Multiple sequence alignment - TraesCS7A01G417800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G417800 chr7A 100.000 3082 0 0 1 3082 609340989 609337908 0.000000e+00 5692
1 TraesCS7A01G417800 chr7A 90.024 842 58 8 924 1750 609133475 609134305 0.000000e+00 1066
2 TraesCS7A01G417800 chr7A 82.868 1039 119 28 2079 3076 728722874 728723894 0.000000e+00 878
3 TraesCS7A01G417800 chr7A 93.396 212 14 0 1779 1990 609134304 609134515 6.420000e-82 315
4 TraesCS7A01G417800 chr7A 89.262 149 14 2 274 421 421785008 421785155 5.250000e-43 185
5 TraesCS7A01G417800 chr7B 89.219 1447 109 29 637 2082 567885214 567883814 0.000000e+00 1764
6 TraesCS7A01G417800 chr7B 93.293 1163 66 4 924 2082 567635310 567636464 0.000000e+00 1705
7 TraesCS7A01G417800 chr7B 90.308 227 13 4 413 639 567885473 567885256 3.890000e-74 289
8 TraesCS7A01G417800 chr7D 92.752 1159 51 5 924 2082 529680350 529681475 0.000000e+00 1644
9 TraesCS7A01G417800 chr7D 93.223 1092 63 2 991 2082 529774259 529773179 0.000000e+00 1596
10 TraesCS7A01G417800 chr7D 89.829 1052 67 20 2070 3082 618423380 618424430 0.000000e+00 1314
11 TraesCS7A01G417800 chr7D 83.418 392 50 11 258 639 529775761 529775375 1.760000e-92 350
12 TraesCS7A01G417800 chr7D 87.342 158 19 1 274 430 34373320 34373477 2.440000e-41 180
13 TraesCS7A01G417800 chr1D 89.181 1026 83 16 2079 3082 454902215 454901196 0.000000e+00 1254
14 TraesCS7A01G417800 chr1D 86.310 168 16 6 274 436 305226297 305226462 3.160000e-40 176
15 TraesCS7A01G417800 chr5D 89.008 1028 81 16 2079 3082 209498929 209499948 0.000000e+00 1243
16 TraesCS7A01G417800 chr5D 88.802 1027 86 17 2079 3082 330628921 330629941 0.000000e+00 1232
17 TraesCS7A01G417800 chr5D 88.619 1028 87 18 2079 3082 330595242 330596263 0.000000e+00 1223
18 TraesCS7A01G417800 chr5D 87.849 609 63 3 2079 2679 487575701 487575096 0.000000e+00 704
19 TraesCS7A01G417800 chr2D 88.610 1036 85 17 2072 3082 590220853 590219826 0.000000e+00 1229
20 TraesCS7A01G417800 chr2D 79.843 511 89 14 1127 1634 32151953 32151454 8.120000e-96 361
21 TraesCS7A01G417800 chr2D 86.792 159 19 1 274 432 249890045 249890201 3.160000e-40 176
22 TraesCS7A01G417800 chr6D 88.521 1028 86 19 2079 3082 445855798 445856817 0.000000e+00 1216
23 TraesCS7A01G417800 chr6D 75.786 636 128 24 1011 1634 43050640 43051261 6.460000e-77 298
24 TraesCS7A01G417800 chr6A 90.634 662 40 10 2439 3082 135769322 135768665 0.000000e+00 859
25 TraesCS7A01G417800 chr6A 88.353 601 38 6 2512 3082 518537682 518537084 0.000000e+00 693
26 TraesCS7A01G417800 chr6A 76.176 638 122 29 1011 1634 53500266 53500887 2.980000e-80 309
27 TraesCS7A01G417800 chr6A 87.117 163 20 1 269 431 570942742 570942903 1.890000e-42 183
28 TraesCS7A01G417800 chr1A 89.845 581 44 5 2271 2841 446808482 446807907 0.000000e+00 732
29 TraesCS7A01G417800 chr1A 86.145 166 20 3 274 436 382249508 382249673 3.160000e-40 176
30 TraesCS7A01G417800 chr4D 87.644 607 60 5 2079 2676 403126206 403126806 0.000000e+00 691
31 TraesCS7A01G417800 chrUn 88.920 352 31 4 2079 2423 34439220 34439570 7.900000e-116 427
32 TraesCS7A01G417800 chr6B 77.457 519 99 18 1127 1641 103703036 103702532 8.360000e-76 294
33 TraesCS7A01G417800 chr2A 88.816 152 17 0 274 425 79316007 79316158 1.460000e-43 187
34 TraesCS7A01G417800 chr1B 85.380 171 23 2 265 434 268400009 268400178 3.160000e-40 176
35 TraesCS7A01G417800 chr3D 86.164 159 20 2 264 421 482599246 482599403 1.470000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G417800 chr7A 609337908 609340989 3081 True 5692.0 5692 100.0000 1 3082 1 chr7A.!!$R1 3081
1 TraesCS7A01G417800 chr7A 728722874 728723894 1020 False 878.0 878 82.8680 2079 3076 1 chr7A.!!$F2 997
2 TraesCS7A01G417800 chr7A 609133475 609134515 1040 False 690.5 1066 91.7100 924 1990 2 chr7A.!!$F3 1066
3 TraesCS7A01G417800 chr7B 567635310 567636464 1154 False 1705.0 1705 93.2930 924 2082 1 chr7B.!!$F1 1158
4 TraesCS7A01G417800 chr7B 567883814 567885473 1659 True 1026.5 1764 89.7635 413 2082 2 chr7B.!!$R1 1669
5 TraesCS7A01G417800 chr7D 529680350 529681475 1125 False 1644.0 1644 92.7520 924 2082 1 chr7D.!!$F2 1158
6 TraesCS7A01G417800 chr7D 618423380 618424430 1050 False 1314.0 1314 89.8290 2070 3082 1 chr7D.!!$F3 1012
7 TraesCS7A01G417800 chr7D 529773179 529775761 2582 True 973.0 1596 88.3205 258 2082 2 chr7D.!!$R1 1824
8 TraesCS7A01G417800 chr1D 454901196 454902215 1019 True 1254.0 1254 89.1810 2079 3082 1 chr1D.!!$R1 1003
9 TraesCS7A01G417800 chr5D 209498929 209499948 1019 False 1243.0 1243 89.0080 2079 3082 1 chr5D.!!$F1 1003
10 TraesCS7A01G417800 chr5D 330628921 330629941 1020 False 1232.0 1232 88.8020 2079 3082 1 chr5D.!!$F3 1003
11 TraesCS7A01G417800 chr5D 330595242 330596263 1021 False 1223.0 1223 88.6190 2079 3082 1 chr5D.!!$F2 1003
12 TraesCS7A01G417800 chr5D 487575096 487575701 605 True 704.0 704 87.8490 2079 2679 1 chr5D.!!$R1 600
13 TraesCS7A01G417800 chr2D 590219826 590220853 1027 True 1229.0 1229 88.6100 2072 3082 1 chr2D.!!$R2 1010
14 TraesCS7A01G417800 chr6D 445855798 445856817 1019 False 1216.0 1216 88.5210 2079 3082 1 chr6D.!!$F2 1003
15 TraesCS7A01G417800 chr6D 43050640 43051261 621 False 298.0 298 75.7860 1011 1634 1 chr6D.!!$F1 623
16 TraesCS7A01G417800 chr6A 135768665 135769322 657 True 859.0 859 90.6340 2439 3082 1 chr6A.!!$R1 643
17 TraesCS7A01G417800 chr6A 518537084 518537682 598 True 693.0 693 88.3530 2512 3082 1 chr6A.!!$R2 570
18 TraesCS7A01G417800 chr6A 53500266 53500887 621 False 309.0 309 76.1760 1011 1634 1 chr6A.!!$F1 623
19 TraesCS7A01G417800 chr1A 446807907 446808482 575 True 732.0 732 89.8450 2271 2841 1 chr1A.!!$R1 570
20 TraesCS7A01G417800 chr4D 403126206 403126806 600 False 691.0 691 87.6440 2079 2676 1 chr4D.!!$F1 597
21 TraesCS7A01G417800 chr6B 103702532 103703036 504 True 294.0 294 77.4570 1127 1641 1 chr6B.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.107410 TTGCGGGCGTCAAATAGGAT 60.107 50.0 0.0 0.0 0.00 3.24 F
248 249 0.107831 TGCCGTTAGCTTTGTCCAGT 59.892 50.0 0.0 0.0 44.23 4.00 F
284 285 0.112412 AAATGTTGCTCCCTCCGGTT 59.888 50.0 0.0 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 2018 0.469331 TGACGGAGACCTTGGTGAGT 60.469 55.000 0.00 0.0 0.00 3.41 R
1343 2236 1.070445 GATGATGGCCAGGTCGGAG 59.930 63.158 13.05 0.0 36.56 4.63 R
2266 3193 1.457303 GACGCACACTCTTCATGTCAC 59.543 52.381 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.902224 CTGGTAAAGGAAAAACAAAACTGG 57.098 37.500 0.00 0.00 0.00 4.00
30 31 6.607004 TGGTAAAGGAAAAACAAAACTGGA 57.393 33.333 0.00 0.00 0.00 3.86
31 32 7.005709 TGGTAAAGGAAAAACAAAACTGGAA 57.994 32.000 0.00 0.00 0.00 3.53
32 33 7.450903 TGGTAAAGGAAAAACAAAACTGGAAA 58.549 30.769 0.00 0.00 0.00 3.13
33 34 7.937394 TGGTAAAGGAAAAACAAAACTGGAAAA 59.063 29.630 0.00 0.00 0.00 2.29
34 35 8.784994 GGTAAAGGAAAAACAAAACTGGAAAAA 58.215 29.630 0.00 0.00 0.00 1.94
38 39 9.508642 AAGGAAAAACAAAACTGGAAAAATACA 57.491 25.926 0.00 0.00 0.00 2.29
39 40 9.161629 AGGAAAAACAAAACTGGAAAAATACAG 57.838 29.630 0.00 0.00 40.48 2.74
47 48 5.319043 ACTGGAAAAATACAGTTCAGGGA 57.681 39.130 0.00 0.00 45.03 4.20
48 49 5.701224 ACTGGAAAAATACAGTTCAGGGAA 58.299 37.500 0.00 0.00 45.03 3.97
49 50 5.535030 ACTGGAAAAATACAGTTCAGGGAAC 59.465 40.000 0.94 0.94 45.03 3.62
63 64 3.842069 GGAACCTTCCCAAACCTGT 57.158 52.632 0.00 0.00 41.62 4.00
64 65 2.082140 GGAACCTTCCCAAACCTGTT 57.918 50.000 0.00 0.00 41.62 3.16
65 66 1.686587 GGAACCTTCCCAAACCTGTTG 59.313 52.381 0.00 0.00 41.62 3.33
66 67 1.068588 GAACCTTCCCAAACCTGTTGC 59.931 52.381 0.00 0.00 0.00 4.17
67 68 0.261696 ACCTTCCCAAACCTGTTGCT 59.738 50.000 0.00 0.00 0.00 3.91
68 69 0.961753 CCTTCCCAAACCTGTTGCTC 59.038 55.000 0.00 0.00 0.00 4.26
69 70 0.593128 CTTCCCAAACCTGTTGCTCG 59.407 55.000 0.00 0.00 0.00 5.03
70 71 0.821711 TTCCCAAACCTGTTGCTCGG 60.822 55.000 0.00 0.00 0.00 4.63
71 72 1.528309 CCCAAACCTGTTGCTCGGT 60.528 57.895 0.00 0.00 34.27 4.69
72 73 1.515521 CCCAAACCTGTTGCTCGGTC 61.516 60.000 0.00 0.00 31.87 4.79
73 74 0.817634 CCAAACCTGTTGCTCGGTCA 60.818 55.000 0.00 0.00 31.87 4.02
74 75 1.021202 CAAACCTGTTGCTCGGTCAA 58.979 50.000 0.00 0.00 31.87 3.18
75 76 1.403679 CAAACCTGTTGCTCGGTCAAA 59.596 47.619 0.00 0.00 31.87 2.69
76 77 1.021968 AACCTGTTGCTCGGTCAAAC 58.978 50.000 0.00 0.00 31.87 2.93
77 78 0.180406 ACCTGTTGCTCGGTCAAACT 59.820 50.000 0.00 0.00 0.00 2.66
78 79 0.588252 CCTGTTGCTCGGTCAAACTG 59.412 55.000 0.00 0.00 0.00 3.16
79 80 0.588252 CTGTTGCTCGGTCAAACTGG 59.412 55.000 0.00 0.00 0.00 4.00
80 81 0.817634 TGTTGCTCGGTCAAACTGGG 60.818 55.000 0.00 0.00 0.00 4.45
82 83 3.056328 GCTCGGTCAAACTGGGCC 61.056 66.667 0.00 0.00 45.15 5.80
83 84 2.429930 CTCGGTCAAACTGGGCCA 59.570 61.111 5.85 5.85 0.00 5.36
84 85 1.672356 CTCGGTCAAACTGGGCCAG 60.672 63.158 31.62 31.62 37.52 4.85
85 86 2.672996 CGGTCAAACTGGGCCAGG 60.673 66.667 35.34 19.20 35.51 4.45
86 87 2.991540 GGTCAAACTGGGCCAGGC 60.992 66.667 35.34 19.21 35.51 4.85
97 98 4.285851 GCCAGGCCATATCGTAGC 57.714 61.111 5.01 0.00 0.00 3.58
98 99 1.738099 GCCAGGCCATATCGTAGCG 60.738 63.158 5.01 0.00 0.00 4.26
99 100 1.738099 CCAGGCCATATCGTAGCGC 60.738 63.158 5.01 0.00 0.00 5.92
100 101 1.290324 CAGGCCATATCGTAGCGCT 59.710 57.895 17.26 17.26 0.00 5.92
101 102 0.734253 CAGGCCATATCGTAGCGCTC 60.734 60.000 16.34 4.78 0.00 5.03
102 103 1.801913 GGCCATATCGTAGCGCTCG 60.802 63.158 16.34 18.06 0.00 5.03
103 104 2.437343 GCCATATCGTAGCGCTCGC 61.437 63.158 16.34 7.63 42.33 5.03
114 115 2.807045 CGCTCGCTCGCTTCAGTT 60.807 61.111 0.00 0.00 0.00 3.16
115 116 2.375766 CGCTCGCTCGCTTCAGTTT 61.376 57.895 0.00 0.00 0.00 2.66
116 117 1.131420 GCTCGCTCGCTTCAGTTTG 59.869 57.895 0.00 0.00 0.00 2.93
117 118 1.284982 GCTCGCTCGCTTCAGTTTGA 61.285 55.000 0.00 0.00 0.00 2.69
118 119 1.354040 CTCGCTCGCTTCAGTTTGAT 58.646 50.000 0.00 0.00 0.00 2.57
119 120 1.060266 CTCGCTCGCTTCAGTTTGATG 59.940 52.381 0.00 0.00 0.00 3.07
120 121 0.519999 CGCTCGCTTCAGTTTGATGC 60.520 55.000 6.82 6.82 42.15 3.91
121 122 0.801251 GCTCGCTTCAGTTTGATGCT 59.199 50.000 12.97 0.00 43.03 3.79
122 123 1.198637 GCTCGCTTCAGTTTGATGCTT 59.801 47.619 12.97 0.00 43.03 3.91
123 124 2.847901 CTCGCTTCAGTTTGATGCTTG 58.152 47.619 12.97 4.45 43.03 4.01
124 125 1.069022 TCGCTTCAGTTTGATGCTTGC 60.069 47.619 12.97 0.00 43.03 4.01
125 126 1.334054 GCTTCAGTTTGATGCTTGCG 58.666 50.000 9.02 0.00 42.26 4.85
126 127 1.973138 CTTCAGTTTGATGCTTGCGG 58.027 50.000 0.00 0.00 0.00 5.69
127 128 0.597568 TTCAGTTTGATGCTTGCGGG 59.402 50.000 0.00 0.00 0.00 6.13
128 129 1.444895 CAGTTTGATGCTTGCGGGC 60.445 57.895 0.00 0.00 0.00 6.13
129 130 2.504681 GTTTGATGCTTGCGGGCG 60.505 61.111 0.00 0.00 34.52 6.13
130 131 2.983030 TTTGATGCTTGCGGGCGT 60.983 55.556 0.00 0.00 34.52 5.68
131 132 2.976840 TTTGATGCTTGCGGGCGTC 61.977 57.895 13.71 13.71 45.41 5.19
133 134 3.430862 GATGCTTGCGGGCGTCAA 61.431 61.111 15.13 0.00 44.79 3.18
134 135 2.976840 GATGCTTGCGGGCGTCAAA 61.977 57.895 15.13 0.00 44.79 2.69
135 136 2.270297 GATGCTTGCGGGCGTCAAAT 62.270 55.000 15.13 0.00 44.79 2.32
136 137 1.029408 ATGCTTGCGGGCGTCAAATA 61.029 50.000 0.00 0.00 34.52 1.40
137 138 1.062525 GCTTGCGGGCGTCAAATAG 59.937 57.895 0.00 0.00 0.00 1.73
138 139 1.721487 CTTGCGGGCGTCAAATAGG 59.279 57.895 0.00 0.00 0.00 2.57
139 140 0.742990 CTTGCGGGCGTCAAATAGGA 60.743 55.000 0.00 0.00 0.00 2.94
140 141 0.107410 TTGCGGGCGTCAAATAGGAT 60.107 50.000 0.00 0.00 0.00 3.24
141 142 0.531974 TGCGGGCGTCAAATAGGATC 60.532 55.000 0.00 0.00 0.00 3.36
142 143 1.228657 GCGGGCGTCAAATAGGATCC 61.229 60.000 2.48 2.48 0.00 3.36
143 144 0.944311 CGGGCGTCAAATAGGATCCG 60.944 60.000 5.98 0.00 0.00 4.18
144 145 1.228657 GGGCGTCAAATAGGATCCGC 61.229 60.000 5.98 3.00 40.33 5.54
145 146 2.235546 GCGTCAAATAGGATCCGCC 58.764 57.895 5.98 0.00 35.45 6.13
160 161 3.980583 CGCCTATACACGGATTGGT 57.019 52.632 0.00 0.00 0.00 3.67
161 162 2.234300 CGCCTATACACGGATTGGTT 57.766 50.000 0.00 0.00 0.00 3.67
162 163 1.864711 CGCCTATACACGGATTGGTTG 59.135 52.381 0.00 0.00 0.00 3.77
163 164 1.602377 GCCTATACACGGATTGGTTGC 59.398 52.381 0.00 0.00 0.00 4.17
164 165 2.745152 GCCTATACACGGATTGGTTGCT 60.745 50.000 0.00 0.00 0.00 3.91
165 166 3.131396 CCTATACACGGATTGGTTGCTC 58.869 50.000 0.00 0.00 0.00 4.26
166 167 3.181465 CCTATACACGGATTGGTTGCTCT 60.181 47.826 0.00 0.00 0.00 4.09
167 168 2.851263 TACACGGATTGGTTGCTCTT 57.149 45.000 0.00 0.00 0.00 2.85
168 169 1.523758 ACACGGATTGGTTGCTCTTC 58.476 50.000 0.00 0.00 0.00 2.87
169 170 1.202758 ACACGGATTGGTTGCTCTTCA 60.203 47.619 0.00 0.00 0.00 3.02
170 171 1.466167 CACGGATTGGTTGCTCTTCAG 59.534 52.381 0.00 0.00 0.00 3.02
171 172 1.347707 ACGGATTGGTTGCTCTTCAGA 59.652 47.619 0.00 0.00 0.00 3.27
172 173 2.224523 ACGGATTGGTTGCTCTTCAGAA 60.225 45.455 0.00 0.00 0.00 3.02
173 174 2.813754 CGGATTGGTTGCTCTTCAGAAA 59.186 45.455 0.00 0.00 0.00 2.52
174 175 3.253188 CGGATTGGTTGCTCTTCAGAAAA 59.747 43.478 0.00 0.00 0.00 2.29
175 176 4.614535 CGGATTGGTTGCTCTTCAGAAAAG 60.615 45.833 0.00 0.00 0.00 2.27
176 177 4.520492 GGATTGGTTGCTCTTCAGAAAAGA 59.480 41.667 0.00 0.00 0.00 2.52
177 178 5.010012 GGATTGGTTGCTCTTCAGAAAAGAA 59.990 40.000 0.00 0.00 0.00 2.52
178 179 5.913137 TTGGTTGCTCTTCAGAAAAGAAA 57.087 34.783 0.00 0.00 0.00 2.52
179 180 5.913137 TGGTTGCTCTTCAGAAAAGAAAA 57.087 34.783 0.00 0.00 0.00 2.29
180 181 6.279513 TGGTTGCTCTTCAGAAAAGAAAAA 57.720 33.333 0.00 0.00 0.00 1.94
181 182 6.877236 TGGTTGCTCTTCAGAAAAGAAAAAT 58.123 32.000 0.00 0.00 0.00 1.82
182 183 6.757947 TGGTTGCTCTTCAGAAAAGAAAAATG 59.242 34.615 0.00 0.00 0.00 2.32
183 184 6.201615 GGTTGCTCTTCAGAAAAGAAAAATGG 59.798 38.462 0.00 0.00 0.00 3.16
184 185 6.469782 TGCTCTTCAGAAAAGAAAAATGGT 57.530 33.333 0.00 0.00 0.00 3.55
185 186 6.507023 TGCTCTTCAGAAAAGAAAAATGGTC 58.493 36.000 0.00 0.00 0.00 4.02
186 187 6.322201 TGCTCTTCAGAAAAGAAAAATGGTCT 59.678 34.615 0.00 0.00 0.00 3.85
187 188 6.640092 GCTCTTCAGAAAAGAAAAATGGTCTG 59.360 38.462 0.00 0.00 35.01 3.51
188 189 7.469181 GCTCTTCAGAAAAGAAAAATGGTCTGA 60.469 37.037 0.00 0.00 39.66 3.27
189 190 8.292444 TCTTCAGAAAAGAAAAATGGTCTGAA 57.708 30.769 12.03 12.03 45.22 3.02
190 191 8.917088 TCTTCAGAAAAGAAAAATGGTCTGAAT 58.083 29.630 12.77 0.00 45.84 2.57
191 192 8.876275 TTCAGAAAAGAAAAATGGTCTGAATG 57.124 30.769 9.27 0.00 43.55 2.67
192 193 6.925165 TCAGAAAAGAAAAATGGTCTGAATGC 59.075 34.615 0.00 0.00 38.75 3.56
193 194 6.146673 CAGAAAAGAAAAATGGTCTGAATGCC 59.853 38.462 0.00 0.00 35.57 4.40
194 195 4.541973 AAGAAAAATGGTCTGAATGCCC 57.458 40.909 0.00 0.00 0.00 5.36
195 196 3.782992 AGAAAAATGGTCTGAATGCCCT 58.217 40.909 0.00 0.00 0.00 5.19
196 197 4.162651 AGAAAAATGGTCTGAATGCCCTT 58.837 39.130 0.00 0.00 0.00 3.95
197 198 3.967332 AAAATGGTCTGAATGCCCTTG 57.033 42.857 0.00 0.00 0.00 3.61
198 199 2.610438 AATGGTCTGAATGCCCTTGT 57.390 45.000 0.00 0.00 0.00 3.16
199 200 2.610438 ATGGTCTGAATGCCCTTGTT 57.390 45.000 0.00 0.00 0.00 2.83
200 201 2.380064 TGGTCTGAATGCCCTTGTTT 57.620 45.000 0.00 0.00 0.00 2.83
201 202 2.676748 TGGTCTGAATGCCCTTGTTTT 58.323 42.857 0.00 0.00 0.00 2.43
202 203 3.037549 TGGTCTGAATGCCCTTGTTTTT 58.962 40.909 0.00 0.00 0.00 1.94
226 227 7.429636 TTCTTTTTGAGAAACCCGTAGTATG 57.570 36.000 0.00 0.00 41.34 2.39
227 228 6.761312 TCTTTTTGAGAAACCCGTAGTATGA 58.239 36.000 0.00 0.00 0.00 2.15
228 229 7.218614 TCTTTTTGAGAAACCCGTAGTATGAA 58.781 34.615 0.00 0.00 0.00 2.57
229 230 7.881232 TCTTTTTGAGAAACCCGTAGTATGAAT 59.119 33.333 0.00 0.00 0.00 2.57
230 231 6.978343 TTTGAGAAACCCGTAGTATGAATG 57.022 37.500 0.00 0.00 0.00 2.67
231 232 4.439057 TGAGAAACCCGTAGTATGAATGC 58.561 43.478 0.00 0.00 0.00 3.56
232 233 3.805207 AGAAACCCGTAGTATGAATGCC 58.195 45.455 0.00 0.00 0.00 4.40
233 234 2.234300 AACCCGTAGTATGAATGCCG 57.766 50.000 0.00 0.00 0.00 5.69
234 235 1.117150 ACCCGTAGTATGAATGCCGT 58.883 50.000 0.00 0.00 0.00 5.68
235 236 1.483415 ACCCGTAGTATGAATGCCGTT 59.517 47.619 0.00 0.00 0.00 4.44
236 237 2.694628 ACCCGTAGTATGAATGCCGTTA 59.305 45.455 0.00 0.00 0.00 3.18
237 238 3.243636 ACCCGTAGTATGAATGCCGTTAG 60.244 47.826 0.00 0.00 0.00 2.34
238 239 2.729882 CCGTAGTATGAATGCCGTTAGC 59.270 50.000 0.00 0.00 44.14 3.09
239 240 3.552273 CCGTAGTATGAATGCCGTTAGCT 60.552 47.826 0.00 0.00 44.23 3.32
240 241 4.049186 CGTAGTATGAATGCCGTTAGCTT 58.951 43.478 0.00 0.00 44.23 3.74
241 242 4.506654 CGTAGTATGAATGCCGTTAGCTTT 59.493 41.667 0.00 0.00 44.23 3.51
242 243 4.882671 AGTATGAATGCCGTTAGCTTTG 57.117 40.909 0.00 0.00 44.23 2.77
243 244 4.261801 AGTATGAATGCCGTTAGCTTTGT 58.738 39.130 0.00 0.00 44.23 2.83
244 245 3.764885 ATGAATGCCGTTAGCTTTGTC 57.235 42.857 0.00 0.00 44.23 3.18
245 246 1.810151 TGAATGCCGTTAGCTTTGTCC 59.190 47.619 0.00 0.00 44.23 4.02
246 247 1.810151 GAATGCCGTTAGCTTTGTCCA 59.190 47.619 0.00 0.00 44.23 4.02
247 248 1.453155 ATGCCGTTAGCTTTGTCCAG 58.547 50.000 0.00 0.00 44.23 3.86
248 249 0.107831 TGCCGTTAGCTTTGTCCAGT 59.892 50.000 0.00 0.00 44.23 4.00
249 250 1.235724 GCCGTTAGCTTTGTCCAGTT 58.764 50.000 0.00 0.00 38.99 3.16
250 251 1.069227 GCCGTTAGCTTTGTCCAGTTG 60.069 52.381 0.00 0.00 38.99 3.16
251 252 2.218603 CCGTTAGCTTTGTCCAGTTGT 58.781 47.619 0.00 0.00 0.00 3.32
252 253 2.616842 CCGTTAGCTTTGTCCAGTTGTT 59.383 45.455 0.00 0.00 0.00 2.83
253 254 3.810941 CCGTTAGCTTTGTCCAGTTGTTA 59.189 43.478 0.00 0.00 0.00 2.41
254 255 4.273969 CCGTTAGCTTTGTCCAGTTGTTAA 59.726 41.667 0.00 0.00 0.00 2.01
255 256 5.440685 CGTTAGCTTTGTCCAGTTGTTAAG 58.559 41.667 0.00 0.00 0.00 1.85
256 257 5.560183 CGTTAGCTTTGTCCAGTTGTTAAGG 60.560 44.000 0.00 0.00 0.00 2.69
267 268 7.396623 TGTCCAGTTGTTAAGGTTTCCTAAAAA 59.603 33.333 0.00 0.00 31.13 1.94
272 273 9.594478 AGTTGTTAAGGTTTCCTAAAAATGTTG 57.406 29.630 0.00 0.00 31.13 3.33
280 281 3.697166 TCCTAAAAATGTTGCTCCCTCC 58.303 45.455 0.00 0.00 0.00 4.30
282 283 1.256812 AAAAATGTTGCTCCCTCCGG 58.743 50.000 0.00 0.00 0.00 5.14
284 285 0.112412 AAATGTTGCTCCCTCCGGTT 59.888 50.000 0.00 0.00 0.00 4.44
301 302 7.172703 CCCTCCGGTTACAAATATAAGATGTTC 59.827 40.741 0.00 0.00 0.00 3.18
355 381 9.561069 AGAGATGTTTTAGTGTGTTTATTCACT 57.439 29.630 0.00 0.00 45.21 3.41
356 382 9.813080 GAGATGTTTTAGTGTGTTTATTCACTC 57.187 33.333 1.08 0.00 42.77 3.51
357 383 9.337396 AGATGTTTTAGTGTGTTTATTCACTCA 57.663 29.630 1.08 0.00 42.77 3.41
364 390 7.807977 AGTGTGTTTATTCACTCATTTCAGT 57.192 32.000 0.00 0.00 40.28 3.41
365 391 7.865707 AGTGTGTTTATTCACTCATTTCAGTC 58.134 34.615 0.00 0.00 40.28 3.51
366 392 7.041098 AGTGTGTTTATTCACTCATTTCAGTCC 60.041 37.037 0.00 0.00 40.28 3.85
367 393 6.073276 TGTGTTTATTCACTCATTTCAGTCCG 60.073 38.462 0.00 0.00 38.90 4.79
368 394 5.995282 TGTTTATTCACTCATTTCAGTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
369 395 7.117236 GTGTTTATTCACTCATTTCAGTCCGTA 59.883 37.037 0.00 0.00 35.68 4.02
370 396 7.822334 TGTTTATTCACTCATTTCAGTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
371 397 9.309516 GTTTATTCACTCATTTCAGTCCGTATA 57.690 33.333 0.00 0.00 0.00 1.47
384 410 7.096884 TCAGTCCGTATATAGTCCATATTGC 57.903 40.000 0.00 0.00 31.96 3.56
392 418 9.129209 CGTATATAGTCCATATTGCAATATCCG 57.871 37.037 25.71 18.92 31.96 4.18
414 440 6.254804 TCCGACACATCTTATATTTGTGAACG 59.745 38.462 13.90 15.48 42.59 3.95
415 441 6.410845 CGACACATCTTATATTTGTGAACGG 58.589 40.000 13.90 1.58 42.59 4.44
416 442 6.035650 CGACACATCTTATATTTGTGAACGGT 59.964 38.462 13.90 0.00 42.59 4.83
421 447 5.806818 TCTTATATTTGTGAACGGTGGGAA 58.193 37.500 0.00 0.00 0.00 3.97
427 453 3.495434 TGTGAACGGTGGGAATACTTT 57.505 42.857 0.00 0.00 0.00 2.66
430 456 5.374921 TGTGAACGGTGGGAATACTTTTTA 58.625 37.500 0.00 0.00 0.00 1.52
549 577 2.415512 GCAAAAGTCGACCCACTATCAC 59.584 50.000 13.01 0.00 0.00 3.06
623 651 6.769822 TGGATAAGCAGATCTCCAATTTTCTC 59.230 38.462 0.00 0.00 34.91 2.87
633 661 8.991275 AGATCTCCAATTTTCTCATACTCTCTT 58.009 33.333 0.00 0.00 0.00 2.85
640 712 8.449397 CAATTTTCTCATACTCTCTTTGTCCAG 58.551 37.037 0.00 0.00 0.00 3.86
645 717 4.160439 TCATACTCTCTTTGTCCAGCGAAT 59.840 41.667 0.00 0.00 0.00 3.34
650 722 2.807967 CTCTTTGTCCAGCGAATGAACA 59.192 45.455 0.00 0.00 0.00 3.18
664 736 1.384525 TGAACAGTGGACCAAAACCG 58.615 50.000 0.00 0.00 0.00 4.44
818 1664 9.268268 GAGGTTATGATCTATAGAGAGATACGG 57.732 40.741 8.70 0.00 36.27 4.02
819 1665 8.994500 AGGTTATGATCTATAGAGAGATACGGA 58.006 37.037 8.70 0.00 36.27 4.69
820 1666 9.268268 GGTTATGATCTATAGAGAGATACGGAG 57.732 40.741 8.70 0.00 36.27 4.63
821 1667 9.826574 GTTATGATCTATAGAGAGATACGGAGT 57.173 37.037 8.70 0.00 39.13 3.85
824 1670 8.014070 TGATCTATAGAGAGATACGGAGTAGG 57.986 42.308 8.70 0.00 40.30 3.18
825 1671 7.840210 TGATCTATAGAGAGATACGGAGTAGGA 59.160 40.741 8.70 0.00 40.30 2.94
826 1672 8.612486 ATCTATAGAGAGATACGGAGTAGGAA 57.388 38.462 8.70 0.00 40.30 3.36
827 1673 8.701895 ATCTATAGAGAGATACGGAGTAGGAAG 58.298 40.741 8.70 0.00 40.30 3.46
894 1761 2.398498 CTCAGCTACGTACCATGCATC 58.602 52.381 0.00 0.00 0.00 3.91
895 1762 1.068588 TCAGCTACGTACCATGCATCC 59.931 52.381 0.00 0.00 0.00 3.51
896 1763 1.119684 AGCTACGTACCATGCATCCA 58.880 50.000 0.00 0.00 0.00 3.41
897 1764 1.484653 AGCTACGTACCATGCATCCAA 59.515 47.619 0.00 0.00 0.00 3.53
898 1765 2.093181 AGCTACGTACCATGCATCCAAA 60.093 45.455 0.00 0.00 0.00 3.28
899 1766 2.287915 GCTACGTACCATGCATCCAAAG 59.712 50.000 0.00 0.00 0.00 2.77
900 1767 2.489938 ACGTACCATGCATCCAAAGT 57.510 45.000 0.00 0.00 0.00 2.66
901 1768 2.790433 ACGTACCATGCATCCAAAGTT 58.210 42.857 0.00 0.00 0.00 2.66
902 1769 2.747446 ACGTACCATGCATCCAAAGTTC 59.253 45.455 0.00 0.00 0.00 3.01
903 1770 2.746904 CGTACCATGCATCCAAAGTTCA 59.253 45.455 0.00 0.00 0.00 3.18
904 1771 3.190327 CGTACCATGCATCCAAAGTTCAA 59.810 43.478 0.00 0.00 0.00 2.69
905 1772 4.320861 CGTACCATGCATCCAAAGTTCAAA 60.321 41.667 0.00 0.00 0.00 2.69
906 1773 4.686191 ACCATGCATCCAAAGTTCAAAA 57.314 36.364 0.00 0.00 0.00 2.44
907 1774 5.033589 ACCATGCATCCAAAGTTCAAAAA 57.966 34.783 0.00 0.00 0.00 1.94
908 1775 4.815846 ACCATGCATCCAAAGTTCAAAAAC 59.184 37.500 0.00 0.00 35.50 2.43
909 1776 4.213906 CCATGCATCCAAAGTTCAAAAACC 59.786 41.667 0.00 0.00 35.92 3.27
910 1777 4.478206 TGCATCCAAAGTTCAAAAACCA 57.522 36.364 0.00 0.00 35.92 3.67
911 1778 4.836825 TGCATCCAAAGTTCAAAAACCAA 58.163 34.783 0.00 0.00 35.92 3.67
912 1779 4.633565 TGCATCCAAAGTTCAAAAACCAAC 59.366 37.500 0.00 0.00 35.92 3.77
913 1780 4.875536 GCATCCAAAGTTCAAAAACCAACT 59.124 37.500 0.00 0.00 35.92 3.16
914 1781 5.220643 GCATCCAAAGTTCAAAAACCAACTG 60.221 40.000 0.00 0.00 35.92 3.16
915 1782 5.730296 TCCAAAGTTCAAAAACCAACTGA 57.270 34.783 0.00 0.00 35.92 3.41
916 1783 5.719173 TCCAAAGTTCAAAAACCAACTGAG 58.281 37.500 0.00 0.00 35.92 3.35
917 1784 5.478679 TCCAAAGTTCAAAAACCAACTGAGA 59.521 36.000 0.00 0.00 35.92 3.27
918 1785 6.015010 TCCAAAGTTCAAAAACCAACTGAGAA 60.015 34.615 0.00 0.00 35.92 2.87
919 1786 6.648725 CCAAAGTTCAAAAACCAACTGAGAAA 59.351 34.615 0.00 0.00 35.92 2.52
920 1787 7.148590 CCAAAGTTCAAAAACCAACTGAGAAAG 60.149 37.037 0.00 0.00 35.92 2.62
921 1788 5.410924 AGTTCAAAAACCAACTGAGAAAGC 58.589 37.500 0.00 0.00 35.92 3.51
922 1789 5.047377 AGTTCAAAAACCAACTGAGAAAGCA 60.047 36.000 0.00 0.00 35.92 3.91
981 1859 3.536956 ATATCAACACAACCCGATCGT 57.463 42.857 15.09 0.00 0.00 3.73
1105 1998 3.998672 GCGACGGGGAACTGACCA 61.999 66.667 0.00 0.00 41.09 4.02
1341 2234 3.465403 CTCACCAGGGGCTCCGAG 61.465 72.222 0.00 0.00 38.33 4.63
1378 2271 4.135153 CACGGTGCCGAGGGAGAG 62.135 72.222 18.16 0.00 42.83 3.20
1610 2506 3.710722 CTCCTGGCCGAGCACCTT 61.711 66.667 0.00 0.00 0.00 3.50
1730 2626 2.733956 CTGAGCTACCTCCAGAAGACT 58.266 52.381 0.00 0.00 37.29 3.24
2068 2994 0.324738 CTCTGGGGCTACTGTCAGGA 60.325 60.000 4.53 0.00 0.00 3.86
2125 3051 4.253685 CCATCGATGTTCACTTTGGTACT 58.746 43.478 23.27 0.00 0.00 2.73
2171 3097 7.670605 ACTGGTTCTATAACTTGGCAGTATA 57.329 36.000 0.00 0.00 34.58 1.47
2218 3144 8.961634 ACGTCTAGATATGTATGTATTGCTGAT 58.038 33.333 0.00 0.00 0.00 2.90
2266 3193 2.032549 CACTTGCAGTGTCGGAAAAGAG 60.033 50.000 7.80 0.00 41.19 2.85
2292 3219 3.934457 TGAAGAGTGTGCGTCTCAATA 57.066 42.857 5.64 0.00 34.73 1.90
2327 3263 7.007723 TCCCACCTACAACTGAAATAAACAAT 58.992 34.615 0.00 0.00 0.00 2.71
2381 3318 1.071299 TGCGCCACAGAGAACATGT 59.929 52.632 4.18 0.00 0.00 3.21
2420 3358 5.464057 CCATGTACGTTTACTGTCTTTCACA 59.536 40.000 0.00 0.00 0.00 3.58
2487 3425 1.354031 TGGAGTTAAATGGGCTGCAGA 59.646 47.619 20.43 0.00 0.00 4.26
2896 3899 9.767684 TTTCTTACTAATACAACAATTCGCATG 57.232 29.630 0.00 0.00 0.00 4.06
2948 3952 2.705658 ACTCACATCTTGAAGGGTCACA 59.294 45.455 0.00 0.00 32.21 3.58
2958 3963 3.761897 TGAAGGGTCACATACAAAAGGG 58.238 45.455 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.940137 AGTTTTGTTTTTCCTTTACCAGGTTTT 59.060 29.630 0.00 0.00 44.37 2.43
2 3 7.389330 CAGTTTTGTTTTTCCTTTACCAGGTTT 59.611 33.333 0.00 0.00 44.37 3.27
3 4 6.876789 CAGTTTTGTTTTTCCTTTACCAGGTT 59.123 34.615 0.00 0.00 44.37 3.50
4 5 6.403049 CAGTTTTGTTTTTCCTTTACCAGGT 58.597 36.000 0.00 0.00 44.37 4.00
5 6 5.815222 CCAGTTTTGTTTTTCCTTTACCAGG 59.185 40.000 0.00 0.00 45.64 4.45
6 7 6.635755 TCCAGTTTTGTTTTTCCTTTACCAG 58.364 36.000 0.00 0.00 0.00 4.00
7 8 6.607004 TCCAGTTTTGTTTTTCCTTTACCA 57.393 33.333 0.00 0.00 0.00 3.25
8 9 7.908827 TTTCCAGTTTTGTTTTTCCTTTACC 57.091 32.000 0.00 0.00 0.00 2.85
12 13 9.508642 TGTATTTTTCCAGTTTTGTTTTTCCTT 57.491 25.926 0.00 0.00 0.00 3.36
13 14 9.161629 CTGTATTTTTCCAGTTTTGTTTTTCCT 57.838 29.630 0.00 0.00 0.00 3.36
14 15 8.941977 ACTGTATTTTTCCAGTTTTGTTTTTCC 58.058 29.630 0.00 0.00 38.76 3.13
25 26 5.319043 TCCCTGAACTGTATTTTTCCAGT 57.681 39.130 0.00 0.00 43.53 4.00
26 27 5.048013 GGTTCCCTGAACTGTATTTTTCCAG 60.048 44.000 6.89 0.00 41.70 3.86
27 28 4.830600 GGTTCCCTGAACTGTATTTTTCCA 59.169 41.667 6.89 0.00 41.70 3.53
28 29 5.077564 AGGTTCCCTGAACTGTATTTTTCC 58.922 41.667 6.89 0.00 41.70 3.13
29 30 6.294564 GGAAGGTTCCCTGAACTGTATTTTTC 60.295 42.308 6.89 0.00 41.70 2.29
30 31 5.538813 GGAAGGTTCCCTGAACTGTATTTTT 59.461 40.000 6.89 0.00 41.70 1.94
31 32 5.077564 GGAAGGTTCCCTGAACTGTATTTT 58.922 41.667 6.89 0.00 41.70 1.82
32 33 4.663334 GGAAGGTTCCCTGAACTGTATTT 58.337 43.478 6.89 0.00 41.70 1.40
33 34 4.302559 GGAAGGTTCCCTGAACTGTATT 57.697 45.455 6.89 0.00 41.70 1.89
45 46 1.686587 CAACAGGTTTGGGAAGGTTCC 59.313 52.381 0.00 0.00 46.82 3.62
46 47 1.068588 GCAACAGGTTTGGGAAGGTTC 59.931 52.381 0.00 0.00 0.00 3.62
47 48 1.119684 GCAACAGGTTTGGGAAGGTT 58.880 50.000 0.00 0.00 0.00 3.50
48 49 0.261696 AGCAACAGGTTTGGGAAGGT 59.738 50.000 0.00 0.00 0.00 3.50
49 50 0.961753 GAGCAACAGGTTTGGGAAGG 59.038 55.000 0.00 0.00 0.00 3.46
50 51 0.593128 CGAGCAACAGGTTTGGGAAG 59.407 55.000 0.00 0.00 0.00 3.46
51 52 0.821711 CCGAGCAACAGGTTTGGGAA 60.822 55.000 0.00 0.00 0.00 3.97
52 53 1.228124 CCGAGCAACAGGTTTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
53 54 1.515521 GACCGAGCAACAGGTTTGGG 61.516 60.000 0.00 0.00 41.51 4.12
54 55 0.817634 TGACCGAGCAACAGGTTTGG 60.818 55.000 0.00 0.00 41.51 3.28
55 56 1.021202 TTGACCGAGCAACAGGTTTG 58.979 50.000 0.00 0.00 41.51 2.93
56 57 1.404035 GTTTGACCGAGCAACAGGTTT 59.596 47.619 0.00 0.00 41.51 3.27
57 58 1.021968 GTTTGACCGAGCAACAGGTT 58.978 50.000 0.00 0.00 41.51 3.50
58 59 0.180406 AGTTTGACCGAGCAACAGGT 59.820 50.000 0.00 0.00 44.64 4.00
59 60 0.588252 CAGTTTGACCGAGCAACAGG 59.412 55.000 0.00 0.00 0.00 4.00
60 61 0.588252 CCAGTTTGACCGAGCAACAG 59.412 55.000 0.00 0.00 0.00 3.16
61 62 0.817634 CCCAGTTTGACCGAGCAACA 60.818 55.000 0.00 0.00 0.00 3.33
62 63 1.949257 CCCAGTTTGACCGAGCAAC 59.051 57.895 0.00 0.00 0.00 4.17
63 64 1.896660 GCCCAGTTTGACCGAGCAA 60.897 57.895 0.00 0.00 0.00 3.91
64 65 2.281484 GCCCAGTTTGACCGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
65 66 3.056328 GGCCCAGTTTGACCGAGC 61.056 66.667 0.00 0.00 0.00 5.03
66 67 1.672356 CTGGCCCAGTTTGACCGAG 60.672 63.158 1.39 0.00 0.00 4.63
67 68 2.429930 CTGGCCCAGTTTGACCGA 59.570 61.111 1.39 0.00 0.00 4.69
68 69 2.672996 CCTGGCCCAGTTTGACCG 60.673 66.667 10.47 0.00 0.00 4.79
69 70 2.991540 GCCTGGCCCAGTTTGACC 60.992 66.667 10.47 0.00 0.00 4.02
70 71 2.991540 GGCCTGGCCCAGTTTGAC 60.992 66.667 27.77 0.00 44.06 3.18
80 81 1.738099 CGCTACGATATGGCCTGGC 60.738 63.158 11.05 11.05 0.00 4.85
81 82 1.738099 GCGCTACGATATGGCCTGG 60.738 63.158 3.32 0.00 0.00 4.45
82 83 0.734253 GAGCGCTACGATATGGCCTG 60.734 60.000 11.50 0.00 0.00 4.85
83 84 1.587054 GAGCGCTACGATATGGCCT 59.413 57.895 11.50 0.00 0.00 5.19
84 85 1.801913 CGAGCGCTACGATATGGCC 60.802 63.158 11.50 0.00 0.00 5.36
85 86 2.437343 GCGAGCGCTACGATATGGC 61.437 63.158 26.02 7.51 38.26 4.40
86 87 3.755404 GCGAGCGCTACGATATGG 58.245 61.111 26.02 1.25 38.26 2.74
97 98 2.375766 AAACTGAAGCGAGCGAGCG 61.376 57.895 0.00 0.00 43.00 5.03
98 99 1.131420 CAAACTGAAGCGAGCGAGC 59.869 57.895 0.00 0.00 37.41 5.03
99 100 1.060266 CATCAAACTGAAGCGAGCGAG 59.940 52.381 0.00 0.00 0.00 5.03
100 101 1.070821 CATCAAACTGAAGCGAGCGA 58.929 50.000 0.00 0.00 0.00 4.93
101 102 0.519999 GCATCAAACTGAAGCGAGCG 60.520 55.000 0.00 0.00 31.25 5.03
102 103 0.801251 AGCATCAAACTGAAGCGAGC 59.199 50.000 0.00 0.00 44.84 5.03
103 104 2.847901 CAAGCATCAAACTGAAGCGAG 58.152 47.619 0.00 0.00 44.84 5.03
104 105 1.069022 GCAAGCATCAAACTGAAGCGA 60.069 47.619 0.00 0.00 44.84 4.93
105 106 1.334054 GCAAGCATCAAACTGAAGCG 58.666 50.000 0.00 0.00 44.84 4.68
106 107 1.334054 CGCAAGCATCAAACTGAAGC 58.666 50.000 0.00 0.00 40.99 3.86
107 108 1.401931 CCCGCAAGCATCAAACTGAAG 60.402 52.381 0.00 0.00 0.00 3.02
108 109 0.597568 CCCGCAAGCATCAAACTGAA 59.402 50.000 0.00 0.00 0.00 3.02
109 110 1.865788 GCCCGCAAGCATCAAACTGA 61.866 55.000 0.00 0.00 0.00 3.41
110 111 1.444895 GCCCGCAAGCATCAAACTG 60.445 57.895 0.00 0.00 0.00 3.16
111 112 2.964978 GCCCGCAAGCATCAAACT 59.035 55.556 0.00 0.00 0.00 2.66
112 113 2.504681 CGCCCGCAAGCATCAAAC 60.505 61.111 0.00 0.00 0.00 2.93
113 114 2.976840 GACGCCCGCAAGCATCAAA 61.977 57.895 0.00 0.00 0.00 2.69
114 115 3.430862 GACGCCCGCAAGCATCAA 61.431 61.111 0.00 0.00 0.00 2.57
115 116 4.695993 TGACGCCCGCAAGCATCA 62.696 61.111 0.00 0.00 0.00 3.07
116 117 2.270297 ATTTGACGCCCGCAAGCATC 62.270 55.000 0.00 0.00 0.00 3.91
117 118 1.029408 TATTTGACGCCCGCAAGCAT 61.029 50.000 0.00 0.00 0.00 3.79
118 119 1.643868 CTATTTGACGCCCGCAAGCA 61.644 55.000 0.00 0.00 0.00 3.91
119 120 1.062525 CTATTTGACGCCCGCAAGC 59.937 57.895 0.00 0.00 0.00 4.01
120 121 0.742990 TCCTATTTGACGCCCGCAAG 60.743 55.000 0.00 0.00 0.00 4.01
121 122 0.107410 ATCCTATTTGACGCCCGCAA 60.107 50.000 0.00 0.00 0.00 4.85
122 123 0.531974 GATCCTATTTGACGCCCGCA 60.532 55.000 0.00 0.00 0.00 5.69
123 124 1.228657 GGATCCTATTTGACGCCCGC 61.229 60.000 3.84 0.00 0.00 6.13
124 125 0.944311 CGGATCCTATTTGACGCCCG 60.944 60.000 10.75 0.00 0.00 6.13
125 126 1.228657 GCGGATCCTATTTGACGCCC 61.229 60.000 10.75 0.00 41.02 6.13
126 127 2.235546 GCGGATCCTATTTGACGCC 58.764 57.895 10.75 0.00 41.02 5.68
127 128 0.249911 AGGCGGATCCTATTTGACGC 60.250 55.000 10.75 5.16 45.41 5.19
128 129 3.989104 AGGCGGATCCTATTTGACG 57.011 52.632 10.75 0.00 45.41 4.35
142 143 1.864711 CAACCAATCCGTGTATAGGCG 59.135 52.381 0.00 0.00 0.00 5.52
143 144 1.602377 GCAACCAATCCGTGTATAGGC 59.398 52.381 0.00 0.00 0.00 3.93
144 145 3.131396 GAGCAACCAATCCGTGTATAGG 58.869 50.000 0.00 0.00 0.00 2.57
145 146 4.060038 AGAGCAACCAATCCGTGTATAG 57.940 45.455 0.00 0.00 0.00 1.31
146 147 4.081365 TGAAGAGCAACCAATCCGTGTATA 60.081 41.667 0.00 0.00 0.00 1.47
147 148 3.270877 GAAGAGCAACCAATCCGTGTAT 58.729 45.455 0.00 0.00 0.00 2.29
148 149 2.037902 TGAAGAGCAACCAATCCGTGTA 59.962 45.455 0.00 0.00 0.00 2.90
149 150 1.202758 TGAAGAGCAACCAATCCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
150 151 1.466167 CTGAAGAGCAACCAATCCGTG 59.534 52.381 0.00 0.00 0.00 4.94
151 152 1.347707 TCTGAAGAGCAACCAATCCGT 59.652 47.619 0.00 0.00 0.00 4.69
152 153 2.099141 TCTGAAGAGCAACCAATCCG 57.901 50.000 0.00 0.00 0.00 4.18
153 154 4.520492 TCTTTTCTGAAGAGCAACCAATCC 59.480 41.667 3.21 0.00 0.00 3.01
154 155 5.695851 TCTTTTCTGAAGAGCAACCAATC 57.304 39.130 3.21 0.00 0.00 2.67
155 156 6.469782 TTTCTTTTCTGAAGAGCAACCAAT 57.530 33.333 3.21 0.00 0.00 3.16
156 157 5.913137 TTTCTTTTCTGAAGAGCAACCAA 57.087 34.783 3.21 0.00 0.00 3.67
157 158 5.913137 TTTTCTTTTCTGAAGAGCAACCA 57.087 34.783 3.21 0.00 0.00 3.67
158 159 6.201615 CCATTTTTCTTTTCTGAAGAGCAACC 59.798 38.462 3.21 0.00 0.00 3.77
159 160 6.758416 ACCATTTTTCTTTTCTGAAGAGCAAC 59.242 34.615 3.21 0.00 0.00 4.17
160 161 6.877236 ACCATTTTTCTTTTCTGAAGAGCAA 58.123 32.000 3.21 0.00 0.00 3.91
161 162 6.322201 AGACCATTTTTCTTTTCTGAAGAGCA 59.678 34.615 3.21 0.00 0.00 4.26
162 163 6.640092 CAGACCATTTTTCTTTTCTGAAGAGC 59.360 38.462 3.21 0.00 33.71 4.09
163 164 7.934457 TCAGACCATTTTTCTTTTCTGAAGAG 58.066 34.615 1.71 1.71 37.21 2.85
164 165 7.880160 TCAGACCATTTTTCTTTTCTGAAGA 57.120 32.000 0.00 0.00 37.21 2.87
167 168 6.925165 GCATTCAGACCATTTTTCTTTTCTGA 59.075 34.615 0.00 0.00 38.13 3.27
168 169 6.146673 GGCATTCAGACCATTTTTCTTTTCTG 59.853 38.462 0.00 0.00 33.26 3.02
169 170 6.226052 GGCATTCAGACCATTTTTCTTTTCT 58.774 36.000 0.00 0.00 0.00 2.52
170 171 6.471976 GGCATTCAGACCATTTTTCTTTTC 57.528 37.500 0.00 0.00 0.00 2.29
202 203 7.218614 TCATACTACGGGTTTCTCAAAAAGAA 58.781 34.615 0.00 0.00 42.35 2.52
203 204 6.761312 TCATACTACGGGTTTCTCAAAAAGA 58.239 36.000 0.00 0.00 0.00 2.52
204 205 7.429636 TTCATACTACGGGTTTCTCAAAAAG 57.570 36.000 0.00 0.00 0.00 2.27
205 206 7.574217 GCATTCATACTACGGGTTTCTCAAAAA 60.574 37.037 0.00 0.00 0.00 1.94
206 207 6.128117 GCATTCATACTACGGGTTTCTCAAAA 60.128 38.462 0.00 0.00 0.00 2.44
207 208 5.353123 GCATTCATACTACGGGTTTCTCAAA 59.647 40.000 0.00 0.00 0.00 2.69
208 209 4.873827 GCATTCATACTACGGGTTTCTCAA 59.126 41.667 0.00 0.00 0.00 3.02
209 210 4.439057 GCATTCATACTACGGGTTTCTCA 58.561 43.478 0.00 0.00 0.00 3.27
210 211 3.808174 GGCATTCATACTACGGGTTTCTC 59.192 47.826 0.00 0.00 0.00 2.87
211 212 3.740141 CGGCATTCATACTACGGGTTTCT 60.740 47.826 0.00 0.00 0.00 2.52
212 213 2.542595 CGGCATTCATACTACGGGTTTC 59.457 50.000 0.00 0.00 0.00 2.78
213 214 2.093341 ACGGCATTCATACTACGGGTTT 60.093 45.455 0.00 0.00 0.00 3.27
214 215 1.483415 ACGGCATTCATACTACGGGTT 59.517 47.619 0.00 0.00 0.00 4.11
215 216 1.117150 ACGGCATTCATACTACGGGT 58.883 50.000 0.00 0.00 0.00 5.28
216 217 2.234300 AACGGCATTCATACTACGGG 57.766 50.000 0.00 0.00 0.00 5.28
217 218 2.729882 GCTAACGGCATTCATACTACGG 59.270 50.000 0.00 0.00 41.35 4.02
218 219 3.639538 AGCTAACGGCATTCATACTACG 58.360 45.455 0.00 0.00 44.79 3.51
219 220 5.293569 ACAAAGCTAACGGCATTCATACTAC 59.706 40.000 0.00 0.00 44.79 2.73
220 221 5.424757 ACAAAGCTAACGGCATTCATACTA 58.575 37.500 0.00 0.00 44.79 1.82
221 222 4.261801 ACAAAGCTAACGGCATTCATACT 58.738 39.130 0.00 0.00 44.79 2.12
222 223 4.495844 GGACAAAGCTAACGGCATTCATAC 60.496 45.833 0.00 0.00 44.79 2.39
223 224 3.625764 GGACAAAGCTAACGGCATTCATA 59.374 43.478 0.00 0.00 44.79 2.15
224 225 2.423538 GGACAAAGCTAACGGCATTCAT 59.576 45.455 0.00 0.00 44.79 2.57
225 226 1.810151 GGACAAAGCTAACGGCATTCA 59.190 47.619 0.00 0.00 44.79 2.57
226 227 1.810151 TGGACAAAGCTAACGGCATTC 59.190 47.619 0.00 0.00 44.79 2.67
227 228 1.812571 CTGGACAAAGCTAACGGCATT 59.187 47.619 0.00 0.00 44.79 3.56
228 229 1.271379 ACTGGACAAAGCTAACGGCAT 60.271 47.619 0.00 0.00 44.79 4.40
229 230 0.107831 ACTGGACAAAGCTAACGGCA 59.892 50.000 0.00 0.00 44.79 5.69
230 231 1.069227 CAACTGGACAAAGCTAACGGC 60.069 52.381 0.00 0.00 42.19 5.68
231 232 2.218603 ACAACTGGACAAAGCTAACGG 58.781 47.619 0.00 0.00 0.00 4.44
232 233 3.963383 AACAACTGGACAAAGCTAACG 57.037 42.857 0.00 0.00 0.00 3.18
233 234 5.298527 ACCTTAACAACTGGACAAAGCTAAC 59.701 40.000 0.00 0.00 0.00 2.34
234 235 5.442391 ACCTTAACAACTGGACAAAGCTAA 58.558 37.500 0.00 0.00 0.00 3.09
235 236 5.043737 ACCTTAACAACTGGACAAAGCTA 57.956 39.130 0.00 0.00 0.00 3.32
236 237 3.898482 ACCTTAACAACTGGACAAAGCT 58.102 40.909 0.00 0.00 0.00 3.74
237 238 4.649088 AACCTTAACAACTGGACAAAGC 57.351 40.909 0.00 0.00 0.00 3.51
238 239 5.359860 AGGAAACCTTAACAACTGGACAAAG 59.640 40.000 0.00 0.00 0.00 2.77
239 240 5.265989 AGGAAACCTTAACAACTGGACAAA 58.734 37.500 0.00 0.00 0.00 2.83
240 241 4.862371 AGGAAACCTTAACAACTGGACAA 58.138 39.130 0.00 0.00 0.00 3.18
241 242 4.513406 AGGAAACCTTAACAACTGGACA 57.487 40.909 0.00 0.00 0.00 4.02
242 243 6.947644 TTTAGGAAACCTTAACAACTGGAC 57.052 37.500 0.00 0.00 34.61 4.02
243 244 7.957992 TTTTTAGGAAACCTTAACAACTGGA 57.042 32.000 0.00 0.00 34.61 3.86
244 245 8.201464 ACATTTTTAGGAAACCTTAACAACTGG 58.799 33.333 0.00 0.00 34.61 4.00
245 246 9.594478 AACATTTTTAGGAAACCTTAACAACTG 57.406 29.630 0.00 0.00 34.61 3.16
246 247 9.594478 CAACATTTTTAGGAAACCTTAACAACT 57.406 29.630 0.00 0.00 34.61 3.16
247 248 8.332464 GCAACATTTTTAGGAAACCTTAACAAC 58.668 33.333 0.00 0.00 34.61 3.32
248 249 8.261522 AGCAACATTTTTAGGAAACCTTAACAA 58.738 29.630 0.00 0.00 34.61 2.83
249 250 7.787028 AGCAACATTTTTAGGAAACCTTAACA 58.213 30.769 0.00 0.00 34.61 2.41
250 251 7.384115 GGAGCAACATTTTTAGGAAACCTTAAC 59.616 37.037 0.00 0.00 34.61 2.01
251 252 7.438564 GGAGCAACATTTTTAGGAAACCTTAA 58.561 34.615 0.00 0.00 34.61 1.85
252 253 6.014925 GGGAGCAACATTTTTAGGAAACCTTA 60.015 38.462 0.00 0.00 34.61 2.69
253 254 5.221641 GGGAGCAACATTTTTAGGAAACCTT 60.222 40.000 0.00 0.00 34.61 3.50
254 255 4.283467 GGGAGCAACATTTTTAGGAAACCT 59.717 41.667 0.00 0.00 37.71 3.50
255 256 4.283467 AGGGAGCAACATTTTTAGGAAACC 59.717 41.667 0.00 0.00 0.00 3.27
256 257 5.468540 AGGGAGCAACATTTTTAGGAAAC 57.531 39.130 0.00 0.00 0.00 2.78
343 369 6.073222 ACGGACTGAAATGAGTGAATAAACAC 60.073 38.462 0.00 0.00 40.60 3.32
344 370 5.995282 ACGGACTGAAATGAGTGAATAAACA 59.005 36.000 0.00 0.00 0.00 2.83
345 371 6.481954 ACGGACTGAAATGAGTGAATAAAC 57.518 37.500 0.00 0.00 0.00 2.01
349 375 8.861086 ACTATATACGGACTGAAATGAGTGAAT 58.139 33.333 0.00 0.00 0.00 2.57
350 376 8.234136 ACTATATACGGACTGAAATGAGTGAA 57.766 34.615 0.00 0.00 0.00 3.18
351 377 7.040617 GGACTATATACGGACTGAAATGAGTGA 60.041 40.741 0.00 0.00 0.00 3.41
352 378 7.085116 GGACTATATACGGACTGAAATGAGTG 58.915 42.308 0.00 0.00 0.00 3.51
353 379 6.776116 TGGACTATATACGGACTGAAATGAGT 59.224 38.462 0.00 0.00 0.00 3.41
354 380 7.215719 TGGACTATATACGGACTGAAATGAG 57.784 40.000 0.00 0.00 0.00 2.90
355 381 7.776618 ATGGACTATATACGGACTGAAATGA 57.223 36.000 0.00 0.00 0.00 2.57
358 384 8.033038 GCAATATGGACTATATACGGACTGAAA 58.967 37.037 0.00 0.00 31.68 2.69
359 385 7.177744 TGCAATATGGACTATATACGGACTGAA 59.822 37.037 0.00 0.00 31.68 3.02
360 386 6.661805 TGCAATATGGACTATATACGGACTGA 59.338 38.462 0.00 0.00 31.68 3.41
361 387 6.863275 TGCAATATGGACTATATACGGACTG 58.137 40.000 0.00 0.00 31.68 3.51
362 388 7.476540 TTGCAATATGGACTATATACGGACT 57.523 36.000 0.00 0.00 31.68 3.85
363 389 9.982651 ATATTGCAATATGGACTATATACGGAC 57.017 33.333 27.22 0.00 31.68 4.79
365 391 9.424319 GGATATTGCAATATGGACTATATACGG 57.576 37.037 31.58 0.00 31.96 4.02
366 392 9.129209 CGGATATTGCAATATGGACTATATACG 57.871 37.037 31.58 17.54 32.42 3.06
369 395 8.704668 TGTCGGATATTGCAATATGGACTATAT 58.295 33.333 33.44 17.72 35.07 0.86
370 396 7.979537 GTGTCGGATATTGCAATATGGACTATA 59.020 37.037 33.44 23.06 35.07 1.31
371 397 6.818644 GTGTCGGATATTGCAATATGGACTAT 59.181 38.462 33.44 18.77 35.07 2.12
372 398 6.163476 GTGTCGGATATTGCAATATGGACTA 58.837 40.000 33.44 25.27 35.07 2.59
383 409 8.721478 ACAAATATAAGATGTGTCGGATATTGC 58.279 33.333 0.00 0.00 32.03 3.56
390 416 6.410845 CGTTCACAAATATAAGATGTGTCGG 58.589 40.000 12.73 3.80 43.72 4.79
392 418 7.180079 CACCGTTCACAAATATAAGATGTGTC 58.820 38.462 12.73 8.50 43.72 3.67
394 420 6.458206 CCCACCGTTCACAAATATAAGATGTG 60.458 42.308 8.74 8.74 44.45 3.21
549 577 2.348591 GGAAAGTCGACGCAAACTGAAG 60.349 50.000 10.46 0.00 0.00 3.02
623 651 3.510388 TCGCTGGACAAAGAGAGTATG 57.490 47.619 0.00 0.00 0.00 2.39
633 661 1.872952 CACTGTTCATTCGCTGGACAA 59.127 47.619 1.34 0.00 42.96 3.18
640 712 1.234821 TTGGTCCACTGTTCATTCGC 58.765 50.000 0.00 0.00 0.00 4.70
645 717 1.384525 CGGTTTTGGTCCACTGTTCA 58.615 50.000 0.00 0.00 0.00 3.18
650 722 1.528309 CTGCCGGTTTTGGTCCACT 60.528 57.895 1.90 0.00 0.00 4.00
664 736 3.274288 CAATACCAGAGAAGTTCCTGCC 58.726 50.000 13.11 0.00 0.00 4.85
762 1608 6.964934 GTGTATCTGTTTGTCAACGTCTTTTT 59.035 34.615 0.00 0.00 35.40 1.94
763 1609 6.315393 AGTGTATCTGTTTGTCAACGTCTTTT 59.685 34.615 0.00 0.00 35.40 2.27
764 1610 5.815740 AGTGTATCTGTTTGTCAACGTCTTT 59.184 36.000 0.00 0.00 35.40 2.52
775 1621 9.599866 TCATAACCTCATAAGTGTATCTGTTTG 57.400 33.333 0.00 0.00 0.00 2.93
821 1667 5.095809 TGGCTAAAAGTAGGTTCCTTCCTA 58.904 41.667 0.00 0.00 38.86 2.94
822 1668 3.914435 TGGCTAAAAGTAGGTTCCTTCCT 59.086 43.478 0.00 0.00 41.20 3.36
823 1669 4.296621 TGGCTAAAAGTAGGTTCCTTCC 57.703 45.455 0.00 0.00 0.00 3.46
824 1670 5.314529 AGTTGGCTAAAAGTAGGTTCCTTC 58.685 41.667 0.00 0.00 0.00 3.46
825 1671 5.320488 AGTTGGCTAAAAGTAGGTTCCTT 57.680 39.130 0.00 0.00 0.00 3.36
826 1672 4.995624 AGTTGGCTAAAAGTAGGTTCCT 57.004 40.909 0.00 0.00 0.00 3.36
827 1673 5.642491 CAGTAGTTGGCTAAAAGTAGGTTCC 59.358 44.000 0.00 0.00 0.00 3.62
828 1674 6.147328 CACAGTAGTTGGCTAAAAGTAGGTTC 59.853 42.308 0.00 0.00 0.00 3.62
829 1675 5.995897 CACAGTAGTTGGCTAAAAGTAGGTT 59.004 40.000 0.00 0.00 0.00 3.50
830 1676 5.512576 CCACAGTAGTTGGCTAAAAGTAGGT 60.513 44.000 0.00 0.00 0.00 3.08
894 1761 5.719173 TCTCAGTTGGTTTTTGAACTTTGG 58.281 37.500 0.00 0.00 29.73 3.28
895 1762 7.622048 GCTTTCTCAGTTGGTTTTTGAACTTTG 60.622 37.037 0.00 0.00 29.73 2.77
896 1763 6.368791 GCTTTCTCAGTTGGTTTTTGAACTTT 59.631 34.615 0.00 0.00 29.73 2.66
897 1764 5.869344 GCTTTCTCAGTTGGTTTTTGAACTT 59.131 36.000 0.00 0.00 29.73 2.66
898 1765 5.047377 TGCTTTCTCAGTTGGTTTTTGAACT 60.047 36.000 0.00 0.00 32.48 3.01
899 1766 5.062183 GTGCTTTCTCAGTTGGTTTTTGAAC 59.938 40.000 0.00 0.00 0.00 3.18
900 1767 5.167845 GTGCTTTCTCAGTTGGTTTTTGAA 58.832 37.500 0.00 0.00 0.00 2.69
901 1768 4.219507 TGTGCTTTCTCAGTTGGTTTTTGA 59.780 37.500 0.00 0.00 0.00 2.69
902 1769 4.493547 TGTGCTTTCTCAGTTGGTTTTTG 58.506 39.130 0.00 0.00 0.00 2.44
903 1770 4.799564 TGTGCTTTCTCAGTTGGTTTTT 57.200 36.364 0.00 0.00 0.00 1.94
904 1771 4.202151 GGATGTGCTTTCTCAGTTGGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
905 1772 3.319122 GGATGTGCTTTCTCAGTTGGTTT 59.681 43.478 0.00 0.00 0.00 3.27
906 1773 2.887152 GGATGTGCTTTCTCAGTTGGTT 59.113 45.455 0.00 0.00 0.00 3.67
907 1774 2.158623 TGGATGTGCTTTCTCAGTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
908 1775 2.507484 TGGATGTGCTTTCTCAGTTGG 58.493 47.619 0.00 0.00 0.00 3.77
909 1776 4.037208 ACTTTGGATGTGCTTTCTCAGTTG 59.963 41.667 0.00 0.00 0.00 3.16
910 1777 4.210331 ACTTTGGATGTGCTTTCTCAGTT 58.790 39.130 0.00 0.00 0.00 3.16
911 1778 3.825328 ACTTTGGATGTGCTTTCTCAGT 58.175 40.909 0.00 0.00 0.00 3.41
912 1779 4.320788 GGAACTTTGGATGTGCTTTCTCAG 60.321 45.833 0.00 0.00 0.00 3.35
913 1780 3.569701 GGAACTTTGGATGTGCTTTCTCA 59.430 43.478 0.00 0.00 0.00 3.27
914 1781 3.569701 TGGAACTTTGGATGTGCTTTCTC 59.430 43.478 0.00 0.00 0.00 2.87
915 1782 3.565307 TGGAACTTTGGATGTGCTTTCT 58.435 40.909 0.00 0.00 0.00 2.52
916 1783 4.320608 TTGGAACTTTGGATGTGCTTTC 57.679 40.909 0.00 0.00 0.00 2.62
917 1784 4.441792 GTTTGGAACTTTGGATGTGCTTT 58.558 39.130 0.00 0.00 0.00 3.51
918 1785 3.181466 GGTTTGGAACTTTGGATGTGCTT 60.181 43.478 0.00 0.00 0.00 3.91
919 1786 2.365293 GGTTTGGAACTTTGGATGTGCT 59.635 45.455 0.00 0.00 0.00 4.40
920 1787 2.547855 GGGTTTGGAACTTTGGATGTGC 60.548 50.000 0.00 0.00 0.00 4.57
921 1788 2.697751 TGGGTTTGGAACTTTGGATGTG 59.302 45.455 0.00 0.00 0.00 3.21
922 1789 3.039252 TGGGTTTGGAACTTTGGATGT 57.961 42.857 0.00 0.00 0.00 3.06
981 1859 2.655090 TCAGGCTCATGGTGTCAAAA 57.345 45.000 0.00 0.00 0.00 2.44
1125 2018 0.469331 TGACGGAGACCTTGGTGAGT 60.469 55.000 0.00 0.00 0.00 3.41
1342 2235 2.388890 GATGATGGCCAGGTCGGAGG 62.389 65.000 13.05 0.00 36.56 4.30
1343 2236 1.070445 GATGATGGCCAGGTCGGAG 59.930 63.158 13.05 0.00 36.56 4.63
1399 2295 2.125350 CGTTCCTCCTCAGCTGGC 60.125 66.667 15.13 0.00 0.00 4.85
1634 2530 3.411418 CTCGCCGACCATGTACGCT 62.411 63.158 3.74 0.00 0.00 5.07
1923 2849 3.735029 GACCTCGTGGACGTCGCT 61.735 66.667 11.17 0.00 40.80 4.93
2084 3010 1.810755 GGCAAGTTTAGGCACCACTAC 59.189 52.381 0.00 0.00 0.00 2.73
2125 3051 7.860373 CCAGTTCGATGTATTTTTCAAGTTCAA 59.140 33.333 0.00 0.00 0.00 2.69
2143 3069 4.020928 TGCCAAGTTATAGAACCAGTTCGA 60.021 41.667 4.94 0.39 43.97 3.71
2171 3097 5.237779 ACGTGATTTGAACCGTATTTGAACT 59.762 36.000 0.00 0.00 0.00 3.01
2218 3144 2.507484 GTGCCATGCTGCCATATCTAA 58.493 47.619 0.00 0.00 0.00 2.10
2266 3193 1.457303 GACGCACACTCTTCATGTCAC 59.543 52.381 0.00 0.00 0.00 3.67
2327 3263 3.951037 TGAAACTCAGCCTTGCAACTTTA 59.049 39.130 0.00 0.00 0.00 1.85
2455 3393 5.123820 CCATTTAACTCCACGATTGTGTCAT 59.876 40.000 12.19 0.00 44.92 3.06
2456 3394 4.454161 CCATTTAACTCCACGATTGTGTCA 59.546 41.667 12.19 0.00 44.92 3.58
2487 3425 3.168035 TGTGGAAAATGGGTGCACTAT 57.832 42.857 17.98 9.01 38.10 2.12
2873 3874 8.604035 ACTCATGCGAATTGTTGTATTAGTAAG 58.396 33.333 0.00 0.00 0.00 2.34
2886 3889 8.894409 TGTAATTCTAAAACTCATGCGAATTG 57.106 30.769 0.00 0.00 34.23 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.