Multiple sequence alignment - TraesCS7A01G418900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G418900 chr7A 100.000 6675 0 0 1 6675 610456150 610449476 0.000000e+00 12327.0
1 TraesCS7A01G418900 chr7A 82.353 153 19 8 3189 3339 627236815 627236961 7.030000e-25 126.0
2 TraesCS7A01G418900 chr7B 93.783 2863 76 32 3317 6097 568681921 568679079 0.000000e+00 4207.0
3 TraesCS7A01G418900 chr7B 86.933 1500 100 41 10 1462 568685395 568683945 0.000000e+00 1596.0
4 TraesCS7A01G418900 chr7B 87.018 778 52 29 1513 2267 568683953 568683202 0.000000e+00 832.0
5 TraesCS7A01G418900 chr7B 93.609 532 28 5 6098 6626 568679013 568678485 0.000000e+00 789.0
6 TraesCS7A01G418900 chr7B 86.064 409 26 12 2609 2998 568682591 568682195 1.730000e-110 411.0
7 TraesCS7A01G418900 chr7B 87.838 296 11 7 2267 2548 568683034 568682750 2.320000e-84 324.0
8 TraesCS7A01G418900 chr7B 96.392 194 6 1 2996 3188 568682118 568681925 1.080000e-82 318.0
9 TraesCS7A01G418900 chr7D 94.011 2104 69 14 3317 5377 530129536 530127447 0.000000e+00 3134.0
10 TraesCS7A01G418900 chr7D 90.274 2046 103 44 1 2017 530132792 530130814 0.000000e+00 2588.0
11 TraesCS7A01G418900 chr7D 95.659 1267 33 8 5380 6626 530127413 530126149 0.000000e+00 2015.0
12 TraesCS7A01G418900 chr7D 91.304 437 16 6 2126 2548 530130810 530130382 1.610000e-160 577.0
13 TraesCS7A01G418900 chr7D 85.819 409 30 15 2610 2995 530130216 530129813 6.230000e-110 409.0
14 TraesCS7A01G418900 chr7D 96.392 194 6 1 2996 3188 530129733 530129540 1.080000e-82 318.0
15 TraesCS7A01G418900 chr7D 93.793 145 7 2 3189 3332 234351350 234351207 4.050000e-52 217.0
16 TraesCS7A01G418900 chr7D 100.000 53 0 0 6623 6675 530126108 530126056 1.530000e-16 99.0
17 TraesCS7A01G418900 chr1D 98.507 134 2 0 3185 3318 43298890 43298757 3.110000e-58 237.0
18 TraesCS7A01G418900 chr6A 99.219 128 1 0 3188 3315 494467148 494467275 1.450000e-56 231.0
19 TraesCS7A01G418900 chr6A 99.213 127 1 0 3189 3315 542709348 542709474 5.210000e-56 230.0
20 TraesCS7A01G418900 chr6D 96.992 133 4 0 3185 3317 49271980 49272112 2.420000e-54 224.0
21 TraesCS7A01G418900 chr6D 95.105 143 6 1 3178 3319 272859366 272859224 2.420000e-54 224.0
22 TraesCS7A01G418900 chr6B 97.015 134 3 1 3183 3315 30348239 30348372 2.420000e-54 224.0
23 TraesCS7A01G418900 chr6B 84.568 162 20 5 3185 3344 67527384 67527542 8.960000e-34 156.0
24 TraesCS7A01G418900 chr3D 96.992 133 4 0 3187 3319 210622421 210622553 2.420000e-54 224.0
25 TraesCS7A01G418900 chr3D 95.070 142 5 2 3187 3326 610017730 610017589 8.710000e-54 222.0
26 TraesCS7A01G418900 chr2A 89.241 158 11 4 3186 3339 486500219 486500064 6.830000e-45 193.0
27 TraesCS7A01G418900 chr3B 89.103 156 13 4 3186 3337 412857109 412857264 2.460000e-44 191.0
28 TraesCS7A01G418900 chr3B 89.103 156 13 4 3189 3344 471484343 471484192 2.460000e-44 191.0
29 TraesCS7A01G418900 chr3B 77.143 140 30 2 51 188 694037874 694037735 5.550000e-11 80.5
30 TraesCS7A01G418900 chr5A 75.851 323 53 16 121 421 665891162 665891481 2.510000e-29 141.0
31 TraesCS7A01G418900 chr5A 82.036 167 23 7 3184 3346 478854329 478854492 1.170000e-27 135.0
32 TraesCS7A01G418900 chr4B 75.664 226 49 5 8 231 500109676 500109897 2.550000e-19 108.0
33 TraesCS7A01G418900 chr4A 74.274 241 57 4 8 246 60890002 60890239 5.510000e-16 97.1
34 TraesCS7A01G418900 chr5D 79.070 86 14 3 1 85 329437434 329437516 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G418900 chr7A 610449476 610456150 6674 True 12327.000000 12327 100.000000 1 6675 1 chr7A.!!$R1 6674
1 TraesCS7A01G418900 chr7B 568678485 568685395 6910 True 1211.000000 4207 90.233857 10 6626 7 chr7B.!!$R1 6616
2 TraesCS7A01G418900 chr7D 530126056 530132792 6736 True 1305.714286 3134 93.351286 1 6675 7 chr7D.!!$R2 6674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 289 0.106419 AGCTCCCGGGTTCAAACAAA 60.106 50.0 22.86 0.0 0.00 2.83 F
1351 1401 0.178938 TTGCCAGCTTTGGGAATGGA 60.179 50.0 0.00 0.0 34.30 3.41 F
3204 3673 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.0 0.00 4.12 F
3316 3785 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.0 0.00 0.0 0.00 2.73 F
4258 4752 0.320421 ACTGTGTCGGTATGTGCACC 60.320 55.0 15.69 0.0 35.04 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 1614 0.606401 AAATGTCTGAGCCACACGGG 60.606 55.000 0.0 0.0 40.85 5.28 R
3297 3766 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.0 0.0 0.00 3.28 R
4807 5329 1.423794 TTGGTCCCACTCCAACCCTC 61.424 60.000 0.0 0.0 39.62 4.30 R
4931 5453 2.368875 ACTGTGTTTGTCTAGTCCTGGG 59.631 50.000 0.0 0.0 0.00 4.45 R
6035 6627 1.412710 TCCGAGCAGACTTTGTCTTGT 59.587 47.619 0.0 0.0 41.37 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 0.622154 TTCTCCCCGCCCTTTCCATA 60.622 55.000 0.00 0.00 0.00 2.74
113 115 1.950909 CTAGCGGGTCTTTCGAGATCT 59.049 52.381 0.00 0.00 0.00 2.75
131 133 4.768968 AGATCTGGGTGATTTGGTTTTCAG 59.231 41.667 0.00 0.00 35.14 3.02
164 166 2.158561 ATTCGGCTGGCTTTTGTGGC 62.159 55.000 0.00 0.00 0.00 5.01
184 186 2.548480 GCCTTCAAAGTTTCTACACGCT 59.452 45.455 0.00 0.00 0.00 5.07
204 207 6.019479 CACGCTCTTATTGGTGTATTCTTCTC 60.019 42.308 0.00 0.00 0.00 2.87
206 209 5.463724 GCTCTTATTGGTGTATTCTTCTCCG 59.536 44.000 0.00 0.00 0.00 4.63
224 228 1.883021 GTGGCGGCTATTTGCTTGT 59.117 52.632 11.43 0.00 42.39 3.16
285 289 0.106419 AGCTCCCGGGTTCAAACAAA 60.106 50.000 22.86 0.00 0.00 2.83
294 298 3.739519 CGGGTTCAAACAAATTTGCTCCA 60.740 43.478 18.12 0.00 44.22 3.86
296 300 4.441792 GGTTCAAACAAATTTGCTCCACT 58.558 39.130 18.12 0.00 44.22 4.00
301 305 2.242043 ACAAATTTGCTCCACTGAGGG 58.758 47.619 18.12 0.00 39.14 4.30
307 311 2.452114 CTCCACTGAGGGGGAGGT 59.548 66.667 0.00 0.00 45.62 3.85
335 339 0.460109 AACATCGAGCTATGCGCACA 60.460 50.000 14.90 0.00 42.61 4.57
400 404 9.565213 CACTCTCAAGGATTTGAATGTAATTTC 57.435 33.333 0.00 0.00 42.48 2.17
438 442 3.118186 TGTGTAAGCACCTGTGGTACTTT 60.118 43.478 7.43 0.00 44.65 2.66
439 443 3.881089 GTGTAAGCACCTGTGGTACTTTT 59.119 43.478 7.43 0.00 35.98 2.27
523 536 2.200337 GGGGTCCAAGTTGGTGCAC 61.200 63.158 21.35 15.71 39.03 4.57
580 593 4.287781 TCGCCGTGGAAACGAGCA 62.288 61.111 0.00 0.00 34.64 4.26
609 622 5.186198 CCGGGAAAGTGTTATCAATTCTCT 58.814 41.667 0.00 0.00 30.42 3.10
870 901 5.940617 CCCCCATACAAGTCAGATCATAAA 58.059 41.667 0.00 0.00 0.00 1.40
935 970 8.065627 TCCTCTTCTCCCACTCTACAAATATAA 58.934 37.037 0.00 0.00 0.00 0.98
943 978 5.221864 CCACTCTACAAATATAACCCTCCCC 60.222 48.000 0.00 0.00 0.00 4.81
947 986 3.061369 ACAAATATAACCCTCCCCCTCC 58.939 50.000 0.00 0.00 0.00 4.30
948 987 2.378886 CAAATATAACCCTCCCCCTCCC 59.621 54.545 0.00 0.00 0.00 4.30
949 988 1.582884 ATATAACCCTCCCCCTCCCT 58.417 55.000 0.00 0.00 0.00 4.20
950 989 0.872449 TATAACCCTCCCCCTCCCTC 59.128 60.000 0.00 0.00 0.00 4.30
951 990 0.942040 ATAACCCTCCCCCTCCCTCT 60.942 60.000 0.00 0.00 0.00 3.69
952 991 1.600763 TAACCCTCCCCCTCCCTCTC 61.601 65.000 0.00 0.00 0.00 3.20
953 992 3.039526 CCCTCCCCCTCCCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
954 993 2.612251 CCTCCCCCTCCCTCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
955 994 2.018086 CCTCCCCCTCCCTCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
956 995 1.541672 CTCCCCCTCCCTCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
957 996 0.998945 CTCCCCCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
958 997 0.996762 TCCCCCTCCCTCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
959 998 0.998945 CCCCCTCCCTCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
960 999 0.478507 CCCCTCCCTCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
961 1000 1.221635 CCCTCCCTCTCTCTCTCTCA 58.778 60.000 0.00 0.00 0.00 3.27
962 1001 1.133792 CCCTCCCTCTCTCTCTCTCAC 60.134 61.905 0.00 0.00 0.00 3.51
963 1002 1.563879 CCTCCCTCTCTCTCTCTCACA 59.436 57.143 0.00 0.00 0.00 3.58
970 1009 3.555966 TCTCTCTCTCTCACACACACAA 58.444 45.455 0.00 0.00 0.00 3.33
1082 1130 2.281484 TTGCGTGGGTGGAAGCTC 60.281 61.111 0.00 0.00 0.00 4.09
1094 1142 0.873743 GGAAGCTCCGCGATGAAGAG 60.874 60.000 8.23 6.28 0.00 2.85
1235 1283 4.688419 GGCCACGACGACGACGAA 62.688 66.667 25.15 0.00 42.66 3.85
1275 1323 2.171635 GTTCGACAACCTGGCCATC 58.828 57.895 5.51 0.00 0.00 3.51
1288 1336 2.873525 GCCATCGGCTACCTCTCCC 61.874 68.421 0.00 0.00 46.69 4.30
1321 1369 1.664965 GCTTCTGGTTCGTGCTCGT 60.665 57.895 8.17 0.00 38.33 4.18
1322 1370 0.388134 GCTTCTGGTTCGTGCTCGTA 60.388 55.000 8.17 0.00 38.33 3.43
1323 1371 1.736032 GCTTCTGGTTCGTGCTCGTAT 60.736 52.381 8.17 0.00 38.33 3.06
1324 1372 2.479049 GCTTCTGGTTCGTGCTCGTATA 60.479 50.000 8.17 0.00 38.33 1.47
1325 1373 2.838386 TCTGGTTCGTGCTCGTATAC 57.162 50.000 8.17 5.38 38.33 1.47
1345 1395 2.234414 ACACATATTTGCCAGCTTTGGG 59.766 45.455 0.00 0.00 0.00 4.12
1347 1397 3.055963 CACATATTTGCCAGCTTTGGGAA 60.056 43.478 0.00 0.00 37.51 3.97
1348 1398 3.776417 ACATATTTGCCAGCTTTGGGAAT 59.224 39.130 0.00 0.00 39.03 3.01
1349 1399 2.773993 ATTTGCCAGCTTTGGGAATG 57.226 45.000 0.00 0.00 39.03 2.67
1350 1400 0.686224 TTTGCCAGCTTTGGGAATGG 59.314 50.000 0.00 0.00 39.03 3.16
1351 1401 0.178938 TTGCCAGCTTTGGGAATGGA 60.179 50.000 0.00 0.00 34.30 3.41
1352 1402 0.178938 TGCCAGCTTTGGGAATGGAA 60.179 50.000 0.00 0.00 34.60 3.53
1353 1403 1.197812 GCCAGCTTTGGGAATGGAAT 58.802 50.000 0.00 0.00 34.60 3.01
1354 1404 1.134610 GCCAGCTTTGGGAATGGAATG 60.135 52.381 0.00 0.00 34.60 2.67
1355 1405 2.459644 CCAGCTTTGGGAATGGAATGA 58.540 47.619 0.00 0.00 34.60 2.57
1421 1471 5.447010 GCTGCATGTGAAGAGACATAGTTTC 60.447 44.000 0.00 0.00 34.69 2.78
1481 1534 6.708949 TCATTAATGTTAACGGAGCCCTATTC 59.291 38.462 14.97 0.00 0.00 1.75
1491 1544 4.021016 ACGGAGCCCTATTCTGATGATAAC 60.021 45.833 0.00 0.00 0.00 1.89
1511 1564 2.203294 AAGCCGCCACGGTTTCTT 60.203 55.556 7.97 0.00 46.72 2.52
1512 1565 2.258726 AAGCCGCCACGGTTTCTTC 61.259 57.895 7.97 0.00 46.72 2.87
1513 1566 2.676163 AAGCCGCCACGGTTTCTTCT 62.676 55.000 7.97 0.00 46.72 2.85
1514 1567 4.058797 CCGCCACGGTTTCTTCTT 57.941 55.556 0.00 0.00 42.73 2.52
1515 1568 2.327228 CCGCCACGGTTTCTTCTTT 58.673 52.632 0.00 0.00 42.73 2.52
1516 1569 0.237498 CCGCCACGGTTTCTTCTTTC 59.763 55.000 0.00 0.00 42.73 2.62
1517 1570 1.226746 CGCCACGGTTTCTTCTTTCT 58.773 50.000 0.00 0.00 0.00 2.52
1561 1614 1.300233 CGACTAGGAAGATGGCCGC 60.300 63.158 0.00 0.00 0.00 6.53
1637 1693 6.450545 GTCTTTTTCTTTTTCAGATGGGAGG 58.549 40.000 0.00 0.00 0.00 4.30
1659 1715 4.325187 GGTGGTCGGATCTAGGGAGTATAT 60.325 50.000 0.00 0.00 0.00 0.86
1662 1718 6.888632 GTGGTCGGATCTAGGGAGTATATAAA 59.111 42.308 0.00 0.00 0.00 1.40
1663 1719 7.395489 GTGGTCGGATCTAGGGAGTATATAAAA 59.605 40.741 0.00 0.00 0.00 1.52
1861 1922 5.449177 GCTACTATGGTCCATTTTTGTCAGC 60.449 44.000 10.33 6.17 0.00 4.26
1984 2045 2.598192 CGGCAAATTTTCTACCATTGCG 59.402 45.455 0.00 0.00 45.47 4.85
2003 2087 9.196552 CCATTGCGGTATGTATATCTGTATATG 57.803 37.037 0.00 0.00 30.72 1.78
2004 2088 9.750125 CATTGCGGTATGTATATCTGTATATGT 57.250 33.333 0.00 0.00 30.72 2.29
2007 2091 9.398538 TGCGGTATGTATATCTGTATATGTACA 57.601 33.333 0.00 0.00 37.69 2.90
2083 2167 7.712639 CCATATGTGGTAGTATTATGCATCTCC 59.287 40.741 0.19 0.00 40.83 3.71
2117 2201 1.697082 GCTGGGTAGGACTTAGGCCC 61.697 65.000 0.00 0.00 39.73 5.80
2118 2202 1.003835 TGGGTAGGACTTAGGCCCC 59.996 63.158 0.00 0.00 38.57 5.80
2119 2203 1.003835 GGGTAGGACTTAGGCCCCA 59.996 63.158 0.00 0.00 33.40 4.96
2120 2204 1.343431 GGGTAGGACTTAGGCCCCAC 61.343 65.000 0.00 0.00 33.40 4.61
2121 2205 0.619543 GGTAGGACTTAGGCCCCACA 60.620 60.000 0.00 0.00 0.00 4.17
2122 2206 1.508256 GTAGGACTTAGGCCCCACAT 58.492 55.000 0.00 0.00 0.00 3.21
2123 2207 1.416772 GTAGGACTTAGGCCCCACATC 59.583 57.143 0.00 0.00 0.00 3.06
2124 2208 0.253160 AGGACTTAGGCCCCACATCA 60.253 55.000 0.00 0.00 0.00 3.07
2138 2222 2.953648 CCACATCACCACATGCATGTAT 59.046 45.455 30.92 19.54 39.39 2.29
2184 2268 4.336713 TCACTCGAGATTAGTGATGACAGG 59.663 45.833 21.68 0.00 46.38 4.00
2193 2277 8.324191 AGATTAGTGATGACAGGATAAAAGGA 57.676 34.615 0.00 0.00 0.00 3.36
2220 2304 9.573133 AAAATATCAGACGATCAAACCAATTTC 57.427 29.630 0.00 0.00 32.73 2.17
2256 2340 0.726452 CTTAGCTACGCGATCGAGCC 60.726 60.000 21.57 7.96 38.61 4.70
2364 2614 7.709269 TCGTATAACAATAAGAATGTGAGGC 57.291 36.000 0.00 0.00 0.00 4.70
2394 2644 3.064900 AGGAATCTTTCAGTGGTGAGC 57.935 47.619 0.00 0.00 32.98 4.26
2437 2687 6.922247 TCTTCTTCACACGATACTACCTAG 57.078 41.667 0.00 0.00 0.00 3.02
2459 2709 5.880901 AGTGGTAATGGAGAAGTCAAACAT 58.119 37.500 0.00 0.00 0.00 2.71
2460 2710 5.940470 AGTGGTAATGGAGAAGTCAAACATC 59.060 40.000 0.00 0.00 0.00 3.06
2461 2711 5.705441 GTGGTAATGGAGAAGTCAAACATCA 59.295 40.000 0.00 0.00 0.00 3.07
2462 2712 6.375455 GTGGTAATGGAGAAGTCAAACATCAT 59.625 38.462 0.00 0.00 0.00 2.45
2463 2713 6.375174 TGGTAATGGAGAAGTCAAACATCATG 59.625 38.462 0.00 0.00 0.00 3.07
2464 2714 6.375455 GGTAATGGAGAAGTCAAACATCATGT 59.625 38.462 0.00 0.00 0.00 3.21
2466 2716 7.621428 AATGGAGAAGTCAAACATCATGTAG 57.379 36.000 0.00 0.00 0.00 2.74
2467 2717 4.937620 TGGAGAAGTCAAACATCATGTAGC 59.062 41.667 0.00 0.00 0.00 3.58
2468 2718 4.333926 GGAGAAGTCAAACATCATGTAGCC 59.666 45.833 0.00 0.00 0.00 3.93
2469 2719 5.171339 AGAAGTCAAACATCATGTAGCCT 57.829 39.130 0.00 0.00 0.00 4.58
2477 2741 4.191804 ACATCATGTAGCCTCTAGGAGT 57.808 45.455 0.00 0.00 37.39 3.85
2548 2812 3.436704 TGGCACTGATCAGATTTTTCGAC 59.563 43.478 29.27 10.21 0.00 4.20
2549 2813 3.181506 GGCACTGATCAGATTTTTCGACC 60.182 47.826 29.27 11.61 0.00 4.79
2550 2814 3.181506 GCACTGATCAGATTTTTCGACCC 60.182 47.826 29.27 0.00 0.00 4.46
2551 2815 3.062639 CACTGATCAGATTTTTCGACCCG 59.937 47.826 29.27 0.00 0.00 5.28
2552 2816 3.056107 ACTGATCAGATTTTTCGACCCGA 60.056 43.478 29.27 0.00 0.00 5.14
2553 2817 3.932710 CTGATCAGATTTTTCGACCCGAA 59.067 43.478 18.34 0.00 44.28 4.30
2555 2819 4.941263 TGATCAGATTTTTCGACCCGAATT 59.059 37.500 2.53 0.00 45.28 2.17
2556 2820 6.110033 TGATCAGATTTTTCGACCCGAATTA 58.890 36.000 2.53 0.00 45.28 1.40
2557 2821 5.789710 TCAGATTTTTCGACCCGAATTAC 57.210 39.130 2.53 0.00 45.28 1.89
2559 2823 5.878116 TCAGATTTTTCGACCCGAATTACAT 59.122 36.000 2.53 0.00 45.28 2.29
2560 2824 6.036735 TCAGATTTTTCGACCCGAATTACATC 59.963 38.462 2.53 3.41 45.28 3.06
2561 2825 4.950434 TTTTTCGACCCGAATTACATCC 57.050 40.909 2.53 0.00 45.28 3.51
2566 2901 2.029649 CGACCCGAATTACATCCCGTAT 60.030 50.000 0.00 0.00 0.00 3.06
2586 2921 3.880047 TCTATGACGTACCCCTGTTTG 57.120 47.619 0.00 0.00 0.00 2.93
2587 2922 3.433343 TCTATGACGTACCCCTGTTTGA 58.567 45.455 0.00 0.00 0.00 2.69
2593 2928 5.374921 TGACGTACCCCTGTTTGATTTTTA 58.625 37.500 0.00 0.00 0.00 1.52
2594 2929 6.005198 TGACGTACCCCTGTTTGATTTTTAT 58.995 36.000 0.00 0.00 0.00 1.40
2595 2930 7.166851 TGACGTACCCCTGTTTGATTTTTATA 58.833 34.615 0.00 0.00 0.00 0.98
2596 2931 7.830201 TGACGTACCCCTGTTTGATTTTTATAT 59.170 33.333 0.00 0.00 0.00 0.86
2597 2932 8.584063 ACGTACCCCTGTTTGATTTTTATATT 57.416 30.769 0.00 0.00 0.00 1.28
2598 2933 9.027202 ACGTACCCCTGTTTGATTTTTATATTT 57.973 29.630 0.00 0.00 0.00 1.40
2629 2996 5.319232 CTCTAGACTAGAGTAAAGCGTCG 57.681 47.826 25.57 3.16 45.66 5.12
2632 2999 2.419324 AGACTAGAGTAAAGCGTCGGTG 59.581 50.000 0.00 0.00 0.00 4.94
2638 3005 2.913590 GAGTAAAGCGTCGGTGTTAGTC 59.086 50.000 0.00 7.81 0.00 2.59
2648 3019 1.526887 CGGTGTTAGTCTGCTGTTGTG 59.473 52.381 0.00 0.00 0.00 3.33
2666 3037 7.622256 GCTGTTGTGCACTATAGTTTTCTACAG 60.622 40.741 21.84 22.43 35.02 2.74
2669 3040 9.199982 GTTGTGCACTATAGTTTTCTACAGTAA 57.800 33.333 19.41 0.00 37.98 2.24
2670 3041 9.938280 TTGTGCACTATAGTTTTCTACAGTAAT 57.062 29.630 19.41 0.00 37.98 1.89
2719 3090 1.143684 AGGATGGTCAACACTTGCTGT 59.856 47.619 0.00 0.00 32.89 4.40
2723 3094 0.947244 GGTCAACACTTGCTGTCTGG 59.053 55.000 0.00 0.00 30.29 3.86
2733 3104 0.983467 TGCTGTCTGGCCTGAACATA 59.017 50.000 14.68 4.98 0.00 2.29
2734 3105 1.561076 TGCTGTCTGGCCTGAACATAT 59.439 47.619 14.68 0.00 0.00 1.78
2735 3106 2.216898 GCTGTCTGGCCTGAACATATC 58.783 52.381 14.68 1.28 0.00 1.63
2736 3107 2.420547 GCTGTCTGGCCTGAACATATCA 60.421 50.000 14.68 6.08 36.38 2.15
2738 3109 3.812262 TGTCTGGCCTGAACATATCATG 58.188 45.455 14.68 0.00 37.44 3.07
2797 3175 2.039084 CCAAGGATTAATAGAGGCCGCT 59.961 50.000 15.29 15.29 0.00 5.52
2801 3179 2.417719 GATTAATAGAGGCCGCTGTGG 58.582 52.381 20.53 2.05 42.50 4.17
2830 3208 1.135257 AGAATCTTCAGGCTCGACACG 60.135 52.381 0.00 0.00 0.00 4.49
2849 3227 4.988598 AGTGCGAGGTTGTGGCCG 62.989 66.667 0.00 0.00 0.00 6.13
2901 3279 1.136363 CGTCACAATGGCAAGTACACG 60.136 52.381 0.00 2.19 0.00 4.49
2927 3305 4.101430 CCAGCCCCATGCATAATTAACTTT 59.899 41.667 0.00 0.00 44.83 2.66
2932 3310 8.585018 AGCCCCATGCATAATTAACTTTATAAC 58.415 33.333 0.00 0.00 44.83 1.89
2933 3311 7.817478 GCCCCATGCATAATTAACTTTATAACC 59.183 37.037 0.00 0.00 40.77 2.85
2952 3337 2.224066 ACCGTATTCAGCAGGCTATGTC 60.224 50.000 0.00 0.00 0.00 3.06
2965 3350 1.210478 GCTATGTCATCCCACCAGTGT 59.790 52.381 0.00 0.00 0.00 3.55
2975 3364 3.909732 TCCCACCAGTGTTTTTCTCAAT 58.090 40.909 0.00 0.00 0.00 2.57
3034 3503 3.636764 ACCTGGATTTGGTTTGACAGAAC 59.363 43.478 0.00 0.00 33.34 3.01
3065 3534 3.216800 GCAGATAAAGGTGATGATGCCA 58.783 45.455 0.00 0.00 0.00 4.92
3166 3635 9.400638 GGTACTATATCAACAGATTTTCTCTCG 57.599 37.037 0.00 0.00 29.16 4.04
3190 3659 4.002982 TGACATGTTCTTGCTCCATGTAC 58.997 43.478 0.00 0.00 46.70 2.90
3192 3661 4.256920 ACATGTTCTTGCTCCATGTACTC 58.743 43.478 2.88 0.00 45.36 2.59
3193 3662 3.334583 TGTTCTTGCTCCATGTACTCC 57.665 47.619 0.00 0.00 0.00 3.85
3194 3663 2.027192 TGTTCTTGCTCCATGTACTCCC 60.027 50.000 0.00 0.00 0.00 4.30
3196 3665 2.111384 TCTTGCTCCATGTACTCCCTC 58.889 52.381 0.00 0.00 0.00 4.30
3197 3666 1.139853 CTTGCTCCATGTACTCCCTCC 59.860 57.143 0.00 0.00 0.00 4.30
3199 3668 1.043673 GCTCCATGTACTCCCTCCGT 61.044 60.000 0.00 0.00 0.00 4.69
3200 3669 1.033574 CTCCATGTACTCCCTCCGTC 58.966 60.000 0.00 0.00 0.00 4.79
3201 3670 0.396695 TCCATGTACTCCCTCCGTCC 60.397 60.000 0.00 0.00 0.00 4.79
3202 3671 1.400530 CCATGTACTCCCTCCGTCCC 61.401 65.000 0.00 0.00 0.00 4.46
3203 3672 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
3204 3673 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3205 3674 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3206 3675 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3207 3676 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3208 3677 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3209 3678 2.271777 ACTCCCTCCGTCCCAAAATTA 58.728 47.619 0.00 0.00 0.00 1.40
3210 3679 2.850568 ACTCCCTCCGTCCCAAAATTAT 59.149 45.455 0.00 0.00 0.00 1.28
3211 3680 3.268595 ACTCCCTCCGTCCCAAAATTATT 59.731 43.478 0.00 0.00 0.00 1.40
3212 3681 3.626930 TCCCTCCGTCCCAAAATTATTG 58.373 45.455 0.00 0.00 0.00 1.90
3213 3682 3.010808 TCCCTCCGTCCCAAAATTATTGT 59.989 43.478 0.00 0.00 0.00 2.71
3214 3683 3.380320 CCCTCCGTCCCAAAATTATTGTC 59.620 47.826 0.00 0.00 0.00 3.18
3215 3684 4.270008 CCTCCGTCCCAAAATTATTGTCT 58.730 43.478 0.00 0.00 0.00 3.41
3216 3685 4.705023 CCTCCGTCCCAAAATTATTGTCTT 59.295 41.667 0.00 0.00 0.00 3.01
3217 3686 5.883673 CCTCCGTCCCAAAATTATTGTCTTA 59.116 40.000 0.00 0.00 0.00 2.10
3218 3687 6.038271 CCTCCGTCCCAAAATTATTGTCTTAG 59.962 42.308 0.00 0.00 0.00 2.18
3219 3688 6.713276 TCCGTCCCAAAATTATTGTCTTAGA 58.287 36.000 0.00 0.00 0.00 2.10
3220 3689 7.343357 TCCGTCCCAAAATTATTGTCTTAGAT 58.657 34.615 0.00 0.00 0.00 1.98
3221 3690 7.832187 TCCGTCCCAAAATTATTGTCTTAGATT 59.168 33.333 0.00 0.00 0.00 2.40
3222 3691 8.466798 CCGTCCCAAAATTATTGTCTTAGATTT 58.533 33.333 0.00 0.00 0.00 2.17
3223 3692 9.289303 CGTCCCAAAATTATTGTCTTAGATTTG 57.711 33.333 0.00 0.00 0.00 2.32
3269 3738 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3270 3739 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3271 3740 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3272 3741 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3273 3742 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3289 3758 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3290 3759 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3291 3760 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3292 3761 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3293 3762 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3294 3763 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3302 3771 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3303 3772 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3304 3773 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3305 3774 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3306 3775 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3307 3776 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3308 3777 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3309 3778 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3310 3779 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3311 3780 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3312 3781 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3313 3782 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3314 3783 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3315 3784 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
3316 3785 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
3317 3786 1.002069 TTGGGACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
3318 3787 1.002069 TGGGACGGAGGGAGTAGTAA 58.998 55.000 0.00 0.00 0.00 2.24
3319 3788 1.358787 TGGGACGGAGGGAGTAGTAAA 59.641 52.381 0.00 0.00 0.00 2.01
3320 3789 2.023695 TGGGACGGAGGGAGTAGTAAAT 60.024 50.000 0.00 0.00 0.00 1.40
3321 3790 3.205056 TGGGACGGAGGGAGTAGTAAATA 59.795 47.826 0.00 0.00 0.00 1.40
3322 3791 4.140853 TGGGACGGAGGGAGTAGTAAATAT 60.141 45.833 0.00 0.00 0.00 1.28
3323 3792 4.220163 GGGACGGAGGGAGTAGTAAATATG 59.780 50.000 0.00 0.00 0.00 1.78
3324 3793 4.831710 GGACGGAGGGAGTAGTAAATATGT 59.168 45.833 0.00 0.00 0.00 2.29
3325 3794 6.006449 GGACGGAGGGAGTAGTAAATATGTA 58.994 44.000 0.00 0.00 0.00 2.29
3328 3797 9.236006 GACGGAGGGAGTAGTAAATATGTAATA 57.764 37.037 0.00 0.00 0.00 0.98
3360 3829 5.850046 AATATAAGTAGCCTGCCCTCAAT 57.150 39.130 0.00 0.00 0.00 2.57
3472 3941 8.986477 AGTTGATAAATATTGCAAAAGTGGTC 57.014 30.769 1.71 0.00 0.00 4.02
3658 4145 2.456577 ACATCCCCAAATGCAGGTAAC 58.543 47.619 0.00 0.00 0.00 2.50
3741 4228 9.311916 CAAGAAAACAAATTGTGGAATGAGTTA 57.688 29.630 0.00 0.00 0.00 2.24
3794 4281 0.759959 TGGTCCAAACGGTTGCTCTA 59.240 50.000 7.95 0.00 33.01 2.43
4175 4669 5.048782 GCAGACATACCAACAAATCTTGACA 60.049 40.000 0.00 0.00 0.00 3.58
4192 4686 6.108687 TCTTGACATAAGTGGTGCTTATCTG 58.891 40.000 0.00 0.00 45.77 2.90
4258 4752 0.320421 ACTGTGTCGGTATGTGCACC 60.320 55.000 15.69 0.00 35.04 5.01
4370 4864 2.891580 TCCACGATAGGCTATCCTGAAC 59.108 50.000 25.62 6.78 44.08 3.18
4382 4876 6.784969 AGGCTATCCTGAACAGTGAGTATATT 59.215 38.462 0.00 0.00 42.34 1.28
4511 5014 9.388506 AGATATTGAAACCTGAAAGTGTATCTG 57.611 33.333 0.00 0.00 0.00 2.90
4931 5453 4.819630 TGTCTATTCCAACTGTTCCACAAC 59.180 41.667 0.00 0.00 0.00 3.32
5094 5624 8.901793 TGTATATTTCAGCTGCAACAATCATTA 58.098 29.630 9.47 0.00 0.00 1.90
5108 5638 9.884465 GCAACAATCATTATTTCTAGGTCATAC 57.116 33.333 0.00 0.00 0.00 2.39
5302 5832 4.566004 TCCTGTATATTACAATGGAGCGC 58.434 43.478 0.00 0.00 38.38 5.92
5392 5953 6.478512 TTTGGAATAAGTTCAAACAAGCCT 57.521 33.333 0.00 0.00 36.01 4.58
5849 6434 2.286872 AGATGAAATGAAGAGCAGCGG 58.713 47.619 0.00 0.00 0.00 5.52
5988 6580 1.274167 GTCCACATCAAGTACGGACCA 59.726 52.381 0.00 0.00 37.35 4.02
6035 6627 6.928979 TCGTTGGTTCAATCTTTGTAAGAA 57.071 33.333 0.00 0.00 41.63 2.52
6070 6662 2.479275 GCTCGGACTGTGAAGGTTAAAC 59.521 50.000 0.00 0.00 0.00 2.01
6125 6784 1.924731 AGACGAGACAATCCAGGACA 58.075 50.000 0.00 0.00 0.00 4.02
6357 7016 9.771534 GAATCTATTACAATTCTCAGCTAAGGT 57.228 33.333 0.00 0.00 0.00 3.50
6483 7145 6.109156 TGTTAGAGGCTTTATGTGAAGACA 57.891 37.500 0.00 0.00 37.11 3.41
6555 7218 1.078567 CTTGCAGGACTCAGAGCCC 60.079 63.158 0.00 0.00 0.00 5.19
6563 7226 0.458716 GACTCAGAGCCCTGCGTTAC 60.459 60.000 0.00 0.00 38.36 2.50
6584 7247 0.747255 GCGATGGAAGAGCCTAGTCA 59.253 55.000 0.00 0.00 37.63 3.41
6586 7249 1.751351 CGATGGAAGAGCCTAGTCACA 59.249 52.381 0.00 0.00 37.63 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.104485 GGGGAGAACATTATTCCTACACTGT 60.104 44.000 0.00 0.00 0.00 3.55
42 44 4.284550 AGCACACCAACGGGGCAT 62.285 61.111 0.00 0.00 42.05 4.40
113 115 2.697751 CCACTGAAAACCAAATCACCCA 59.302 45.455 0.00 0.00 0.00 4.51
164 166 4.058817 AGAGCGTGTAGAAACTTTGAAGG 58.941 43.478 0.00 0.00 0.00 3.46
184 186 6.338146 CACGGAGAAGAATACACCAATAAGA 58.662 40.000 0.00 0.00 0.00 2.10
214 217 3.796717 CGACTGCGATCTACAAGCAAATA 59.203 43.478 0.00 0.00 40.63 1.40
285 289 0.846427 TCCCCCTCAGTGGAGCAAAT 60.846 55.000 0.00 0.00 39.96 2.32
294 298 2.452114 CCAGACCTCCCCCTCAGT 59.548 66.667 0.00 0.00 0.00 3.41
296 300 2.122729 CACCAGACCTCCCCCTCA 59.877 66.667 0.00 0.00 0.00 3.86
301 305 2.034221 GTTGCCACCAGACCTCCC 59.966 66.667 0.00 0.00 0.00 4.30
307 311 1.375908 GCTCGATGTTGCCACCAGA 60.376 57.895 0.00 0.00 0.00 3.86
348 352 0.740868 TCTTCTTCCGCCTGCATTCG 60.741 55.000 0.00 0.00 0.00 3.34
350 354 0.326264 AGTCTTCTTCCGCCTGCATT 59.674 50.000 0.00 0.00 0.00 3.56
400 404 6.092748 GCTTACACACCCATACAGAAAAATG 58.907 40.000 0.00 0.00 0.00 2.32
460 472 6.903883 TCGTATATGCAGGTTTTCTTCTTC 57.096 37.500 0.00 0.00 0.00 2.87
463 475 7.472543 ACATTTCGTATATGCAGGTTTTCTTC 58.527 34.615 0.00 0.00 0.00 2.87
466 478 8.609176 TCTAACATTTCGTATATGCAGGTTTTC 58.391 33.333 0.00 0.00 0.00 2.29
467 479 8.500753 TCTAACATTTCGTATATGCAGGTTTT 57.499 30.769 0.00 0.00 0.00 2.43
468 480 8.500753 TTCTAACATTTCGTATATGCAGGTTT 57.499 30.769 0.00 0.00 0.00 3.27
469 481 8.677148 ATTCTAACATTTCGTATATGCAGGTT 57.323 30.769 0.00 0.00 0.00 3.50
470 482 8.559536 CAATTCTAACATTTCGTATATGCAGGT 58.440 33.333 0.00 0.00 0.00 4.00
471 483 8.017373 CCAATTCTAACATTTCGTATATGCAGG 58.983 37.037 0.00 0.00 0.00 4.85
472 484 8.559536 ACCAATTCTAACATTTCGTATATGCAG 58.440 33.333 0.00 0.00 0.00 4.41
523 536 4.856487 CGTGTATGCTGGTGTTTAAATTGG 59.144 41.667 0.00 0.00 0.00 3.16
559 572 2.474266 CGTTTCCACGGCGACATG 59.526 61.111 16.62 0.23 43.16 3.21
580 593 0.475044 TAACACTTTCCCGGGCACTT 59.525 50.000 18.49 3.24 0.00 3.16
636 649 3.541242 TCCATGGACATGAGGGTTTTT 57.459 42.857 11.44 0.00 41.20 1.94
637 650 3.270433 AGATCCATGGACATGAGGGTTTT 59.730 43.478 18.99 0.00 41.20 2.43
638 651 2.854967 AGATCCATGGACATGAGGGTTT 59.145 45.455 18.99 0.00 41.20 3.27
639 652 2.496297 AGATCCATGGACATGAGGGTT 58.504 47.619 18.99 0.00 41.20 4.11
640 653 2.203120 AGATCCATGGACATGAGGGT 57.797 50.000 18.99 0.00 41.20 4.34
641 654 3.589951 AAAGATCCATGGACATGAGGG 57.410 47.619 18.99 0.00 41.20 4.30
642 655 3.562973 CGAAAAGATCCATGGACATGAGG 59.437 47.826 18.99 0.02 41.20 3.86
935 970 3.369388 GAGAGGGAGGGGGAGGGT 61.369 72.222 0.00 0.00 0.00 4.34
943 978 1.563879 TGTGAGAGAGAGAGAGGGAGG 59.436 57.143 0.00 0.00 0.00 4.30
947 986 2.487762 GTGTGTGTGAGAGAGAGAGAGG 59.512 54.545 0.00 0.00 0.00 3.69
948 987 3.145286 TGTGTGTGTGAGAGAGAGAGAG 58.855 50.000 0.00 0.00 0.00 3.20
949 988 3.214696 TGTGTGTGTGAGAGAGAGAGA 57.785 47.619 0.00 0.00 0.00 3.10
950 989 3.998099 TTGTGTGTGTGAGAGAGAGAG 57.002 47.619 0.00 0.00 0.00 3.20
951 990 3.447229 TGTTTGTGTGTGTGAGAGAGAGA 59.553 43.478 0.00 0.00 0.00 3.10
952 991 3.553511 GTGTTTGTGTGTGTGAGAGAGAG 59.446 47.826 0.00 0.00 0.00 3.20
953 992 3.056179 TGTGTTTGTGTGTGTGAGAGAGA 60.056 43.478 0.00 0.00 0.00 3.10
954 993 3.062639 GTGTGTTTGTGTGTGTGAGAGAG 59.937 47.826 0.00 0.00 0.00 3.20
955 994 3.000041 GTGTGTTTGTGTGTGTGAGAGA 59.000 45.455 0.00 0.00 0.00 3.10
956 995 3.002791 AGTGTGTTTGTGTGTGTGAGAG 58.997 45.455 0.00 0.00 0.00 3.20
957 996 3.000041 GAGTGTGTTTGTGTGTGTGAGA 59.000 45.455 0.00 0.00 0.00 3.27
958 997 2.741517 TGAGTGTGTTTGTGTGTGTGAG 59.258 45.455 0.00 0.00 0.00 3.51
959 998 2.772287 TGAGTGTGTTTGTGTGTGTGA 58.228 42.857 0.00 0.00 0.00 3.58
960 999 3.763097 ATGAGTGTGTTTGTGTGTGTG 57.237 42.857 0.00 0.00 0.00 3.82
961 1000 3.312421 GCTATGAGTGTGTTTGTGTGTGT 59.688 43.478 0.00 0.00 0.00 3.72
962 1001 3.561310 AGCTATGAGTGTGTTTGTGTGTG 59.439 43.478 0.00 0.00 0.00 3.82
963 1002 3.808728 AGCTATGAGTGTGTTTGTGTGT 58.191 40.909 0.00 0.00 0.00 3.72
970 1009 3.118956 GCCTGTCTAGCTATGAGTGTGTT 60.119 47.826 0.00 0.00 0.00 3.32
1062 1101 3.365265 CTTCCACCCACGCAAGGC 61.365 66.667 0.00 0.00 46.39 4.35
1065 1104 2.281484 GAGCTTCCACCCACGCAA 60.281 61.111 0.00 0.00 0.00 4.85
1082 1130 0.318275 GTAGCTCCTCTTCATCGCGG 60.318 60.000 6.13 0.00 0.00 6.46
1085 1133 1.671328 TCACGTAGCTCCTCTTCATCG 59.329 52.381 0.00 0.00 0.00 3.84
1088 1136 1.004394 TCCTCACGTAGCTCCTCTTCA 59.996 52.381 0.00 0.00 0.00 3.02
1094 1142 0.955905 GATCCTCCTCACGTAGCTCC 59.044 60.000 0.00 0.00 0.00 4.70
1275 1323 2.056223 TTTCCGGGAGAGGTAGCCG 61.056 63.158 0.00 0.00 0.00 5.52
1288 1336 3.058639 CCAGAAGCTTCTTGAAGTTTCCG 60.059 47.826 26.44 19.29 39.76 4.30
1321 1369 5.301551 CCCAAAGCTGGCAAATATGTGTATA 59.698 40.000 0.00 0.00 41.99 1.47
1322 1370 4.099881 CCCAAAGCTGGCAAATATGTGTAT 59.900 41.667 0.00 0.00 41.99 2.29
1323 1371 3.446873 CCCAAAGCTGGCAAATATGTGTA 59.553 43.478 0.00 0.00 41.99 2.90
1324 1372 2.234414 CCCAAAGCTGGCAAATATGTGT 59.766 45.455 0.00 0.00 41.99 3.72
1325 1373 2.496871 TCCCAAAGCTGGCAAATATGTG 59.503 45.455 0.00 0.00 41.99 3.21
1349 1399 3.750130 CGACATGAAGGATGGATCATTCC 59.250 47.826 10.62 5.27 44.44 3.01
1350 1400 4.384056 ACGACATGAAGGATGGATCATTC 58.616 43.478 0.00 7.01 45.06 2.67
1351 1401 4.428294 ACGACATGAAGGATGGATCATT 57.572 40.909 0.00 0.00 36.23 2.57
1352 1402 4.428294 AACGACATGAAGGATGGATCAT 57.572 40.909 0.00 0.00 36.23 2.45
1353 1403 3.912496 AACGACATGAAGGATGGATCA 57.088 42.857 0.00 0.00 36.23 2.92
1354 1404 5.007724 GGTAAAACGACATGAAGGATGGATC 59.992 44.000 0.00 0.00 36.23 3.36
1355 1405 4.881850 GGTAAAACGACATGAAGGATGGAT 59.118 41.667 0.00 0.00 36.23 3.41
1370 1420 3.267483 CTCACATGGGTAGGGTAAAACG 58.733 50.000 0.00 0.00 0.00 3.60
1421 1471 9.042008 AGTAACACTGGTTTATTCGCTATAATG 57.958 33.333 0.00 0.00 38.45 1.90
1465 1518 3.964688 TCATCAGAATAGGGCTCCGTTAA 59.035 43.478 0.00 0.00 0.00 2.01
1481 1534 1.334869 GGCGGCTTTGGTTATCATCAG 59.665 52.381 0.00 0.00 0.00 2.90
1511 1564 1.296715 GAGGGCGAGCCAAGAAAGA 59.703 57.895 16.65 0.00 37.98 2.52
1512 1565 1.003355 TGAGGGCGAGCCAAGAAAG 60.003 57.895 16.65 0.00 37.98 2.62
1513 1566 1.302511 GTGAGGGCGAGCCAAGAAA 60.303 57.895 16.65 0.00 37.98 2.52
1514 1567 2.347490 GTGAGGGCGAGCCAAGAA 59.653 61.111 16.65 0.00 37.98 2.52
1515 1568 4.069232 CGTGAGGGCGAGCCAAGA 62.069 66.667 16.65 0.00 37.98 3.02
1516 1569 3.376935 ATCGTGAGGGCGAGCCAAG 62.377 63.158 16.65 0.00 44.43 3.61
1517 1570 3.371097 GATCGTGAGGGCGAGCCAA 62.371 63.158 16.65 0.00 44.43 4.52
1561 1614 0.606401 AAATGTCTGAGCCACACGGG 60.606 55.000 0.00 0.00 40.85 5.28
1637 1693 2.653234 TACTCCCTAGATCCGACCAC 57.347 55.000 0.00 0.00 0.00 4.16
1671 1727 4.026407 CACGAACTTTTCTTTTGTCGACC 58.974 43.478 14.12 0.00 0.00 4.79
1826 1887 1.399714 CATAGTAGCACCCGTCAGGA 58.600 55.000 0.00 0.00 41.02 3.86
2065 2149 7.817962 ACATAAACGGAGATGCATAATACTACC 59.182 37.037 0.00 0.00 0.00 3.18
2068 2152 6.586463 CGACATAAACGGAGATGCATAATACT 59.414 38.462 0.00 0.00 0.00 2.12
2083 2167 2.510691 AGCCGGGCGACATAAACG 60.511 61.111 14.39 0.00 0.00 3.60
2117 2201 1.179152 ACATGCATGTGGTGATGTGG 58.821 50.000 30.92 0.83 40.03 4.17
2118 2202 5.952526 ATATACATGCATGTGGTGATGTG 57.047 39.130 36.72 8.80 41.89 3.21
2119 2203 9.910267 ATTATATATACATGCATGTGGTGATGT 57.090 29.630 36.72 23.57 41.89 3.06
2121 2205 9.910267 ACATTATATATACATGCATGTGGTGAT 57.090 29.630 36.72 25.47 41.89 3.06
2122 2206 9.165035 CACATTATATATACATGCATGTGGTGA 57.835 33.333 36.72 20.89 41.89 4.02
2123 2207 9.165035 TCACATTATATATACATGCATGTGGTG 57.835 33.333 36.72 26.05 41.89 4.17
2124 2208 9.387257 CTCACATTATATATACATGCATGTGGT 57.613 33.333 36.72 27.21 41.89 4.16
2193 2277 9.927668 AAATTGGTTTGATCGTCTGATATTTTT 57.072 25.926 0.00 0.00 34.09 1.94
2220 2304 8.642885 CGTAGCTAAGCTCTTCAACATATTATG 58.357 37.037 0.00 2.03 40.44 1.90
2364 2614 3.849911 TGAAAGATTCCTAGAGTGTGCG 58.150 45.455 0.00 0.00 0.00 5.34
2394 2644 6.319911 AGAAGAAGAAGAACAAAAAGGACAGG 59.680 38.462 0.00 0.00 0.00 4.00
2437 2687 5.705441 TGATGTTTGACTTCTCCATTACCAC 59.295 40.000 0.00 0.00 0.00 4.16
2448 2698 5.181748 AGAGGCTACATGATGTTTGACTTC 58.818 41.667 2.29 0.00 0.00 3.01
2459 2709 4.145807 GCTAACTCCTAGAGGCTACATGA 58.854 47.826 0.00 0.00 33.35 3.07
2460 2710 3.257127 GGCTAACTCCTAGAGGCTACATG 59.743 52.174 0.00 0.00 33.35 3.21
2461 2711 3.117093 TGGCTAACTCCTAGAGGCTACAT 60.117 47.826 0.00 0.00 36.74 2.29
2462 2712 2.243994 TGGCTAACTCCTAGAGGCTACA 59.756 50.000 0.00 0.00 36.74 2.74
2463 2713 2.624364 GTGGCTAACTCCTAGAGGCTAC 59.376 54.545 0.00 0.00 36.74 3.58
2464 2714 2.514582 AGTGGCTAACTCCTAGAGGCTA 59.485 50.000 0.00 0.00 31.64 3.93
2466 2716 1.783071 AGTGGCTAACTCCTAGAGGC 58.217 55.000 0.00 0.00 31.64 4.70
2467 2717 4.538738 ACTAAGTGGCTAACTCCTAGAGG 58.461 47.826 0.00 0.00 38.56 3.69
2468 2718 6.829811 ACTAACTAAGTGGCTAACTCCTAGAG 59.170 42.308 0.00 0.00 38.56 2.43
2469 2719 6.729428 ACTAACTAAGTGGCTAACTCCTAGA 58.271 40.000 0.00 0.00 38.56 2.43
2548 2812 3.955650 AGATACGGGATGTAATTCGGG 57.044 47.619 0.00 0.00 36.44 5.14
2549 2813 6.034591 GTCATAGATACGGGATGTAATTCGG 58.965 44.000 0.00 0.00 36.44 4.30
2550 2814 5.737757 CGTCATAGATACGGGATGTAATTCG 59.262 44.000 0.00 0.00 36.44 3.34
2551 2815 6.618811 ACGTCATAGATACGGGATGTAATTC 58.381 40.000 0.00 0.00 44.48 2.17
2552 2816 6.585695 ACGTCATAGATACGGGATGTAATT 57.414 37.500 0.00 0.00 44.48 1.40
2553 2817 6.094603 GGTACGTCATAGATACGGGATGTAAT 59.905 42.308 0.00 0.00 44.48 1.89
2555 2819 4.937620 GGTACGTCATAGATACGGGATGTA 59.062 45.833 0.00 0.00 44.48 2.29
2556 2820 3.755378 GGTACGTCATAGATACGGGATGT 59.245 47.826 0.00 0.00 44.48 3.06
2557 2821 3.128242 GGGTACGTCATAGATACGGGATG 59.872 52.174 0.00 0.00 44.48 3.51
2559 2823 2.553028 GGGGTACGTCATAGATACGGGA 60.553 54.545 0.00 0.00 44.48 5.14
2560 2824 1.815003 GGGGTACGTCATAGATACGGG 59.185 57.143 0.00 0.00 44.48 5.28
2561 2825 2.486982 CAGGGGTACGTCATAGATACGG 59.513 54.545 0.00 0.00 44.48 4.02
2566 2901 3.433343 TCAAACAGGGGTACGTCATAGA 58.567 45.455 0.00 0.00 0.00 1.98
2620 2987 2.923605 GCAGACTAACACCGACGCTTTA 60.924 50.000 0.00 0.00 0.00 1.85
2629 2996 1.264288 GCACAACAGCAGACTAACACC 59.736 52.381 0.00 0.00 0.00 4.16
2632 2999 2.213499 AGTGCACAACAGCAGACTAAC 58.787 47.619 21.04 0.00 46.69 2.34
2638 3005 5.180117 AGAAAACTATAGTGCACAACAGCAG 59.820 40.000 21.04 9.21 46.69 4.24
2666 3037 9.931210 GCACCACATCTAAATAAACTGTATTAC 57.069 33.333 0.00 0.00 0.00 1.89
2669 3040 8.574251 TTGCACCACATCTAAATAAACTGTAT 57.426 30.769 0.00 0.00 0.00 2.29
2670 3041 7.987750 TTGCACCACATCTAAATAAACTGTA 57.012 32.000 0.00 0.00 0.00 2.74
2671 3042 6.892658 TTGCACCACATCTAAATAAACTGT 57.107 33.333 0.00 0.00 0.00 3.55
2672 3043 8.761575 AATTTGCACCACATCTAAATAAACTG 57.238 30.769 0.00 0.00 0.00 3.16
2679 3050 7.363705 CCATCCTTAATTTGCACCACATCTAAA 60.364 37.037 0.00 0.00 0.00 1.85
2691 3062 5.391312 AGTGTTGACCATCCTTAATTTGC 57.609 39.130 0.00 0.00 0.00 3.68
2733 3104 4.652679 ATCCCTGTCATACATGCATGAT 57.347 40.909 32.75 17.95 37.28 2.45
2734 3105 5.565455 TTATCCCTGTCATACATGCATGA 57.435 39.130 32.75 16.49 32.50 3.07
2735 3106 5.999600 TCTTTATCCCTGTCATACATGCATG 59.000 40.000 25.09 25.09 0.00 4.06
2736 3107 6.191657 TCTTTATCCCTGTCATACATGCAT 57.808 37.500 0.00 0.00 0.00 3.96
2738 3109 5.050091 CGTTCTTTATCCCTGTCATACATGC 60.050 44.000 0.00 0.00 0.00 4.06
2797 3175 3.009363 TGAAGATTCTGGAGATTGCCACA 59.991 43.478 0.00 0.00 33.52 4.17
2801 3179 2.617774 GCCTGAAGATTCTGGAGATTGC 59.382 50.000 19.30 2.57 45.89 3.56
2830 3208 4.030452 GCCACAACCTCGCACTGC 62.030 66.667 0.00 0.00 0.00 4.40
2901 3279 3.754586 TTATGCATGGGGCTGGGGC 62.755 63.158 10.16 0.00 45.15 5.80
2927 3305 5.245301 ACATAGCCTGCTGAATACGGTTATA 59.755 40.000 0.97 0.00 0.00 0.98
2932 3310 2.224042 TGACATAGCCTGCTGAATACGG 60.224 50.000 0.97 0.00 0.00 4.02
2933 3311 3.097877 TGACATAGCCTGCTGAATACG 57.902 47.619 0.97 0.00 0.00 3.06
2943 3328 1.135094 CTGGTGGGATGACATAGCCT 58.865 55.000 0.00 0.00 34.44 4.58
2952 3337 3.221771 TGAGAAAAACACTGGTGGGATG 58.778 45.455 5.70 0.00 34.19 3.51
3000 3468 6.246163 ACCAAATCCAGGTAAAAAGTAGAGG 58.754 40.000 0.00 0.00 37.67 3.69
3065 3534 4.556697 ACTCCCTGGAAAATTTTGAAGGT 58.443 39.130 19.82 6.20 0.00 3.50
3073 3542 4.524328 CAGCAAAGTACTCCCTGGAAAATT 59.476 41.667 0.00 0.00 0.00 1.82
3166 3635 4.288670 CATGGAGCAAGAACATGTCATC 57.711 45.455 0.00 0.00 37.72 2.92
3188 3657 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3190 3659 3.577805 ATAATTTTGGGACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
3192 3661 3.361786 ACAATAATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
3193 3662 4.270008 AGACAATAATTTTGGGACGGAGG 58.730 43.478 0.00 0.00 0.00 4.30
3194 3663 5.897377 AAGACAATAATTTTGGGACGGAG 57.103 39.130 0.00 0.00 0.00 4.63
3196 3665 6.995511 TCTAAGACAATAATTTTGGGACGG 57.004 37.500 0.00 0.00 0.00 4.79
3197 3666 9.289303 CAAATCTAAGACAATAATTTTGGGACG 57.711 33.333 0.00 0.00 0.00 4.79
3243 3712 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3244 3713 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3245 3714 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3246 3715 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3247 3716 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3248 3717 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3249 3718 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3250 3719 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3251 3720 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3252 3721 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3263 3732 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3264 3733 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3265 3734 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3266 3735 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3267 3736 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3268 3737 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3276 3745 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3277 3746 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3278 3747 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3279 3748 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3280 3749 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3281 3750 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3282 3751 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3283 3752 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3284 3753 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3285 3754 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3286 3755 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3287 3756 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3288 3757 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3289 3758 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3290 3759 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3291 3760 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3292 3761 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3293 3762 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3294 3763 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3295 3764 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3296 3765 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3297 3766 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3298 3767 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3299 3768 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3300 3769 2.149973 TTTACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
3301 3770 4.831710 ACATATTTACTACTCCCTCCGTCC 59.168 45.833 0.00 0.00 0.00 4.79
3302 3771 7.516198 TTACATATTTACTACTCCCTCCGTC 57.484 40.000 0.00 0.00 0.00 4.79
3303 3772 9.765295 ATATTACATATTTACTACTCCCTCCGT 57.235 33.333 0.00 0.00 0.00 4.69
3328 3797 8.043710 GGCAGGCTACTTATATTATGAACTGAT 58.956 37.037 0.00 0.00 0.00 2.90
3332 3801 6.712276 AGGGCAGGCTACTTATATTATGAAC 58.288 40.000 0.00 0.00 0.00 3.18
3340 3809 4.231273 TCATTGAGGGCAGGCTACTTATA 58.769 43.478 0.00 0.00 0.00 0.98
3360 3829 4.239428 TCTTTGAATGATGATGCCCTCA 57.761 40.909 0.00 0.00 38.53 3.86
3366 3835 7.387119 TGGAGTCTTTCTTTGAATGATGATG 57.613 36.000 0.00 0.00 0.00 3.07
3367 3836 7.416438 GCATGGAGTCTTTCTTTGAATGATGAT 60.416 37.037 0.00 0.00 0.00 2.45
3368 3837 6.127814 GCATGGAGTCTTTCTTTGAATGATGA 60.128 38.462 0.00 0.00 0.00 2.92
3606 4093 1.380524 TCTCTCTCGTTCCATCGACC 58.619 55.000 0.00 0.00 35.91 4.79
3658 4145 4.759782 ACAGTTCCTCGGTTATGATTGAG 58.240 43.478 0.00 0.00 0.00 3.02
3741 4228 7.037153 TGGGACACCTTATATTCAACCTAGTTT 60.037 37.037 0.00 0.00 37.76 2.66
3794 4281 5.212532 TGTTTTTGCACCTATGAATGCTT 57.787 34.783 0.00 0.00 42.55 3.91
3832 4319 6.318648 GGGTGAAGAATCATGCACTGTTTATA 59.681 38.462 0.00 0.00 38.01 0.98
3852 4339 9.602568 CAATAAATTCATTCAATCAATGGGTGA 57.397 29.630 0.00 0.00 42.18 4.02
4192 4686 7.221452 TCGCCGAGTAAGATAACAAATTAAGAC 59.779 37.037 0.00 0.00 0.00 3.01
4258 4752 2.167075 GGATGGGATCTTGCAAAGGTTG 59.833 50.000 0.00 0.00 46.24 3.77
4370 4864 5.009310 TGCGTACCCACTAATATACTCACTG 59.991 44.000 0.00 0.00 0.00 3.66
4382 4876 1.687660 TCAGTTGTTGCGTACCCACTA 59.312 47.619 0.00 0.00 0.00 2.74
4511 5014 2.745515 GTCACTGACCAGGGTAGTTC 57.254 55.000 0.00 0.00 32.51 3.01
4807 5329 1.423794 TTGGTCCCACTCCAACCCTC 61.424 60.000 0.00 0.00 39.62 4.30
4931 5453 2.368875 ACTGTGTTTGTCTAGTCCTGGG 59.631 50.000 0.00 0.00 0.00 4.45
5108 5638 4.026393 TGCCGTCGTAAAATATCAACATCG 60.026 41.667 0.00 0.00 0.00 3.84
5124 5654 4.308458 TTGGGTGGACTGCCGTCG 62.308 66.667 1.95 0.00 41.16 5.12
5302 5832 2.681848 GCATCAGACATGGAGTTGGAAG 59.318 50.000 0.00 0.00 0.00 3.46
5458 6025 6.911511 GCTCATGTCTTCAAAATCTGAATAGC 59.088 38.462 0.00 0.00 43.20 2.97
5461 6028 6.625300 GCAGCTCATGTCTTCAAAATCTGAAT 60.625 38.462 0.00 0.00 43.20 2.57
5715 6291 5.657745 TGTGGGCATTTCACTGATATTTCAT 59.342 36.000 0.00 0.00 36.21 2.57
5716 6292 5.015515 TGTGGGCATTTCACTGATATTTCA 58.984 37.500 0.00 0.00 36.21 2.69
5849 6434 7.656542 TCTTGCTCTGAGTGATATGATGATTTC 59.343 37.037 6.53 0.00 0.00 2.17
5988 6580 9.360093 CGATCTGAACTAATTTCTTCTGTTACT 57.640 33.333 0.00 0.00 34.97 2.24
6035 6627 1.412710 TCCGAGCAGACTTTGTCTTGT 59.587 47.619 0.00 0.00 41.37 3.16
6070 6662 4.289342 CAGAGCTCAGATGATTACACTCG 58.711 47.826 17.77 0.00 0.00 4.18
6125 6784 3.954258 GCCATCTACCAAATTGTAGCCTT 59.046 43.478 0.00 0.00 38.46 4.35
6334 6993 9.383519 CAAACCTTAGCTGAGAATTGTAATAGA 57.616 33.333 7.16 0.00 0.00 1.98
6357 7016 7.524698 GCCAATAACCTATTCTGAAACACCAAA 60.525 37.037 0.00 0.00 0.00 3.28
6555 7218 1.752501 CTTCCATCGCCGTAACGCAG 61.753 60.000 0.00 0.00 0.00 5.18
6567 7230 2.480416 CGTGTGACTAGGCTCTTCCATC 60.480 54.545 0.00 0.00 37.29 3.51
6584 7247 1.064208 CTCGTCCTCAATCGATCGTGT 59.936 52.381 15.94 2.26 35.57 4.49
6586 7249 0.029567 GCTCGTCCTCAATCGATCGT 59.970 55.000 15.94 0.00 35.57 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.