Multiple sequence alignment - TraesCS7A01G417900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G417900 chr7A 100.000 8615 0 0 355 8969 609381562 609390176 0.000000e+00 15910.0
1 TraesCS7A01G417900 chr7A 92.405 158 11 1 2205 2361 486929940 486930097 3.260000e-54 224.0
2 TraesCS7A01G417900 chr7A 100.000 45 0 0 1 45 609381208 609381252 5.770000e-12 84.2
3 TraesCS7A01G417900 chr7D 95.849 6071 166 25 2884 8933 529906680 529912685 0.000000e+00 9736.0
4 TraesCS7A01G417900 chr7D 96.321 1930 50 8 943 2855 529904756 529906681 0.000000e+00 3151.0
5 TraesCS7A01G417900 chr7D 93.205 677 31 4 941 1602 5304755 5304079 0.000000e+00 981.0
6 TraesCS7A01G417900 chr7D 93.671 158 9 1 2205 2361 436961795 436961952 1.510000e-57 235.0
7 TraesCS7A01G417900 chr7D 90.230 174 13 2 7079 7251 93085549 93085379 3.260000e-54 224.0
8 TraesCS7A01G417900 chr7D 97.015 67 2 0 1632 1698 5303153 5303087 7.360000e-21 113.0
9 TraesCS7A01G417900 chr7B 96.816 5402 142 12 962 6342 567997605 568002997 0.000000e+00 8996.0
10 TraesCS7A01G417900 chr7B 92.824 2620 115 27 6331 8933 568004979 568007542 0.000000e+00 3729.0
11 TraesCS7A01G417900 chr7B 89.041 219 8 7 356 560 567997006 567997222 3.210000e-64 257.0
12 TraesCS7A01G417900 chr7B 93.038 158 10 1 2205 2361 453623290 453623447 7.000000e-56 230.0
13 TraesCS7A01G417900 chr4B 93.636 770 37 4 941 1698 100836283 100835514 0.000000e+00 1140.0
14 TraesCS7A01G417900 chr4B 92.857 770 43 3 941 1698 100841831 100841062 0.000000e+00 1107.0
15 TraesCS7A01G417900 chr4B 92.857 770 41 6 941 1698 100839042 100838275 0.000000e+00 1105.0
16 TraesCS7A01G417900 chr5D 91.332 473 32 1 7576 8048 450420256 450419793 9.820000e-179 638.0
17 TraesCS7A01G417900 chr5D 90.275 473 37 2 7576 8048 75600235 75599772 2.140000e-170 610.0
18 TraesCS7A01G417900 chr1D 90.275 473 37 1 7576 8048 2545728 2545265 2.140000e-170 610.0
19 TraesCS7A01G417900 chr1D 89.429 473 41 1 7576 8048 353233546 353234009 1.000000e-163 588.0
20 TraesCS7A01G417900 chr2D 89.852 473 38 2 7576 8048 619985744 619985282 4.630000e-167 599.0
21 TraesCS7A01G417900 chr2D 89.634 164 16 1 2195 2357 88290045 88290208 3.280000e-49 207.0
22 TraesCS7A01G417900 chr4A 89.641 473 39 2 7576 8048 254222601 254223063 2.160000e-165 593.0
23 TraesCS7A01G417900 chr3D 94.156 154 9 0 7084 7237 54335782 54335935 1.510000e-57 235.0
24 TraesCS7A01G417900 chr3D 91.824 159 13 0 7079 7237 15295212 15295370 1.170000e-53 222.0
25 TraesCS7A01G417900 chr5B 91.772 158 12 1 2201 2357 98663335 98663178 1.520000e-52 219.0
26 TraesCS7A01G417900 chr5B 91.250 160 12 2 7079 7237 581761063 581761221 5.450000e-52 217.0
27 TraesCS7A01G417900 chr5B 89.349 169 13 4 7079 7245 592062977 592063142 3.280000e-49 207.0
28 TraesCS7A01G417900 chr5A 90.683 161 14 1 2197 2357 86662178 86662019 7.050000e-51 213.0
29 TraesCS7A01G417900 chr5A 92.053 151 11 1 2208 2357 366635478 366635328 2.540000e-50 211.0
30 TraesCS7A01G417900 chrUn 91.667 144 12 0 7079 7222 117282996 117283139 5.490000e-47 200.0
31 TraesCS7A01G417900 chr1B 86.782 174 19 2 7079 7251 211633154 211632984 3.310000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G417900 chr7A 609381208 609390176 8968 False 7997.100000 15910 100.000000 1 8969 2 chr7A.!!$F2 8968
1 TraesCS7A01G417900 chr7D 529904756 529912685 7929 False 6443.500000 9736 96.085000 943 8933 2 chr7D.!!$F2 7990
2 TraesCS7A01G417900 chr7D 5303087 5304755 1668 True 547.000000 981 95.110000 941 1698 2 chr7D.!!$R2 757
3 TraesCS7A01G417900 chr7B 567997006 568007542 10536 False 4327.333333 8996 92.893667 356 8933 3 chr7B.!!$F2 8577
4 TraesCS7A01G417900 chr4B 100835514 100841831 6317 True 1117.333333 1140 93.116667 941 1698 3 chr4B.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 599 0.025001 CTCATTGAACGCCGCTTACG 59.975 55.000 0.00 0.0 39.67 3.18 F
713 779 0.110238 GCGTTGCAGCTCGATTTTGA 60.110 50.000 13.17 0.0 0.00 2.69 F
739 805 0.176910 TTCGCCCATCGTTATCAGCA 59.823 50.000 0.00 0.0 39.67 4.41 F
740 806 0.176910 TCGCCCATCGTTATCAGCAA 59.823 50.000 0.00 0.0 39.67 3.91 F
899 987 0.392336 GCCTTGGGTGTTTGCATTGA 59.608 50.000 0.00 0.0 0.00 2.57 F
900 988 1.002315 GCCTTGGGTGTTTGCATTGAT 59.998 47.619 0.00 0.0 0.00 2.57 F
3183 9780 1.747355 GCCCAGATTGATGACCAAGTG 59.253 52.381 0.00 0.0 38.31 3.16 F
4413 11010 0.606673 GTCAGGTGTTCCCAGAAGCC 60.607 60.000 0.00 0.0 34.66 4.35 F
5110 11707 0.245539 CCATTTGGGCTCAAGCAGTG 59.754 55.000 0.00 0.0 44.36 3.66 F
5680 12277 0.388907 GCAGTGTTCCGCGTAACCTA 60.389 55.000 12.25 0.0 0.00 3.08 F
7620 16213 1.509923 GAACATGCAAGCAGCTCCC 59.490 57.895 0.00 0.0 45.94 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 8935 6.630203 TTTAGTTAGCATTTACTCCCTCCA 57.370 37.500 0.00 0.0 0.00 3.86 R
2634 9226 3.507233 TGGTTTGCAAGATCCAGATGTTC 59.493 43.478 13.49 0.0 0.00 3.18 R
2855 9452 7.611213 AAGTGTAAATAGATGGGAGAAAACG 57.389 36.000 0.00 0.0 0.00 3.60 R
3046 9643 4.110036 ACTTGTGCAAGGAGTTGAAAAC 57.890 40.909 15.31 0.0 44.35 2.43 R
3183 9780 5.712152 ATTCATTGTCTGGAACTTTGGTC 57.288 39.130 0.00 0.0 0.00 4.02 R
3232 9829 0.190815 ACAAAGGGGGAGGCATTGTT 59.809 50.000 0.00 0.0 30.50 2.83 R
5110 11707 1.067213 GCAGGAGTGTTCTCAGGAGAC 60.067 57.143 0.00 0.0 42.05 3.36 R
5509 12106 3.829026 AGAGCAAAGGAAGGAAAACCATC 59.171 43.478 0.00 0.0 0.00 3.51 R
6883 15474 1.450134 GCACATGTCATCGGGAGCA 60.450 57.895 0.00 0.0 0.00 4.26 R
7632 16225 1.077212 CTCCATCTGGTTGGGCTGG 60.077 63.158 0.00 0.0 37.37 4.85 R
8846 17482 0.461693 GCTCAAGTGCCTAGCTCCTG 60.462 60.000 0.00 0.0 33.40 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
18 19 1.603455 CACCACCACCACCACCATC 60.603 63.158 0.00 0.00 0.00 3.51
19 20 2.035626 CCACCACCACCACCATCC 59.964 66.667 0.00 0.00 0.00 3.51
20 21 2.035626 CACCACCACCACCATCCC 59.964 66.667 0.00 0.00 0.00 3.85
21 22 3.646715 ACCACCACCACCATCCCG 61.647 66.667 0.00 0.00 0.00 5.14
42 43 4.779733 GCGTCTCCCTCCCCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
43 44 2.760385 CGTCTCCCTCCCCTCCAC 60.760 72.222 0.00 0.00 0.00 4.02
44 45 2.450243 GTCTCCCTCCCCTCCACA 59.550 66.667 0.00 0.00 0.00 4.17
506 515 4.247612 CCGATCCGACCGACCGAC 62.248 72.222 0.00 0.00 0.00 4.79
538 552 1.601412 GCCCCTCGTAGTAATGTACGC 60.601 57.143 0.00 0.00 44.45 4.42
550 564 0.683504 ATGTACGCGACTCCCTTCCT 60.684 55.000 15.93 0.00 0.00 3.36
560 574 1.380785 TCCCTTCCTATCGCCGTGT 60.381 57.895 0.00 0.00 0.00 4.49
561 575 1.227263 CCCTTCCTATCGCCGTGTG 60.227 63.158 0.00 0.00 0.00 3.82
562 576 1.883084 CCTTCCTATCGCCGTGTGC 60.883 63.158 0.00 0.00 0.00 4.57
564 578 0.460284 CTTCCTATCGCCGTGTGCTT 60.460 55.000 0.00 0.00 38.05 3.91
565 579 0.459585 TTCCTATCGCCGTGTGCTTC 60.460 55.000 0.00 0.00 38.05 3.86
567 581 1.141881 CTATCGCCGTGTGCTTCCT 59.858 57.895 0.00 0.00 38.05 3.36
568 582 0.872021 CTATCGCCGTGTGCTTCCTC 60.872 60.000 0.00 0.00 38.05 3.71
569 583 1.600511 TATCGCCGTGTGCTTCCTCA 61.601 55.000 0.00 0.00 38.05 3.86
570 584 2.244117 ATCGCCGTGTGCTTCCTCAT 62.244 55.000 0.00 0.00 38.05 2.90
571 585 2.034879 CGCCGTGTGCTTCCTCATT 61.035 57.895 0.00 0.00 38.05 2.57
572 586 1.503542 GCCGTGTGCTTCCTCATTG 59.496 57.895 0.00 0.00 36.87 2.82
573 587 0.955428 GCCGTGTGCTTCCTCATTGA 60.955 55.000 0.00 0.00 36.87 2.57
574 588 1.522668 CCGTGTGCTTCCTCATTGAA 58.477 50.000 0.00 0.00 0.00 2.69
577 591 0.874390 TGTGCTTCCTCATTGAACGC 59.126 50.000 0.00 0.00 0.00 4.84
579 593 1.298157 TGCTTCCTCATTGAACGCCG 61.298 55.000 0.00 0.00 0.00 6.46
580 594 1.425428 CTTCCTCATTGAACGCCGC 59.575 57.895 0.00 0.00 0.00 6.53
581 595 1.003839 TTCCTCATTGAACGCCGCT 60.004 52.632 0.00 0.00 0.00 5.52
582 596 0.605319 TTCCTCATTGAACGCCGCTT 60.605 50.000 0.00 0.00 0.00 4.68
583 597 0.248012 TCCTCATTGAACGCCGCTTA 59.752 50.000 0.00 0.00 0.00 3.09
584 598 0.373716 CCTCATTGAACGCCGCTTAC 59.626 55.000 0.00 0.00 0.00 2.34
585 599 0.025001 CTCATTGAACGCCGCTTACG 59.975 55.000 0.00 0.00 39.67 3.18
586 600 0.388778 TCATTGAACGCCGCTTACGA 60.389 50.000 0.00 0.00 43.93 3.43
587 601 0.650512 CATTGAACGCCGCTTACGAT 59.349 50.000 0.00 0.00 43.93 3.73
588 602 1.062002 CATTGAACGCCGCTTACGATT 59.938 47.619 0.00 0.00 43.93 3.34
590 604 0.717224 TGAACGCCGCTTACGATTTC 59.283 50.000 0.00 0.00 43.93 2.17
592 606 2.054242 CGCCGCTTACGATTTCGC 60.054 61.111 0.00 0.00 43.93 4.70
593 607 2.514013 CGCCGCTTACGATTTCGCT 61.514 57.895 0.00 0.00 43.93 4.93
597 611 1.171876 CGCTTACGATTTCGCTTTGC 58.828 50.000 0.00 0.00 43.93 3.68
606 672 0.669318 TTTCGCTTTGCCGATCGTCT 60.669 50.000 15.09 0.00 37.06 4.18
625 691 0.387565 TTCGGCAAAGCTCCCAAAAC 59.612 50.000 0.00 0.00 0.00 2.43
631 697 2.926586 GCAAAGCTCCCAAAACGATTCC 60.927 50.000 0.00 0.00 0.00 3.01
633 699 2.514458 AGCTCCCAAAACGATTCCAT 57.486 45.000 0.00 0.00 0.00 3.41
641 707 4.322650 CCCAAAACGATTCCATTCACCAAT 60.323 41.667 0.00 0.00 0.00 3.16
642 708 5.105554 CCCAAAACGATTCCATTCACCAATA 60.106 40.000 0.00 0.00 0.00 1.90
643 709 6.406849 CCCAAAACGATTCCATTCACCAATAT 60.407 38.462 0.00 0.00 0.00 1.28
644 710 7.201866 CCCAAAACGATTCCATTCACCAATATA 60.202 37.037 0.00 0.00 0.00 0.86
645 711 7.647715 CCAAAACGATTCCATTCACCAATATAC 59.352 37.037 0.00 0.00 0.00 1.47
646 712 8.405531 CAAAACGATTCCATTCACCAATATACT 58.594 33.333 0.00 0.00 0.00 2.12
647 713 9.621629 AAAACGATTCCATTCACCAATATACTA 57.378 29.630 0.00 0.00 0.00 1.82
648 714 8.833231 AACGATTCCATTCACCAATATACTAG 57.167 34.615 0.00 0.00 0.00 2.57
649 715 8.190326 ACGATTCCATTCACCAATATACTAGA 57.810 34.615 0.00 0.00 0.00 2.43
650 716 8.816894 ACGATTCCATTCACCAATATACTAGAT 58.183 33.333 0.00 0.00 0.00 1.98
651 717 9.658799 CGATTCCATTCACCAATATACTAGATT 57.341 33.333 0.00 0.00 0.00 2.40
654 720 9.573166 TTCCATTCACCAATATACTAGATTTGG 57.427 33.333 0.00 6.48 43.41 3.28
655 721 7.665559 TCCATTCACCAATATACTAGATTTGGC 59.334 37.037 0.00 0.00 41.89 4.52
656 722 7.448161 CCATTCACCAATATACTAGATTTGGCA 59.552 37.037 0.00 0.00 41.89 4.92
657 723 9.017509 CATTCACCAATATACTAGATTTGGCAT 57.982 33.333 0.00 0.00 41.89 4.40
658 724 8.995027 TTCACCAATATACTAGATTTGGCATT 57.005 30.769 0.00 0.00 41.89 3.56
659 725 8.394971 TCACCAATATACTAGATTTGGCATTG 57.605 34.615 0.00 0.00 41.89 2.82
660 726 7.998383 TCACCAATATACTAGATTTGGCATTGT 59.002 33.333 0.00 0.00 41.89 2.71
661 727 8.632679 CACCAATATACTAGATTTGGCATTGTT 58.367 33.333 0.00 0.00 41.89 2.83
662 728 8.632679 ACCAATATACTAGATTTGGCATTGTTG 58.367 33.333 0.00 0.00 41.89 3.33
663 729 8.632679 CCAATATACTAGATTTGGCATTGTTGT 58.367 33.333 0.00 0.00 32.88 3.32
668 734 7.849804 ACTAGATTTGGCATTGTTGTACTAG 57.150 36.000 0.00 0.00 0.00 2.57
669 735 7.620880 ACTAGATTTGGCATTGTTGTACTAGA 58.379 34.615 0.00 0.00 0.00 2.43
670 736 6.992063 AGATTTGGCATTGTTGTACTAGAG 57.008 37.500 0.00 0.00 0.00 2.43
671 737 5.882557 AGATTTGGCATTGTTGTACTAGAGG 59.117 40.000 0.00 0.00 0.00 3.69
672 738 4.901197 TTGGCATTGTTGTACTAGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
673 739 5.435686 TTGGCATTGTTGTACTAGAGGAT 57.564 39.130 0.00 0.00 0.00 3.24
674 740 4.769688 TGGCATTGTTGTACTAGAGGATG 58.230 43.478 0.00 0.00 0.00 3.51
675 741 4.130118 GGCATTGTTGTACTAGAGGATGG 58.870 47.826 0.00 0.00 0.00 3.51
676 742 4.130118 GCATTGTTGTACTAGAGGATGGG 58.870 47.826 0.00 0.00 0.00 4.00
677 743 4.384208 GCATTGTTGTACTAGAGGATGGGT 60.384 45.833 0.00 0.00 0.00 4.51
678 744 5.163343 GCATTGTTGTACTAGAGGATGGGTA 60.163 44.000 0.00 0.00 0.00 3.69
679 745 6.464465 GCATTGTTGTACTAGAGGATGGGTAT 60.464 42.308 0.00 0.00 0.00 2.73
680 746 6.726490 TTGTTGTACTAGAGGATGGGTATC 57.274 41.667 0.00 0.00 0.00 2.24
681 747 6.027025 TGTTGTACTAGAGGATGGGTATCT 57.973 41.667 0.00 0.00 33.68 1.98
682 748 5.833667 TGTTGTACTAGAGGATGGGTATCTG 59.166 44.000 0.00 0.00 33.68 2.90
683 749 4.999310 TGTACTAGAGGATGGGTATCTGG 58.001 47.826 0.00 0.00 33.68 3.86
684 750 4.419200 TGTACTAGAGGATGGGTATCTGGT 59.581 45.833 0.00 0.00 38.23 4.00
685 751 4.120946 ACTAGAGGATGGGTATCTGGTC 57.879 50.000 0.00 0.00 29.87 4.02
686 752 2.002505 AGAGGATGGGTATCTGGTCG 57.997 55.000 0.00 0.00 33.68 4.79
687 753 1.499438 AGAGGATGGGTATCTGGTCGA 59.501 52.381 0.00 0.00 33.68 4.20
688 754 2.110899 AGAGGATGGGTATCTGGTCGAT 59.889 50.000 0.00 0.00 36.11 3.59
689 755 2.494073 GAGGATGGGTATCTGGTCGATC 59.506 54.545 0.00 0.00 33.48 3.69
690 756 1.202582 GGATGGGTATCTGGTCGATCG 59.797 57.143 9.36 9.36 33.48 3.69
691 757 2.160205 GATGGGTATCTGGTCGATCGA 58.840 52.381 15.15 15.15 33.48 3.59
692 758 2.287977 TGGGTATCTGGTCGATCGAT 57.712 50.000 22.50 7.28 33.48 3.59
693 759 2.160205 TGGGTATCTGGTCGATCGATC 58.840 52.381 22.50 21.98 33.48 3.69
702 768 2.536619 CGATCGATCGCGTTGCAG 59.463 61.111 32.34 6.58 43.84 4.41
703 769 2.243810 GATCGATCGCGTTGCAGC 59.756 61.111 11.09 0.00 38.98 5.25
704 770 2.202797 ATCGATCGCGTTGCAGCT 60.203 55.556 11.09 0.00 38.98 4.24
705 771 2.140034 GATCGATCGCGTTGCAGCTC 62.140 60.000 11.09 0.00 38.98 4.09
706 772 4.257376 CGATCGCGTTGCAGCTCG 62.257 66.667 5.77 6.60 34.40 5.03
707 773 2.880879 GATCGCGTTGCAGCTCGA 60.881 61.111 17.75 17.75 35.34 4.04
708 774 2.202797 ATCGCGTTGCAGCTCGAT 60.203 55.556 20.58 20.58 36.91 3.59
709 775 1.756375 GATCGCGTTGCAGCTCGATT 61.756 55.000 25.56 12.32 41.11 3.34
710 776 1.361668 ATCGCGTTGCAGCTCGATTT 61.362 50.000 20.58 3.06 38.34 2.17
711 777 1.154413 CGCGTTGCAGCTCGATTTT 60.154 52.632 7.17 0.00 34.40 1.82
712 778 1.390664 CGCGTTGCAGCTCGATTTTG 61.391 55.000 7.17 0.00 34.40 2.44
713 779 0.110238 GCGTTGCAGCTCGATTTTGA 60.110 50.000 13.17 0.00 0.00 2.69
714 780 1.466360 GCGTTGCAGCTCGATTTTGAT 60.466 47.619 13.17 0.00 0.00 2.57
715 781 2.855180 CGTTGCAGCTCGATTTTGATT 58.145 42.857 0.00 0.00 0.00 2.57
716 782 3.236816 CGTTGCAGCTCGATTTTGATTT 58.763 40.909 0.00 0.00 0.00 2.17
717 783 3.670055 CGTTGCAGCTCGATTTTGATTTT 59.330 39.130 0.00 0.00 0.00 1.82
718 784 4.431986 CGTTGCAGCTCGATTTTGATTTTG 60.432 41.667 0.00 0.00 0.00 2.44
719 785 3.577667 TGCAGCTCGATTTTGATTTTGG 58.422 40.909 0.00 0.00 0.00 3.28
720 786 3.005684 TGCAGCTCGATTTTGATTTTGGT 59.994 39.130 0.00 0.00 0.00 3.67
721 787 3.989817 GCAGCTCGATTTTGATTTTGGTT 59.010 39.130 0.00 0.00 0.00 3.67
722 788 4.090498 GCAGCTCGATTTTGATTTTGGTTC 59.910 41.667 0.00 0.00 0.00 3.62
723 789 4.321745 CAGCTCGATTTTGATTTTGGTTCG 59.678 41.667 0.00 0.00 0.00 3.95
724 790 3.059438 GCTCGATTTTGATTTTGGTTCGC 59.941 43.478 0.00 0.00 0.00 4.70
725 791 3.570559 TCGATTTTGATTTTGGTTCGCC 58.429 40.909 0.00 0.00 37.92 5.54
726 792 2.666022 CGATTTTGATTTTGGTTCGCCC 59.334 45.455 0.00 0.00 36.08 6.13
727 793 3.658709 GATTTTGATTTTGGTTCGCCCA 58.341 40.909 0.00 0.00 43.27 5.36
728 794 3.760580 TTTTGATTTTGGTTCGCCCAT 57.239 38.095 0.00 0.00 44.74 4.00
729 795 3.311486 TTTGATTTTGGTTCGCCCATC 57.689 42.857 0.00 0.00 44.74 3.51
730 796 0.808125 TGATTTTGGTTCGCCCATCG 59.192 50.000 0.00 0.00 44.74 3.84
731 797 0.808755 GATTTTGGTTCGCCCATCGT 59.191 50.000 0.00 0.00 44.74 3.73
732 798 1.201414 GATTTTGGTTCGCCCATCGTT 59.799 47.619 0.00 0.00 44.74 3.85
733 799 1.893544 TTTTGGTTCGCCCATCGTTA 58.106 45.000 0.00 0.00 44.74 3.18
734 800 2.116827 TTTGGTTCGCCCATCGTTAT 57.883 45.000 0.00 0.00 44.74 1.89
735 801 1.658994 TTGGTTCGCCCATCGTTATC 58.341 50.000 0.00 0.00 44.74 1.75
736 802 0.537653 TGGTTCGCCCATCGTTATCA 59.462 50.000 0.00 0.00 38.72 2.15
737 803 1.217882 GGTTCGCCCATCGTTATCAG 58.782 55.000 0.00 0.00 39.67 2.90
738 804 0.582005 GTTCGCCCATCGTTATCAGC 59.418 55.000 0.00 0.00 39.67 4.26
739 805 0.176910 TTCGCCCATCGTTATCAGCA 59.823 50.000 0.00 0.00 39.67 4.41
740 806 0.176910 TCGCCCATCGTTATCAGCAA 59.823 50.000 0.00 0.00 39.67 3.91
741 807 1.013596 CGCCCATCGTTATCAGCAAA 58.986 50.000 0.00 0.00 0.00 3.68
742 808 1.003545 CGCCCATCGTTATCAGCAAAG 60.004 52.381 0.00 0.00 0.00 2.77
743 809 1.268743 GCCCATCGTTATCAGCAAAGC 60.269 52.381 0.00 0.00 0.00 3.51
744 810 2.292267 CCCATCGTTATCAGCAAAGCT 58.708 47.619 0.00 0.00 40.77 3.74
745 811 2.289002 CCCATCGTTATCAGCAAAGCTC 59.711 50.000 0.00 0.00 36.40 4.09
746 812 2.289002 CCATCGTTATCAGCAAAGCTCC 59.711 50.000 0.00 0.00 36.40 4.70
747 813 2.024176 TCGTTATCAGCAAAGCTCCC 57.976 50.000 0.00 0.00 36.40 4.30
748 814 1.277842 TCGTTATCAGCAAAGCTCCCA 59.722 47.619 0.00 0.00 36.40 4.37
749 815 2.083774 CGTTATCAGCAAAGCTCCCAA 58.916 47.619 0.00 0.00 36.40 4.12
750 816 2.487762 CGTTATCAGCAAAGCTCCCAAA 59.512 45.455 0.00 0.00 36.40 3.28
751 817 3.129287 CGTTATCAGCAAAGCTCCCAAAT 59.871 43.478 0.00 0.00 36.40 2.32
752 818 4.427312 GTTATCAGCAAAGCTCCCAAATG 58.573 43.478 0.00 0.00 36.40 2.32
753 819 2.291209 TCAGCAAAGCTCCCAAATGA 57.709 45.000 0.00 0.00 36.40 2.57
754 820 1.888512 TCAGCAAAGCTCCCAAATGAC 59.111 47.619 0.00 0.00 36.40 3.06
755 821 0.883833 AGCAAAGCTCCCAAATGACG 59.116 50.000 0.00 0.00 30.62 4.35
756 822 0.733909 GCAAAGCTCCCAAATGACGC 60.734 55.000 0.00 0.00 0.00 5.19
757 823 0.454957 CAAAGCTCCCAAATGACGCG 60.455 55.000 3.53 3.53 0.00 6.01
758 824 0.889186 AAAGCTCCCAAATGACGCGT 60.889 50.000 13.85 13.85 0.00 6.01
759 825 0.889186 AAGCTCCCAAATGACGCGTT 60.889 50.000 15.53 0.00 0.00 4.84
760 826 0.889186 AGCTCCCAAATGACGCGTTT 60.889 50.000 15.53 0.41 0.00 3.60
761 827 0.454452 GCTCCCAAATGACGCGTTTC 60.454 55.000 15.53 0.97 0.00 2.78
762 828 0.871722 CTCCCAAATGACGCGTTTCA 59.128 50.000 15.53 8.44 0.00 2.69
763 829 0.589223 TCCCAAATGACGCGTTTCAC 59.411 50.000 15.53 0.00 0.00 3.18
764 830 0.591170 CCCAAATGACGCGTTTCACT 59.409 50.000 15.53 0.00 0.00 3.41
765 831 1.801771 CCCAAATGACGCGTTTCACTA 59.198 47.619 15.53 0.00 0.00 2.74
766 832 2.418628 CCCAAATGACGCGTTTCACTAT 59.581 45.455 15.53 0.00 0.00 2.12
767 833 3.119990 CCCAAATGACGCGTTTCACTATT 60.120 43.478 15.53 5.17 0.00 1.73
768 834 4.472286 CCAAATGACGCGTTTCACTATTT 58.528 39.130 15.53 10.81 0.00 1.40
769 835 4.320690 CCAAATGACGCGTTTCACTATTTG 59.679 41.667 15.53 20.10 0.00 2.32
773 839 0.450184 CGCGTTTCACTATTTGGGGG 59.550 55.000 0.00 0.00 0.00 5.40
790 856 1.548719 GGGGTTGACCAAAATGTAGCC 59.451 52.381 2.12 0.00 42.91 3.93
792 858 2.897326 GGGTTGACCAAAATGTAGCCTT 59.103 45.455 2.12 0.00 39.85 4.35
802 869 6.805713 CCAAAATGTAGCCTTATTTGGTAGG 58.194 40.000 7.28 0.00 43.09 3.18
803 870 6.183360 CCAAAATGTAGCCTTATTTGGTAGGG 60.183 42.308 7.28 0.00 43.09 3.53
811 878 0.632294 TATTTGGTAGGGTTGGGGGC 59.368 55.000 0.00 0.00 0.00 5.80
814 881 3.332385 GGTAGGGTTGGGGGCGAA 61.332 66.667 0.00 0.00 0.00 4.70
816 883 3.332385 TAGGGTTGGGGGCGAACC 61.332 66.667 0.00 0.00 40.67 3.62
837 904 1.878070 CAGCTCGCTTGCCATGAAA 59.122 52.632 0.00 0.00 0.00 2.69
838 905 0.454600 CAGCTCGCTTGCCATGAAAT 59.545 50.000 0.00 0.00 0.00 2.17
839 906 0.737219 AGCTCGCTTGCCATGAAATC 59.263 50.000 0.00 0.00 0.00 2.17
840 907 0.737219 GCTCGCTTGCCATGAAATCT 59.263 50.000 0.00 0.00 0.00 2.40
842 909 2.551459 GCTCGCTTGCCATGAAATCTAT 59.449 45.455 0.00 0.00 0.00 1.98
844 911 4.498682 GCTCGCTTGCCATGAAATCTATTT 60.499 41.667 0.00 0.00 0.00 1.40
845 912 4.923893 TCGCTTGCCATGAAATCTATTTG 58.076 39.130 0.00 0.00 0.00 2.32
846 913 4.398988 TCGCTTGCCATGAAATCTATTTGT 59.601 37.500 0.00 0.00 0.00 2.83
847 914 5.104374 CGCTTGCCATGAAATCTATTTGTT 58.896 37.500 0.00 0.00 0.00 2.83
848 915 5.005012 CGCTTGCCATGAAATCTATTTGTTG 59.995 40.000 0.00 0.00 0.00 3.33
850 917 4.757594 TGCCATGAAATCTATTTGTTGGC 58.242 39.130 20.85 20.85 45.43 4.52
852 919 4.807304 GCCATGAAATCTATTTGTTGGCTG 59.193 41.667 20.59 2.23 43.76 4.85
853 920 5.394443 GCCATGAAATCTATTTGTTGGCTGA 60.394 40.000 20.59 0.00 43.76 4.26
854 921 6.038356 CCATGAAATCTATTTGTTGGCTGAC 58.962 40.000 0.00 0.00 0.00 3.51
863 951 1.450312 GTTGGCTGACCGATCCTGG 60.450 63.158 0.00 0.00 39.70 4.45
865 953 3.785859 GGCTGACCGATCCTGGCA 61.786 66.667 0.00 0.00 0.00 4.92
870 958 1.207089 CTGACCGATCCTGGCAAGTTA 59.793 52.381 0.00 0.00 0.00 2.24
871 959 1.207089 TGACCGATCCTGGCAAGTTAG 59.793 52.381 0.00 0.00 0.00 2.34
874 962 1.207089 CCGATCCTGGCAAGTTAGACA 59.793 52.381 0.00 0.00 0.00 3.41
894 982 2.029518 GCAGCCTTGGGTGTTTGC 59.970 61.111 18.42 2.37 0.00 3.68
896 984 2.051941 CAGCCTTGGGTGTTTGCAT 58.948 52.632 10.40 0.00 0.00 3.96
897 985 0.393820 CAGCCTTGGGTGTTTGCATT 59.606 50.000 10.40 0.00 0.00 3.56
899 987 0.392336 GCCTTGGGTGTTTGCATTGA 59.608 50.000 0.00 0.00 0.00 2.57
900 988 1.002315 GCCTTGGGTGTTTGCATTGAT 59.998 47.619 0.00 0.00 0.00 2.57
901 989 2.690786 CCTTGGGTGTTTGCATTGATG 58.309 47.619 0.00 0.00 0.00 3.07
902 990 2.299582 CCTTGGGTGTTTGCATTGATGA 59.700 45.455 0.00 0.00 0.00 2.92
903 991 3.319755 CTTGGGTGTTTGCATTGATGAC 58.680 45.455 0.00 0.00 0.00 3.06
904 992 2.314246 TGGGTGTTTGCATTGATGACA 58.686 42.857 0.00 0.00 0.00 3.58
906 994 3.056678 TGGGTGTTTGCATTGATGACATC 60.057 43.478 8.59 8.59 0.00 3.06
907 995 3.173599 GGTGTTTGCATTGATGACATCG 58.826 45.455 10.79 0.00 0.00 3.84
908 996 2.595536 GTGTTTGCATTGATGACATCGC 59.404 45.455 10.79 8.61 0.00 4.58
909 997 2.488937 TGTTTGCATTGATGACATCGCT 59.511 40.909 10.79 0.00 0.00 4.93
911 999 4.201841 TGTTTGCATTGATGACATCGCTAG 60.202 41.667 10.79 2.41 0.00 3.42
912 1000 3.457610 TGCATTGATGACATCGCTAGA 57.542 42.857 10.79 0.00 0.00 2.43
913 1001 3.795877 TGCATTGATGACATCGCTAGAA 58.204 40.909 10.79 0.00 0.00 2.10
914 1002 4.190772 TGCATTGATGACATCGCTAGAAA 58.809 39.130 10.79 0.00 0.00 2.52
918 1006 6.141844 GCATTGATGACATCGCTAGAAATTTG 59.858 38.462 10.79 0.00 0.00 2.32
919 1007 6.983474 TTGATGACATCGCTAGAAATTTGA 57.017 33.333 10.79 0.00 0.00 2.69
920 1008 6.983474 TGATGACATCGCTAGAAATTTGAA 57.017 33.333 10.79 0.00 0.00 2.69
921 1009 7.558161 TGATGACATCGCTAGAAATTTGAAT 57.442 32.000 10.79 0.00 0.00 2.57
922 1010 7.633621 TGATGACATCGCTAGAAATTTGAATC 58.366 34.615 10.79 0.00 0.00 2.52
924 1012 7.558161 TGACATCGCTAGAAATTTGAATCAT 57.442 32.000 0.00 0.00 0.00 2.45
925 1013 7.412063 TGACATCGCTAGAAATTTGAATCATG 58.588 34.615 0.00 0.00 0.00 3.07
926 1014 7.280652 TGACATCGCTAGAAATTTGAATCATGA 59.719 33.333 0.00 0.00 0.00 3.07
927 1015 8.162878 ACATCGCTAGAAATTTGAATCATGAT 57.837 30.769 1.18 1.18 0.00 2.45
928 1016 8.074370 ACATCGCTAGAAATTTGAATCATGATG 58.926 33.333 9.46 3.56 34.65 3.07
929 1017 7.558161 TCGCTAGAAATTTGAATCATGATGT 57.442 32.000 9.46 0.00 0.00 3.06
930 1018 7.412063 TCGCTAGAAATTTGAATCATGATGTG 58.588 34.615 9.46 0.00 0.00 3.21
931 1019 7.066163 TCGCTAGAAATTTGAATCATGATGTGT 59.934 33.333 9.46 0.00 0.00 3.72
932 1020 7.699391 CGCTAGAAATTTGAATCATGATGTGTT 59.301 33.333 9.46 0.00 0.00 3.32
933 1021 9.362539 GCTAGAAATTTGAATCATGATGTGTTT 57.637 29.630 9.46 6.72 0.00 2.83
948 1072 4.098055 TGTGTTTGTAAATGTGCGTTGT 57.902 36.364 0.00 0.00 0.00 3.32
1162 6834 4.130118 GCCATCTCCGTCTTTCATGTTAT 58.870 43.478 0.00 0.00 0.00 1.89
1212 6893 5.678132 AAAAATCATCTTGTGCTTTTGCC 57.322 34.783 0.00 0.00 46.87 4.52
1332 7013 6.539649 TTCAGAACCTGAAATGTTTACTCG 57.460 37.500 6.91 0.00 45.84 4.18
1823 8412 8.635765 ATGGCATTATTCGATACCTAAAATGT 57.364 30.769 0.00 0.00 0.00 2.71
1956 8545 3.701040 GAGAGGATGAGAGAGCAACTTCT 59.299 47.826 0.00 0.00 31.38 2.85
2114 8703 3.706086 ACTGTCATTGCCAAAAGAGGTTT 59.294 39.130 0.00 0.00 0.00 3.27
2134 8723 7.581476 AGGTTTAAAATAACACATCTGACACG 58.419 34.615 0.00 0.00 0.00 4.49
2411 9002 7.410174 TGATATCCATTTACTGTTTCCCAACT 58.590 34.615 0.00 0.00 33.58 3.16
2546 9138 2.526304 TTGTGCTCCAGTGTAGTCAC 57.474 50.000 4.20 4.20 44.15 3.67
2634 9226 8.132362 CCTCAAGCTTATACACTAACTACTCTG 58.868 40.741 0.00 0.00 0.00 3.35
2665 9257 8.980596 TCTGGATCTTGCAAACCAAATATTATT 58.019 29.630 16.60 0.00 31.94 1.40
2666 9258 8.945481 TGGATCTTGCAAACCAAATATTATTG 57.055 30.769 14.50 0.00 31.94 1.90
2855 9452 4.625607 AATCCTAACCCAGCTAGCATAC 57.374 45.455 18.83 0.00 0.00 2.39
2856 9453 1.961394 TCCTAACCCAGCTAGCATACG 59.039 52.381 18.83 3.49 0.00 3.06
2866 9463 2.500098 AGCTAGCATACGTTTTCTCCCA 59.500 45.455 18.83 0.00 0.00 4.37
3097 9694 7.013274 CCGTATTTCCAATTGTTCCATCATAGT 59.987 37.037 4.43 0.00 0.00 2.12
3183 9780 1.747355 GCCCAGATTGATGACCAAGTG 59.253 52.381 0.00 0.00 38.31 3.16
3232 9829 4.640201 CACAAGAAGTCCCAAAAACAGAGA 59.360 41.667 0.00 0.00 0.00 3.10
3234 9831 5.125578 ACAAGAAGTCCCAAAAACAGAGAAC 59.874 40.000 0.00 0.00 0.00 3.01
3238 9835 5.520376 AGTCCCAAAAACAGAGAACAATG 57.480 39.130 0.00 0.00 0.00 2.82
3239 9836 4.051237 GTCCCAAAAACAGAGAACAATGC 58.949 43.478 0.00 0.00 0.00 3.56
3265 9862 4.040952 CCCCCTTTGTCATTATCGAGATCT 59.959 45.833 0.00 0.00 0.00 2.75
3406 10003 4.806936 CTGTGCTGCAGGGAAGAA 57.193 55.556 17.12 0.00 41.42 2.52
3424 10021 5.510690 GGAAGAAGCTAAGGATCCTAAGCTC 60.511 48.000 16.55 8.55 44.30 4.09
3498 10095 5.171147 ACATTCCGTCGTATCTTAGAGTG 57.829 43.478 0.00 0.00 0.00 3.51
3622 10219 8.844244 GGTACTTCATTTGCATTCTATGAGAAT 58.156 33.333 0.00 0.00 45.23 2.40
3954 10551 7.523873 CGAAAGGCCATAGATGAATGTCTAGTA 60.524 40.741 5.01 0.00 34.41 1.82
4036 10633 7.665559 TCTGCTTGTTCCTTCTGTAAATACAAT 59.334 33.333 0.00 0.00 35.50 2.71
4064 10661 1.558756 CTGATGCCCTCCAGAAGTCTT 59.441 52.381 0.00 0.00 32.37 3.01
4120 10717 3.438216 TCTCTCCAAAATGCATGGACA 57.562 42.857 0.00 0.00 41.98 4.02
4132 10729 7.834881 AAATGCATGGACAGATCATTAAGAT 57.165 32.000 0.00 0.00 40.48 2.40
4353 10950 5.243507 TGTTTAAATTCATCTCAGGCAGCAA 59.756 36.000 0.00 0.00 0.00 3.91
4369 10966 4.248058 GCAGCAATACCATTTTCTGCTTT 58.752 39.130 12.23 0.00 41.30 3.51
4413 11010 0.606673 GTCAGGTGTTCCCAGAAGCC 60.607 60.000 0.00 0.00 34.66 4.35
4506 11103 1.840635 GCTATTGTCTTGGTCCCCTCT 59.159 52.381 0.00 0.00 0.00 3.69
4552 11149 0.909610 TGCTACAAGCCAGGCTAGGT 60.910 55.000 16.56 18.50 41.51 3.08
4556 11153 1.448540 CAAGCCAGGCTAGGTCACG 60.449 63.158 16.56 0.00 38.25 4.35
4677 11274 6.205464 CACAAGGAGAAAGCAAGAGTAATTCA 59.795 38.462 0.00 0.00 0.00 2.57
5041 11638 5.853282 GCAATATATTGAATGCGTTCAGGAC 59.147 40.000 26.22 2.58 44.62 3.85
5110 11707 0.245539 CCATTTGGGCTCAAGCAGTG 59.754 55.000 0.00 0.00 44.36 3.66
5397 11994 0.817634 TTTCAGGCAGTTGACACCCG 60.818 55.000 0.00 0.00 0.00 5.28
5628 12225 5.479306 TGAAGCAGGTAACACAGTCTAATC 58.521 41.667 0.00 0.00 41.41 1.75
5680 12277 0.388907 GCAGTGTTCCGCGTAACCTA 60.389 55.000 12.25 0.00 0.00 3.08
5806 12403 9.706691 CCTTACACTAGAATTCAGTTTTGACTA 57.293 33.333 8.44 0.00 31.71 2.59
6041 12638 9.967451 TTTTTGATTATGGTAGTGTAATCTCCA 57.033 29.630 6.66 0.00 37.89 3.86
6060 12657 4.728772 TCCAAAACAAGACATGATCCTGT 58.271 39.130 3.00 3.00 33.07 4.00
6310 12907 7.280428 TCGACAATGTACTGTGGTTTTTAGAAA 59.720 33.333 0.00 0.00 0.00 2.52
6383 14973 3.266636 TGTCCACCATGCTTATGTTACG 58.733 45.455 0.00 0.00 0.00 3.18
6495 15085 9.149225 GTGTTGCCATTGAACATATTTTCATTA 57.851 29.630 5.17 0.00 35.42 1.90
6783 15374 5.063204 TGTTCACCTTCTCACTTGGTATTG 58.937 41.667 0.00 0.00 32.13 1.90
7011 15604 4.949856 GTCCCCCACATATATATTTGCCTG 59.050 45.833 3.70 0.00 0.00 4.85
7062 15655 5.917541 TTTTGACCACTGTATTCTTCGAC 57.082 39.130 0.00 0.00 0.00 4.20
7319 15912 2.497675 TGTCAGCAACTATCTGTCCTCC 59.502 50.000 0.00 0.00 33.48 4.30
7335 15928 4.020543 GTCCTCCAGTAGCATATCTAGGG 58.979 52.174 0.00 0.00 0.00 3.53
7620 16213 1.509923 GAACATGCAAGCAGCTCCC 59.490 57.895 0.00 0.00 45.94 4.30
7659 16252 1.890552 ACCAGATGGAGATGGCTCTT 58.109 50.000 5.72 0.00 40.45 2.85
7756 16349 4.114073 CTGAGAGAAGCAGATTAGCAGTG 58.886 47.826 0.00 0.00 35.39 3.66
7830 16423 4.250305 AGCACCAACCCGTTCGCT 62.250 61.111 0.00 0.00 0.00 4.93
7847 16440 0.235926 GCTGACGACAACTTCAAGGC 59.764 55.000 0.00 0.00 0.00 4.35
7942 16535 2.183555 CGTCAAGCCCCTACGACC 59.816 66.667 0.00 0.00 38.89 4.79
7959 16552 2.600729 CCACTTCCTCAGGGCTGCT 61.601 63.158 0.00 0.00 0.00 4.24
7983 16576 1.002430 TGCTGAGGCGAATGAGTTTCT 59.998 47.619 0.00 0.00 42.25 2.52
8199 16808 2.098117 CGGATTCAGCACCCATTCTTTC 59.902 50.000 0.00 0.00 0.00 2.62
8200 16809 2.428530 GGATTCAGCACCCATTCTTTCC 59.571 50.000 0.00 0.00 0.00 3.13
8201 16810 2.673775 TTCAGCACCCATTCTTTCCA 57.326 45.000 0.00 0.00 0.00 3.53
8202 16811 2.905415 TCAGCACCCATTCTTTCCAT 57.095 45.000 0.00 0.00 0.00 3.41
8203 16812 3.173953 TCAGCACCCATTCTTTCCATT 57.826 42.857 0.00 0.00 0.00 3.16
8204 16813 3.091545 TCAGCACCCATTCTTTCCATTC 58.908 45.455 0.00 0.00 0.00 2.67
8205 16814 3.094572 CAGCACCCATTCTTTCCATTCT 58.905 45.455 0.00 0.00 0.00 2.40
8206 16815 3.512724 CAGCACCCATTCTTTCCATTCTT 59.487 43.478 0.00 0.00 0.00 2.52
8207 16816 4.020839 CAGCACCCATTCTTTCCATTCTTT 60.021 41.667 0.00 0.00 0.00 2.52
8281 16890 2.544698 GCGACGCGTAGAGAGGGAT 61.545 63.158 23.92 0.00 0.00 3.85
8284 16893 0.739561 GACGCGTAGAGAGGGATTGT 59.260 55.000 13.97 0.00 0.00 2.71
8431 17050 2.370189 CTCCCCCATCTACCAGAACATC 59.630 54.545 0.00 0.00 0.00 3.06
8536 17163 4.721132 TCCTTCTTTCCATTTTGTACCGT 58.279 39.130 0.00 0.00 0.00 4.83
8554 17184 8.890124 TGTACCGTATTTAGCTATTGCATAAA 57.110 30.769 1.12 4.47 42.74 1.40
8631 17261 0.249398 GAAGGAGTGGCTCGGCTTAA 59.751 55.000 0.00 0.00 0.00 1.85
8632 17262 0.690762 AAGGAGTGGCTCGGCTTAAA 59.309 50.000 0.00 0.00 0.00 1.52
8633 17263 0.912486 AGGAGTGGCTCGGCTTAAAT 59.088 50.000 0.00 0.00 0.00 1.40
8634 17264 1.282157 AGGAGTGGCTCGGCTTAAATT 59.718 47.619 0.00 0.00 0.00 1.82
8635 17265 2.504175 AGGAGTGGCTCGGCTTAAATTA 59.496 45.455 0.00 0.00 0.00 1.40
8659 17289 3.482722 GCATTGCCAATAGATCGATGG 57.517 47.619 0.54 0.00 37.29 3.51
8663 17293 2.460330 CCAATAGATCGATGGCCGC 58.540 57.895 0.54 0.00 38.37 6.53
8664 17294 1.354337 CCAATAGATCGATGGCCGCG 61.354 60.000 0.54 11.22 38.37 6.46
8665 17295 0.667487 CAATAGATCGATGGCCGCGT 60.667 55.000 16.11 5.40 38.37 6.01
8666 17296 0.885879 AATAGATCGATGGCCGCGTA 59.114 50.000 16.11 3.89 38.37 4.42
8667 17297 0.170561 ATAGATCGATGGCCGCGTAC 59.829 55.000 16.11 11.58 38.37 3.67
8738 17374 2.158900 CCACCCTCATCGTGCTTATCTT 60.159 50.000 0.00 0.00 0.00 2.40
8764 17400 3.711704 GGTCATCTGGAATAGGAGGAACA 59.288 47.826 0.00 0.00 31.39 3.18
8767 17403 4.406972 TCATCTGGAATAGGAGGAACACTG 59.593 45.833 0.00 0.00 0.00 3.66
8770 17406 3.515502 CTGGAATAGGAGGAACACTGACA 59.484 47.826 0.00 0.00 0.00 3.58
8776 17412 2.569404 AGGAGGAACACTGACATCTTCC 59.431 50.000 0.00 0.00 39.06 3.46
8777 17413 2.303022 GGAGGAACACTGACATCTTCCA 59.697 50.000 8.07 0.00 38.73 3.53
8778 17414 3.244561 GGAGGAACACTGACATCTTCCAA 60.245 47.826 8.07 0.00 38.73 3.53
8787 17423 8.463930 ACACTGACATCTTCCAAAAGAAATTA 57.536 30.769 0.00 0.00 44.49 1.40
8806 17442 5.751243 ATTAACGCCACCATTCTACATTC 57.249 39.130 0.00 0.00 0.00 2.67
8827 17463 8.475639 ACATTCTAAAGCTTATAAAGGACGAGA 58.524 33.333 0.00 0.00 0.00 4.04
8829 17465 7.642082 TCTAAAGCTTATAAAGGACGAGACT 57.358 36.000 0.00 0.00 0.00 3.24
8846 17482 0.605589 ACTAAGCTTTGGGTCACCGC 60.606 55.000 3.20 0.00 40.75 5.68
8847 17483 0.605319 CTAAGCTTTGGGTCACCGCA 60.605 55.000 3.20 0.00 40.75 5.69
8877 17513 0.178767 ACTTGAGCGCTATCATGCCA 59.821 50.000 11.50 0.00 0.00 4.92
8883 17519 1.280886 GCGCTATCATGCCACGAGAG 61.281 60.000 0.00 0.00 0.00 3.20
8899 17535 5.769484 ACGAGAGTAATCGGTTGACATAT 57.231 39.130 0.00 0.00 46.91 1.78
8924 17560 6.696441 TTTTGTTTACGGGTTAGATGTTGT 57.304 33.333 0.00 0.00 0.00 3.32
8933 17569 2.076863 GTTAGATGTTGTGCCGCTTCT 58.923 47.619 0.00 0.00 0.00 2.85
8934 17570 3.259064 GTTAGATGTTGTGCCGCTTCTA 58.741 45.455 0.00 0.00 0.00 2.10
8935 17571 2.015736 AGATGTTGTGCCGCTTCTAG 57.984 50.000 0.00 0.00 0.00 2.43
8936 17572 0.375106 GATGTTGTGCCGCTTCTAGC 59.625 55.000 0.00 0.00 38.02 3.42
8937 17573 0.036010 ATGTTGTGCCGCTTCTAGCT 60.036 50.000 0.00 0.00 39.60 3.32
8938 17574 0.670546 TGTTGTGCCGCTTCTAGCTC 60.671 55.000 0.00 0.00 39.60 4.09
8939 17575 0.390472 GTTGTGCCGCTTCTAGCTCT 60.390 55.000 0.00 0.00 39.60 4.09
8940 17576 0.321671 TTGTGCCGCTTCTAGCTCTT 59.678 50.000 0.00 0.00 39.60 2.85
8941 17577 0.390340 TGTGCCGCTTCTAGCTCTTG 60.390 55.000 0.00 0.00 39.60 3.02
8942 17578 1.448540 TGCCGCTTCTAGCTCTTGC 60.449 57.895 0.00 0.00 39.60 4.01
8943 17579 2.176926 GCCGCTTCTAGCTCTTGCC 61.177 63.158 0.00 0.00 39.60 4.52
8944 17580 1.880340 CCGCTTCTAGCTCTTGCCG 60.880 63.158 0.00 0.00 39.60 5.69
8945 17581 2.520904 CGCTTCTAGCTCTTGCCGC 61.521 63.158 0.00 0.00 39.60 6.53
8946 17582 2.520904 GCTTCTAGCTCTTGCCGCG 61.521 63.158 0.00 0.00 38.45 6.46
8947 17583 1.153745 CTTCTAGCTCTTGCCGCGT 60.154 57.895 4.92 0.00 40.80 6.01
8948 17584 0.737715 CTTCTAGCTCTTGCCGCGTT 60.738 55.000 4.92 0.00 40.80 4.84
8949 17585 0.320421 TTCTAGCTCTTGCCGCGTTT 60.320 50.000 4.92 0.00 40.80 3.60
8950 17586 0.320421 TCTAGCTCTTGCCGCGTTTT 60.320 50.000 4.92 0.00 40.80 2.43
8951 17587 0.517316 CTAGCTCTTGCCGCGTTTTT 59.483 50.000 4.92 0.00 40.80 1.94
8952 17588 0.515564 TAGCTCTTGCCGCGTTTTTC 59.484 50.000 4.92 0.00 40.80 2.29
8953 17589 1.729484 GCTCTTGCCGCGTTTTTCC 60.729 57.895 4.92 0.00 0.00 3.13
8954 17590 1.652012 CTCTTGCCGCGTTTTTCCA 59.348 52.632 4.92 0.00 0.00 3.53
8955 17591 0.660300 CTCTTGCCGCGTTTTTCCAC 60.660 55.000 4.92 0.00 0.00 4.02
8956 17592 1.098712 TCTTGCCGCGTTTTTCCACT 61.099 50.000 4.92 0.00 0.00 4.00
8957 17593 0.660300 CTTGCCGCGTTTTTCCACTC 60.660 55.000 4.92 0.00 0.00 3.51
8958 17594 1.098712 TTGCCGCGTTTTTCCACTCT 61.099 50.000 4.92 0.00 0.00 3.24
8959 17595 1.206831 GCCGCGTTTTTCCACTCTC 59.793 57.895 4.92 0.00 0.00 3.20
8960 17596 1.503818 GCCGCGTTTTTCCACTCTCA 61.504 55.000 4.92 0.00 0.00 3.27
8961 17597 1.156736 CCGCGTTTTTCCACTCTCAT 58.843 50.000 4.92 0.00 0.00 2.90
8962 17598 1.535462 CCGCGTTTTTCCACTCTCATT 59.465 47.619 4.92 0.00 0.00 2.57
8963 17599 2.031157 CCGCGTTTTTCCACTCTCATTT 60.031 45.455 4.92 0.00 0.00 2.32
8964 17600 3.550030 CCGCGTTTTTCCACTCTCATTTT 60.550 43.478 4.92 0.00 0.00 1.82
8965 17601 4.319911 CCGCGTTTTTCCACTCTCATTTTA 60.320 41.667 4.92 0.00 0.00 1.52
8966 17602 5.390613 CGCGTTTTTCCACTCTCATTTTAT 58.609 37.500 0.00 0.00 0.00 1.40
8967 17603 5.856455 CGCGTTTTTCCACTCTCATTTTATT 59.144 36.000 0.00 0.00 0.00 1.40
8968 17604 6.362283 CGCGTTTTTCCACTCTCATTTTATTT 59.638 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.603455 GATGGTGGTGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
1 2 2.840753 GGATGGTGGTGGTGGTGGT 61.841 63.158 0.00 0.00 0.00 4.16
2 3 2.035626 GGATGGTGGTGGTGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
3 4 2.035626 GGGATGGTGGTGGTGGTG 59.964 66.667 0.00 0.00 0.00 4.17
4 5 3.646715 CGGGATGGTGGTGGTGGT 61.647 66.667 0.00 0.00 0.00 4.16
25 26 4.779733 TGGAGGGGAGGGAGACGC 62.780 72.222 0.00 0.00 0.00 5.19
26 27 2.760385 GTGGAGGGGAGGGAGACG 60.760 72.222 0.00 0.00 0.00 4.18
27 28 2.450243 TGTGGAGGGGAGGGAGAC 59.550 66.667 0.00 0.00 0.00 3.36
523 537 2.285220 GGAGTCGCGTACATTACTACGA 59.715 50.000 5.77 0.00 41.75 3.43
524 538 2.600792 GGGAGTCGCGTACATTACTACG 60.601 54.545 5.77 0.00 42.04 3.51
525 539 2.615912 AGGGAGTCGCGTACATTACTAC 59.384 50.000 5.77 0.73 0.00 2.73
538 552 1.660917 GGCGATAGGAAGGGAGTCG 59.339 63.158 0.00 0.00 35.56 4.18
560 574 1.298157 CGGCGTTCAATGAGGAAGCA 61.298 55.000 0.00 0.00 0.00 3.91
561 575 1.425428 CGGCGTTCAATGAGGAAGC 59.575 57.895 0.00 0.00 0.00 3.86
562 576 1.021390 AGCGGCGTTCAATGAGGAAG 61.021 55.000 9.37 0.00 0.00 3.46
564 578 0.248012 TAAGCGGCGTTCAATGAGGA 59.752 50.000 9.37 0.00 0.00 3.71
565 579 0.373716 GTAAGCGGCGTTCAATGAGG 59.626 55.000 9.37 0.00 0.00 3.86
567 581 0.388778 TCGTAAGCGGCGTTCAATGA 60.389 50.000 9.37 2.73 38.89 2.57
568 582 0.650512 ATCGTAAGCGGCGTTCAATG 59.349 50.000 9.37 0.06 38.89 2.82
569 583 1.365699 AATCGTAAGCGGCGTTCAAT 58.634 45.000 9.37 0.00 38.89 2.57
570 584 1.127213 GAAATCGTAAGCGGCGTTCAA 59.873 47.619 9.37 0.00 38.89 2.69
571 585 0.717224 GAAATCGTAAGCGGCGTTCA 59.283 50.000 9.37 0.00 38.89 3.18
572 586 0.314021 CGAAATCGTAAGCGGCGTTC 60.314 55.000 9.37 0.24 38.89 3.95
573 587 1.705727 CGAAATCGTAAGCGGCGTT 59.294 52.632 9.37 0.00 38.89 4.84
574 588 2.795389 GCGAAATCGTAAGCGGCGT 61.795 57.895 9.37 0.00 42.22 5.68
577 591 1.797964 CAAAGCGAAATCGTAAGCGG 58.202 50.000 4.59 0.00 42.22 5.52
579 593 1.535088 GGCAAAGCGAAATCGTAAGC 58.465 50.000 4.59 4.31 42.22 3.09
580 594 1.392168 TCGGCAAAGCGAAATCGTAAG 59.608 47.619 4.59 0.00 42.22 2.34
581 595 1.430479 TCGGCAAAGCGAAATCGTAA 58.570 45.000 4.59 0.00 42.22 3.18
582 596 1.591158 GATCGGCAAAGCGAAATCGTA 59.409 47.619 4.59 0.00 42.22 3.43
583 597 0.373716 GATCGGCAAAGCGAAATCGT 59.626 50.000 4.59 0.00 42.22 3.73
584 598 0.651610 CGATCGGCAAAGCGAAATCG 60.652 55.000 7.38 0.00 43.27 3.34
585 599 0.373716 ACGATCGGCAAAGCGAAATC 59.626 50.000 20.98 0.00 0.00 2.17
586 600 0.373716 GACGATCGGCAAAGCGAAAT 59.626 50.000 18.12 0.00 0.00 2.17
587 601 0.669318 AGACGATCGGCAAAGCGAAA 60.669 50.000 25.47 0.00 0.00 3.46
588 602 0.669318 AAGACGATCGGCAAAGCGAA 60.669 50.000 25.47 0.00 0.00 4.70
590 604 1.345176 GAAGACGATCGGCAAAGCG 59.655 57.895 25.47 0.00 0.00 4.68
606 672 0.387565 GTTTTGGGAGCTTTGCCGAA 59.612 50.000 0.00 0.00 0.00 4.30
615 681 2.491693 TGAATGGAATCGTTTTGGGAGC 59.508 45.455 0.00 0.00 0.00 4.70
625 691 9.658799 AATCTAGTATATTGGTGAATGGAATCG 57.341 33.333 0.00 0.00 0.00 3.34
631 697 8.394971 TGCCAAATCTAGTATATTGGTGAATG 57.605 34.615 15.07 0.00 43.36 2.67
633 699 8.849168 CAATGCCAAATCTAGTATATTGGTGAA 58.151 33.333 15.07 6.75 43.36 3.18
642 708 9.547753 CTAGTACAACAATGCCAAATCTAGTAT 57.452 33.333 0.00 0.00 0.00 2.12
643 709 8.755028 TCTAGTACAACAATGCCAAATCTAGTA 58.245 33.333 0.00 0.00 0.00 1.82
644 710 7.620880 TCTAGTACAACAATGCCAAATCTAGT 58.379 34.615 0.00 0.00 0.00 2.57
645 711 7.225538 CCTCTAGTACAACAATGCCAAATCTAG 59.774 40.741 0.00 0.00 0.00 2.43
646 712 7.047891 CCTCTAGTACAACAATGCCAAATCTA 58.952 38.462 0.00 0.00 0.00 1.98
647 713 5.882557 CCTCTAGTACAACAATGCCAAATCT 59.117 40.000 0.00 0.00 0.00 2.40
648 714 5.880332 TCCTCTAGTACAACAATGCCAAATC 59.120 40.000 0.00 0.00 0.00 2.17
649 715 5.815581 TCCTCTAGTACAACAATGCCAAAT 58.184 37.500 0.00 0.00 0.00 2.32
650 716 5.235850 TCCTCTAGTACAACAATGCCAAA 57.764 39.130 0.00 0.00 0.00 3.28
651 717 4.901197 TCCTCTAGTACAACAATGCCAA 57.099 40.909 0.00 0.00 0.00 4.52
652 718 4.384098 CCATCCTCTAGTACAACAATGCCA 60.384 45.833 0.00 0.00 0.00 4.92
653 719 4.130118 CCATCCTCTAGTACAACAATGCC 58.870 47.826 0.00 0.00 0.00 4.40
654 720 4.130118 CCCATCCTCTAGTACAACAATGC 58.870 47.826 0.00 0.00 0.00 3.56
655 721 5.359194 ACCCATCCTCTAGTACAACAATG 57.641 43.478 0.00 0.00 0.00 2.82
656 722 7.015682 CAGATACCCATCCTCTAGTACAACAAT 59.984 40.741 0.00 0.00 0.00 2.71
657 723 6.323996 CAGATACCCATCCTCTAGTACAACAA 59.676 42.308 0.00 0.00 0.00 2.83
658 724 5.833667 CAGATACCCATCCTCTAGTACAACA 59.166 44.000 0.00 0.00 0.00 3.33
659 725 5.244178 CCAGATACCCATCCTCTAGTACAAC 59.756 48.000 0.00 0.00 0.00 3.32
660 726 5.103215 ACCAGATACCCATCCTCTAGTACAA 60.103 44.000 0.00 0.00 0.00 2.41
661 727 4.419200 ACCAGATACCCATCCTCTAGTACA 59.581 45.833 0.00 0.00 0.00 2.90
662 728 5.000570 ACCAGATACCCATCCTCTAGTAC 57.999 47.826 0.00 0.00 0.00 2.73
663 729 4.263374 CGACCAGATACCCATCCTCTAGTA 60.263 50.000 0.00 0.00 0.00 1.82
664 730 3.498841 CGACCAGATACCCATCCTCTAGT 60.499 52.174 0.00 0.00 0.00 2.57
665 731 3.085533 CGACCAGATACCCATCCTCTAG 58.914 54.545 0.00 0.00 0.00 2.43
666 732 2.714793 TCGACCAGATACCCATCCTCTA 59.285 50.000 0.00 0.00 0.00 2.43
667 733 1.499438 TCGACCAGATACCCATCCTCT 59.501 52.381 0.00 0.00 0.00 3.69
668 734 1.996798 TCGACCAGATACCCATCCTC 58.003 55.000 0.00 0.00 0.00 3.71
669 735 2.530701 GATCGACCAGATACCCATCCT 58.469 52.381 0.00 0.00 40.26 3.24
670 736 1.202582 CGATCGACCAGATACCCATCC 59.797 57.143 10.26 0.00 40.26 3.51
671 737 2.160205 TCGATCGACCAGATACCCATC 58.840 52.381 15.15 0.00 40.26 3.51
672 738 2.287977 TCGATCGACCAGATACCCAT 57.712 50.000 15.15 0.00 40.26 4.00
673 739 2.160205 GATCGATCGACCAGATACCCA 58.840 52.381 22.06 0.00 40.26 4.51
674 740 2.923605 GATCGATCGACCAGATACCC 57.076 55.000 22.06 0.00 40.26 3.69
686 752 2.140034 GAGCTGCAACGCGATCGATC 62.140 60.000 21.57 15.68 39.41 3.69
687 753 2.202797 AGCTGCAACGCGATCGAT 60.203 55.556 21.57 0.00 39.41 3.59
688 754 2.880879 GAGCTGCAACGCGATCGA 60.881 61.111 21.57 0.00 39.41 3.59
689 755 4.257376 CGAGCTGCAACGCGATCG 62.257 66.667 15.93 11.69 42.43 3.69
690 756 2.880879 TCGAGCTGCAACGCGATC 60.881 61.111 15.93 0.91 36.94 3.69
691 757 2.202797 ATCGAGCTGCAACGCGAT 60.203 55.556 20.71 20.71 45.42 4.58
692 758 1.565156 AAAATCGAGCTGCAACGCGA 61.565 50.000 17.93 17.93 45.70 5.87
693 759 1.154413 AAAATCGAGCTGCAACGCG 60.154 52.632 3.53 3.53 34.40 6.01
694 760 0.110238 TCAAAATCGAGCTGCAACGC 60.110 50.000 12.78 0.00 0.00 4.84
695 761 2.532531 ATCAAAATCGAGCTGCAACG 57.467 45.000 1.02 7.67 0.00 4.10
696 762 4.143263 CCAAAATCAAAATCGAGCTGCAAC 60.143 41.667 1.02 0.00 0.00 4.17
697 763 3.989167 CCAAAATCAAAATCGAGCTGCAA 59.011 39.130 1.02 0.00 0.00 4.08
698 764 3.005684 ACCAAAATCAAAATCGAGCTGCA 59.994 39.130 1.02 0.00 0.00 4.41
699 765 3.578688 ACCAAAATCAAAATCGAGCTGC 58.421 40.909 0.00 0.00 0.00 5.25
700 766 4.321745 CGAACCAAAATCAAAATCGAGCTG 59.678 41.667 0.00 0.00 0.00 4.24
701 767 4.475944 CGAACCAAAATCAAAATCGAGCT 58.524 39.130 0.00 0.00 0.00 4.09
702 768 3.059438 GCGAACCAAAATCAAAATCGAGC 59.941 43.478 0.00 0.00 0.00 5.03
703 769 3.608073 GGCGAACCAAAATCAAAATCGAG 59.392 43.478 0.00 0.00 35.26 4.04
704 770 3.570559 GGCGAACCAAAATCAAAATCGA 58.429 40.909 0.00 0.00 35.26 3.59
705 771 2.666022 GGGCGAACCAAAATCAAAATCG 59.334 45.455 0.00 0.00 39.85 3.34
718 784 1.217882 CTGATAACGATGGGCGAACC 58.782 55.000 0.00 0.00 44.57 3.62
719 785 0.582005 GCTGATAACGATGGGCGAAC 59.418 55.000 0.00 0.00 44.57 3.95
720 786 0.176910 TGCTGATAACGATGGGCGAA 59.823 50.000 0.00 0.00 44.57 4.70
721 787 0.176910 TTGCTGATAACGATGGGCGA 59.823 50.000 0.00 0.00 44.57 5.54
723 789 1.268743 GCTTTGCTGATAACGATGGGC 60.269 52.381 0.00 0.00 0.00 5.36
724 790 2.289002 GAGCTTTGCTGATAACGATGGG 59.711 50.000 0.00 0.00 39.88 4.00
725 791 2.289002 GGAGCTTTGCTGATAACGATGG 59.711 50.000 0.00 0.00 39.88 3.51
726 792 2.289002 GGGAGCTTTGCTGATAACGATG 59.711 50.000 0.00 0.00 39.88 3.84
727 793 2.092968 TGGGAGCTTTGCTGATAACGAT 60.093 45.455 0.00 0.00 39.88 3.73
728 794 1.277842 TGGGAGCTTTGCTGATAACGA 59.722 47.619 0.00 0.00 39.88 3.85
729 795 1.737838 TGGGAGCTTTGCTGATAACG 58.262 50.000 0.00 0.00 39.88 3.18
730 796 4.158394 TCATTTGGGAGCTTTGCTGATAAC 59.842 41.667 0.00 0.00 39.88 1.89
731 797 4.158394 GTCATTTGGGAGCTTTGCTGATAA 59.842 41.667 0.00 0.00 39.88 1.75
732 798 3.696051 GTCATTTGGGAGCTTTGCTGATA 59.304 43.478 0.00 0.00 39.88 2.15
733 799 2.494870 GTCATTTGGGAGCTTTGCTGAT 59.505 45.455 0.00 0.00 39.88 2.90
734 800 1.888512 GTCATTTGGGAGCTTTGCTGA 59.111 47.619 0.00 0.00 39.88 4.26
735 801 1.401931 CGTCATTTGGGAGCTTTGCTG 60.402 52.381 0.00 0.00 39.88 4.41
736 802 0.883833 CGTCATTTGGGAGCTTTGCT 59.116 50.000 0.00 0.00 43.88 3.91
737 803 0.733909 GCGTCATTTGGGAGCTTTGC 60.734 55.000 0.00 0.00 0.00 3.68
738 804 0.454957 CGCGTCATTTGGGAGCTTTG 60.455 55.000 0.00 0.00 0.00 2.77
739 805 0.889186 ACGCGTCATTTGGGAGCTTT 60.889 50.000 5.58 0.00 0.00 3.51
740 806 0.889186 AACGCGTCATTTGGGAGCTT 60.889 50.000 14.44 0.00 0.00 3.74
741 807 0.889186 AAACGCGTCATTTGGGAGCT 60.889 50.000 14.44 0.00 0.00 4.09
742 808 0.454452 GAAACGCGTCATTTGGGAGC 60.454 55.000 14.44 0.00 0.00 4.70
743 809 0.871722 TGAAACGCGTCATTTGGGAG 59.128 50.000 14.44 0.00 0.00 4.30
744 810 0.589223 GTGAAACGCGTCATTTGGGA 59.411 50.000 14.44 0.00 0.00 4.37
745 811 0.591170 AGTGAAACGCGTCATTTGGG 59.409 50.000 14.44 0.00 45.86 4.12
746 812 3.740044 ATAGTGAAACGCGTCATTTGG 57.260 42.857 14.44 0.00 45.86 3.28
747 813 4.320690 CCAAATAGTGAAACGCGTCATTTG 59.679 41.667 14.44 18.76 45.86 2.32
748 814 4.472286 CCAAATAGTGAAACGCGTCATTT 58.528 39.130 14.44 2.34 45.86 2.32
749 815 3.119990 CCCAAATAGTGAAACGCGTCATT 60.120 43.478 14.44 3.30 45.86 2.57
750 816 2.418628 CCCAAATAGTGAAACGCGTCAT 59.581 45.455 14.44 4.26 45.86 3.06
751 817 1.801771 CCCAAATAGTGAAACGCGTCA 59.198 47.619 14.44 3.81 45.86 4.35
752 818 1.129811 CCCCAAATAGTGAAACGCGTC 59.870 52.381 14.44 0.25 45.86 5.19
753 819 1.161843 CCCCAAATAGTGAAACGCGT 58.838 50.000 5.58 5.58 45.86 6.01
754 820 0.450184 CCCCCAAATAGTGAAACGCG 59.550 55.000 3.53 3.53 45.86 6.01
755 821 1.541379 ACCCCCAAATAGTGAAACGC 58.459 50.000 0.00 0.00 45.86 4.84
756 822 3.057806 GTCAACCCCCAAATAGTGAAACG 60.058 47.826 0.00 0.00 45.86 3.60
757 823 3.257375 GGTCAACCCCCAAATAGTGAAAC 59.743 47.826 0.00 0.00 0.00 2.78
758 824 3.117093 TGGTCAACCCCCAAATAGTGAAA 60.117 43.478 0.00 0.00 34.29 2.69
759 825 2.447429 TGGTCAACCCCCAAATAGTGAA 59.553 45.455 0.00 0.00 34.29 3.18
760 826 2.066592 TGGTCAACCCCCAAATAGTGA 58.933 47.619 0.00 0.00 34.29 3.41
761 827 2.595750 TGGTCAACCCCCAAATAGTG 57.404 50.000 0.00 0.00 34.29 2.74
762 828 3.621682 TTTGGTCAACCCCCAAATAGT 57.378 42.857 0.64 0.00 44.81 2.12
767 833 2.182516 ACATTTTGGTCAACCCCCAA 57.817 45.000 0.00 0.00 40.15 4.12
768 834 2.883026 CTACATTTTGGTCAACCCCCA 58.117 47.619 0.00 0.00 34.29 4.96
769 835 1.548719 GCTACATTTTGGTCAACCCCC 59.451 52.381 0.00 0.00 34.29 5.40
773 839 6.589907 CCAAATAAGGCTACATTTTGGTCAAC 59.410 38.462 16.27 0.00 40.77 3.18
790 856 2.953161 GCCCCCAACCCTACCAAATAAG 60.953 54.545 0.00 0.00 0.00 1.73
792 858 0.632294 GCCCCCAACCCTACCAAATA 59.368 55.000 0.00 0.00 0.00 1.40
803 870 4.966787 TGCTGGTTCGCCCCCAAC 62.967 66.667 0.00 0.00 36.08 3.77
823 890 4.398988 ACAAATAGATTTCATGGCAAGCGA 59.601 37.500 0.00 0.00 0.00 4.93
824 891 4.675510 ACAAATAGATTTCATGGCAAGCG 58.324 39.130 0.00 0.00 0.00 4.68
826 893 5.292589 GCCAACAAATAGATTTCATGGCAAG 59.707 40.000 23.31 0.00 46.90 4.01
828 895 4.757594 GCCAACAAATAGATTTCATGGCA 58.242 39.130 23.31 0.00 46.90 4.92
830 897 6.038356 GTCAGCCAACAAATAGATTTCATGG 58.962 40.000 9.66 9.66 36.41 3.66
831 898 6.038356 GGTCAGCCAACAAATAGATTTCATG 58.962 40.000 0.00 0.00 34.09 3.07
832 899 5.163622 CGGTCAGCCAACAAATAGATTTCAT 60.164 40.000 0.00 0.00 34.09 2.57
833 900 4.155826 CGGTCAGCCAACAAATAGATTTCA 59.844 41.667 0.00 0.00 34.09 2.69
834 901 4.394920 TCGGTCAGCCAACAAATAGATTTC 59.605 41.667 0.00 0.00 34.09 2.17
837 904 3.627395 TCGGTCAGCCAACAAATAGAT 57.373 42.857 0.00 0.00 34.09 1.98
838 905 3.531538 GATCGGTCAGCCAACAAATAGA 58.468 45.455 0.00 0.00 34.09 1.98
839 906 2.614057 GGATCGGTCAGCCAACAAATAG 59.386 50.000 0.00 0.00 34.09 1.73
840 907 2.238646 AGGATCGGTCAGCCAACAAATA 59.761 45.455 0.00 0.00 34.09 1.40
842 909 0.400213 AGGATCGGTCAGCCAACAAA 59.600 50.000 0.00 0.00 34.09 2.83
844 911 1.296392 CAGGATCGGTCAGCCAACA 59.704 57.895 0.00 0.00 34.09 3.33
845 912 1.450312 CCAGGATCGGTCAGCCAAC 60.450 63.158 0.00 0.00 34.09 3.77
846 913 2.989639 CCAGGATCGGTCAGCCAA 59.010 61.111 0.00 0.00 34.09 4.52
847 914 3.785859 GCCAGGATCGGTCAGCCA 61.786 66.667 0.00 0.00 34.09 4.75
848 915 3.329542 TTGCCAGGATCGGTCAGCC 62.330 63.158 0.00 0.00 0.00 4.85
850 917 0.036010 AACTTGCCAGGATCGGTCAG 60.036 55.000 0.00 0.00 0.00 3.51
852 919 1.480954 TCTAACTTGCCAGGATCGGTC 59.519 52.381 0.00 0.00 0.00 4.79
853 920 1.207329 GTCTAACTTGCCAGGATCGGT 59.793 52.381 0.00 0.00 0.00 4.69
854 921 1.207089 TGTCTAACTTGCCAGGATCGG 59.793 52.381 0.00 0.00 0.00 4.18
863 951 1.082690 GGCTGCTCTGTCTAACTTGC 58.917 55.000 0.00 0.00 0.00 4.01
865 953 2.289945 CCAAGGCTGCTCTGTCTAACTT 60.290 50.000 0.00 0.00 0.00 2.66
870 958 1.845205 ACCCAAGGCTGCTCTGTCT 60.845 57.895 0.00 0.00 0.00 3.41
871 959 1.673665 CACCCAAGGCTGCTCTGTC 60.674 63.158 0.00 0.00 0.00 3.51
874 962 0.825010 CAAACACCCAAGGCTGCTCT 60.825 55.000 0.00 0.00 0.00 4.09
877 965 2.029518 GCAAACACCCAAGGCTGC 59.970 61.111 0.00 0.00 0.00 5.25
879 967 0.393820 CAATGCAAACACCCAAGGCT 59.606 50.000 0.00 0.00 0.00 4.58
894 982 7.412063 TCAAATTTCTAGCGATGTCATCAATG 58.588 34.615 13.22 0.00 0.00 2.82
896 984 6.983474 TCAAATTTCTAGCGATGTCATCAA 57.017 33.333 13.22 0.00 0.00 2.57
897 985 6.983474 TTCAAATTTCTAGCGATGTCATCA 57.017 33.333 13.22 0.00 0.00 3.07
899 987 7.558161 TGATTCAAATTTCTAGCGATGTCAT 57.442 32.000 0.00 0.00 0.00 3.06
900 988 6.983474 TGATTCAAATTTCTAGCGATGTCA 57.017 33.333 0.00 0.00 0.00 3.58
901 989 7.633621 TCATGATTCAAATTTCTAGCGATGTC 58.366 34.615 0.00 0.00 0.00 3.06
902 990 7.558161 TCATGATTCAAATTTCTAGCGATGT 57.442 32.000 0.00 0.00 0.00 3.06
903 991 8.074370 ACATCATGATTCAAATTTCTAGCGATG 58.926 33.333 5.16 0.00 0.00 3.84
904 992 8.074370 CACATCATGATTCAAATTTCTAGCGAT 58.926 33.333 5.16 0.00 0.00 4.58
906 994 7.191551 ACACATCATGATTCAAATTTCTAGCG 58.808 34.615 5.16 0.00 0.00 4.26
907 995 8.922058 AACACATCATGATTCAAATTTCTAGC 57.078 30.769 5.16 0.00 0.00 3.42
918 1006 7.461807 CGCACATTTACAAACACATCATGATTC 60.462 37.037 5.16 0.00 0.00 2.52
919 1007 6.308524 CGCACATTTACAAACACATCATGATT 59.691 34.615 5.16 0.00 0.00 2.57
920 1008 5.801444 CGCACATTTACAAACACATCATGAT 59.199 36.000 1.18 1.18 0.00 2.45
921 1009 5.152804 CGCACATTTACAAACACATCATGA 58.847 37.500 0.00 0.00 0.00 3.07
922 1010 4.916831 ACGCACATTTACAAACACATCATG 59.083 37.500 0.00 0.00 0.00 3.07
924 1012 4.560136 ACGCACATTTACAAACACATCA 57.440 36.364 0.00 0.00 0.00 3.07
925 1013 4.737765 ACAACGCACATTTACAAACACATC 59.262 37.500 0.00 0.00 0.00 3.06
926 1014 4.677584 ACAACGCACATTTACAAACACAT 58.322 34.783 0.00 0.00 0.00 3.21
927 1015 4.098055 ACAACGCACATTTACAAACACA 57.902 36.364 0.00 0.00 0.00 3.72
928 1016 5.170625 CACTACAACGCACATTTACAAACAC 59.829 40.000 0.00 0.00 0.00 3.32
929 1017 5.064834 TCACTACAACGCACATTTACAAACA 59.935 36.000 0.00 0.00 0.00 2.83
930 1018 5.394322 GTCACTACAACGCACATTTACAAAC 59.606 40.000 0.00 0.00 0.00 2.93
931 1019 5.064834 TGTCACTACAACGCACATTTACAAA 59.935 36.000 0.00 0.00 30.91 2.83
932 1020 4.571176 TGTCACTACAACGCACATTTACAA 59.429 37.500 0.00 0.00 30.91 2.41
933 1021 4.025563 GTGTCACTACAACGCACATTTACA 60.026 41.667 0.00 0.00 37.36 2.41
934 1022 4.210537 AGTGTCACTACAACGCACATTTAC 59.789 41.667 2.87 0.00 37.36 2.01
936 1024 3.202906 AGTGTCACTACAACGCACATTT 58.797 40.909 2.87 0.00 37.36 2.32
948 1072 8.560355 AATGCACATGTTAATTAGTGTCACTA 57.440 30.769 8.70 8.70 34.59 2.74
1162 6834 1.948104 CCGGAACATCGGCTAATTGA 58.052 50.000 0.00 0.00 43.71 2.57
1212 6893 4.935205 TCATTTGGTTCTTCGTCCTACATG 59.065 41.667 0.00 0.00 0.00 3.21
1823 8412 7.436430 TGTAAACACAAAATAGGCGTTATGA 57.564 32.000 0.00 0.00 0.00 2.15
2039 8628 8.370182 ACTTCTTCACCATTTTTAGCAATCAAT 58.630 29.630 0.00 0.00 0.00 2.57
2114 8703 6.735678 ATGCGTGTCAGATGTGTTATTTTA 57.264 33.333 0.00 0.00 0.00 1.52
2303 8892 8.552034 GTTCTAACTATTTTCTGAATCGGATGG 58.448 37.037 0.00 0.00 0.00 3.51
2346 8935 6.630203 TTTAGTTAGCATTTACTCCCTCCA 57.370 37.500 0.00 0.00 0.00 3.86
2382 8971 8.553153 TGGGAAACAGTAAATGGATATCAAGTA 58.447 33.333 4.83 0.00 0.00 2.24
2389 8980 6.785076 TCAGTTGGGAAACAGTAAATGGATA 58.215 36.000 0.00 0.00 0.00 2.59
2509 9100 7.554476 GGAGCACAAATAGAAGACCTAGAAAAT 59.446 37.037 0.00 0.00 0.00 1.82
2546 9138 6.990341 TTTACATCATTCATGTGAGTCCTG 57.010 37.500 0.00 0.00 45.98 3.86
2594 9186 4.570930 AGCTTGAGGAAAGTAGTTAGTGC 58.429 43.478 0.00 0.00 38.25 4.40
2634 9226 3.507233 TGGTTTGCAAGATCCAGATGTTC 59.493 43.478 13.49 0.00 0.00 3.18
2855 9452 7.611213 AAGTGTAAATAGATGGGAGAAAACG 57.389 36.000 0.00 0.00 0.00 3.60
3046 9643 4.110036 ACTTGTGCAAGGAGTTGAAAAC 57.890 40.909 15.31 0.00 44.35 2.43
3183 9780 5.712152 ATTCATTGTCTGGAACTTTGGTC 57.288 39.130 0.00 0.00 0.00 4.02
3232 9829 0.190815 ACAAAGGGGGAGGCATTGTT 59.809 50.000 0.00 0.00 30.50 2.83
3234 9831 0.251742 TGACAAAGGGGGAGGCATTG 60.252 55.000 0.00 0.00 0.00 2.82
3238 9835 2.587522 GATAATGACAAAGGGGGAGGC 58.412 52.381 0.00 0.00 0.00 4.70
3239 9836 2.438021 TCGATAATGACAAAGGGGGAGG 59.562 50.000 0.00 0.00 0.00 4.30
3265 9862 0.339859 ACTATGCTCTCCCAGGTGGA 59.660 55.000 0.00 0.00 42.41 4.02
3424 10021 1.271001 TGCACACAGATTCTGGACCAG 60.271 52.381 15.99 15.99 35.51 4.00
3498 10095 1.358759 CCAAAGCACCGGAACACAC 59.641 57.895 9.46 0.00 0.00 3.82
3774 10371 1.407989 GCAAGGATAGCTGCCACTTCT 60.408 52.381 9.75 0.00 32.18 2.85
3948 10545 4.838986 ACCTTCTTTGCCAGTTCTACTAGA 59.161 41.667 0.00 0.00 0.00 2.43
3954 10551 4.373156 ACATACCTTCTTTGCCAGTTCT 57.627 40.909 0.00 0.00 0.00 3.01
4036 10633 5.708736 TCTGGAGGGCATCAGTTAAAATA 57.291 39.130 0.08 0.00 33.13 1.40
4506 11103 4.624604 GCTTGAAGTATAGGGGAAACGGAA 60.625 45.833 0.00 0.00 0.00 4.30
4552 11149 1.068434 TGTTCTCTGCATGTCACGTGA 59.932 47.619 15.76 15.76 0.00 4.35
4677 11274 1.594293 CTCTTCACCAACGCCGTGT 60.594 57.895 0.00 0.00 32.86 4.49
5041 11638 4.361451 ACTCAACTTCAGCAAAAGTGTG 57.639 40.909 4.70 6.03 39.40 3.82
5110 11707 1.067213 GCAGGAGTGTTCTCAGGAGAC 60.067 57.143 0.00 0.00 42.05 3.36
5171 11768 4.321230 GGTTACCTTGCATCCAGAAAACAG 60.321 45.833 0.00 0.00 0.00 3.16
5509 12106 3.829026 AGAGCAAAGGAAGGAAAACCATC 59.171 43.478 0.00 0.00 0.00 3.51
5806 12403 8.345724 ACAGAAAACTCAGATAGATGCAAAAT 57.654 30.769 0.00 0.00 0.00 1.82
5814 12411 9.052759 GGTTAACAAACAGAAAACTCAGATAGA 57.947 33.333 8.10 0.00 0.00 1.98
6036 12633 5.005740 CAGGATCATGTCTTGTTTTGGAGA 58.994 41.667 0.00 0.00 0.00 3.71
6041 12638 6.713762 TTTCACAGGATCATGTCTTGTTTT 57.286 33.333 10.64 0.00 43.88 2.43
6495 15085 7.332926 GTCTATGTCAACATGAAGTGAAGATGT 59.667 37.037 0.00 0.00 37.15 3.06
6883 15474 1.450134 GCACATGTCATCGGGAGCA 60.450 57.895 0.00 0.00 0.00 4.26
7011 15604 4.290969 GTGGTTTCAGAAGTAAAAGCTGC 58.709 43.478 0.00 0.00 34.73 5.25
7062 15655 7.417612 ACACACTCAATTAGCAACAAAAGTAG 58.582 34.615 0.00 0.00 0.00 2.57
7319 15912 8.995027 AGATAATCTCCCTAGATATGCTACTG 57.005 38.462 0.00 0.00 41.81 2.74
7536 16129 2.439156 AGGGCTTCGCATTGGCTC 60.439 61.111 0.00 0.00 38.10 4.70
7632 16225 1.077212 CTCCATCTGGTTGGGCTGG 60.077 63.158 0.00 0.00 37.37 4.85
7659 16252 1.653094 GCAACGGCGGATCATGGAAA 61.653 55.000 13.24 0.00 0.00 3.13
7770 16363 1.507141 AAGCCTCGTTGGTTTCAGCG 61.507 55.000 0.00 0.00 46.58 5.18
7818 16411 2.355363 TCGTCAGCGAACGGGTTG 60.355 61.111 12.85 0.00 44.92 3.77
7830 16423 2.325583 AAGCCTTGAAGTTGTCGTCA 57.674 45.000 0.00 0.00 0.00 4.35
7847 16440 3.572584 GTGTTCGTGTACTCAGGGTAAG 58.427 50.000 0.00 0.00 31.56 2.34
7942 16535 1.376942 CAGCAGCCCTGAGGAAGTG 60.377 63.158 0.00 0.00 44.64 3.16
7959 16552 2.437180 CATTCGCCTCAGCAGCCA 60.437 61.111 0.00 0.00 39.83 4.75
7996 16592 1.966972 CAGACTTGCTGCTGCTGCT 60.967 57.895 27.67 11.62 37.90 4.24
7997 16593 2.561885 CAGACTTGCTGCTGCTGC 59.438 61.111 22.51 22.51 37.90 5.25
8004 16600 2.766844 CGTGACACGACAGACTTGCTG 61.767 57.143 23.39 0.00 46.05 4.41
8281 16890 4.284550 GGCACTGCTCCCCCACAA 62.285 66.667 0.00 0.00 0.00 3.33
8284 16893 3.650950 GAAGGCACTGCTCCCCCA 61.651 66.667 0.00 0.00 40.86 4.96
8306 16915 2.494471 ACATGGATGCACACAATTCTGG 59.506 45.455 0.00 0.00 0.00 3.86
8312 16931 5.474876 TGTTATGTTACATGGATGCACACAA 59.525 36.000 8.26 0.00 30.02 3.33
8400 17019 4.473922 GGTAGATGGGGGAGTACTTCTTTT 59.526 45.833 0.01 0.00 0.00 2.27
8431 17050 4.665833 ACAATGGCAATCATTCAGATGG 57.334 40.909 0.00 0.00 43.70 3.51
8475 17102 3.697542 TGTCAGGCCAAATTCAGATCATG 59.302 43.478 5.01 0.00 0.00 3.07
8536 17163 9.773328 GCGATGAATTTATGCAATAGCTAAATA 57.227 29.630 0.00 0.00 42.74 1.40
8554 17184 1.477553 AGGCCACAATTGCGATGAAT 58.522 45.000 5.01 0.00 0.00 2.57
8556 17186 1.948834 CATAGGCCACAATTGCGATGA 59.051 47.619 5.01 0.00 0.00 2.92
8559 17189 0.679321 TGCATAGGCCACAATTGCGA 60.679 50.000 5.01 0.00 40.13 5.10
8587 17217 0.951040 CCTCCACACTCGCAACCTTC 60.951 60.000 0.00 0.00 0.00 3.46
8589 17219 1.194781 ATCCTCCACACTCGCAACCT 61.195 55.000 0.00 0.00 0.00 3.50
8590 17220 1.021390 CATCCTCCACACTCGCAACC 61.021 60.000 0.00 0.00 0.00 3.77
8647 17277 0.885879 TACGCGGCCATCGATCTATT 59.114 50.000 19.61 0.55 42.43 1.73
8655 17285 1.421410 CTTGACAGTACGCGGCCATC 61.421 60.000 12.47 1.54 0.00 3.51
8656 17286 1.447838 CTTGACAGTACGCGGCCAT 60.448 57.895 12.47 0.00 0.00 4.40
8657 17287 2.048597 CTTGACAGTACGCGGCCA 60.049 61.111 12.47 0.00 0.00 5.36
8658 17288 0.739813 ATTCTTGACAGTACGCGGCC 60.740 55.000 12.47 0.00 0.00 6.13
8659 17289 1.076332 AATTCTTGACAGTACGCGGC 58.924 50.000 12.47 2.30 0.00 6.53
8660 17290 1.393539 CCAATTCTTGACAGTACGCGG 59.606 52.381 12.47 0.00 0.00 6.46
8661 17291 2.066262 ACCAATTCTTGACAGTACGCG 58.934 47.619 3.53 3.53 0.00 6.01
8662 17292 2.159627 CCACCAATTCTTGACAGTACGC 59.840 50.000 0.00 0.00 0.00 4.42
8663 17293 3.432252 GTCCACCAATTCTTGACAGTACG 59.568 47.826 0.00 0.00 0.00 3.67
8664 17294 3.751698 GGTCCACCAATTCTTGACAGTAC 59.248 47.826 0.00 0.00 35.64 2.73
8665 17295 3.392947 TGGTCCACCAATTCTTGACAGTA 59.607 43.478 0.00 0.00 44.35 2.74
8666 17296 2.174639 TGGTCCACCAATTCTTGACAGT 59.825 45.455 0.00 0.00 44.35 3.55
8667 17297 2.862541 TGGTCCACCAATTCTTGACAG 58.137 47.619 0.00 0.00 44.35 3.51
8738 17374 3.459598 CCTCCTATTCCAGATGACCCAAA 59.540 47.826 0.00 0.00 0.00 3.28
8764 17400 8.076178 CGTTAATTTCTTTTGGAAGATGTCAGT 58.924 33.333 0.00 0.00 41.35 3.41
8767 17403 6.308041 GGCGTTAATTTCTTTTGGAAGATGTC 59.692 38.462 0.00 0.00 41.35 3.06
8770 17406 6.156519 GTGGCGTTAATTTCTTTTGGAAGAT 58.843 36.000 0.00 0.00 41.35 2.40
8776 17412 5.925969 AGAATGGTGGCGTTAATTTCTTTTG 59.074 36.000 0.00 0.00 0.00 2.44
8777 17413 6.096673 AGAATGGTGGCGTTAATTTCTTTT 57.903 33.333 0.00 0.00 0.00 2.27
8778 17414 5.722021 AGAATGGTGGCGTTAATTTCTTT 57.278 34.783 0.00 0.00 0.00 2.52
8787 17423 3.350219 AGAATGTAGAATGGTGGCGTT 57.650 42.857 0.00 0.00 0.00 4.84
8806 17442 9.453325 CTTAGTCTCGTCCTTTATAAGCTTTAG 57.547 37.037 3.20 0.00 0.00 1.85
8818 17454 2.028020 CCCAAAGCTTAGTCTCGTCCTT 60.028 50.000 0.00 0.00 0.00 3.36
8823 17459 2.338500 GTGACCCAAAGCTTAGTCTCG 58.662 52.381 19.22 1.53 0.00 4.04
8827 17463 0.605589 GCGGTGACCCAAAGCTTAGT 60.606 55.000 0.00 0.00 0.00 2.24
8829 17465 0.605319 CTGCGGTGACCCAAAGCTTA 60.605 55.000 0.00 0.00 0.00 3.09
8846 17482 0.461693 GCTCAAGTGCCTAGCTCCTG 60.462 60.000 0.00 0.00 33.40 3.86
8847 17483 1.904032 GCTCAAGTGCCTAGCTCCT 59.096 57.895 0.00 0.00 33.40 3.69
8877 17513 5.769484 ATATGTCAACCGATTACTCTCGT 57.231 39.130 0.00 0.00 36.93 4.18
8908 17544 1.404449 CGGCACAACATCTAACCCGTA 60.404 52.381 0.00 0.00 0.00 4.02
8914 17550 2.472695 AGAAGCGGCACAACATCTAA 57.527 45.000 1.45 0.00 0.00 2.10
8933 17569 0.515564 GAAAAACGCGGCAAGAGCTA 59.484 50.000 12.47 0.00 41.70 3.32
8934 17570 1.282875 GAAAAACGCGGCAAGAGCT 59.717 52.632 12.47 0.00 41.70 4.09
8935 17571 1.729484 GGAAAAACGCGGCAAGAGC 60.729 57.895 12.47 0.00 41.10 4.09
8936 17572 0.660300 GTGGAAAAACGCGGCAAGAG 60.660 55.000 12.47 0.00 0.00 2.85
8937 17573 1.098712 AGTGGAAAAACGCGGCAAGA 61.099 50.000 12.47 0.00 0.00 3.02
8938 17574 0.660300 GAGTGGAAAAACGCGGCAAG 60.660 55.000 12.47 0.00 0.00 4.01
8939 17575 1.098712 AGAGTGGAAAAACGCGGCAA 61.099 50.000 12.47 0.00 0.00 4.52
8940 17576 1.503818 GAGAGTGGAAAAACGCGGCA 61.504 55.000 12.47 0.00 0.00 5.69
8941 17577 1.206831 GAGAGTGGAAAAACGCGGC 59.793 57.895 12.47 0.00 0.00 6.53
8942 17578 1.156736 ATGAGAGTGGAAAAACGCGG 58.843 50.000 12.47 0.00 0.00 6.46
8943 17579 2.969443 AATGAGAGTGGAAAAACGCG 57.031 45.000 3.53 3.53 0.00 6.01
8944 17580 7.637709 AAATAAAATGAGAGTGGAAAAACGC 57.362 32.000 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.