Multiple sequence alignment - TraesCS7A01G418800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G418800 chr7A 100.000 4025 0 0 1 4025 610443062 610447086 0.000000e+00 7433.0
1 TraesCS7A01G418800 chr7A 95.038 262 13 0 80 341 535618669 535618930 2.890000e-111 412.0
2 TraesCS7A01G418800 chr7A 96.825 63 1 1 3960 4021 560306161 560306099 1.980000e-18 104.0
3 TraesCS7A01G418800 chr7D 96.683 3105 95 3 928 4025 530120797 530123900 0.000000e+00 5156.0
4 TraesCS7A01G418800 chr7D 90.385 208 16 4 739 945 530113653 530113857 1.840000e-68 270.0
5 TraesCS7A01G418800 chr7D 96.970 66 2 0 3960 4025 494749952 494749887 1.180000e-20 111.0
6 TraesCS7A01G418800 chr7B 95.144 3233 115 17 818 4025 568673299 568676514 0.000000e+00 5062.0
7 TraesCS7A01G418800 chr7B 94.030 268 16 0 81 348 599251212 599250945 1.350000e-109 407.0
8 TraesCS7A01G418800 chr7B 96.970 66 2 0 3960 4025 522721481 522721416 1.180000e-20 111.0
9 TraesCS7A01G418800 chr7B 96.774 62 2 0 3964 4025 373075412 373075473 1.980000e-18 104.0
10 TraesCS7A01G418800 chr6A 95.094 265 13 0 78 342 319204746 319205010 6.220000e-113 418.0
11 TraesCS7A01G418800 chr6A 95.057 263 13 0 79 341 578932400 578932662 8.050000e-112 414.0
12 TraesCS7A01G418800 chr6A 94.361 266 15 0 77 342 558902804 558903069 3.740000e-110 409.0
13 TraesCS7A01G418800 chr3A 95.094 265 12 1 81 344 690072219 690072483 2.240000e-112 416.0
14 TraesCS7A01G418800 chr3A 95.038 262 13 0 80 341 7126931 7127192 2.890000e-111 412.0
15 TraesCS7A01G418800 chr3A 94.697 264 13 1 81 344 79442752 79443014 3.740000e-110 409.0
16 TraesCS7A01G418800 chr3A 95.312 64 3 0 3962 4025 34532615 34532552 7.120000e-18 102.0
17 TraesCS7A01G418800 chr3A 91.549 71 5 1 3955 4025 547478206 547478275 3.310000e-16 97.1
18 TraesCS7A01G418800 chr2A 94.757 267 13 1 80 346 653300491 653300226 8.050000e-112 414.0
19 TraesCS7A01G418800 chr1D 95.312 64 3 0 3962 4025 60407174 60407237 7.120000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G418800 chr7A 610443062 610447086 4024 False 7433 7433 100.000 1 4025 1 chr7A.!!$F2 4024
1 TraesCS7A01G418800 chr7D 530120797 530123900 3103 False 5156 5156 96.683 928 4025 1 chr7D.!!$F2 3097
2 TraesCS7A01G418800 chr7B 568673299 568676514 3215 False 5062 5062 95.144 818 4025 1 chr7B.!!$F2 3207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 604 0.035317 TTGTGCTCCGTCATGAAGCT 59.965 50.0 16.69 0.0 0.00 3.74 F
606 607 0.035317 TGCTCCGTCATGAAGCTTGT 59.965 50.0 16.69 0.0 0.00 3.16 F
784 785 0.038166 ACCATGTTTCCGACTGCCAT 59.962 50.0 0.00 0.0 0.00 4.40 F
786 787 0.179156 CATGTTTCCGACTGCCATGC 60.179 55.0 0.00 0.0 0.00 4.06 F
1899 1915 0.320946 TTGTTCGGAATGGACGACCC 60.321 55.0 0.34 0.0 40.45 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2225 0.252239 GCCTTTCCCACTTCCCCAAT 60.252 55.000 0.00 0.0 0.00 3.16 R
2577 2593 0.669318 CGGCAAGAAAGGTGTAGCGA 60.669 55.000 0.00 0.0 0.00 4.93 R
2612 2628 3.541632 TCTTCAACAAGACCTGTGTTCC 58.458 45.455 0.00 0.0 38.67 3.62 R
2825 2847 5.193527 TCTCCAATCACCAAATTCCCAGATA 59.806 40.000 0.00 0.0 0.00 1.98 R
3315 3342 0.036388 ATGGCCTAACTGGTGTCACG 60.036 55.000 3.32 0.0 38.35 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.761071 GCTTCTTGGCTTCCTCTCG 58.239 57.895 0.00 0.00 0.00 4.04
19 20 0.247736 GCTTCTTGGCTTCCTCTCGA 59.752 55.000 0.00 0.00 0.00 4.04
20 21 1.338200 GCTTCTTGGCTTCCTCTCGAA 60.338 52.381 0.00 0.00 0.00 3.71
37 38 3.717707 TCGAAGAGAAACCAAGAGTGTG 58.282 45.455 0.00 0.00 0.00 3.82
38 39 2.221981 CGAAGAGAAACCAAGAGTGTGC 59.778 50.000 0.00 0.00 0.00 4.57
39 40 3.206150 GAAGAGAAACCAAGAGTGTGCA 58.794 45.455 0.00 0.00 0.00 4.57
40 41 3.498774 AGAGAAACCAAGAGTGTGCAT 57.501 42.857 0.00 0.00 0.00 3.96
41 42 3.825328 AGAGAAACCAAGAGTGTGCATT 58.175 40.909 0.00 0.00 0.00 3.56
42 43 4.210331 AGAGAAACCAAGAGTGTGCATTT 58.790 39.130 0.00 0.00 0.00 2.32
43 44 4.646492 AGAGAAACCAAGAGTGTGCATTTT 59.354 37.500 0.00 0.00 0.00 1.82
44 45 4.685924 AGAAACCAAGAGTGTGCATTTTG 58.314 39.130 0.00 0.00 0.00 2.44
45 46 4.402155 AGAAACCAAGAGTGTGCATTTTGA 59.598 37.500 0.00 0.00 0.00 2.69
46 47 3.715628 ACCAAGAGTGTGCATTTTGAC 57.284 42.857 0.00 0.00 0.00 3.18
47 48 3.023119 ACCAAGAGTGTGCATTTTGACA 58.977 40.909 0.00 0.00 0.00 3.58
48 49 3.638160 ACCAAGAGTGTGCATTTTGACAT 59.362 39.130 0.00 0.00 0.00 3.06
49 50 3.985279 CCAAGAGTGTGCATTTTGACATG 59.015 43.478 0.00 0.00 0.00 3.21
56 57 2.747396 GCATTTTGACATGCTGGGAA 57.253 45.000 0.00 0.00 45.35 3.97
57 58 3.042871 GCATTTTGACATGCTGGGAAA 57.957 42.857 0.00 0.00 45.35 3.13
58 59 3.602483 GCATTTTGACATGCTGGGAAAT 58.398 40.909 0.00 0.00 45.35 2.17
59 60 3.372822 GCATTTTGACATGCTGGGAAATG 59.627 43.478 12.47 12.47 45.35 2.32
60 61 3.681593 TTTTGACATGCTGGGAAATGG 57.318 42.857 0.00 0.00 0.00 3.16
61 62 2.601240 TTGACATGCTGGGAAATGGA 57.399 45.000 0.00 0.00 0.00 3.41
62 63 2.601240 TGACATGCTGGGAAATGGAA 57.399 45.000 0.00 0.00 0.00 3.53
63 64 2.886913 TGACATGCTGGGAAATGGAAA 58.113 42.857 0.00 0.00 0.00 3.13
64 65 2.827322 TGACATGCTGGGAAATGGAAAG 59.173 45.455 0.00 0.00 0.00 2.62
65 66 3.091545 GACATGCTGGGAAATGGAAAGA 58.908 45.455 0.00 0.00 0.00 2.52
66 67 3.703052 GACATGCTGGGAAATGGAAAGAT 59.297 43.478 0.00 0.00 0.00 2.40
67 68 4.098894 ACATGCTGGGAAATGGAAAGATT 58.901 39.130 0.00 0.00 0.00 2.40
68 69 5.271598 ACATGCTGGGAAATGGAAAGATTA 58.728 37.500 0.00 0.00 0.00 1.75
69 70 5.361857 ACATGCTGGGAAATGGAAAGATTAG 59.638 40.000 0.00 0.00 0.00 1.73
70 71 3.701040 TGCTGGGAAATGGAAAGATTAGC 59.299 43.478 0.00 0.00 0.00 3.09
71 72 3.956848 GCTGGGAAATGGAAAGATTAGCT 59.043 43.478 0.00 0.00 0.00 3.32
72 73 4.037327 GCTGGGAAATGGAAAGATTAGCTC 59.963 45.833 0.00 0.00 0.00 4.09
73 74 5.444176 CTGGGAAATGGAAAGATTAGCTCT 58.556 41.667 0.00 0.00 34.96 4.09
74 75 5.195940 TGGGAAATGGAAAGATTAGCTCTG 58.804 41.667 0.00 0.00 33.29 3.35
75 76 5.196695 GGGAAATGGAAAGATTAGCTCTGT 58.803 41.667 0.00 0.00 33.29 3.41
76 77 5.654209 GGGAAATGGAAAGATTAGCTCTGTT 59.346 40.000 0.00 0.00 33.29 3.16
77 78 6.153510 GGGAAATGGAAAGATTAGCTCTGTTT 59.846 38.462 0.00 0.00 33.29 2.83
78 79 7.310052 GGGAAATGGAAAGATTAGCTCTGTTTT 60.310 37.037 0.00 0.00 33.29 2.43
79 80 7.543520 GGAAATGGAAAGATTAGCTCTGTTTTG 59.456 37.037 0.00 0.00 33.29 2.44
80 81 7.530426 AATGGAAAGATTAGCTCTGTTTTGT 57.470 32.000 0.00 0.00 33.29 2.83
81 82 8.635765 AATGGAAAGATTAGCTCTGTTTTGTA 57.364 30.769 0.00 0.00 33.29 2.41
82 83 7.435068 TGGAAAGATTAGCTCTGTTTTGTAC 57.565 36.000 0.00 0.00 33.29 2.90
83 84 7.224297 TGGAAAGATTAGCTCTGTTTTGTACT 58.776 34.615 0.00 0.00 33.29 2.73
84 85 7.387948 TGGAAAGATTAGCTCTGTTTTGTACTC 59.612 37.037 0.00 0.00 33.29 2.59
85 86 7.148390 GGAAAGATTAGCTCTGTTTTGTACTCC 60.148 40.741 0.00 0.00 33.29 3.85
86 87 5.735766 AGATTAGCTCTGTTTTGTACTCCC 58.264 41.667 0.00 0.00 31.12 4.30
87 88 5.485708 AGATTAGCTCTGTTTTGTACTCCCT 59.514 40.000 0.00 0.00 31.12 4.20
88 89 5.562298 TTAGCTCTGTTTTGTACTCCCTT 57.438 39.130 0.00 0.00 0.00 3.95
89 90 4.009370 AGCTCTGTTTTGTACTCCCTTC 57.991 45.455 0.00 0.00 0.00 3.46
90 91 3.391296 AGCTCTGTTTTGTACTCCCTTCA 59.609 43.478 0.00 0.00 0.00 3.02
91 92 3.748568 GCTCTGTTTTGTACTCCCTTCAG 59.251 47.826 0.00 0.00 0.00 3.02
92 93 4.743955 GCTCTGTTTTGTACTCCCTTCAGT 60.744 45.833 0.00 0.00 0.00 3.41
93 94 5.367945 TCTGTTTTGTACTCCCTTCAGTT 57.632 39.130 0.00 0.00 0.00 3.16
94 95 5.365619 TCTGTTTTGTACTCCCTTCAGTTC 58.634 41.667 0.00 0.00 0.00 3.01
95 96 5.130477 TCTGTTTTGTACTCCCTTCAGTTCT 59.870 40.000 0.00 0.00 0.00 3.01
96 97 5.751586 TGTTTTGTACTCCCTTCAGTTCTT 58.248 37.500 0.00 0.00 0.00 2.52
97 98 6.184789 TGTTTTGTACTCCCTTCAGTTCTTT 58.815 36.000 0.00 0.00 0.00 2.52
98 99 6.661805 TGTTTTGTACTCCCTTCAGTTCTTTT 59.338 34.615 0.00 0.00 0.00 2.27
99 100 7.177744 TGTTTTGTACTCCCTTCAGTTCTTTTT 59.822 33.333 0.00 0.00 0.00 1.94
100 101 8.680001 GTTTTGTACTCCCTTCAGTTCTTTTTA 58.320 33.333 0.00 0.00 0.00 1.52
101 102 7.797038 TTGTACTCCCTTCAGTTCTTTTTAC 57.203 36.000 0.00 0.00 0.00 2.01
102 103 7.133133 TGTACTCCCTTCAGTTCTTTTTACT 57.867 36.000 0.00 0.00 0.00 2.24
103 104 7.215085 TGTACTCCCTTCAGTTCTTTTTACTC 58.785 38.462 0.00 0.00 0.00 2.59
104 105 6.502074 ACTCCCTTCAGTTCTTTTTACTCT 57.498 37.500 0.00 0.00 0.00 3.24
105 106 6.292150 ACTCCCTTCAGTTCTTTTTACTCTG 58.708 40.000 0.00 0.00 0.00 3.35
106 107 5.063880 TCCCTTCAGTTCTTTTTACTCTGC 58.936 41.667 0.00 0.00 0.00 4.26
107 108 4.821805 CCCTTCAGTTCTTTTTACTCTGCA 59.178 41.667 0.00 0.00 0.00 4.41
108 109 5.474876 CCCTTCAGTTCTTTTTACTCTGCAT 59.525 40.000 0.00 0.00 0.00 3.96
109 110 6.655003 CCCTTCAGTTCTTTTTACTCTGCATA 59.345 38.462 0.00 0.00 0.00 3.14
110 111 7.337942 CCCTTCAGTTCTTTTTACTCTGCATAT 59.662 37.037 0.00 0.00 0.00 1.78
111 112 8.734386 CCTTCAGTTCTTTTTACTCTGCATATT 58.266 33.333 0.00 0.00 0.00 1.28
183 184 5.864418 AAAATATCAACATCTGCCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
184 185 6.964807 AAAATATCAACATCTGCCATGCTA 57.035 33.333 0.00 0.00 0.00 3.49
185 186 6.964807 AAATATCAACATCTGCCATGCTAA 57.035 33.333 0.00 0.00 0.00 3.09
186 187 6.964807 AATATCAACATCTGCCATGCTAAA 57.035 33.333 0.00 0.00 0.00 1.85
187 188 4.913335 ATCAACATCTGCCATGCTAAAG 57.087 40.909 0.00 0.00 0.00 1.85
188 189 3.689347 TCAACATCTGCCATGCTAAAGT 58.311 40.909 0.00 0.00 0.00 2.66
189 190 4.081406 TCAACATCTGCCATGCTAAAGTT 58.919 39.130 0.00 0.00 0.00 2.66
190 191 5.252547 TCAACATCTGCCATGCTAAAGTTA 58.747 37.500 0.00 0.00 0.00 2.24
191 192 5.887598 TCAACATCTGCCATGCTAAAGTTAT 59.112 36.000 0.00 0.00 0.00 1.89
192 193 7.053498 TCAACATCTGCCATGCTAAAGTTATA 58.947 34.615 0.00 0.00 0.00 0.98
193 194 6.867662 ACATCTGCCATGCTAAAGTTATAC 57.132 37.500 0.00 0.00 0.00 1.47
194 195 6.356556 ACATCTGCCATGCTAAAGTTATACA 58.643 36.000 0.00 0.00 0.00 2.29
195 196 6.828273 ACATCTGCCATGCTAAAGTTATACAA 59.172 34.615 0.00 0.00 0.00 2.41
196 197 7.503566 ACATCTGCCATGCTAAAGTTATACAAT 59.496 33.333 0.00 0.00 0.00 2.71
197 198 9.002600 CATCTGCCATGCTAAAGTTATACAATA 57.997 33.333 0.00 0.00 0.00 1.90
198 199 9.745018 ATCTGCCATGCTAAAGTTATACAATAT 57.255 29.630 0.00 0.00 0.00 1.28
199 200 9.002600 TCTGCCATGCTAAAGTTATACAATATG 57.997 33.333 0.00 0.00 0.00 1.78
200 201 8.916628 TGCCATGCTAAAGTTATACAATATGA 57.083 30.769 0.00 0.00 0.00 2.15
201 202 9.348476 TGCCATGCTAAAGTTATACAATATGAA 57.652 29.630 0.00 0.00 0.00 2.57
253 254 9.811995 ATATTGATTTCAGATTGTGAATGTTGG 57.188 29.630 0.00 0.00 44.89 3.77
254 255 6.653526 TGATTTCAGATTGTGAATGTTGGT 57.346 33.333 0.00 0.00 44.89 3.67
255 256 7.757941 TGATTTCAGATTGTGAATGTTGGTA 57.242 32.000 0.00 0.00 44.89 3.25
256 257 7.592938 TGATTTCAGATTGTGAATGTTGGTAC 58.407 34.615 0.00 0.00 44.89 3.34
257 258 7.448161 TGATTTCAGATTGTGAATGTTGGTACT 59.552 33.333 0.00 0.00 44.89 2.73
258 259 7.581213 TTTCAGATTGTGAATGTTGGTACTT 57.419 32.000 0.00 0.00 44.89 2.24
259 260 7.581213 TTCAGATTGTGAATGTTGGTACTTT 57.419 32.000 0.00 0.00 40.45 2.66
260 261 7.581213 TCAGATTGTGAATGTTGGTACTTTT 57.419 32.000 0.00 0.00 29.64 2.27
261 262 8.006298 TCAGATTGTGAATGTTGGTACTTTTT 57.994 30.769 0.00 0.00 29.64 1.94
290 291 6.918892 AAAGTTGGTCAAATTTTACAAGGC 57.081 33.333 4.96 0.00 35.39 4.35
291 292 5.869649 AGTTGGTCAAATTTTACAAGGCT 57.130 34.783 4.96 0.00 0.00 4.58
292 293 6.233905 AGTTGGTCAAATTTTACAAGGCTT 57.766 33.333 4.96 0.00 0.00 4.35
293 294 6.048509 AGTTGGTCAAATTTTACAAGGCTTG 58.951 36.000 25.06 25.06 0.00 4.01
294 295 5.860941 TGGTCAAATTTTACAAGGCTTGA 57.139 34.783 32.50 14.02 0.00 3.02
295 296 5.596845 TGGTCAAATTTTACAAGGCTTGAC 58.403 37.500 32.50 16.70 41.09 3.18
296 297 5.362430 TGGTCAAATTTTACAAGGCTTGACT 59.638 36.000 32.50 14.54 41.40 3.41
297 298 6.127196 TGGTCAAATTTTACAAGGCTTGACTT 60.127 34.615 32.50 13.80 41.40 3.01
298 299 6.420903 GGTCAAATTTTACAAGGCTTGACTTC 59.579 38.462 32.50 10.95 41.40 3.01
299 300 6.978080 GTCAAATTTTACAAGGCTTGACTTCA 59.022 34.615 32.50 12.83 39.54 3.02
300 301 7.168135 GTCAAATTTTACAAGGCTTGACTTCAG 59.832 37.037 32.50 14.62 39.54 3.02
301 302 6.715347 AATTTTACAAGGCTTGACTTCAGT 57.285 33.333 32.50 11.58 0.00 3.41
302 303 5.751243 TTTTACAAGGCTTGACTTCAGTC 57.249 39.130 32.50 0.00 44.97 3.51
317 318 7.700322 GACTTCAGTCAAATCTTATATGCGA 57.300 36.000 1.86 0.00 44.18 5.10
318 319 8.131455 GACTTCAGTCAAATCTTATATGCGAA 57.869 34.615 1.86 0.00 44.18 4.70
319 320 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
320 321 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
321 322 9.249457 CTTCAGTCAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 0.00 2.24
322 323 9.594478 TTCAGTCAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 0.00 2.24
323 324 9.594478 TCAGTCAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 0.00 1.85
330 331 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
331 332 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
332 333 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
333 334 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
334 335 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
366 367 2.710096 TTTTCGATCCTGGGGTGATC 57.290 50.000 0.00 0.00 36.18 2.92
371 372 2.464157 GATCCTGGGGTGATCGATTC 57.536 55.000 0.00 0.00 30.23 2.52
372 373 1.974236 GATCCTGGGGTGATCGATTCT 59.026 52.381 0.00 0.00 30.23 2.40
373 374 1.879575 TCCTGGGGTGATCGATTCTT 58.120 50.000 0.00 0.00 0.00 2.52
374 375 2.196595 TCCTGGGGTGATCGATTCTTT 58.803 47.619 0.00 0.00 0.00 2.52
375 376 2.092968 TCCTGGGGTGATCGATTCTTTG 60.093 50.000 0.00 0.00 0.00 2.77
376 377 2.356125 CCTGGGGTGATCGATTCTTTGT 60.356 50.000 0.00 0.00 0.00 2.83
377 378 3.347216 CTGGGGTGATCGATTCTTTGTT 58.653 45.455 0.00 0.00 0.00 2.83
378 379 3.758554 CTGGGGTGATCGATTCTTTGTTT 59.241 43.478 0.00 0.00 0.00 2.83
379 380 3.505680 TGGGGTGATCGATTCTTTGTTTG 59.494 43.478 0.00 0.00 0.00 2.93
380 381 3.501950 GGGTGATCGATTCTTTGTTTGC 58.498 45.455 0.00 0.00 0.00 3.68
381 382 3.057596 GGGTGATCGATTCTTTGTTTGCA 60.058 43.478 0.00 0.00 0.00 4.08
382 383 4.545610 GGTGATCGATTCTTTGTTTGCAA 58.454 39.130 0.00 0.00 0.00 4.08
383 384 4.382754 GGTGATCGATTCTTTGTTTGCAAC 59.617 41.667 0.00 0.00 33.82 4.17
384 385 5.215160 GTGATCGATTCTTTGTTTGCAACT 58.785 37.500 0.00 0.00 33.82 3.16
385 386 5.687285 GTGATCGATTCTTTGTTTGCAACTT 59.313 36.000 0.00 0.00 33.82 2.66
386 387 5.686841 TGATCGATTCTTTGTTTGCAACTTG 59.313 36.000 0.00 0.00 33.82 3.16
387 388 4.992688 TCGATTCTTTGTTTGCAACTTGT 58.007 34.783 0.00 0.00 33.82 3.16
388 389 4.797868 TCGATTCTTTGTTTGCAACTTGTG 59.202 37.500 0.00 0.00 33.82 3.33
389 390 4.562394 CGATTCTTTGTTTGCAACTTGTGT 59.438 37.500 0.00 0.00 33.82 3.72
390 391 5.741510 CGATTCTTTGTTTGCAACTTGTGTA 59.258 36.000 0.00 0.00 33.82 2.90
391 392 6.291060 CGATTCTTTGTTTGCAACTTGTGTAC 60.291 38.462 0.00 0.00 33.82 2.90
392 393 5.637006 TCTTTGTTTGCAACTTGTGTACT 57.363 34.783 0.00 0.00 33.82 2.73
393 394 6.745159 TCTTTGTTTGCAACTTGTGTACTA 57.255 33.333 0.00 0.00 33.82 1.82
394 395 7.147143 TCTTTGTTTGCAACTTGTGTACTAA 57.853 32.000 0.00 0.00 33.82 2.24
395 396 7.767261 TCTTTGTTTGCAACTTGTGTACTAAT 58.233 30.769 0.00 0.00 33.82 1.73
396 397 8.894731 TCTTTGTTTGCAACTTGTGTACTAATA 58.105 29.630 0.00 0.00 33.82 0.98
397 398 9.509855 CTTTGTTTGCAACTTGTGTACTAATAA 57.490 29.630 0.00 0.00 33.82 1.40
398 399 9.856488 TTTGTTTGCAACTTGTGTACTAATAAA 57.144 25.926 0.00 0.00 33.82 1.40
399 400 9.509855 TTGTTTGCAACTTGTGTACTAATAAAG 57.490 29.630 0.00 0.00 0.00 1.85
400 401 8.132362 TGTTTGCAACTTGTGTACTAATAAAGG 58.868 33.333 0.00 0.00 0.00 3.11
401 402 6.811253 TGCAACTTGTGTACTAATAAAGGG 57.189 37.500 0.00 0.00 0.00 3.95
402 403 5.708230 TGCAACTTGTGTACTAATAAAGGGG 59.292 40.000 0.00 0.00 0.00 4.79
403 404 5.708697 GCAACTTGTGTACTAATAAAGGGGT 59.291 40.000 0.00 0.00 0.00 4.95
404 405 6.208007 GCAACTTGTGTACTAATAAAGGGGTT 59.792 38.462 0.00 0.00 0.00 4.11
405 406 7.590279 CAACTTGTGTACTAATAAAGGGGTTG 58.410 38.462 0.00 0.00 0.00 3.77
406 407 6.844829 ACTTGTGTACTAATAAAGGGGTTGT 58.155 36.000 0.00 0.00 0.00 3.32
407 408 7.976712 ACTTGTGTACTAATAAAGGGGTTGTA 58.023 34.615 0.00 0.00 0.00 2.41
408 409 8.608598 ACTTGTGTACTAATAAAGGGGTTGTAT 58.391 33.333 0.00 0.00 0.00 2.29
409 410 8.795842 TTGTGTACTAATAAAGGGGTTGTATG 57.204 34.615 0.00 0.00 0.00 2.39
410 411 7.920227 TGTGTACTAATAAAGGGGTTGTATGT 58.080 34.615 0.00 0.00 0.00 2.29
411 412 9.044646 TGTGTACTAATAAAGGGGTTGTATGTA 57.955 33.333 0.00 0.00 0.00 2.29
412 413 9.889128 GTGTACTAATAAAGGGGTTGTATGTAA 57.111 33.333 0.00 0.00 0.00 2.41
416 417 6.769134 AATAAAGGGGTTGTATGTAAGTGC 57.231 37.500 0.00 0.00 0.00 4.40
417 418 4.382386 AAAGGGGTTGTATGTAAGTGCT 57.618 40.909 0.00 0.00 0.00 4.40
418 419 4.382386 AAGGGGTTGTATGTAAGTGCTT 57.618 40.909 0.00 0.00 0.00 3.91
419 420 5.508280 AAGGGGTTGTATGTAAGTGCTTA 57.492 39.130 0.00 0.00 0.00 3.09
420 421 4.840271 AGGGGTTGTATGTAAGTGCTTAC 58.160 43.478 13.49 13.49 44.16 2.34
421 422 3.943381 GGGGTTGTATGTAAGTGCTTACC 59.057 47.826 16.60 4.87 43.47 2.85
422 423 3.943381 GGGTTGTATGTAAGTGCTTACCC 59.057 47.826 16.60 9.51 43.47 3.69
423 424 4.324022 GGGTTGTATGTAAGTGCTTACCCT 60.324 45.833 16.60 8.76 43.47 4.34
424 425 4.874396 GGTTGTATGTAAGTGCTTACCCTC 59.126 45.833 16.60 9.00 43.47 4.30
425 426 4.380841 TGTATGTAAGTGCTTACCCTCG 57.619 45.455 16.60 0.00 43.47 4.63
426 427 3.765511 TGTATGTAAGTGCTTACCCTCGT 59.234 43.478 16.60 4.04 43.47 4.18
427 428 3.521947 ATGTAAGTGCTTACCCTCGTC 57.478 47.619 16.60 0.00 43.47 4.20
428 429 2.522185 TGTAAGTGCTTACCCTCGTCT 58.478 47.619 16.60 0.00 43.47 4.18
429 430 2.895404 TGTAAGTGCTTACCCTCGTCTT 59.105 45.455 16.60 0.00 43.47 3.01
430 431 4.081406 TGTAAGTGCTTACCCTCGTCTTA 58.919 43.478 16.60 0.00 43.47 2.10
431 432 3.870633 AAGTGCTTACCCTCGTCTTAG 57.129 47.619 0.00 0.00 0.00 2.18
432 433 1.477295 AGTGCTTACCCTCGTCTTAGC 59.523 52.381 0.00 0.00 0.00 3.09
433 434 1.203994 GTGCTTACCCTCGTCTTAGCA 59.796 52.381 0.00 0.00 36.38 3.49
434 435 2.108168 TGCTTACCCTCGTCTTAGCAT 58.892 47.619 0.00 0.00 34.05 3.79
435 436 3.067742 GTGCTTACCCTCGTCTTAGCATA 59.932 47.826 0.00 0.00 40.32 3.14
436 437 3.318275 TGCTTACCCTCGTCTTAGCATAG 59.682 47.826 0.00 0.00 34.05 2.23
437 438 3.857756 GCTTACCCTCGTCTTAGCATAGC 60.858 52.174 0.00 0.00 0.00 2.97
438 439 2.074729 ACCCTCGTCTTAGCATAGCT 57.925 50.000 0.00 0.00 43.41 3.32
439 440 2.389715 ACCCTCGTCTTAGCATAGCTT 58.610 47.619 0.00 0.00 40.44 3.74
440 441 2.101582 ACCCTCGTCTTAGCATAGCTTG 59.898 50.000 0.00 0.00 40.44 4.01
441 442 2.362397 CCCTCGTCTTAGCATAGCTTGA 59.638 50.000 0.00 0.00 40.44 3.02
442 443 3.181475 CCCTCGTCTTAGCATAGCTTGAA 60.181 47.826 0.00 0.00 40.44 2.69
443 444 4.047822 CCTCGTCTTAGCATAGCTTGAAG 58.952 47.826 0.00 0.00 40.44 3.02
444 445 4.202060 CCTCGTCTTAGCATAGCTTGAAGA 60.202 45.833 0.00 0.00 40.44 2.87
445 446 4.926244 TCGTCTTAGCATAGCTTGAAGAG 58.074 43.478 0.00 1.71 40.44 2.85
446 447 4.399618 TCGTCTTAGCATAGCTTGAAGAGT 59.600 41.667 0.00 0.00 40.44 3.24
447 448 4.737765 CGTCTTAGCATAGCTTGAAGAGTC 59.262 45.833 0.00 0.00 40.44 3.36
448 449 5.655488 GTCTTAGCATAGCTTGAAGAGTCA 58.345 41.667 0.00 0.00 40.44 3.41
449 450 6.102663 GTCTTAGCATAGCTTGAAGAGTCAA 58.897 40.000 0.00 0.00 41.57 3.18
460 461 4.813750 TGAAGAGTCAAGATGATGCAGA 57.186 40.909 0.00 0.00 0.00 4.26
461 462 4.502016 TGAAGAGTCAAGATGATGCAGAC 58.498 43.478 0.00 0.00 0.00 3.51
462 463 4.020839 TGAAGAGTCAAGATGATGCAGACA 60.021 41.667 0.00 0.00 0.00 3.41
463 464 4.757019 AGAGTCAAGATGATGCAGACAT 57.243 40.909 8.57 8.57 39.98 3.06
464 465 8.535515 TTGAAGAGTCAAGATGATGCAGACATC 61.536 40.741 21.46 21.46 44.29 3.06
472 473 2.304428 ATGCAGACATCACGCATCG 58.696 52.632 0.00 0.00 42.58 3.84
473 474 0.179103 ATGCAGACATCACGCATCGA 60.179 50.000 0.00 0.00 42.58 3.59
474 475 0.803380 TGCAGACATCACGCATCGAG 60.803 55.000 0.00 0.00 0.00 4.04
475 476 1.485838 GCAGACATCACGCATCGAGG 61.486 60.000 0.00 0.00 0.00 4.63
476 477 1.227089 AGACATCACGCATCGAGGC 60.227 57.895 12.96 12.96 0.00 4.70
477 478 2.202932 ACATCACGCATCGAGGCC 60.203 61.111 17.46 0.00 0.00 5.19
478 479 3.333189 CATCACGCATCGAGGCCG 61.333 66.667 17.46 13.89 37.07 6.13
488 489 1.816537 TCGAGGCCGATCTTCAAGG 59.183 57.895 0.00 0.00 40.30 3.61
492 493 2.512515 GCCGATCTTCAAGGCGCT 60.513 61.111 7.64 0.00 41.53 5.92
493 494 2.529619 GCCGATCTTCAAGGCGCTC 61.530 63.158 7.64 0.00 41.53 5.03
494 495 1.142748 CCGATCTTCAAGGCGCTCT 59.857 57.895 7.64 0.00 0.00 4.09
495 496 1.150567 CCGATCTTCAAGGCGCTCTG 61.151 60.000 7.64 5.00 0.00 3.35
496 497 1.760268 CGATCTTCAAGGCGCTCTGC 61.760 60.000 7.64 0.00 45.38 4.26
505 506 4.094684 GCGCTCTGCATCTAACGT 57.905 55.556 0.00 0.00 45.45 3.99
506 507 1.633171 GCGCTCTGCATCTAACGTG 59.367 57.895 0.00 0.00 45.45 4.49
507 508 1.756375 GCGCTCTGCATCTAACGTGG 61.756 60.000 0.00 0.00 45.45 4.94
508 509 1.148157 CGCTCTGCATCTAACGTGGG 61.148 60.000 0.00 0.00 0.00 4.61
509 510 0.811616 GCTCTGCATCTAACGTGGGG 60.812 60.000 0.00 0.00 0.00 4.96
510 511 0.811616 CTCTGCATCTAACGTGGGGC 60.812 60.000 0.00 0.00 0.00 5.80
512 513 2.185867 GCATCTAACGTGGGGCGA 59.814 61.111 0.00 0.00 44.77 5.54
513 514 1.448893 GCATCTAACGTGGGGCGAA 60.449 57.895 0.00 0.00 44.77 4.70
514 515 1.022451 GCATCTAACGTGGGGCGAAA 61.022 55.000 0.00 0.00 44.77 3.46
515 516 1.006832 CATCTAACGTGGGGCGAAAG 58.993 55.000 0.00 0.00 44.77 2.62
516 517 0.899720 ATCTAACGTGGGGCGAAAGA 59.100 50.000 0.00 0.00 44.77 2.52
517 518 0.680618 TCTAACGTGGGGCGAAAGAA 59.319 50.000 0.00 0.00 44.77 2.52
518 519 1.070445 TCTAACGTGGGGCGAAAGAAA 59.930 47.619 0.00 0.00 44.77 2.52
519 520 1.874872 CTAACGTGGGGCGAAAGAAAA 59.125 47.619 0.00 0.00 44.77 2.29
520 521 1.104630 AACGTGGGGCGAAAGAAAAA 58.895 45.000 0.00 0.00 44.77 1.94
566 567 4.944962 TTCAGTTTGATATGCTTCACCG 57.055 40.909 0.00 0.00 0.00 4.94
567 568 4.200838 TCAGTTTGATATGCTTCACCGA 57.799 40.909 0.00 0.00 0.00 4.69
568 569 4.574892 TCAGTTTGATATGCTTCACCGAA 58.425 39.130 0.00 0.00 0.00 4.30
569 570 4.391830 TCAGTTTGATATGCTTCACCGAAC 59.608 41.667 0.00 0.00 0.00 3.95
570 571 3.689649 AGTTTGATATGCTTCACCGAACC 59.310 43.478 0.00 0.00 0.00 3.62
571 572 3.342377 TTGATATGCTTCACCGAACCA 57.658 42.857 0.00 0.00 0.00 3.67
572 573 3.342377 TGATATGCTTCACCGAACCAA 57.658 42.857 0.00 0.00 0.00 3.67
573 574 3.680490 TGATATGCTTCACCGAACCAAA 58.320 40.909 0.00 0.00 0.00 3.28
574 575 4.075682 TGATATGCTTCACCGAACCAAAA 58.924 39.130 0.00 0.00 0.00 2.44
575 576 4.155826 TGATATGCTTCACCGAACCAAAAG 59.844 41.667 0.00 0.00 0.00 2.27
576 577 1.028905 TGCTTCACCGAACCAAAAGG 58.971 50.000 0.00 0.00 0.00 3.11
577 578 1.314730 GCTTCACCGAACCAAAAGGA 58.685 50.000 0.00 0.00 0.00 3.36
578 579 1.266989 GCTTCACCGAACCAAAAGGAG 59.733 52.381 0.00 0.00 0.00 3.69
579 580 1.266989 CTTCACCGAACCAAAAGGAGC 59.733 52.381 0.00 0.00 0.00 4.70
580 581 0.181587 TCACCGAACCAAAAGGAGCA 59.818 50.000 0.00 0.00 0.00 4.26
581 582 0.310854 CACCGAACCAAAAGGAGCAC 59.689 55.000 0.00 0.00 0.00 4.40
582 583 1.164041 ACCGAACCAAAAGGAGCACG 61.164 55.000 0.00 0.00 0.00 5.34
583 584 0.882927 CCGAACCAAAAGGAGCACGA 60.883 55.000 0.00 0.00 0.00 4.35
584 585 1.156736 CGAACCAAAAGGAGCACGAT 58.843 50.000 0.00 0.00 0.00 3.73
585 586 1.535462 CGAACCAAAAGGAGCACGATT 59.465 47.619 0.00 0.00 0.00 3.34
586 587 2.665519 CGAACCAAAAGGAGCACGATTG 60.666 50.000 0.00 0.00 0.00 2.67
587 588 1.981256 ACCAAAAGGAGCACGATTGT 58.019 45.000 0.00 0.00 0.00 2.71
596 597 4.260194 CACGATTGTGCTCCGTCA 57.740 55.556 0.00 0.00 39.67 4.35
597 598 2.754648 CACGATTGTGCTCCGTCAT 58.245 52.632 0.00 0.00 39.67 3.06
598 599 0.371301 CACGATTGTGCTCCGTCATG 59.629 55.000 0.00 0.00 39.67 3.07
599 600 0.246360 ACGATTGTGCTCCGTCATGA 59.754 50.000 0.00 0.00 29.82 3.07
600 601 1.337728 ACGATTGTGCTCCGTCATGAA 60.338 47.619 0.00 0.00 29.82 2.57
601 602 1.325640 CGATTGTGCTCCGTCATGAAG 59.674 52.381 0.00 0.00 0.00 3.02
602 603 1.063174 GATTGTGCTCCGTCATGAAGC 59.937 52.381 10.38 10.38 0.00 3.86
603 604 0.035317 TTGTGCTCCGTCATGAAGCT 59.965 50.000 16.69 0.00 0.00 3.74
604 605 0.035317 TGTGCTCCGTCATGAAGCTT 59.965 50.000 16.69 0.00 0.00 3.74
605 606 0.445436 GTGCTCCGTCATGAAGCTTG 59.555 55.000 16.69 0.00 0.00 4.01
606 607 0.035317 TGCTCCGTCATGAAGCTTGT 59.965 50.000 16.69 0.00 0.00 3.16
607 608 0.445436 GCTCCGTCATGAAGCTTGTG 59.555 55.000 2.10 2.49 0.00 3.33
608 609 0.445436 CTCCGTCATGAAGCTTGTGC 59.555 55.000 2.10 0.00 40.05 4.57
618 619 4.481195 GCTTGTGCTTCACTGGGA 57.519 55.556 0.00 0.00 35.11 4.37
619 620 2.719376 GCTTGTGCTTCACTGGGAA 58.281 52.632 0.00 0.00 35.11 3.97
620 621 1.032014 GCTTGTGCTTCACTGGGAAA 58.968 50.000 0.00 0.00 34.44 3.13
621 622 1.269257 GCTTGTGCTTCACTGGGAAAC 60.269 52.381 0.00 0.00 34.44 2.78
622 623 2.023673 CTTGTGCTTCACTGGGAAACA 58.976 47.619 0.00 0.00 34.44 2.83
623 624 2.363306 TGTGCTTCACTGGGAAACAT 57.637 45.000 0.00 0.00 34.37 2.71
624 625 3.500448 TGTGCTTCACTGGGAAACATA 57.500 42.857 0.00 0.00 34.37 2.29
625 626 3.146066 TGTGCTTCACTGGGAAACATAC 58.854 45.455 0.00 0.00 34.37 2.39
626 627 3.181445 TGTGCTTCACTGGGAAACATACT 60.181 43.478 0.00 0.00 34.37 2.12
627 628 3.821033 GTGCTTCACTGGGAAACATACTT 59.179 43.478 0.00 0.00 34.37 2.24
628 629 4.278419 GTGCTTCACTGGGAAACATACTTT 59.722 41.667 0.00 0.00 34.37 2.66
629 630 4.278170 TGCTTCACTGGGAAACATACTTTG 59.722 41.667 0.00 0.00 34.44 2.77
630 631 4.798574 CTTCACTGGGAAACATACTTTGC 58.201 43.478 0.00 0.00 34.44 3.68
631 632 2.811431 TCACTGGGAAACATACTTTGCG 59.189 45.455 0.00 0.00 0.00 4.85
632 633 1.539827 ACTGGGAAACATACTTTGCGC 59.460 47.619 0.00 0.00 0.00 6.09
633 634 1.812571 CTGGGAAACATACTTTGCGCT 59.187 47.619 9.73 0.00 0.00 5.92
634 635 1.810151 TGGGAAACATACTTTGCGCTC 59.190 47.619 9.73 0.00 0.00 5.03
635 636 1.810151 GGGAAACATACTTTGCGCTCA 59.190 47.619 9.73 0.00 0.00 4.26
636 637 2.414161 GGGAAACATACTTTGCGCTCAC 60.414 50.000 9.73 0.00 0.00 3.51
637 638 2.495939 GAAACATACTTTGCGCTCACG 58.504 47.619 9.73 0.00 44.07 4.35
638 639 1.790755 AACATACTTTGCGCTCACGA 58.209 45.000 9.73 0.00 43.93 4.35
639 640 2.010145 ACATACTTTGCGCTCACGAT 57.990 45.000 9.73 0.00 43.93 3.73
640 641 1.660607 ACATACTTTGCGCTCACGATG 59.339 47.619 9.73 9.63 43.93 3.84
641 642 1.926510 CATACTTTGCGCTCACGATGA 59.073 47.619 9.73 0.00 43.93 2.92
642 643 2.073117 TACTTTGCGCTCACGATGAA 57.927 45.000 9.73 0.00 43.93 2.57
643 644 1.442769 ACTTTGCGCTCACGATGAAT 58.557 45.000 9.73 0.00 43.93 2.57
644 645 1.394917 ACTTTGCGCTCACGATGAATC 59.605 47.619 9.73 0.00 43.93 2.52
645 646 1.394572 CTTTGCGCTCACGATGAATCA 59.605 47.619 9.73 0.00 43.93 2.57
646 647 1.655484 TTGCGCTCACGATGAATCAT 58.345 45.000 9.73 0.00 43.93 2.45
647 648 2.507339 TGCGCTCACGATGAATCATA 57.493 45.000 9.73 0.00 43.93 2.15
648 649 2.127251 TGCGCTCACGATGAATCATAC 58.873 47.619 9.73 0.00 43.93 2.39
649 650 1.457303 GCGCTCACGATGAATCATACC 59.543 52.381 0.00 0.00 43.93 2.73
650 651 2.061773 CGCTCACGATGAATCATACCC 58.938 52.381 0.00 0.00 43.93 3.69
651 652 2.288457 CGCTCACGATGAATCATACCCT 60.288 50.000 0.00 0.00 43.93 4.34
652 653 3.733337 GCTCACGATGAATCATACCCTT 58.267 45.455 0.00 0.00 0.00 3.95
653 654 3.496130 GCTCACGATGAATCATACCCTTG 59.504 47.826 0.00 0.00 0.00 3.61
654 655 3.466836 TCACGATGAATCATACCCTTGC 58.533 45.455 0.00 0.00 0.00 4.01
655 656 2.549754 CACGATGAATCATACCCTTGCC 59.450 50.000 0.00 0.00 0.00 4.52
656 657 2.439507 ACGATGAATCATACCCTTGCCT 59.560 45.455 0.00 0.00 0.00 4.75
657 658 3.070018 CGATGAATCATACCCTTGCCTC 58.930 50.000 0.00 0.00 0.00 4.70
658 659 3.494924 CGATGAATCATACCCTTGCCTCA 60.495 47.826 0.00 0.00 0.00 3.86
659 660 3.281727 TGAATCATACCCTTGCCTCAC 57.718 47.619 0.00 0.00 0.00 3.51
660 661 2.092429 TGAATCATACCCTTGCCTCACC 60.092 50.000 0.00 0.00 0.00 4.02
661 662 1.898863 ATCATACCCTTGCCTCACCT 58.101 50.000 0.00 0.00 0.00 4.00
662 663 0.911769 TCATACCCTTGCCTCACCTG 59.088 55.000 0.00 0.00 0.00 4.00
663 664 0.749454 CATACCCTTGCCTCACCTGC 60.749 60.000 0.00 0.00 0.00 4.85
664 665 1.926426 ATACCCTTGCCTCACCTGCC 61.926 60.000 0.00 0.00 0.00 4.85
690 691 4.574527 CACACATGTGTTTTGCGAAAAA 57.425 36.364 28.64 0.00 42.83 1.94
691 692 4.322119 CACACATGTGTTTTGCGAAAAAC 58.678 39.130 28.64 22.56 42.83 2.43
692 693 3.990469 ACACATGTGTTTTGCGAAAAACA 59.010 34.783 27.01 27.01 44.74 2.83
698 699 4.574527 TGTTTTGCGAAAAACACACATG 57.425 36.364 27.01 0.00 44.80 3.21
699 700 3.990469 TGTTTTGCGAAAAACACACATGT 59.010 34.783 27.01 0.00 44.80 3.21
708 709 3.256936 CACACATGTGCTCCACCG 58.743 61.111 25.68 0.00 39.39 4.94
709 710 2.669569 ACACATGTGCTCCACCGC 60.670 61.111 25.68 0.00 32.73 5.68
710 711 3.792047 CACATGTGCTCCACCGCG 61.792 66.667 13.94 0.00 32.73 6.46
711 712 4.314440 ACATGTGCTCCACCGCGT 62.314 61.111 4.92 0.00 32.73 6.01
712 713 2.125713 CATGTGCTCCACCGCGTA 60.126 61.111 4.92 0.00 32.73 4.42
713 714 2.167219 CATGTGCTCCACCGCGTAG 61.167 63.158 4.92 0.00 32.73 3.51
714 715 4.735132 TGTGCTCCACCGCGTAGC 62.735 66.667 4.92 9.17 40.82 3.58
756 757 4.929819 TTTTCTTTACCCAGTTGCTTCC 57.070 40.909 0.00 0.00 0.00 3.46
757 758 3.876309 TTCTTTACCCAGTTGCTTCCT 57.124 42.857 0.00 0.00 0.00 3.36
758 759 3.876309 TCTTTACCCAGTTGCTTCCTT 57.124 42.857 0.00 0.00 0.00 3.36
759 760 3.486383 TCTTTACCCAGTTGCTTCCTTG 58.514 45.455 0.00 0.00 0.00 3.61
760 761 2.286365 TTACCCAGTTGCTTCCTTGG 57.714 50.000 0.00 0.00 0.00 3.61
761 762 1.440618 TACCCAGTTGCTTCCTTGGA 58.559 50.000 0.00 0.00 32.34 3.53
762 763 0.555769 ACCCAGTTGCTTCCTTGGAA 59.444 50.000 1.86 1.86 32.34 3.53
763 764 1.147817 ACCCAGTTGCTTCCTTGGAAT 59.852 47.619 2.24 0.00 32.34 3.01
764 765 1.547372 CCCAGTTGCTTCCTTGGAATG 59.453 52.381 2.24 0.00 32.34 2.67
765 766 2.517959 CCAGTTGCTTCCTTGGAATGA 58.482 47.619 2.24 0.00 32.34 2.57
766 767 2.229784 CCAGTTGCTTCCTTGGAATGAC 59.770 50.000 2.24 2.93 32.34 3.06
767 768 2.229784 CAGTTGCTTCCTTGGAATGACC 59.770 50.000 2.24 0.00 39.54 4.02
777 778 2.869101 TGGAATGACCATGTTTCCGA 57.131 45.000 0.00 0.00 44.64 4.55
778 779 2.432444 TGGAATGACCATGTTTCCGAC 58.568 47.619 0.00 0.00 44.64 4.79
779 780 2.039746 TGGAATGACCATGTTTCCGACT 59.960 45.455 0.00 0.00 44.64 4.18
780 781 2.420022 GGAATGACCATGTTTCCGACTG 59.580 50.000 0.00 0.00 38.79 3.51
781 782 1.453155 ATGACCATGTTTCCGACTGC 58.547 50.000 0.00 0.00 0.00 4.40
782 783 0.605319 TGACCATGTTTCCGACTGCC 60.605 55.000 0.00 0.00 0.00 4.85
783 784 0.605319 GACCATGTTTCCGACTGCCA 60.605 55.000 0.00 0.00 0.00 4.92
784 785 0.038166 ACCATGTTTCCGACTGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
785 786 0.452987 CCATGTTTCCGACTGCCATG 59.547 55.000 0.00 0.00 34.18 3.66
786 787 0.179156 CATGTTTCCGACTGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
787 788 1.315257 ATGTTTCCGACTGCCATGCC 61.315 55.000 0.00 0.00 0.00 4.40
788 789 1.675641 GTTTCCGACTGCCATGCCT 60.676 57.895 0.00 0.00 0.00 4.75
789 790 1.074775 TTTCCGACTGCCATGCCTT 59.925 52.632 0.00 0.00 0.00 4.35
790 791 0.960364 TTTCCGACTGCCATGCCTTC 60.960 55.000 0.00 0.00 0.00 3.46
791 792 2.046023 CCGACTGCCATGCCTTCA 60.046 61.111 0.00 0.00 0.00 3.02
792 793 2.401766 CCGACTGCCATGCCTTCAC 61.402 63.158 0.00 0.00 0.00 3.18
793 794 2.401766 CGACTGCCATGCCTTCACC 61.402 63.158 0.00 0.00 0.00 4.02
794 795 2.360350 ACTGCCATGCCTTCACCG 60.360 61.111 0.00 0.00 0.00 4.94
795 796 2.046023 CTGCCATGCCTTCACCGA 60.046 61.111 0.00 0.00 0.00 4.69
796 797 1.675310 CTGCCATGCCTTCACCGAA 60.675 57.895 0.00 0.00 0.00 4.30
797 798 1.651240 CTGCCATGCCTTCACCGAAG 61.651 60.000 0.00 0.00 39.17 3.79
798 799 3.056313 GCCATGCCTTCACCGAAGC 62.056 63.158 0.00 0.00 38.24 3.86
799 800 2.409870 CCATGCCTTCACCGAAGCC 61.410 63.158 0.00 0.00 38.24 4.35
800 801 2.044946 ATGCCTTCACCGAAGCCC 60.045 61.111 0.00 0.00 38.24 5.19
801 802 3.645268 ATGCCTTCACCGAAGCCCC 62.645 63.158 0.00 0.00 38.24 5.80
802 803 4.344865 GCCTTCACCGAAGCCCCA 62.345 66.667 0.00 0.00 38.24 4.96
803 804 2.434331 CCTTCACCGAAGCCCCAA 59.566 61.111 0.00 0.00 38.24 4.12
804 805 1.228429 CCTTCACCGAAGCCCCAAA 60.228 57.895 0.00 0.00 38.24 3.28
805 806 1.244019 CCTTCACCGAAGCCCCAAAG 61.244 60.000 0.00 0.00 38.24 2.77
806 807 0.537371 CTTCACCGAAGCCCCAAAGT 60.537 55.000 0.00 0.00 32.78 2.66
807 808 0.766131 TTCACCGAAGCCCCAAAGTA 59.234 50.000 0.00 0.00 0.00 2.24
808 809 0.766131 TCACCGAAGCCCCAAAGTAA 59.234 50.000 0.00 0.00 0.00 2.24
809 810 1.143277 TCACCGAAGCCCCAAAGTAAA 59.857 47.619 0.00 0.00 0.00 2.01
810 811 1.268625 CACCGAAGCCCCAAAGTAAAC 59.731 52.381 0.00 0.00 0.00 2.01
811 812 1.144298 ACCGAAGCCCCAAAGTAAACT 59.856 47.619 0.00 0.00 0.00 2.66
812 813 2.235891 CCGAAGCCCCAAAGTAAACTT 58.764 47.619 0.00 0.00 37.91 2.66
813 814 2.626266 CCGAAGCCCCAAAGTAAACTTT 59.374 45.455 2.24 2.24 46.23 2.66
814 815 3.069016 CCGAAGCCCCAAAGTAAACTTTT 59.931 43.478 5.36 0.00 43.07 2.27
815 816 4.048504 CGAAGCCCCAAAGTAAACTTTTG 58.951 43.478 5.36 2.89 43.07 2.44
816 817 4.440940 CGAAGCCCCAAAGTAAACTTTTGT 60.441 41.667 5.36 0.00 43.07 2.83
822 823 6.044046 CCCCAAAGTAAACTTTTGTTACCAC 58.956 40.000 5.36 0.00 43.07 4.16
833 834 6.569780 ACTTTTGTTACCACATTTCCAACTC 58.430 36.000 0.00 0.00 31.06 3.01
838 839 0.881118 CCACATTTCCAACTCCCACG 59.119 55.000 0.00 0.00 0.00 4.94
839 840 0.881118 CACATTTCCAACTCCCACGG 59.119 55.000 0.00 0.00 0.00 4.94
842 843 0.609131 ATTTCCAACTCCCACGGCAG 60.609 55.000 0.00 0.00 0.00 4.85
844 845 1.122632 TTCCAACTCCCACGGCAGTA 61.123 55.000 0.00 0.00 0.00 2.74
854 855 2.289195 CCCACGGCAGTACTTGTCTAAA 60.289 50.000 0.00 0.00 0.00 1.85
881 882 8.980481 ATTCCCCTTATTACACTAGAAACATG 57.020 34.615 0.00 0.00 0.00 3.21
882 883 7.504926 TCCCCTTATTACACTAGAAACATGT 57.495 36.000 0.00 0.00 0.00 3.21
883 884 8.612486 TCCCCTTATTACACTAGAAACATGTA 57.388 34.615 0.00 0.00 0.00 2.29
900 901 8.964476 AAACATGTATACAAGTATTCTCCTGG 57.036 34.615 13.72 0.00 0.00 4.45
957 969 8.697507 ATTAAGAAAGTATAAGCATTCCCCTG 57.302 34.615 0.00 0.00 0.00 4.45
975 991 5.189145 TCCCCTGACACTAAGAAAGTATTCC 59.811 44.000 0.00 0.00 35.76 3.01
1020 1036 2.493030 CCCGTCGCGACTTACCAT 59.507 61.111 33.94 0.00 0.00 3.55
1114 1130 2.034532 TAGTGTCGGGTCTCGCCA 59.965 61.111 0.00 0.00 39.65 5.69
1146 1162 1.129917 TCGTCTCCCTCCTCGTATCT 58.870 55.000 0.00 0.00 0.00 1.98
1205 1221 3.110178 GTTCGACGCTGTTCCCCG 61.110 66.667 0.00 0.00 0.00 5.73
1206 1222 4.367023 TTCGACGCTGTTCCCCGG 62.367 66.667 0.00 0.00 0.00 5.73
1370 1386 2.890371 GTACCACCTCGCCGTGAT 59.110 61.111 3.55 0.00 35.68 3.06
1506 1522 2.439156 GCAGGTGACATGGAGGCC 60.439 66.667 0.00 0.00 0.00 5.19
1514 1530 2.244117 GACATGGAGGCCGCTCTCAA 62.244 60.000 6.40 0.00 35.58 3.02
1515 1531 1.817099 CATGGAGGCCGCTCTCAAC 60.817 63.158 6.40 0.00 35.58 3.18
1727 1743 3.007635 TCTGCTATATGATGCATGCTGC 58.992 45.455 20.33 11.20 45.29 5.25
1771 1787 3.486875 GCTTAACGTCTGTGTTTGCAACT 60.487 43.478 0.00 0.00 33.38 3.16
1899 1915 0.320946 TTGTTCGGAATGGACGACCC 60.321 55.000 0.34 0.00 40.45 4.46
1917 1933 3.942115 GACCCAATTCTGCTCTTAACCTC 59.058 47.826 0.00 0.00 0.00 3.85
1989 2005 1.745087 CTTAATGTCATTGCGGCCTGT 59.255 47.619 8.39 0.00 0.00 4.00
2209 2225 4.264253 CATGATCAAAGGCTGTGGAGTTA 58.736 43.478 4.51 0.00 0.00 2.24
2211 2227 4.922206 TGATCAAAGGCTGTGGAGTTATT 58.078 39.130 4.51 0.00 0.00 1.40
2215 2231 0.625849 AGGCTGTGGAGTTATTGGGG 59.374 55.000 0.00 0.00 0.00 4.96
2217 2233 1.005450 GGCTGTGGAGTTATTGGGGAA 59.995 52.381 0.00 0.00 0.00 3.97
2383 2399 2.373502 AGAGGTTTCCAGAGTGAAAGGG 59.626 50.000 0.00 0.00 35.04 3.95
2577 2593 4.137543 AGAAAGCAGAAGTGAAACCGAAT 58.862 39.130 0.00 0.00 37.80 3.34
2595 2611 1.739067 ATCGCTACACCTTTCTTGCC 58.261 50.000 0.00 0.00 0.00 4.52
2825 2847 1.975660 TTGCTAAGTGCTTCCCGTTT 58.024 45.000 0.00 0.00 43.37 3.60
2892 2914 3.388024 TGTCCCTAGATCCAGAAAATCGG 59.612 47.826 0.00 0.00 0.00 4.18
3043 3065 5.005971 GGCTAAATGTTGCAAATACATGCTG 59.994 40.000 0.00 0.00 46.54 4.41
3276 3303 1.090625 CGTGTTCAAACCACCGACCA 61.091 55.000 0.00 0.00 0.00 4.02
3315 3342 6.151691 TGTACACGTGGAAAATACTACTGAC 58.848 40.000 21.57 0.00 0.00 3.51
3331 3358 0.032952 TGACGTGACACCAGTTAGGC 59.967 55.000 0.00 0.00 43.14 3.93
3418 3445 9.941325 TTTAATTACAATTCACAAATGCATCCT 57.059 25.926 0.00 0.00 0.00 3.24
3498 3525 4.898320 ACCCTTCCTTTTCAATGAAATGC 58.102 39.130 9.41 0.00 31.34 3.56
3502 3529 5.107375 CCTTCCTTTTCAATGAAATGCAACG 60.107 40.000 9.41 0.22 31.34 4.10
3507 3534 4.449870 TTCAATGAAATGCAACGCAAAC 57.550 36.364 0.00 0.00 43.62 2.93
3529 3557 6.019896 ACGTTTTTGCATTTTCTCGAAAAG 57.980 33.333 10.21 4.76 42.72 2.27
3591 3622 8.964476 ATAGTTAGTCCAGGTGTGATATTTTG 57.036 34.615 0.00 0.00 0.00 2.44
3595 3626 6.126863 AGTCCAGGTGTGATATTTTGAAGA 57.873 37.500 0.00 0.00 0.00 2.87
3613 3644 7.482654 TTGAAGATACTCAGTGTGAAAAGTG 57.517 36.000 0.00 0.00 0.00 3.16
3739 3770 5.670792 ATCAAGTTAGACGACCCAACATA 57.329 39.130 0.00 0.00 0.00 2.29
3848 3879 3.243128 GTGATTAACCGCCACCACT 57.757 52.632 0.00 0.00 0.00 4.00
3871 3902 7.858382 CACTGATTGACGTCTTTATAGGAGTAG 59.142 40.741 17.92 3.00 0.00 2.57
4020 4051 0.606673 GTGCCAAGAGGTCCTGGTTC 60.607 60.000 0.00 0.00 37.19 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.247736 TCGAGAGGAAGCCAAGAAGC 59.752 55.000 0.00 0.00 0.00 3.86
1 2 2.615869 CTTCGAGAGGAAGCCAAGAAG 58.384 52.381 0.00 0.00 45.21 2.85
2 3 2.751166 CTTCGAGAGGAAGCCAAGAA 57.249 50.000 0.00 0.00 45.21 2.52
10 11 3.895656 TCTTGGTTTCTCTTCGAGAGGAA 59.104 43.478 10.65 6.74 42.54 3.36
11 12 3.497332 TCTTGGTTTCTCTTCGAGAGGA 58.503 45.455 10.65 1.46 42.54 3.71
12 13 3.257127 ACTCTTGGTTTCTCTTCGAGAGG 59.743 47.826 10.65 0.00 42.54 3.69
13 14 4.233789 CACTCTTGGTTTCTCTTCGAGAG 58.766 47.826 0.00 0.00 43.64 3.20
14 15 3.637229 ACACTCTTGGTTTCTCTTCGAGA 59.363 43.478 0.00 0.00 36.86 4.04
15 16 3.738282 CACACTCTTGGTTTCTCTTCGAG 59.262 47.826 0.00 0.00 0.00 4.04
16 17 3.717707 CACACTCTTGGTTTCTCTTCGA 58.282 45.455 0.00 0.00 0.00 3.71
17 18 2.221981 GCACACTCTTGGTTTCTCTTCG 59.778 50.000 0.00 0.00 0.00 3.79
18 19 3.206150 TGCACACTCTTGGTTTCTCTTC 58.794 45.455 0.00 0.00 0.00 2.87
19 20 3.281727 TGCACACTCTTGGTTTCTCTT 57.718 42.857 0.00 0.00 0.00 2.85
20 21 3.498774 ATGCACACTCTTGGTTTCTCT 57.501 42.857 0.00 0.00 0.00 3.10
21 22 4.574599 AAATGCACACTCTTGGTTTCTC 57.425 40.909 0.00 0.00 0.00 2.87
22 23 4.402155 TCAAAATGCACACTCTTGGTTTCT 59.598 37.500 0.00 0.00 0.00 2.52
23 24 4.504097 GTCAAAATGCACACTCTTGGTTTC 59.496 41.667 0.00 0.00 0.00 2.78
24 25 4.081752 TGTCAAAATGCACACTCTTGGTTT 60.082 37.500 0.00 0.00 0.00 3.27
25 26 3.446873 TGTCAAAATGCACACTCTTGGTT 59.553 39.130 0.00 0.00 0.00 3.67
26 27 3.023119 TGTCAAAATGCACACTCTTGGT 58.977 40.909 0.00 0.00 0.00 3.67
27 28 3.713858 TGTCAAAATGCACACTCTTGG 57.286 42.857 0.00 0.00 0.00 3.61
38 39 3.936453 CCATTTCCCAGCATGTCAAAATG 59.064 43.478 0.00 4.73 37.22 2.32
39 40 3.839490 TCCATTTCCCAGCATGTCAAAAT 59.161 39.130 0.00 0.00 0.00 1.82
40 41 3.237746 TCCATTTCCCAGCATGTCAAAA 58.762 40.909 0.00 0.00 0.00 2.44
41 42 2.886913 TCCATTTCCCAGCATGTCAAA 58.113 42.857 0.00 0.00 0.00 2.69
42 43 2.601240 TCCATTTCCCAGCATGTCAA 57.399 45.000 0.00 0.00 0.00 3.18
43 44 2.601240 TTCCATTTCCCAGCATGTCA 57.399 45.000 0.00 0.00 0.00 3.58
44 45 3.091545 TCTTTCCATTTCCCAGCATGTC 58.908 45.455 0.00 0.00 0.00 3.06
45 46 3.173953 TCTTTCCATTTCCCAGCATGT 57.826 42.857 0.00 0.00 0.00 3.21
46 47 4.748277 AATCTTTCCATTTCCCAGCATG 57.252 40.909 0.00 0.00 0.00 4.06
47 48 4.343239 GCTAATCTTTCCATTTCCCAGCAT 59.657 41.667 0.00 0.00 0.00 3.79
48 49 3.701040 GCTAATCTTTCCATTTCCCAGCA 59.299 43.478 0.00 0.00 0.00 4.41
49 50 3.956848 AGCTAATCTTTCCATTTCCCAGC 59.043 43.478 0.00 0.00 0.00 4.85
50 51 5.298777 CAGAGCTAATCTTTCCATTTCCCAG 59.701 44.000 0.00 0.00 35.47 4.45
51 52 5.195940 CAGAGCTAATCTTTCCATTTCCCA 58.804 41.667 0.00 0.00 35.47 4.37
52 53 5.196695 ACAGAGCTAATCTTTCCATTTCCC 58.803 41.667 0.00 0.00 35.47 3.97
53 54 6.765915 AACAGAGCTAATCTTTCCATTTCC 57.234 37.500 0.00 0.00 35.47 3.13
54 55 8.084684 ACAAAACAGAGCTAATCTTTCCATTTC 58.915 33.333 0.00 0.00 35.47 2.17
55 56 7.955918 ACAAAACAGAGCTAATCTTTCCATTT 58.044 30.769 0.00 0.00 35.47 2.32
56 57 7.530426 ACAAAACAGAGCTAATCTTTCCATT 57.470 32.000 0.00 0.00 35.47 3.16
57 58 7.885399 AGTACAAAACAGAGCTAATCTTTCCAT 59.115 33.333 0.00 0.00 35.47 3.41
58 59 7.224297 AGTACAAAACAGAGCTAATCTTTCCA 58.776 34.615 0.00 0.00 35.47 3.53
59 60 7.148390 GGAGTACAAAACAGAGCTAATCTTTCC 60.148 40.741 0.00 0.00 35.47 3.13
60 61 7.148390 GGGAGTACAAAACAGAGCTAATCTTTC 60.148 40.741 0.00 0.00 35.47 2.62
61 62 6.655425 GGGAGTACAAAACAGAGCTAATCTTT 59.345 38.462 0.00 0.00 35.47 2.52
62 63 6.013293 AGGGAGTACAAAACAGAGCTAATCTT 60.013 38.462 0.00 0.00 35.47 2.40
63 64 5.485708 AGGGAGTACAAAACAGAGCTAATCT 59.514 40.000 0.00 0.00 39.56 2.40
64 65 5.735766 AGGGAGTACAAAACAGAGCTAATC 58.264 41.667 0.00 0.00 0.00 1.75
65 66 5.763876 AGGGAGTACAAAACAGAGCTAAT 57.236 39.130 0.00 0.00 0.00 1.73
66 67 5.071250 TGAAGGGAGTACAAAACAGAGCTAA 59.929 40.000 0.00 0.00 0.00 3.09
67 68 4.591498 TGAAGGGAGTACAAAACAGAGCTA 59.409 41.667 0.00 0.00 0.00 3.32
68 69 3.391296 TGAAGGGAGTACAAAACAGAGCT 59.609 43.478 0.00 0.00 0.00 4.09
69 70 3.740115 TGAAGGGAGTACAAAACAGAGC 58.260 45.455 0.00 0.00 0.00 4.09
70 71 4.962155 ACTGAAGGGAGTACAAAACAGAG 58.038 43.478 0.00 0.00 0.00 3.35
71 72 5.130477 AGAACTGAAGGGAGTACAAAACAGA 59.870 40.000 0.00 0.00 0.00 3.41
72 73 5.368989 AGAACTGAAGGGAGTACAAAACAG 58.631 41.667 0.00 0.00 0.00 3.16
73 74 5.367945 AGAACTGAAGGGAGTACAAAACA 57.632 39.130 0.00 0.00 0.00 2.83
74 75 6.694877 AAAGAACTGAAGGGAGTACAAAAC 57.305 37.500 0.00 0.00 0.00 2.43
75 76 7.712204 AAAAAGAACTGAAGGGAGTACAAAA 57.288 32.000 0.00 0.00 0.00 2.44
76 77 8.050930 AGTAAAAAGAACTGAAGGGAGTACAAA 58.949 33.333 0.00 0.00 0.00 2.83
77 78 7.571025 AGTAAAAAGAACTGAAGGGAGTACAA 58.429 34.615 0.00 0.00 0.00 2.41
78 79 7.070821 AGAGTAAAAAGAACTGAAGGGAGTACA 59.929 37.037 0.00 0.00 0.00 2.90
79 80 7.385478 CAGAGTAAAAAGAACTGAAGGGAGTAC 59.615 40.741 0.00 0.00 0.00 2.73
80 81 7.442656 CAGAGTAAAAAGAACTGAAGGGAGTA 58.557 38.462 0.00 0.00 0.00 2.59
81 82 6.292150 CAGAGTAAAAAGAACTGAAGGGAGT 58.708 40.000 0.00 0.00 0.00 3.85
82 83 5.180304 GCAGAGTAAAAAGAACTGAAGGGAG 59.820 44.000 0.00 0.00 0.00 4.30
83 84 5.063880 GCAGAGTAAAAAGAACTGAAGGGA 58.936 41.667 0.00 0.00 0.00 4.20
84 85 4.821805 TGCAGAGTAAAAAGAACTGAAGGG 59.178 41.667 0.00 0.00 0.00 3.95
85 86 6.566197 ATGCAGAGTAAAAAGAACTGAAGG 57.434 37.500 0.00 0.00 0.00 3.46
160 161 6.229936 AGCATGGCAGATGTTGATATTTTT 57.770 33.333 0.00 0.00 0.00 1.94
161 162 5.864418 AGCATGGCAGATGTTGATATTTT 57.136 34.783 0.00 0.00 0.00 1.82
162 163 6.964807 TTAGCATGGCAGATGTTGATATTT 57.035 33.333 0.00 0.00 0.00 1.40
163 164 6.548622 ACTTTAGCATGGCAGATGTTGATATT 59.451 34.615 0.00 0.00 0.00 1.28
164 165 6.066690 ACTTTAGCATGGCAGATGTTGATAT 58.933 36.000 0.00 0.00 0.00 1.63
165 166 5.439721 ACTTTAGCATGGCAGATGTTGATA 58.560 37.500 0.00 0.00 0.00 2.15
166 167 4.275810 ACTTTAGCATGGCAGATGTTGAT 58.724 39.130 0.00 0.00 0.00 2.57
167 168 3.689347 ACTTTAGCATGGCAGATGTTGA 58.311 40.909 0.00 0.00 0.00 3.18
168 169 4.445452 AACTTTAGCATGGCAGATGTTG 57.555 40.909 0.00 0.00 0.00 3.33
169 170 6.828273 TGTATAACTTTAGCATGGCAGATGTT 59.172 34.615 0.00 0.00 0.00 2.71
170 171 6.356556 TGTATAACTTTAGCATGGCAGATGT 58.643 36.000 0.00 0.00 0.00 3.06
171 172 6.866010 TGTATAACTTTAGCATGGCAGATG 57.134 37.500 0.00 0.00 0.00 2.90
172 173 9.745018 ATATTGTATAACTTTAGCATGGCAGAT 57.255 29.630 0.00 0.00 0.00 2.90
173 174 9.002600 CATATTGTATAACTTTAGCATGGCAGA 57.997 33.333 0.00 0.00 0.00 4.26
174 175 9.002600 TCATATTGTATAACTTTAGCATGGCAG 57.997 33.333 0.00 0.00 0.00 4.85
175 176 8.916628 TCATATTGTATAACTTTAGCATGGCA 57.083 30.769 0.00 0.00 0.00 4.92
227 228 9.811995 CCAACATTCACAATCTGAAATCAATAT 57.188 29.630 0.00 0.00 42.37 1.28
228 229 8.805175 ACCAACATTCACAATCTGAAATCAATA 58.195 29.630 0.00 0.00 42.37 1.90
229 230 7.673180 ACCAACATTCACAATCTGAAATCAAT 58.327 30.769 0.00 0.00 42.37 2.57
230 231 7.053316 ACCAACATTCACAATCTGAAATCAA 57.947 32.000 0.00 0.00 42.37 2.57
231 232 6.653526 ACCAACATTCACAATCTGAAATCA 57.346 33.333 0.00 0.00 42.37 2.57
232 233 7.820648 AGTACCAACATTCACAATCTGAAATC 58.179 34.615 0.00 0.00 42.37 2.17
233 234 7.765695 AGTACCAACATTCACAATCTGAAAT 57.234 32.000 0.00 0.00 42.37 2.17
234 235 7.581213 AAGTACCAACATTCACAATCTGAAA 57.419 32.000 0.00 0.00 42.37 2.69
235 236 7.581213 AAAGTACCAACATTCACAATCTGAA 57.419 32.000 0.00 0.00 43.28 3.02
236 237 7.581213 AAAAGTACCAACATTCACAATCTGA 57.419 32.000 0.00 0.00 0.00 3.27
264 265 9.699703 GCCTTGTAAAATTTGACCAACTTTATA 57.300 29.630 3.10 0.00 0.00 0.98
265 266 8.428852 AGCCTTGTAAAATTTGACCAACTTTAT 58.571 29.630 3.10 0.00 0.00 1.40
266 267 7.787028 AGCCTTGTAAAATTTGACCAACTTTA 58.213 30.769 3.10 0.00 0.00 1.85
267 268 6.649155 AGCCTTGTAAAATTTGACCAACTTT 58.351 32.000 3.10 0.00 0.00 2.66
268 269 6.233905 AGCCTTGTAAAATTTGACCAACTT 57.766 33.333 3.10 0.00 0.00 2.66
269 270 5.869649 AGCCTTGTAAAATTTGACCAACT 57.130 34.783 3.10 0.00 0.00 3.16
270 271 6.019075 GTCAAGCCTTGTAAAATTTGACCAAC 60.019 38.462 4.04 0.00 35.88 3.77
271 272 6.045955 GTCAAGCCTTGTAAAATTTGACCAA 58.954 36.000 4.04 1.07 35.88 3.67
272 273 5.362430 AGTCAAGCCTTGTAAAATTTGACCA 59.638 36.000 4.04 0.00 39.37 4.02
273 274 5.842907 AGTCAAGCCTTGTAAAATTTGACC 58.157 37.500 4.04 0.00 39.37 4.02
274 275 6.978080 TGAAGTCAAGCCTTGTAAAATTTGAC 59.022 34.615 4.04 0.00 39.10 3.18
275 276 7.106439 TGAAGTCAAGCCTTGTAAAATTTGA 57.894 32.000 4.04 0.00 0.00 2.69
276 277 6.980397 ACTGAAGTCAAGCCTTGTAAAATTTG 59.020 34.615 4.04 0.00 0.00 2.32
277 278 7.112452 ACTGAAGTCAAGCCTTGTAAAATTT 57.888 32.000 4.04 0.00 0.00 1.82
278 279 6.715347 ACTGAAGTCAAGCCTTGTAAAATT 57.285 33.333 4.04 0.00 0.00 1.82
279 280 6.319141 GACTGAAGTCAAGCCTTGTAAAAT 57.681 37.500 4.04 0.00 44.18 1.82
280 281 5.751243 GACTGAAGTCAAGCCTTGTAAAA 57.249 39.130 4.04 0.00 44.18 1.52
293 294 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
294 295 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
295 296 8.136057 AGTTCGCATATAAGATTTGACTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
296 297 9.594478 TTAGTTCGCATATAAGATTTGACTGAA 57.406 29.630 0.00 0.00 0.00 3.02
297 298 9.594478 TTTAGTTCGCATATAAGATTTGACTGA 57.406 29.630 0.00 0.00 0.00 3.41
304 305 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
305 306 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
306 307 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
307 308 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
308 309 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
309 310 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
310 311 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
311 312 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
312 313 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
313 314 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
314 315 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
315 316 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
316 317 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
317 318 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
318 319 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
319 320 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
320 321 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
321 322 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
322 323 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
323 324 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
324 325 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
325 326 0.397254 CATGTACTCCCTCCGGTCCT 60.397 60.000 0.00 0.00 0.00 3.85
326 327 0.686769 ACATGTACTCCCTCCGGTCC 60.687 60.000 0.00 0.00 0.00 4.46
327 328 1.192428 AACATGTACTCCCTCCGGTC 58.808 55.000 0.00 0.00 0.00 4.79
328 329 1.652947 AAACATGTACTCCCTCCGGT 58.347 50.000 0.00 0.00 0.00 5.28
329 330 2.781681 AAAACATGTACTCCCTCCGG 57.218 50.000 0.00 0.00 0.00 5.14
346 347 2.999331 GATCACCCCAGGATCGAAAAA 58.001 47.619 0.00 0.00 32.62 1.94
347 348 2.710096 GATCACCCCAGGATCGAAAA 57.290 50.000 0.00 0.00 32.62 2.29
352 353 1.974236 AGAATCGATCACCCCAGGATC 59.026 52.381 0.00 0.00 38.20 3.36
353 354 2.109229 AGAATCGATCACCCCAGGAT 57.891 50.000 0.00 0.00 0.00 3.24
354 355 1.879575 AAGAATCGATCACCCCAGGA 58.120 50.000 0.00 0.00 0.00 3.86
355 356 2.292267 CAAAGAATCGATCACCCCAGG 58.708 52.381 0.00 0.00 0.00 4.45
356 357 2.991250 ACAAAGAATCGATCACCCCAG 58.009 47.619 0.00 0.00 0.00 4.45
357 358 3.433306 AACAAAGAATCGATCACCCCA 57.567 42.857 0.00 0.00 0.00 4.96
358 359 3.673323 GCAAACAAAGAATCGATCACCCC 60.673 47.826 0.00 0.00 0.00 4.95
359 360 3.057596 TGCAAACAAAGAATCGATCACCC 60.058 43.478 0.00 0.00 0.00 4.61
360 361 4.159377 TGCAAACAAAGAATCGATCACC 57.841 40.909 0.00 0.00 0.00 4.02
376 377 7.255660 CCCCTTTATTAGTACACAAGTTGCAAA 60.256 37.037 0.00 0.00 0.00 3.68
377 378 6.207810 CCCCTTTATTAGTACACAAGTTGCAA 59.792 38.462 1.81 0.00 0.00 4.08
378 379 5.708230 CCCCTTTATTAGTACACAAGTTGCA 59.292 40.000 1.81 0.00 0.00 4.08
379 380 5.708697 ACCCCTTTATTAGTACACAAGTTGC 59.291 40.000 1.81 0.00 0.00 4.17
380 381 7.229907 ACAACCCCTTTATTAGTACACAAGTTG 59.770 37.037 0.00 0.00 35.63 3.16
381 382 7.292319 ACAACCCCTTTATTAGTACACAAGTT 58.708 34.615 0.00 0.00 0.00 2.66
382 383 6.844829 ACAACCCCTTTATTAGTACACAAGT 58.155 36.000 0.00 0.00 0.00 3.16
383 384 8.889717 CATACAACCCCTTTATTAGTACACAAG 58.110 37.037 0.00 0.00 0.00 3.16
384 385 8.384718 ACATACAACCCCTTTATTAGTACACAA 58.615 33.333 0.00 0.00 0.00 3.33
385 386 7.920227 ACATACAACCCCTTTATTAGTACACA 58.080 34.615 0.00 0.00 0.00 3.72
386 387 9.889128 TTACATACAACCCCTTTATTAGTACAC 57.111 33.333 0.00 0.00 0.00 2.90
390 391 7.555195 GCACTTACATACAACCCCTTTATTAGT 59.445 37.037 0.00 0.00 0.00 2.24
391 392 7.773690 AGCACTTACATACAACCCCTTTATTAG 59.226 37.037 0.00 0.00 0.00 1.73
392 393 7.635648 AGCACTTACATACAACCCCTTTATTA 58.364 34.615 0.00 0.00 0.00 0.98
393 394 6.490492 AGCACTTACATACAACCCCTTTATT 58.510 36.000 0.00 0.00 0.00 1.40
394 395 6.074698 AGCACTTACATACAACCCCTTTAT 57.925 37.500 0.00 0.00 0.00 1.40
395 396 5.508280 AGCACTTACATACAACCCCTTTA 57.492 39.130 0.00 0.00 0.00 1.85
396 397 4.382386 AGCACTTACATACAACCCCTTT 57.618 40.909 0.00 0.00 0.00 3.11
397 398 4.382386 AAGCACTTACATACAACCCCTT 57.618 40.909 0.00 0.00 0.00 3.95
398 399 4.324022 GGTAAGCACTTACATACAACCCCT 60.324 45.833 19.32 0.00 45.32 4.79
399 400 3.943381 GGTAAGCACTTACATACAACCCC 59.057 47.826 19.32 0.00 45.32 4.95
400 401 3.943381 GGGTAAGCACTTACATACAACCC 59.057 47.826 19.32 10.32 45.32 4.11
401 402 4.840271 AGGGTAAGCACTTACATACAACC 58.160 43.478 19.32 11.38 45.32 3.77
402 403 4.565564 CGAGGGTAAGCACTTACATACAAC 59.434 45.833 19.32 3.98 45.32 3.32
403 404 4.221262 ACGAGGGTAAGCACTTACATACAA 59.779 41.667 19.32 0.00 45.32 2.41
404 405 3.765511 ACGAGGGTAAGCACTTACATACA 59.234 43.478 19.32 0.00 45.32 2.29
405 406 4.097589 AGACGAGGGTAAGCACTTACATAC 59.902 45.833 19.32 10.55 45.32 2.39
406 407 4.275810 AGACGAGGGTAAGCACTTACATA 58.724 43.478 19.32 0.00 45.32 2.29
407 408 3.097614 AGACGAGGGTAAGCACTTACAT 58.902 45.455 19.32 9.35 45.32 2.29
408 409 2.522185 AGACGAGGGTAAGCACTTACA 58.478 47.619 19.32 0.00 45.32 2.41
409 410 3.589495 AAGACGAGGGTAAGCACTTAC 57.411 47.619 11.34 11.34 43.40 2.34
410 411 3.129988 GCTAAGACGAGGGTAAGCACTTA 59.870 47.826 0.00 0.00 30.76 2.24
411 412 2.094130 GCTAAGACGAGGGTAAGCACTT 60.094 50.000 0.00 0.00 30.76 3.16
412 413 1.477295 GCTAAGACGAGGGTAAGCACT 59.523 52.381 0.00 0.00 30.76 4.40
413 414 1.203994 TGCTAAGACGAGGGTAAGCAC 59.796 52.381 0.00 0.00 33.86 4.40
414 415 1.552578 TGCTAAGACGAGGGTAAGCA 58.447 50.000 0.00 0.00 35.41 3.91
415 416 2.892784 ATGCTAAGACGAGGGTAAGC 57.107 50.000 0.00 0.00 0.00 3.09
416 417 3.570550 AGCTATGCTAAGACGAGGGTAAG 59.429 47.826 0.00 0.00 36.99 2.34
417 418 3.563223 AGCTATGCTAAGACGAGGGTAA 58.437 45.455 0.00 0.00 36.99 2.85
418 419 3.225177 AGCTATGCTAAGACGAGGGTA 57.775 47.619 0.00 0.00 36.99 3.69
419 420 2.074729 AGCTATGCTAAGACGAGGGT 57.925 50.000 0.00 0.00 36.99 4.34
420 421 2.362397 TCAAGCTATGCTAAGACGAGGG 59.638 50.000 0.00 0.00 38.25 4.30
421 422 3.717400 TCAAGCTATGCTAAGACGAGG 57.283 47.619 0.00 0.00 38.25 4.63
422 423 4.926244 TCTTCAAGCTATGCTAAGACGAG 58.074 43.478 0.00 0.00 38.25 4.18
423 424 4.399618 ACTCTTCAAGCTATGCTAAGACGA 59.600 41.667 0.00 2.44 38.25 4.20
424 425 4.677584 ACTCTTCAAGCTATGCTAAGACG 58.322 43.478 0.00 0.00 38.25 4.18
425 426 5.655488 TGACTCTTCAAGCTATGCTAAGAC 58.345 41.667 0.00 0.00 38.25 3.01
426 427 5.921962 TGACTCTTCAAGCTATGCTAAGA 57.078 39.130 0.00 5.15 38.25 2.10
438 439 4.934001 GTCTGCATCATCTTGACTCTTCAA 59.066 41.667 0.00 0.00 39.55 2.69
439 440 4.020839 TGTCTGCATCATCTTGACTCTTCA 60.021 41.667 0.00 0.00 0.00 3.02
440 441 4.502016 TGTCTGCATCATCTTGACTCTTC 58.498 43.478 0.00 0.00 0.00 2.87
441 442 4.548451 TGTCTGCATCATCTTGACTCTT 57.452 40.909 0.00 0.00 0.00 2.85
442 443 4.757019 ATGTCTGCATCATCTTGACTCT 57.243 40.909 0.00 0.00 0.00 3.24
455 456 0.803380 CTCGATGCGTGATGTCTGCA 60.803 55.000 0.00 3.67 43.67 4.41
456 457 1.485838 CCTCGATGCGTGATGTCTGC 61.486 60.000 0.00 0.00 0.00 4.26
457 458 1.485838 GCCTCGATGCGTGATGTCTG 61.486 60.000 0.00 0.00 0.00 3.51
458 459 1.227089 GCCTCGATGCGTGATGTCT 60.227 57.895 0.00 0.00 0.00 3.41
459 460 2.240500 GGCCTCGATGCGTGATGTC 61.241 63.158 6.60 0.00 0.00 3.06
460 461 2.202932 GGCCTCGATGCGTGATGT 60.203 61.111 6.60 0.00 0.00 3.06
461 462 3.333189 CGGCCTCGATGCGTGATG 61.333 66.667 6.60 0.00 39.00 3.07
462 463 3.527427 TCGGCCTCGATGCGTGAT 61.527 61.111 6.60 0.00 40.88 3.06
471 472 1.884926 GCCTTGAAGATCGGCCTCG 60.885 63.158 0.00 0.00 37.86 4.63
472 473 1.884926 CGCCTTGAAGATCGGCCTC 60.885 63.158 0.00 0.00 40.70 4.70
473 474 2.187946 CGCCTTGAAGATCGGCCT 59.812 61.111 0.00 0.00 40.70 5.19
474 475 3.577313 GCGCCTTGAAGATCGGCC 61.577 66.667 0.00 0.00 40.70 6.13
475 476 2.512515 AGCGCCTTGAAGATCGGC 60.513 61.111 2.29 0.00 40.40 5.54
476 477 1.142748 AGAGCGCCTTGAAGATCGG 59.857 57.895 2.29 0.00 0.00 4.18
477 478 1.760268 GCAGAGCGCCTTGAAGATCG 61.760 60.000 2.29 0.00 32.94 3.69
478 479 0.742281 TGCAGAGCGCCTTGAAGATC 60.742 55.000 2.29 0.00 41.33 2.75
479 480 0.107312 ATGCAGAGCGCCTTGAAGAT 60.107 50.000 2.29 0.00 41.33 2.40
480 481 0.742281 GATGCAGAGCGCCTTGAAGA 60.742 55.000 2.29 0.00 41.33 2.87
481 482 0.743701 AGATGCAGAGCGCCTTGAAG 60.744 55.000 2.29 0.00 41.33 3.02
482 483 0.536724 TAGATGCAGAGCGCCTTGAA 59.463 50.000 2.29 0.00 41.33 2.69
483 484 0.536724 TTAGATGCAGAGCGCCTTGA 59.463 50.000 2.29 0.00 41.33 3.02
484 485 0.654683 GTTAGATGCAGAGCGCCTTG 59.345 55.000 2.29 3.65 41.33 3.61
485 486 0.807667 CGTTAGATGCAGAGCGCCTT 60.808 55.000 2.29 0.00 41.33 4.35
486 487 1.227089 CGTTAGATGCAGAGCGCCT 60.227 57.895 2.29 0.00 41.33 5.52
487 488 1.519455 ACGTTAGATGCAGAGCGCC 60.519 57.895 2.29 0.00 41.33 6.53
488 489 1.633171 CACGTTAGATGCAGAGCGC 59.367 57.895 0.00 0.00 42.89 5.92
489 490 1.148157 CCCACGTTAGATGCAGAGCG 61.148 60.000 0.00 0.00 0.00 5.03
490 491 0.811616 CCCCACGTTAGATGCAGAGC 60.812 60.000 0.00 0.00 0.00 4.09
491 492 0.811616 GCCCCACGTTAGATGCAGAG 60.812 60.000 0.00 0.00 0.00 3.35
492 493 1.220749 GCCCCACGTTAGATGCAGA 59.779 57.895 0.00 0.00 0.00 4.26
493 494 2.173669 CGCCCCACGTTAGATGCAG 61.174 63.158 0.00 0.00 36.87 4.41
494 495 2.125310 CGCCCCACGTTAGATGCA 60.125 61.111 0.00 0.00 36.87 3.96
495 496 1.022451 TTTCGCCCCACGTTAGATGC 61.022 55.000 0.00 0.00 44.19 3.91
496 497 1.006832 CTTTCGCCCCACGTTAGATG 58.993 55.000 0.00 0.00 44.19 2.90
497 498 0.899720 TCTTTCGCCCCACGTTAGAT 59.100 50.000 0.00 0.00 44.19 1.98
498 499 0.680618 TTCTTTCGCCCCACGTTAGA 59.319 50.000 0.00 0.00 44.19 2.10
499 500 1.515081 TTTCTTTCGCCCCACGTTAG 58.485 50.000 0.00 0.00 44.19 2.34
500 501 1.964552 TTTTCTTTCGCCCCACGTTA 58.035 45.000 0.00 0.00 44.19 3.18
501 502 1.104630 TTTTTCTTTCGCCCCACGTT 58.895 45.000 0.00 0.00 44.19 3.99
502 503 2.796500 TTTTTCTTTCGCCCCACGT 58.204 47.368 0.00 0.00 44.19 4.49
542 543 6.016693 TCGGTGAAGCATATCAAACTGAAAAA 60.017 34.615 0.00 0.00 0.00 1.94
543 544 5.471797 TCGGTGAAGCATATCAAACTGAAAA 59.528 36.000 0.00 0.00 0.00 2.29
544 545 5.000591 TCGGTGAAGCATATCAAACTGAAA 58.999 37.500 0.00 0.00 0.00 2.69
545 546 4.574892 TCGGTGAAGCATATCAAACTGAA 58.425 39.130 0.00 0.00 0.00 3.02
546 547 4.200838 TCGGTGAAGCATATCAAACTGA 57.799 40.909 0.00 0.00 0.00 3.41
547 548 4.437390 GGTTCGGTGAAGCATATCAAACTG 60.437 45.833 4.03 0.00 39.49 3.16
548 549 3.689649 GGTTCGGTGAAGCATATCAAACT 59.310 43.478 4.03 0.00 39.49 2.66
549 550 3.438781 TGGTTCGGTGAAGCATATCAAAC 59.561 43.478 7.29 0.00 43.62 2.93
550 551 3.680490 TGGTTCGGTGAAGCATATCAAA 58.320 40.909 7.29 0.00 43.62 2.69
551 552 3.342377 TGGTTCGGTGAAGCATATCAA 57.658 42.857 7.29 0.00 43.62 2.57
552 553 3.342377 TTGGTTCGGTGAAGCATATCA 57.658 42.857 11.66 0.00 46.83 2.15
553 554 4.438744 CCTTTTGGTTCGGTGAAGCATATC 60.439 45.833 11.66 0.00 46.83 1.63
554 555 3.443681 CCTTTTGGTTCGGTGAAGCATAT 59.556 43.478 11.66 0.00 46.83 1.78
555 556 2.817258 CCTTTTGGTTCGGTGAAGCATA 59.183 45.455 11.66 5.22 46.83 3.14
556 557 1.613437 CCTTTTGGTTCGGTGAAGCAT 59.387 47.619 11.66 0.00 46.83 3.79
557 558 1.028905 CCTTTTGGTTCGGTGAAGCA 58.971 50.000 7.29 7.29 46.16 3.91
558 559 1.266989 CTCCTTTTGGTTCGGTGAAGC 59.733 52.381 1.98 1.98 40.03 3.86
559 560 1.266989 GCTCCTTTTGGTTCGGTGAAG 59.733 52.381 0.00 0.00 41.38 3.02
560 561 1.314730 GCTCCTTTTGGTTCGGTGAA 58.685 50.000 0.00 0.00 41.38 3.18
561 562 0.181587 TGCTCCTTTTGGTTCGGTGA 59.818 50.000 0.00 0.00 41.38 4.02
562 563 0.310854 GTGCTCCTTTTGGTTCGGTG 59.689 55.000 0.00 0.00 41.38 4.94
563 564 1.164041 CGTGCTCCTTTTGGTTCGGT 61.164 55.000 0.00 0.00 41.38 4.69
564 565 0.882927 TCGTGCTCCTTTTGGTTCGG 60.883 55.000 0.00 0.00 41.38 4.30
565 566 1.156736 ATCGTGCTCCTTTTGGTTCG 58.843 50.000 0.00 0.00 41.38 3.95
566 567 2.293399 ACAATCGTGCTCCTTTTGGTTC 59.707 45.455 0.00 0.00 41.38 3.62
567 568 2.034558 CACAATCGTGCTCCTTTTGGTT 59.965 45.455 0.00 0.00 37.30 3.67
568 569 1.608590 CACAATCGTGCTCCTTTTGGT 59.391 47.619 0.00 0.00 37.30 3.67
569 570 2.336554 CACAATCGTGCTCCTTTTGG 57.663 50.000 0.00 0.00 36.06 3.28
579 580 0.371301 CATGACGGAGCACAATCGTG 59.629 55.000 0.00 0.00 46.56 4.35
580 581 0.246360 TCATGACGGAGCACAATCGT 59.754 50.000 0.00 0.00 39.99 3.73
581 582 1.325640 CTTCATGACGGAGCACAATCG 59.674 52.381 0.00 0.00 0.00 3.34
582 583 1.063174 GCTTCATGACGGAGCACAATC 59.937 52.381 12.08 0.00 0.00 2.67
583 584 1.089920 GCTTCATGACGGAGCACAAT 58.910 50.000 12.08 0.00 0.00 2.71
584 585 0.035317 AGCTTCATGACGGAGCACAA 59.965 50.000 17.82 0.00 0.00 3.33
585 586 0.035317 AAGCTTCATGACGGAGCACA 59.965 50.000 17.82 0.00 0.00 4.57
586 587 0.445436 CAAGCTTCATGACGGAGCAC 59.555 55.000 17.82 0.00 0.00 4.40
587 588 0.035317 ACAAGCTTCATGACGGAGCA 59.965 50.000 17.82 0.00 0.00 4.26
588 589 0.445436 CACAAGCTTCATGACGGAGC 59.555 55.000 9.45 9.45 0.00 4.70
589 590 0.445436 GCACAAGCTTCATGACGGAG 59.555 55.000 10.77 0.00 37.91 4.63
590 591 2.543578 GCACAAGCTTCATGACGGA 58.456 52.632 10.77 0.00 37.91 4.69
601 602 1.032014 TTTCCCAGTGAAGCACAAGC 58.968 50.000 0.00 0.00 36.74 4.01
602 603 2.023673 TGTTTCCCAGTGAAGCACAAG 58.976 47.619 0.00 0.00 39.00 3.16
603 604 2.136298 TGTTTCCCAGTGAAGCACAA 57.864 45.000 0.00 0.00 39.00 3.33
604 605 2.363306 ATGTTTCCCAGTGAAGCACA 57.637 45.000 0.00 0.00 45.35 4.57
605 606 3.412386 AGTATGTTTCCCAGTGAAGCAC 58.588 45.455 0.00 0.00 45.35 4.40
606 607 3.788227 AGTATGTTTCCCAGTGAAGCA 57.212 42.857 0.00 0.00 46.37 3.91
607 608 4.798574 CAAAGTATGTTTCCCAGTGAAGC 58.201 43.478 0.00 0.00 33.63 3.86
608 609 4.613622 CGCAAAGTATGTTTCCCAGTGAAG 60.614 45.833 0.00 0.00 33.63 3.02
609 610 3.252215 CGCAAAGTATGTTTCCCAGTGAA 59.748 43.478 0.00 0.00 0.00 3.18
610 611 2.811431 CGCAAAGTATGTTTCCCAGTGA 59.189 45.455 0.00 0.00 0.00 3.41
611 612 2.668279 GCGCAAAGTATGTTTCCCAGTG 60.668 50.000 0.30 0.00 0.00 3.66
612 613 1.539827 GCGCAAAGTATGTTTCCCAGT 59.460 47.619 0.30 0.00 0.00 4.00
613 614 1.812571 AGCGCAAAGTATGTTTCCCAG 59.187 47.619 11.47 0.00 0.00 4.45
614 615 1.810151 GAGCGCAAAGTATGTTTCCCA 59.190 47.619 11.47 0.00 0.00 4.37
615 616 1.810151 TGAGCGCAAAGTATGTTTCCC 59.190 47.619 11.47 0.00 0.00 3.97
616 617 2.724839 CGTGAGCGCAAAGTATGTTTCC 60.725 50.000 11.47 0.00 0.00 3.13
617 618 2.156891 TCGTGAGCGCAAAGTATGTTTC 59.843 45.455 11.47 0.00 38.14 2.78
618 619 2.139917 TCGTGAGCGCAAAGTATGTTT 58.860 42.857 11.47 0.00 38.14 2.83
619 620 1.790755 TCGTGAGCGCAAAGTATGTT 58.209 45.000 11.47 0.00 38.14 2.71
620 621 1.660607 CATCGTGAGCGCAAAGTATGT 59.339 47.619 11.47 0.00 38.14 2.29
621 622 1.926510 TCATCGTGAGCGCAAAGTATG 59.073 47.619 11.47 7.95 38.14 2.39
622 623 2.293677 TCATCGTGAGCGCAAAGTAT 57.706 45.000 11.47 0.00 38.14 2.12
623 624 2.073117 TTCATCGTGAGCGCAAAGTA 57.927 45.000 11.47 0.00 38.14 2.24
624 625 1.394917 GATTCATCGTGAGCGCAAAGT 59.605 47.619 11.47 0.00 38.14 2.66
625 626 1.394572 TGATTCATCGTGAGCGCAAAG 59.605 47.619 11.47 0.00 38.14 2.77
626 627 1.437625 TGATTCATCGTGAGCGCAAA 58.562 45.000 11.47 0.00 38.14 3.68
627 628 1.655484 ATGATTCATCGTGAGCGCAA 58.345 45.000 11.47 0.00 38.14 4.85
628 629 2.127251 GTATGATTCATCGTGAGCGCA 58.873 47.619 11.47 0.00 38.14 6.09
629 630 1.457303 GGTATGATTCATCGTGAGCGC 59.543 52.381 0.00 0.00 38.14 5.92
630 631 2.061773 GGGTATGATTCATCGTGAGCG 58.938 52.381 1.55 0.00 39.92 5.03
631 632 3.393089 AGGGTATGATTCATCGTGAGC 57.607 47.619 1.55 0.00 0.00 4.26
632 633 3.496130 GCAAGGGTATGATTCATCGTGAG 59.504 47.826 1.55 0.00 0.00 3.51
633 634 3.466836 GCAAGGGTATGATTCATCGTGA 58.533 45.455 1.55 0.00 0.00 4.35
634 635 2.549754 GGCAAGGGTATGATTCATCGTG 59.450 50.000 1.55 0.00 0.00 4.35
635 636 2.439507 AGGCAAGGGTATGATTCATCGT 59.560 45.455 1.55 0.00 0.00 3.73
636 637 3.070018 GAGGCAAGGGTATGATTCATCG 58.930 50.000 1.55 0.00 0.00 3.84
637 638 3.817647 GTGAGGCAAGGGTATGATTCATC 59.182 47.826 1.55 0.00 0.00 2.92
638 639 3.435601 GGTGAGGCAAGGGTATGATTCAT 60.436 47.826 4.28 4.28 0.00 2.57
639 640 2.092429 GGTGAGGCAAGGGTATGATTCA 60.092 50.000 0.00 0.00 0.00 2.57
640 641 2.173569 AGGTGAGGCAAGGGTATGATTC 59.826 50.000 0.00 0.00 0.00 2.52
641 642 2.092212 CAGGTGAGGCAAGGGTATGATT 60.092 50.000 0.00 0.00 0.00 2.57
642 643 1.492176 CAGGTGAGGCAAGGGTATGAT 59.508 52.381 0.00 0.00 0.00 2.45
643 644 0.911769 CAGGTGAGGCAAGGGTATGA 59.088 55.000 0.00 0.00 0.00 2.15
644 645 0.749454 GCAGGTGAGGCAAGGGTATG 60.749 60.000 0.00 0.00 0.00 2.39
645 646 1.609783 GCAGGTGAGGCAAGGGTAT 59.390 57.895 0.00 0.00 0.00 2.73
646 647 2.602676 GGCAGGTGAGGCAAGGGTA 61.603 63.158 0.00 0.00 0.00 3.69
647 648 3.971702 GGCAGGTGAGGCAAGGGT 61.972 66.667 0.00 0.00 0.00 4.34
679 680 4.574527 CACATGTGTGTTTTTCGCAAAA 57.425 36.364 18.03 0.00 40.96 2.44
692 693 2.669569 GCGGTGGAGCACATGTGT 60.670 61.111 26.01 13.47 35.86 3.72
693 694 3.792047 CGCGGTGGAGCACATGTG 61.792 66.667 21.83 21.83 35.86 3.21
694 695 2.835701 CTACGCGGTGGAGCACATGT 62.836 60.000 12.47 0.00 35.86 3.21
695 696 2.125713 TACGCGGTGGAGCACATG 60.126 61.111 12.47 0.00 35.86 3.21
696 697 2.184322 CTACGCGGTGGAGCACAT 59.816 61.111 12.47 0.00 35.86 3.21
697 698 4.735132 GCTACGCGGTGGAGCACA 62.735 66.667 20.52 0.00 35.86 4.57
698 699 4.735132 TGCTACGCGGTGGAGCAC 62.735 66.667 23.90 0.00 41.18 4.40
699 700 4.735132 GTGCTACGCGGTGGAGCA 62.735 66.667 23.90 23.90 43.74 4.26
700 701 4.735132 TGTGCTACGCGGTGGAGC 62.735 66.667 18.77 18.77 36.72 4.70
701 702 1.878522 GATGTGCTACGCGGTGGAG 60.879 63.158 12.47 2.88 0.00 3.86
702 703 1.033202 TAGATGTGCTACGCGGTGGA 61.033 55.000 12.47 0.00 0.00 4.02
703 704 0.032130 ATAGATGTGCTACGCGGTGG 59.968 55.000 12.47 0.25 0.00 4.61
704 705 1.131771 CATAGATGTGCTACGCGGTG 58.868 55.000 12.47 3.22 0.00 4.94
705 706 0.597637 GCATAGATGTGCTACGCGGT 60.598 55.000 12.47 0.00 41.82 5.68
706 707 2.145225 GCATAGATGTGCTACGCGG 58.855 57.895 12.47 0.00 41.82 6.46
734 735 4.959839 AGGAAGCAACTGGGTAAAGAAAAA 59.040 37.500 0.00 0.00 0.00 1.94
735 736 4.542697 AGGAAGCAACTGGGTAAAGAAAA 58.457 39.130 0.00 0.00 0.00 2.29
736 737 4.178956 AGGAAGCAACTGGGTAAAGAAA 57.821 40.909 0.00 0.00 0.00 2.52
737 738 3.876309 AGGAAGCAACTGGGTAAAGAA 57.124 42.857 0.00 0.00 0.00 2.52
738 739 3.486383 CAAGGAAGCAACTGGGTAAAGA 58.514 45.455 0.00 0.00 0.00 2.52
739 740 2.558359 CCAAGGAAGCAACTGGGTAAAG 59.442 50.000 0.00 0.00 0.00 1.85
740 741 2.175931 TCCAAGGAAGCAACTGGGTAAA 59.824 45.455 0.00 0.00 30.65 2.01
741 742 1.777878 TCCAAGGAAGCAACTGGGTAA 59.222 47.619 0.00 0.00 30.65 2.85
742 743 1.440618 TCCAAGGAAGCAACTGGGTA 58.559 50.000 0.00 0.00 30.65 3.69
743 744 0.555769 TTCCAAGGAAGCAACTGGGT 59.444 50.000 0.00 0.00 30.65 4.51
744 745 1.547372 CATTCCAAGGAAGCAACTGGG 59.453 52.381 7.69 0.00 37.56 4.45
745 746 2.229784 GTCATTCCAAGGAAGCAACTGG 59.770 50.000 7.69 0.00 37.56 4.00
746 747 2.229784 GGTCATTCCAAGGAAGCAACTG 59.770 50.000 7.69 0.80 37.56 3.16
747 748 2.158475 TGGTCATTCCAAGGAAGCAACT 60.158 45.455 7.69 0.00 44.12 3.16
748 749 2.238521 TGGTCATTCCAAGGAAGCAAC 58.761 47.619 7.69 5.34 44.12 4.17
749 750 2.673775 TGGTCATTCCAAGGAAGCAA 57.326 45.000 7.69 0.00 44.12 3.91
759 760 2.420022 CAGTCGGAAACATGGTCATTCC 59.580 50.000 0.00 4.83 39.38 3.01
760 761 2.159517 GCAGTCGGAAACATGGTCATTC 60.160 50.000 0.00 0.00 0.00 2.67
761 762 1.812571 GCAGTCGGAAACATGGTCATT 59.187 47.619 0.00 0.00 0.00 2.57
762 763 1.453155 GCAGTCGGAAACATGGTCAT 58.547 50.000 0.00 0.00 0.00 3.06
763 764 0.605319 GGCAGTCGGAAACATGGTCA 60.605 55.000 0.00 0.00 0.00 4.02
764 765 0.605319 TGGCAGTCGGAAACATGGTC 60.605 55.000 0.00 0.00 0.00 4.02
765 766 0.038166 ATGGCAGTCGGAAACATGGT 59.962 50.000 0.00 0.00 0.00 3.55
766 767 0.452987 CATGGCAGTCGGAAACATGG 59.547 55.000 0.00 0.00 36.25 3.66
767 768 0.179156 GCATGGCAGTCGGAAACATG 60.179 55.000 0.00 0.00 41.26 3.21
768 769 1.315257 GGCATGGCAGTCGGAAACAT 61.315 55.000 15.47 0.00 0.00 2.71
769 770 1.971167 GGCATGGCAGTCGGAAACA 60.971 57.895 15.47 0.00 0.00 2.83
770 771 1.244019 AAGGCATGGCAGTCGGAAAC 61.244 55.000 22.64 0.00 0.00 2.78
771 772 0.960364 GAAGGCATGGCAGTCGGAAA 60.960 55.000 22.64 0.00 0.00 3.13
772 773 1.377202 GAAGGCATGGCAGTCGGAA 60.377 57.895 22.64 0.00 0.00 4.30
773 774 2.268920 GAAGGCATGGCAGTCGGA 59.731 61.111 22.64 0.00 0.00 4.55
774 775 2.046023 TGAAGGCATGGCAGTCGG 60.046 61.111 22.64 0.00 0.00 4.79
775 776 2.401766 GGTGAAGGCATGGCAGTCG 61.402 63.158 22.64 0.00 0.00 4.18
776 777 2.401766 CGGTGAAGGCATGGCAGTC 61.402 63.158 22.64 17.70 0.00 3.51
777 778 2.360350 CGGTGAAGGCATGGCAGT 60.360 61.111 22.64 8.73 0.00 4.40
778 779 1.651240 CTTCGGTGAAGGCATGGCAG 61.651 60.000 22.64 3.20 36.16 4.85
779 780 1.675310 CTTCGGTGAAGGCATGGCA 60.675 57.895 22.64 0.00 36.16 4.92
780 781 3.056313 GCTTCGGTGAAGGCATGGC 62.056 63.158 12.14 12.14 39.76 4.40
781 782 3.190878 GCTTCGGTGAAGGCATGG 58.809 61.111 8.49 0.00 39.76 3.66
786 787 1.228429 TTTGGGGCTTCGGTGAAGG 60.228 57.895 8.49 0.00 39.76 3.46
787 788 0.537371 ACTTTGGGGCTTCGGTGAAG 60.537 55.000 2.22 2.22 42.03 3.02
788 789 0.766131 TACTTTGGGGCTTCGGTGAA 59.234 50.000 0.00 0.00 0.00 3.18
789 790 0.766131 TTACTTTGGGGCTTCGGTGA 59.234 50.000 0.00 0.00 0.00 4.02
790 791 1.268625 GTTTACTTTGGGGCTTCGGTG 59.731 52.381 0.00 0.00 0.00 4.94
791 792 1.144298 AGTTTACTTTGGGGCTTCGGT 59.856 47.619 0.00 0.00 0.00 4.69
792 793 1.905637 AGTTTACTTTGGGGCTTCGG 58.094 50.000 0.00 0.00 0.00 4.30
793 794 4.048504 CAAAAGTTTACTTTGGGGCTTCG 58.951 43.478 8.51 0.00 44.69 3.79
794 795 5.018539 ACAAAAGTTTACTTTGGGGCTTC 57.981 39.130 12.96 0.00 44.69 3.86
795 796 5.429681 AACAAAAGTTTACTTTGGGGCTT 57.570 34.783 12.96 0.00 44.69 4.35
796 797 5.163385 GGTAACAAAAGTTTACTTTGGGGCT 60.163 40.000 12.96 2.10 44.69 5.19
797 798 5.051816 GGTAACAAAAGTTTACTTTGGGGC 58.948 41.667 12.96 4.21 44.69 5.80
815 816 3.254903 GTGGGAGTTGGAAATGTGGTAAC 59.745 47.826 0.00 0.00 0.00 2.50
816 817 3.492337 GTGGGAGTTGGAAATGTGGTAA 58.508 45.455 0.00 0.00 0.00 2.85
822 823 0.893270 TGCCGTGGGAGTTGGAAATG 60.893 55.000 0.00 0.00 0.00 2.32
833 834 0.892755 TAGACAAGTACTGCCGTGGG 59.107 55.000 0.00 0.00 0.00 4.61
838 839 5.763698 GGGGAATATTTAGACAAGTACTGCC 59.236 44.000 0.00 0.00 0.00 4.85
839 840 6.592870 AGGGGAATATTTAGACAAGTACTGC 58.407 40.000 0.00 0.00 0.00 4.40
873 874 9.823647 CAGGAGAATACTTGTATACATGTTTCT 57.176 33.333 26.80 26.80 36.03 2.52
874 875 9.046296 CCAGGAGAATACTTGTATACATGTTTC 57.954 37.037 24.45 23.12 36.02 2.78
878 879 8.642432 TCTTCCAGGAGAATACTTGTATACATG 58.358 37.037 15.29 15.29 32.82 3.21
880 881 8.603898 TTCTTCCAGGAGAATACTTGTATACA 57.396 34.615 0.08 0.08 32.82 2.29
886 887 9.790344 ATCATATTTCTTCCAGGAGAATACTTG 57.210 33.333 0.00 0.00 35.70 3.16
948 960 4.911390 ACTTTCTTAGTGTCAGGGGAATG 58.089 43.478 0.00 0.00 35.19 2.67
957 969 5.429130 CAGGGGGAATACTTTCTTAGTGTC 58.571 45.833 0.00 0.00 37.73 3.67
975 991 1.202927 TGACAGGAAAGAAAGCAGGGG 60.203 52.381 0.00 0.00 0.00 4.79
1020 1036 1.808411 CCTCTTTGAGCGCTTGGTAA 58.192 50.000 13.26 1.97 0.00 2.85
1514 1530 1.665735 GCGGCATTTCATCAAACACGT 60.666 47.619 0.00 0.00 0.00 4.49
1515 1531 0.984109 GCGGCATTTCATCAAACACG 59.016 50.000 0.00 0.00 0.00 4.49
1727 1743 4.286297 TGGAAACCAGACCTAATCACAG 57.714 45.455 0.00 0.00 0.00 3.66
1749 1765 2.748461 TGCAAACACAGACGTTAAGC 57.252 45.000 0.00 0.00 33.23 3.09
1771 1787 6.198639 AGTAAAGATAAAGCTCCAGGAGAGA 58.801 40.000 21.89 1.49 46.50 3.10
1899 1915 5.123027 GTGGAAGAGGTTAAGAGCAGAATTG 59.877 44.000 0.00 0.00 0.00 2.32
1917 1933 2.189594 TTGACAGCATCCAGTGGAAG 57.810 50.000 17.71 13.65 34.34 3.46
1989 2005 4.340246 CACTGCCCCAGCTCAGCA 62.340 66.667 0.00 1.24 40.80 4.41
2002 2018 2.040278 TCCATCTTCCTTGTTCCCACTG 59.960 50.000 0.00 0.00 0.00 3.66
2209 2225 0.252239 GCCTTTCCCACTTCCCCAAT 60.252 55.000 0.00 0.00 0.00 3.16
2211 2227 1.660019 TTGCCTTTCCCACTTCCCCA 61.660 55.000 0.00 0.00 0.00 4.96
2215 2231 3.366052 TCCTATTGCCTTTCCCACTTC 57.634 47.619 0.00 0.00 0.00 3.01
2217 2233 4.026052 CAAATCCTATTGCCTTTCCCACT 58.974 43.478 0.00 0.00 0.00 4.00
2253 2269 2.492025 TCTGGATCAATGCCTACCCTT 58.508 47.619 0.00 0.00 0.00 3.95
2383 2399 5.039333 GGTGATGAGTGAATTAGCAATTGC 58.961 41.667 23.05 23.05 42.49 3.56
2560 2576 1.464189 GCGATTCGGTTTCACTTCTGC 60.464 52.381 8.34 0.00 0.00 4.26
2577 2593 0.669318 CGGCAAGAAAGGTGTAGCGA 60.669 55.000 0.00 0.00 0.00 4.93
2612 2628 3.541632 TCTTCAACAAGACCTGTGTTCC 58.458 45.455 0.00 0.00 38.67 3.62
2825 2847 5.193527 TCTCCAATCACCAAATTCCCAGATA 59.806 40.000 0.00 0.00 0.00 1.98
2833 2855 3.056322 GCTGCTTCTCCAATCACCAAATT 60.056 43.478 0.00 0.00 0.00 1.82
2874 2896 2.551071 GGCCCGATTTTCTGGATCTAGG 60.551 54.545 6.21 0.00 0.00 3.02
2877 2899 0.918983 TGGCCCGATTTTCTGGATCT 59.081 50.000 0.00 0.00 0.00 2.75
2892 2914 4.114794 CAGCAAGCATTTTATAGTTGGCC 58.885 43.478 0.00 0.00 0.00 5.36
3043 3065 8.918202 TTAACCATATTTGAGTCATACCATCC 57.082 34.615 0.00 0.00 0.00 3.51
3276 3303 6.128391 CCACGTGTACAAATAACTGTGCTTAT 60.128 38.462 15.65 0.00 33.53 1.73
3315 3342 0.036388 ATGGCCTAACTGGTGTCACG 60.036 55.000 3.32 0.00 38.35 4.35
3412 3439 8.364142 ACAACTTATAGTTCTATCAGAGGATGC 58.636 37.037 7.69 0.00 36.03 3.91
3418 3445 8.475639 GGGTTCACAACTTATAGTTCTATCAGA 58.524 37.037 7.69 0.00 36.03 3.27
3507 3534 4.892323 GCTTTTCGAGAAAATGCAAAAACG 59.108 37.500 18.55 0.00 43.79 3.60
3547 3578 7.817418 AACTATTAACACTCAACACATGGTT 57.183 32.000 0.00 0.00 41.47 3.67
3591 3622 5.992217 ACCACTTTTCACACTGAGTATCTTC 59.008 40.000 0.00 0.00 34.92 2.87
3595 3626 6.119536 TCAAACCACTTTTCACACTGAGTAT 58.880 36.000 0.00 0.00 0.00 2.12
3613 3644 5.109210 CCTTGAGTTTTTGTCCTTCAAACC 58.891 41.667 0.00 0.00 44.39 3.27
3848 3879 7.555195 TCACTACTCCTATAAAGACGTCAATCA 59.445 37.037 19.50 0.00 0.00 2.57
3871 3902 8.641498 ATCCCCTCATAAATCACATAAATCAC 57.359 34.615 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.