15.66 0.00 33.02 3.35
1741 1818 1.377725 CCGTTTGAGCATGCCCTCT 60.378 57.895 15.66 0.00 33.02 3.69
1742 1819 3.056313 GCCGTTTGAGCATGCCCTC 62.056 63.158 15.66 7.07 0.00 4.30
1743 1820 3.064324 GCCGTTTGAGCATGCCCT 61.064 61.111 15.66 0.00 0.00 5.19
1746 1823 3.346631 CTGGGCCGTTTGAGCATGC 62.347 63.158 10.51 10.51 0.00 4.06
1747 1824 2.879907 CTGGGCCGTTTGAGCATG 59.120 61.111 0.00 0.00 0.00 4.06
1748 1825 3.064324 GCTGGGCCGTTTGAGCAT 61.064 61.111 7.85 0.00 0.00 3.79
1765 1842 2.179018 CCATTGCTCGCCGTTTGG 59.821 61.111 0.00 0.00 38.77 3.28
1766 1843 2.504681 GCCATTGCTCGCCGTTTG 60.505 61.111 0.00 0.00 33.53 2.93
1767 1844 2.981560 CTGCCATTGCTCGCCGTTT 61.982 57.895 0.00 0.00 38.71 3.60
1768 1845 3.434319 CTGCCATTGCTCGCCGTT 61.434 61.111 0.00 0.00 38.71 4.44
1769 1846 4.393155 TCTGCCATTGCTCGCCGT 62.393 61.111 0.00 0.00 38.71 5.68
1770 1847 3.869272 GTCTGCCATTGCTCGCCG 61.869 66.667 0.00 0.00 38.71 6.46
1771 1848 1.865788 TTTGTCTGCCATTGCTCGCC 61.866 55.000 0.00 0.00 38.71 5.54
1772 1849 0.039256 TTTTGTCTGCCATTGCTCGC 60.039 50.000 0.00 0.00 38.71 5.03
1773 1850 2.420628 TTTTTGTCTGCCATTGCTCG 57.579 45.000 0.00 0.00 38.71 5.03
1797 1874 2.956333 GCCCCCATACATCTTTACCAAC 59.044 50.000 0.00 0.00 0.00 3.77
1820 1898 0.965866 TGGACGTGCACTAGCTAGCT 60.966 55.000 23.12 23.12 42.74 3.32
1865 1965 5.955959 TCTCATTAGAACCCACTTAGCAGTA 59.044 40.000 0.00 0.00 0.00 2.74
1917 2021 6.370166 AGTTTCGATCTTTAGGCTCAAAAGAG 59.630 38.462 15.51 5.89 43.98 2.85
1962 2068 6.037720 ACACACACACATAGTTTGATCGAAAA 59.962 34.615 0.00 0.00 32.28 2.29
1963 2069 5.525745 ACACACACACATAGTTTGATCGAAA 59.474 36.000 0.00 0.00 32.28 3.46
1964 2070 5.050431 CACACACACACATAGTTTGATCGAA 60.050 40.000 0.00 0.00 32.28 3.71
1966 2072 4.211164 ACACACACACACATAGTTTGATCG 59.789 41.667 0.00 0.00 32.28 3.69
1967 2073 5.007626 ACACACACACACACATAGTTTGATC 59.992 40.000 0.00 0.00 32.28 2.92
1968 2074 4.881273 ACACACACACACACATAGTTTGAT 59.119 37.500 0.00 0.00 32.28 2.57
1970 2076 4.142708 ACACACACACACACACATAGTTTG 60.143 41.667 0.00 0.00 34.10 2.93
1971 2077 4.006989 ACACACACACACACACATAGTTT 58.993 39.130 0.00 0.00 0.00 2.66
1972 2078 3.373748 CACACACACACACACACATAGTT 59.626 43.478 0.00 0.00 0.00 2.24
1977 2083 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1978 2084 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1979 2085 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1980 2086 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1983 2089 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1984 2090 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1985 2091 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1986 2092 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1988 2094 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1991 2097 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1992 2098 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1994 2100 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2000 2106 0.030773 TCTCTCTCGCACACACACAC 59.969 55.000 0.00 0.00 0.00 3.82
2007 2113 1.552792 TCTCTCTCTCTCTCTCGCACA 59.447 52.381 0.00 0.00 0.00 4.57
2008 2114 2.159099 TCTCTCTCTCTCTCTCTCGCAC 60.159 54.545 0.00 0.00 0.00 5.34
2012 2118 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2013 2119 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2019 2125 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2448 2554 5.593909 TCTCACAATCTCATTCCTCTCTCTC 59.406 44.000 0.00 0.00 0.00 3.20
2449 2555 5.360714 GTCTCACAATCTCATTCCTCTCTCT 59.639 44.000 0.00 0.00 0.00 3.10
2450 2556 5.451798 GGTCTCACAATCTCATTCCTCTCTC 60.452 48.000 0.00 0.00 0.00 3.20
2451 2557 4.405358 GGTCTCACAATCTCATTCCTCTCT 59.595 45.833 0.00 0.00 0.00 3.10
2452 2558 4.405358 AGGTCTCACAATCTCATTCCTCTC 59.595 45.833 0.00 0.00 0.00 3.20
2453 2559 4.360889 AGGTCTCACAATCTCATTCCTCT 58.639 43.478 0.00 0.00 0.00 3.69
2454 2560 4.751767 AGGTCTCACAATCTCATTCCTC 57.248 45.455 0.00 0.00 0.00 3.71
2460 2566 2.873245 GCTGCAAGGTCTCACAATCTCA 60.873 50.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.