Multiple sequence alignment - TraesCS7A01G417100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G417100 chr7A 100.000 3050 0 0 1 3050 608921600 608924649 0.000000e+00 5633.0
1 TraesCS7A01G417100 chr7B 95.726 1240 53 0 908 2147 567568205 567569444 0.000000e+00 1997.0
2 TraesCS7A01G417100 chr7B 89.662 532 36 8 1 518 567567683 567568209 0.000000e+00 660.0
3 TraesCS7A01G417100 chr7B 92.220 437 17 10 2294 2730 567570020 567570439 1.210000e-168 603.0
4 TraesCS7A01G417100 chr7B 97.887 142 3 0 2146 2287 567569490 567569631 2.350000e-61 246.0
5 TraesCS7A01G417100 chr7D 94.282 857 49 0 881 1737 529586440 529587296 0.000000e+00 1312.0
6 TraesCS7A01G417100 chr7D 93.833 454 15 5 2288 2741 529604018 529604458 0.000000e+00 671.0
7 TraesCS7A01G417100 chr7D 94.511 419 23 0 1729 2147 529602977 529603395 0.000000e+00 647.0
8 TraesCS7A01G417100 chr7D 93.427 213 14 0 2741 2953 529605374 529605586 1.760000e-82 316.0
9 TraesCS7A01G417100 chr7D 95.804 143 5 1 2146 2287 529603441 529603583 2.370000e-56 230.0
10 TraesCS7A01G417100 chr7D 86.239 109 6 5 2950 3050 529607049 529607156 3.220000e-20 110.0
11 TraesCS7A01G417100 chr7D 100.000 31 0 0 34 64 529586410 529586440 1.180000e-04 58.4
12 TraesCS7A01G417100 chr5D 92.857 364 23 2 2288 2651 169974975 169975335 2.690000e-145 525.0
13 TraesCS7A01G417100 chr5B 91.944 360 27 1 2288 2647 593661947 593662304 1.260000e-138 503.0
14 TraesCS7A01G417100 chr2D 90.556 360 32 1 2288 2647 386815287 386815644 2.750000e-130 475.0
15 TraesCS7A01G417100 chr2D 85.211 142 20 1 2288 2428 634831025 634831166 8.810000e-31 145.0
16 TraesCS7A01G417100 chr3B 89.918 367 35 1 2288 2654 146548604 146548968 3.560000e-129 472.0
17 TraesCS7A01G417100 chr2B 89.646 367 34 3 2288 2654 458106136 458106498 5.960000e-127 464.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G417100 chr7A 608921600 608924649 3049 False 5633.0 5633 100.00000 1 3050 1 chr7A.!!$F1 3049
1 TraesCS7A01G417100 chr7B 567567683 567570439 2756 False 876.5 1997 93.87375 1 2730 4 chr7B.!!$F1 2729
2 TraesCS7A01G417100 chr7D 529586410 529587296 886 False 685.2 1312 97.14100 34 1737 2 chr7D.!!$F1 1703
3 TraesCS7A01G417100 chr7D 529602977 529607156 4179 False 394.8 671 92.76280 1729 3050 5 chr7D.!!$F2 1321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 539 0.027586 GTCCGTATTTGTCCATGCGC 59.972 55.0 0.00 0.00 31.54 6.09 F
548 563 0.032403 TGCTTGCAAACATGTGGCTC 59.968 50.0 19.74 11.49 0.00 4.70 F
1741 1756 0.029567 GTGGTCGCCTCTAGATGACG 59.970 60.0 11.53 7.90 32.17 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1756 0.170561 CTGCAACCATCAAGCTCTGC 59.829 55.0 0.00 0.0 0.00 4.26 R
1973 1988 0.698818 AATTGAAGCCGGGAGAACCT 59.301 50.0 2.18 0.0 36.97 3.50 R
2810 4229 0.179056 ACACCACTTGTTCCGGTCAG 60.179 55.0 0.00 0.0 33.09 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.997021 CGCCTCTTCACTATGAGTGTTTT 59.003 43.478 6.51 0.00 46.03 2.43
71 73 3.857157 TGCCCCATGGTCTTATTCTAC 57.143 47.619 11.73 0.00 0.00 2.59
93 95 8.098912 TCTACGTTGTCTATATATGTAGCCTGA 58.901 37.037 0.00 0.00 33.46 3.86
105 107 2.031768 GCCTGATCATCCGAGGCC 59.968 66.667 11.02 0.00 45.69 5.19
118 121 4.981806 TCCGAGGCCAAAAATTGATAAG 57.018 40.909 5.01 0.00 0.00 1.73
128 131 8.445493 GGCCAAAAATTGATAAGAGACATTTTG 58.555 33.333 0.00 0.00 36.67 2.44
145 148 6.114767 ACATTTTGTCAGGCTCAATTTTTGT 58.885 32.000 0.00 0.00 0.00 2.83
147 150 3.624326 TGTCAGGCTCAATTTTTGTCG 57.376 42.857 0.00 0.00 0.00 4.35
165 171 3.872771 TGTCGTAGGTTCTTTTTGTGACC 59.127 43.478 0.00 0.00 0.00 4.02
169 175 4.274950 CGTAGGTTCTTTTTGTGACCATGT 59.725 41.667 0.00 0.00 0.00 3.21
398 411 1.936547 GTGCTCTGCTTACTACCATGC 59.063 52.381 0.00 0.00 0.00 4.06
403 416 4.201861 GCTCTGCTTACTACCATGCTTTTC 60.202 45.833 0.00 0.00 0.00 2.29
405 418 5.560724 TCTGCTTACTACCATGCTTTTCTT 58.439 37.500 0.00 0.00 0.00 2.52
413 426 2.649129 ATGCTTTTCTTGGGCGGGC 61.649 57.895 0.00 0.00 0.00 6.13
436 449 5.390613 CGGCTGTCCTATTTACAGTTTTTG 58.609 41.667 5.25 0.00 45.01 2.44
438 451 6.514376 CGGCTGTCCTATTTACAGTTTTTGTT 60.514 38.462 5.25 0.00 45.01 2.83
439 452 6.861572 GGCTGTCCTATTTACAGTTTTTGTTC 59.138 38.462 5.25 0.00 45.01 3.18
441 454 8.135529 GCTGTCCTATTTACAGTTTTTGTTCTT 58.864 33.333 5.25 0.00 45.01 2.52
442 455 9.450807 CTGTCCTATTTACAGTTTTTGTTCTTG 57.549 33.333 0.00 0.00 41.29 3.02
444 457 7.918562 GTCCTATTTACAGTTTTTGTTCTTGCA 59.081 33.333 0.00 0.00 41.29 4.08
445 458 8.134895 TCCTATTTACAGTTTTTGTTCTTGCAG 58.865 33.333 0.00 0.00 41.29 4.41
446 459 7.382218 CCTATTTACAGTTTTTGTTCTTGCAGG 59.618 37.037 0.00 0.00 41.29 4.85
447 460 3.525268 ACAGTTTTTGTTCTTGCAGGG 57.475 42.857 0.00 0.00 36.31 4.45
454 469 0.255890 TGTTCTTGCAGGGGCTATCC 59.744 55.000 0.00 0.00 41.91 2.59
464 479 4.852118 TGCAGGGGCTATCCTTCTATTTAT 59.148 41.667 0.00 0.00 41.91 1.40
469 484 4.192317 GGCTATCCTTCTATTTATGGCCG 58.808 47.826 0.00 0.00 36.45 6.13
483 498 1.449778 GGCCGGTCTTTGCCTAGTC 60.450 63.158 1.90 0.00 44.46 2.59
485 500 1.900545 GCCGGTCTTTGCCTAGTCCT 61.901 60.000 1.90 0.00 0.00 3.85
508 523 3.676291 TTTTTGCCAATTGCCTAGTCC 57.324 42.857 0.00 0.00 40.16 3.85
513 528 2.092646 TGCCAATTGCCTAGTCCGTATT 60.093 45.455 0.00 0.00 40.16 1.89
514 529 2.949644 GCCAATTGCCTAGTCCGTATTT 59.050 45.455 0.00 0.00 0.00 1.40
515 530 3.243068 GCCAATTGCCTAGTCCGTATTTG 60.243 47.826 0.00 0.00 0.00 2.32
516 531 3.945285 CCAATTGCCTAGTCCGTATTTGT 59.055 43.478 0.00 0.00 0.00 2.83
517 532 4.035208 CCAATTGCCTAGTCCGTATTTGTC 59.965 45.833 0.00 0.00 0.00 3.18
518 533 2.973694 TGCCTAGTCCGTATTTGTCC 57.026 50.000 0.00 0.00 0.00 4.02
519 534 2.181125 TGCCTAGTCCGTATTTGTCCA 58.819 47.619 0.00 0.00 0.00 4.02
520 535 2.769663 TGCCTAGTCCGTATTTGTCCAT 59.230 45.455 0.00 0.00 0.00 3.41
521 536 3.131396 GCCTAGTCCGTATTTGTCCATG 58.869 50.000 0.00 0.00 0.00 3.66
522 537 3.131396 CCTAGTCCGTATTTGTCCATGC 58.869 50.000 0.00 0.00 0.00 4.06
523 538 1.651987 AGTCCGTATTTGTCCATGCG 58.348 50.000 0.00 0.00 32.58 4.73
524 539 0.027586 GTCCGTATTTGTCCATGCGC 59.972 55.000 0.00 0.00 31.54 6.09
525 540 0.107897 TCCGTATTTGTCCATGCGCT 60.108 50.000 9.73 0.00 31.54 5.92
526 541 1.137282 TCCGTATTTGTCCATGCGCTA 59.863 47.619 9.73 0.00 31.54 4.26
527 542 1.526887 CCGTATTTGTCCATGCGCTAG 59.473 52.381 9.73 0.00 31.54 3.42
528 543 2.469826 CGTATTTGTCCATGCGCTAGA 58.530 47.619 9.73 0.00 0.00 2.43
529 544 3.059884 CGTATTTGTCCATGCGCTAGAT 58.940 45.455 9.73 0.00 0.00 1.98
530 545 3.120889 CGTATTTGTCCATGCGCTAGATG 60.121 47.826 9.73 3.77 0.00 2.90
531 546 1.016627 TTTGTCCATGCGCTAGATGC 58.983 50.000 9.73 0.00 38.57 3.91
532 547 0.178767 TTGTCCATGCGCTAGATGCT 59.821 50.000 9.73 0.00 40.11 3.79
533 548 0.178767 TGTCCATGCGCTAGATGCTT 59.821 50.000 9.73 0.38 40.11 3.91
534 549 0.585357 GTCCATGCGCTAGATGCTTG 59.415 55.000 9.73 13.19 40.11 4.01
535 550 1.162181 TCCATGCGCTAGATGCTTGC 61.162 55.000 9.73 0.00 40.11 4.01
536 551 1.441732 CCATGCGCTAGATGCTTGCA 61.442 55.000 9.73 0.00 41.02 4.08
537 552 0.379316 CATGCGCTAGATGCTTGCAA 59.621 50.000 9.73 0.00 40.38 4.08
538 553 1.097232 ATGCGCTAGATGCTTGCAAA 58.903 45.000 9.73 0.00 40.38 3.68
539 554 0.168788 TGCGCTAGATGCTTGCAAAC 59.831 50.000 9.73 0.00 35.63 2.93
540 555 0.168788 GCGCTAGATGCTTGCAAACA 59.831 50.000 4.77 4.77 40.11 2.83
541 556 1.202222 GCGCTAGATGCTTGCAAACAT 60.202 47.619 14.99 14.99 40.11 2.71
542 557 2.447250 CGCTAGATGCTTGCAAACATG 58.553 47.619 19.59 7.11 40.11 3.21
543 558 2.159476 CGCTAGATGCTTGCAAACATGT 60.159 45.455 19.59 17.51 40.11 3.21
544 559 3.176708 GCTAGATGCTTGCAAACATGTG 58.823 45.455 19.59 11.24 38.95 3.21
545 560 2.736144 AGATGCTTGCAAACATGTGG 57.264 45.000 19.59 0.00 0.00 4.17
546 561 1.073177 GATGCTTGCAAACATGTGGC 58.927 50.000 19.59 14.14 0.00 5.01
547 562 0.682852 ATGCTTGCAAACATGTGGCT 59.317 45.000 14.36 0.00 0.00 4.75
548 563 0.032403 TGCTTGCAAACATGTGGCTC 59.968 50.000 19.74 11.49 0.00 4.70
549 564 0.668401 GCTTGCAAACATGTGGCTCC 60.668 55.000 19.74 7.75 0.00 4.70
550 565 0.963962 CTTGCAAACATGTGGCTCCT 59.036 50.000 19.74 0.00 0.00 3.69
551 566 0.675083 TTGCAAACATGTGGCTCCTG 59.325 50.000 19.74 4.69 0.00 3.86
552 567 1.180456 TGCAAACATGTGGCTCCTGG 61.180 55.000 19.74 0.00 0.00 4.45
553 568 1.880819 GCAAACATGTGGCTCCTGGG 61.881 60.000 13.83 0.00 0.00 4.45
554 569 1.077265 AAACATGTGGCTCCTGGGG 59.923 57.895 0.00 0.00 0.00 4.96
555 570 3.590466 AACATGTGGCTCCTGGGGC 62.590 63.158 10.98 10.98 0.00 5.80
556 571 3.736224 CATGTGGCTCCTGGGGCT 61.736 66.667 19.75 0.00 0.00 5.19
557 572 2.943265 ATGTGGCTCCTGGGGCTT 60.943 61.111 19.75 0.00 0.00 4.35
558 573 1.619363 ATGTGGCTCCTGGGGCTTA 60.619 57.895 19.75 5.15 0.00 3.09
559 574 1.926426 ATGTGGCTCCTGGGGCTTAC 61.926 60.000 19.75 17.64 0.00 2.34
560 575 2.204074 TGGCTCCTGGGGCTTACA 60.204 61.111 19.75 5.06 0.00 2.41
561 576 1.619363 TGGCTCCTGGGGCTTACAT 60.619 57.895 19.75 0.00 0.00 2.29
562 577 1.152881 GGCTCCTGGGGCTTACATG 60.153 63.158 19.75 0.00 0.00 3.21
563 578 1.609783 GCTCCTGGGGCTTACATGT 59.390 57.895 12.38 2.69 0.00 3.21
564 579 0.837272 GCTCCTGGGGCTTACATGTA 59.163 55.000 12.38 0.08 0.00 2.29
565 580 1.202698 GCTCCTGGGGCTTACATGTAG 60.203 57.143 12.38 2.17 0.00 2.74
566 581 0.837272 TCCTGGGGCTTACATGTAGC 59.163 55.000 15.03 15.03 0.00 3.58
580 595 4.478843 CATGTAGCCATGCTATGTGTTC 57.521 45.455 0.00 0.00 43.30 3.18
581 596 3.625649 TGTAGCCATGCTATGTGTTCA 57.374 42.857 0.00 0.00 43.30 3.18
582 597 3.534554 TGTAGCCATGCTATGTGTTCAG 58.465 45.455 0.00 0.00 43.30 3.02
583 598 2.048444 AGCCATGCTATGTGTTCAGG 57.952 50.000 0.00 0.00 36.99 3.86
584 599 1.561076 AGCCATGCTATGTGTTCAGGA 59.439 47.619 0.00 0.00 36.99 3.86
585 600 2.025981 AGCCATGCTATGTGTTCAGGAA 60.026 45.455 0.00 0.00 36.99 3.36
586 601 2.357009 GCCATGCTATGTGTTCAGGAAG 59.643 50.000 0.00 0.00 0.00 3.46
587 602 2.357009 CCATGCTATGTGTTCAGGAAGC 59.643 50.000 0.00 0.00 0.00 3.86
588 603 2.113860 TGCTATGTGTTCAGGAAGCC 57.886 50.000 0.00 0.00 31.28 4.35
589 604 1.350684 TGCTATGTGTTCAGGAAGCCA 59.649 47.619 0.00 0.00 31.28 4.75
590 605 2.224744 TGCTATGTGTTCAGGAAGCCAA 60.225 45.455 0.00 0.00 31.28 4.52
591 606 2.819608 GCTATGTGTTCAGGAAGCCAAA 59.180 45.455 0.00 0.00 0.00 3.28
592 607 3.255642 GCTATGTGTTCAGGAAGCCAAAA 59.744 43.478 0.00 0.00 0.00 2.44
593 608 3.733443 ATGTGTTCAGGAAGCCAAAAC 57.267 42.857 0.00 0.00 0.00 2.43
594 609 2.733956 TGTGTTCAGGAAGCCAAAACT 58.266 42.857 0.00 0.00 0.00 2.66
595 610 3.096092 TGTGTTCAGGAAGCCAAAACTT 58.904 40.909 0.00 0.00 0.00 2.66
596 611 3.119173 TGTGTTCAGGAAGCCAAAACTTG 60.119 43.478 0.00 0.00 0.00 3.16
597 612 3.096092 TGTTCAGGAAGCCAAAACTTGT 58.904 40.909 0.00 0.00 0.00 3.16
598 613 3.513515 TGTTCAGGAAGCCAAAACTTGTT 59.486 39.130 0.00 0.00 0.00 2.83
599 614 4.707448 TGTTCAGGAAGCCAAAACTTGTTA 59.293 37.500 0.00 0.00 0.00 2.41
600 615 5.362430 TGTTCAGGAAGCCAAAACTTGTTAT 59.638 36.000 0.00 0.00 0.00 1.89
601 616 6.127196 TGTTCAGGAAGCCAAAACTTGTTATT 60.127 34.615 0.00 0.00 0.00 1.40
602 617 6.478512 TCAGGAAGCCAAAACTTGTTATTT 57.521 33.333 0.00 0.00 0.00 1.40
603 618 6.883744 TCAGGAAGCCAAAACTTGTTATTTT 58.116 32.000 0.00 0.00 0.00 1.82
604 619 6.983890 TCAGGAAGCCAAAACTTGTTATTTTC 59.016 34.615 0.00 0.00 0.00 2.29
605 620 6.202762 CAGGAAGCCAAAACTTGTTATTTTCC 59.797 38.462 0.00 0.00 0.00 3.13
606 621 6.099701 AGGAAGCCAAAACTTGTTATTTTCCT 59.900 34.615 0.00 0.00 0.00 3.36
607 622 6.765989 GGAAGCCAAAACTTGTTATTTTCCTT 59.234 34.615 0.00 0.00 0.00 3.36
608 623 7.254761 GGAAGCCAAAACTTGTTATTTTCCTTG 60.255 37.037 0.00 0.00 0.00 3.61
609 624 6.649155 AGCCAAAACTTGTTATTTTCCTTGT 58.351 32.000 0.00 0.00 0.00 3.16
610 625 7.787028 AGCCAAAACTTGTTATTTTCCTTGTA 58.213 30.769 0.00 0.00 0.00 2.41
611 626 7.926018 AGCCAAAACTTGTTATTTTCCTTGTAG 59.074 33.333 0.00 0.00 0.00 2.74
612 627 7.923878 GCCAAAACTTGTTATTTTCCTTGTAGA 59.076 33.333 0.00 0.00 0.00 2.59
613 628 9.810545 CCAAAACTTGTTATTTTCCTTGTAGAA 57.189 29.630 0.00 0.00 0.00 2.10
616 631 9.511144 AAACTTGTTATTTTCCTTGTAGAAACG 57.489 29.630 0.00 0.00 35.53 3.60
617 632 8.217131 ACTTGTTATTTTCCTTGTAGAAACGT 57.783 30.769 0.00 0.00 35.53 3.99
618 633 8.126700 ACTTGTTATTTTCCTTGTAGAAACGTG 58.873 33.333 0.00 0.00 35.53 4.49
619 634 7.789273 TGTTATTTTCCTTGTAGAAACGTGA 57.211 32.000 0.00 0.00 35.53 4.35
620 635 8.385898 TGTTATTTTCCTTGTAGAAACGTGAT 57.614 30.769 0.00 0.00 35.53 3.06
621 636 8.500773 TGTTATTTTCCTTGTAGAAACGTGATC 58.499 33.333 0.00 0.00 35.53 2.92
622 637 5.585500 TTTTCCTTGTAGAAACGTGATCG 57.415 39.130 0.00 0.00 43.34 3.69
623 638 2.602878 TCCTTGTAGAAACGTGATCGC 58.397 47.619 0.00 0.00 41.18 4.58
624 639 2.230508 TCCTTGTAGAAACGTGATCGCT 59.769 45.455 4.48 0.00 41.18 4.93
625 640 2.993899 CCTTGTAGAAACGTGATCGCTT 59.006 45.455 4.48 0.00 41.18 4.68
626 641 3.060895 CCTTGTAGAAACGTGATCGCTTC 59.939 47.826 4.48 2.56 40.88 3.86
627 642 2.602878 TGTAGAAACGTGATCGCTTCC 58.397 47.619 4.48 0.00 41.30 3.46
628 643 2.230508 TGTAGAAACGTGATCGCTTCCT 59.769 45.455 4.48 0.00 41.30 3.36
629 644 2.457366 AGAAACGTGATCGCTTCCTT 57.543 45.000 4.48 0.00 41.30 3.36
630 645 2.069273 AGAAACGTGATCGCTTCCTTG 58.931 47.619 4.48 0.00 41.30 3.61
631 646 1.798813 GAAACGTGATCGCTTCCTTGT 59.201 47.619 4.48 0.00 41.18 3.16
632 647 2.736144 AACGTGATCGCTTCCTTGTA 57.264 45.000 4.48 0.00 41.18 2.41
633 648 2.961526 ACGTGATCGCTTCCTTGTAT 57.038 45.000 4.48 0.00 41.18 2.29
634 649 2.540515 ACGTGATCGCTTCCTTGTATG 58.459 47.619 4.48 0.00 41.18 2.39
635 650 1.860950 CGTGATCGCTTCCTTGTATGG 59.139 52.381 4.48 0.00 0.00 2.74
636 651 2.738643 CGTGATCGCTTCCTTGTATGGT 60.739 50.000 4.48 0.00 0.00 3.55
637 652 3.490249 CGTGATCGCTTCCTTGTATGGTA 60.490 47.826 4.48 0.00 0.00 3.25
638 653 3.802685 GTGATCGCTTCCTTGTATGGTAC 59.197 47.826 0.00 0.00 0.00 3.34
639 654 2.572191 TCGCTTCCTTGTATGGTACG 57.428 50.000 0.00 0.00 0.00 3.67
640 655 1.820519 TCGCTTCCTTGTATGGTACGT 59.179 47.619 0.00 0.00 0.00 3.57
641 656 2.231964 TCGCTTCCTTGTATGGTACGTT 59.768 45.455 0.00 0.00 0.00 3.99
642 657 2.997986 CGCTTCCTTGTATGGTACGTTT 59.002 45.455 0.00 0.00 0.00 3.60
643 658 3.181524 CGCTTCCTTGTATGGTACGTTTG 60.182 47.826 0.00 0.00 0.00 2.93
644 659 3.998341 GCTTCCTTGTATGGTACGTTTGA 59.002 43.478 0.00 0.00 0.00 2.69
645 660 4.142966 GCTTCCTTGTATGGTACGTTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
646 661 4.603989 TCCTTGTATGGTACGTTTGACA 57.396 40.909 0.00 0.00 0.00 3.58
647 662 4.562082 TCCTTGTATGGTACGTTTGACAG 58.438 43.478 0.00 0.00 0.00 3.51
648 663 3.682858 CCTTGTATGGTACGTTTGACAGG 59.317 47.826 0.00 0.00 0.00 4.00
649 664 4.561938 CCTTGTATGGTACGTTTGACAGGA 60.562 45.833 0.00 0.00 0.00 3.86
650 665 3.916761 TGTATGGTACGTTTGACAGGAC 58.083 45.455 0.00 0.00 0.00 3.85
651 666 3.575256 TGTATGGTACGTTTGACAGGACT 59.425 43.478 0.00 0.00 0.00 3.85
652 667 2.519377 TGGTACGTTTGACAGGACTG 57.481 50.000 0.00 0.00 0.00 3.51
653 668 2.033372 TGGTACGTTTGACAGGACTGA 58.967 47.619 6.29 0.00 0.00 3.41
654 669 2.631062 TGGTACGTTTGACAGGACTGAT 59.369 45.455 6.29 0.00 0.00 2.90
655 670 3.827876 TGGTACGTTTGACAGGACTGATA 59.172 43.478 6.29 0.00 0.00 2.15
656 671 4.171754 GGTACGTTTGACAGGACTGATAC 58.828 47.826 6.29 0.00 0.00 2.24
657 672 4.082354 GGTACGTTTGACAGGACTGATACT 60.082 45.833 6.29 0.00 0.00 2.12
658 673 5.124457 GGTACGTTTGACAGGACTGATACTA 59.876 44.000 6.29 0.00 0.00 1.82
659 674 5.916661 ACGTTTGACAGGACTGATACTAT 57.083 39.130 6.29 0.00 0.00 2.12
660 675 5.651530 ACGTTTGACAGGACTGATACTATG 58.348 41.667 6.29 0.00 0.00 2.23
661 676 5.185249 ACGTTTGACAGGACTGATACTATGT 59.815 40.000 6.29 0.00 0.00 2.29
662 677 6.376299 ACGTTTGACAGGACTGATACTATGTA 59.624 38.462 6.29 0.00 0.00 2.29
663 678 6.913132 CGTTTGACAGGACTGATACTATGTAG 59.087 42.308 6.29 0.00 0.00 2.74
664 679 7.201705 CGTTTGACAGGACTGATACTATGTAGA 60.202 40.741 6.29 0.00 0.00 2.59
665 680 8.634444 GTTTGACAGGACTGATACTATGTAGAT 58.366 37.037 6.29 0.00 0.00 1.98
666 681 9.862149 TTTGACAGGACTGATACTATGTAGATA 57.138 33.333 6.29 0.00 0.00 1.98
667 682 9.508642 TTGACAGGACTGATACTATGTAGATAG 57.491 37.037 6.29 5.37 38.06 2.08
668 683 8.881262 TGACAGGACTGATACTATGTAGATAGA 58.119 37.037 13.54 0.00 35.90 1.98
669 684 9.899661 GACAGGACTGATACTATGTAGATAGAT 57.100 37.037 13.54 3.32 35.90 1.98
675 690 9.616156 ACTGATACTATGTAGATAGATTACCGG 57.384 37.037 13.54 0.00 35.90 5.28
676 691 8.447924 TGATACTATGTAGATAGATTACCGGC 57.552 38.462 13.54 0.00 35.90 6.13
677 692 7.501559 TGATACTATGTAGATAGATTACCGGCC 59.498 40.741 13.54 0.00 35.90 6.13
678 693 4.954826 ACTATGTAGATAGATTACCGGCCC 59.045 45.833 13.54 0.00 35.90 5.80
679 694 3.247948 TGTAGATAGATTACCGGCCCA 57.752 47.619 0.00 0.00 0.00 5.36
680 695 3.578978 TGTAGATAGATTACCGGCCCAA 58.421 45.455 0.00 0.00 0.00 4.12
681 696 3.968649 TGTAGATAGATTACCGGCCCAAA 59.031 43.478 0.00 0.00 0.00 3.28
682 697 4.409574 TGTAGATAGATTACCGGCCCAAAA 59.590 41.667 0.00 0.00 0.00 2.44
683 698 4.513406 AGATAGATTACCGGCCCAAAAA 57.487 40.909 0.00 0.00 0.00 1.94
701 716 4.431416 AAAAACCTGATGGGGGAAAAAC 57.569 40.909 0.00 0.00 40.03 2.43
702 717 3.344535 AAACCTGATGGGGGAAAAACT 57.655 42.857 0.00 0.00 40.03 2.66
703 718 4.479156 AAACCTGATGGGGGAAAAACTA 57.521 40.909 0.00 0.00 40.03 2.24
704 719 4.692523 AACCTGATGGGGGAAAAACTAT 57.307 40.909 0.00 0.00 40.03 2.12
705 720 3.981212 ACCTGATGGGGGAAAAACTATG 58.019 45.455 0.00 0.00 40.03 2.23
706 721 3.336694 ACCTGATGGGGGAAAAACTATGT 59.663 43.478 0.00 0.00 40.03 2.29
707 722 3.701040 CCTGATGGGGGAAAAACTATGTG 59.299 47.826 0.00 0.00 0.00 3.21
708 723 3.701040 CTGATGGGGGAAAAACTATGTGG 59.299 47.826 0.00 0.00 0.00 4.17
709 724 3.076785 TGATGGGGGAAAAACTATGTGGT 59.923 43.478 0.00 0.00 0.00 4.16
710 725 3.621682 TGGGGGAAAAACTATGTGGTT 57.378 42.857 0.00 0.00 0.00 3.67
711 726 3.502356 TGGGGGAAAAACTATGTGGTTC 58.498 45.455 0.00 0.00 0.00 3.62
712 727 3.117093 TGGGGGAAAAACTATGTGGTTCA 60.117 43.478 0.00 0.00 0.00 3.18
713 728 3.257375 GGGGGAAAAACTATGTGGTTCAC 59.743 47.826 0.00 0.00 34.56 3.18
714 729 4.149598 GGGGAAAAACTATGTGGTTCACT 58.850 43.478 0.00 0.00 35.11 3.41
715 730 4.022329 GGGGAAAAACTATGTGGTTCACTG 60.022 45.833 0.00 0.00 35.11 3.66
716 731 4.825085 GGGAAAAACTATGTGGTTCACTGA 59.175 41.667 0.00 0.00 35.11 3.41
717 732 5.300792 GGGAAAAACTATGTGGTTCACTGAA 59.699 40.000 0.00 0.00 35.11 3.02
718 733 6.015434 GGGAAAAACTATGTGGTTCACTGAAT 60.015 38.462 0.00 0.00 35.11 2.57
719 734 6.863126 GGAAAAACTATGTGGTTCACTGAATG 59.137 38.462 0.00 0.00 35.11 2.67
720 735 7.255451 GGAAAAACTATGTGGTTCACTGAATGA 60.255 37.037 0.00 0.00 35.11 2.57
721 736 7.581213 AAAACTATGTGGTTCACTGAATGAA 57.419 32.000 0.00 0.00 45.39 2.57
733 748 7.933215 TTCACTGAATGAATGAACTGATGAT 57.067 32.000 0.00 0.00 42.62 2.45
734 749 7.316544 TCACTGAATGAATGAACTGATGATG 57.683 36.000 0.00 0.00 33.02 3.07
735 750 5.971792 CACTGAATGAATGAACTGATGATGC 59.028 40.000 0.00 0.00 0.00 3.91
736 751 5.164606 TGAATGAATGAACTGATGATGCG 57.835 39.130 0.00 0.00 0.00 4.73
737 752 4.637091 TGAATGAATGAACTGATGATGCGT 59.363 37.500 0.00 0.00 0.00 5.24
738 753 5.124297 TGAATGAATGAACTGATGATGCGTT 59.876 36.000 0.00 0.00 0.00 4.84
739 754 4.604843 TGAATGAACTGATGATGCGTTC 57.395 40.909 0.00 0.00 37.97 3.95
740 755 4.256110 TGAATGAACTGATGATGCGTTCT 58.744 39.130 0.00 0.00 38.23 3.01
741 756 4.093850 TGAATGAACTGATGATGCGTTCTG 59.906 41.667 0.00 0.00 38.23 3.02
742 757 1.733912 TGAACTGATGATGCGTTCTGC 59.266 47.619 0.00 0.00 46.70 4.26
743 758 2.005451 GAACTGATGATGCGTTCTGCT 58.995 47.619 0.00 0.00 46.63 4.24
744 759 2.105006 ACTGATGATGCGTTCTGCTT 57.895 45.000 0.00 0.00 46.63 3.91
745 760 2.430465 ACTGATGATGCGTTCTGCTTT 58.570 42.857 0.00 0.00 46.63 3.51
746 761 2.816087 ACTGATGATGCGTTCTGCTTTT 59.184 40.909 0.00 0.00 46.63 2.27
747 762 3.168963 CTGATGATGCGTTCTGCTTTTG 58.831 45.455 0.00 0.00 46.63 2.44
748 763 1.916000 GATGATGCGTTCTGCTTTTGC 59.084 47.619 0.00 0.00 46.63 3.68
767 782 1.691196 CACAAGTGCCCTCCTTTTGA 58.309 50.000 0.00 0.00 0.00 2.69
768 783 2.031120 CACAAGTGCCCTCCTTTTGAA 58.969 47.619 0.00 0.00 0.00 2.69
769 784 2.035066 CACAAGTGCCCTCCTTTTGAAG 59.965 50.000 0.00 0.00 0.00 3.02
784 799 6.998968 CTTTTGAAGGAAGCATAGTCTCAT 57.001 37.500 0.00 0.00 0.00 2.90
785 800 7.388460 CTTTTGAAGGAAGCATAGTCTCATT 57.612 36.000 0.00 0.00 0.00 2.57
786 801 6.748333 TTTGAAGGAAGCATAGTCTCATTG 57.252 37.500 0.00 0.00 0.00 2.82
787 802 5.682234 TGAAGGAAGCATAGTCTCATTGA 57.318 39.130 0.00 0.00 0.00 2.57
788 803 6.053632 TGAAGGAAGCATAGTCTCATTGAA 57.946 37.500 0.00 0.00 0.00 2.69
789 804 6.475504 TGAAGGAAGCATAGTCTCATTGAAA 58.524 36.000 0.00 0.00 0.00 2.69
790 805 6.596888 TGAAGGAAGCATAGTCTCATTGAAAG 59.403 38.462 0.00 0.00 0.00 2.62
791 806 6.059787 AGGAAGCATAGTCTCATTGAAAGT 57.940 37.500 0.00 0.00 0.00 2.66
792 807 6.479884 AGGAAGCATAGTCTCATTGAAAGTT 58.520 36.000 0.00 0.00 0.00 2.66
793 808 6.597280 AGGAAGCATAGTCTCATTGAAAGTTC 59.403 38.462 0.00 0.00 0.00 3.01
794 809 6.597280 GGAAGCATAGTCTCATTGAAAGTTCT 59.403 38.462 0.00 0.00 0.00 3.01
795 810 7.201600 GGAAGCATAGTCTCATTGAAAGTTCTC 60.202 40.741 0.00 0.00 0.00 2.87
796 811 5.809562 AGCATAGTCTCATTGAAAGTTCTCG 59.190 40.000 0.00 0.00 0.00 4.04
797 812 5.807520 GCATAGTCTCATTGAAAGTTCTCGA 59.192 40.000 0.00 0.00 0.00 4.04
798 813 6.311445 GCATAGTCTCATTGAAAGTTCTCGAA 59.689 38.462 0.00 0.00 0.00 3.71
799 814 7.010923 GCATAGTCTCATTGAAAGTTCTCGAAT 59.989 37.037 0.00 0.00 0.00 3.34
800 815 9.521503 CATAGTCTCATTGAAAGTTCTCGAATA 57.478 33.333 0.00 0.00 0.00 1.75
802 817 8.417780 AGTCTCATTGAAAGTTCTCGAATATG 57.582 34.615 0.00 0.00 0.00 1.78
803 818 8.037758 AGTCTCATTGAAAGTTCTCGAATATGT 58.962 33.333 0.00 0.00 0.00 2.29
804 819 8.113062 GTCTCATTGAAAGTTCTCGAATATGTG 58.887 37.037 0.00 0.00 0.00 3.21
805 820 7.278646 TCTCATTGAAAGTTCTCGAATATGTGG 59.721 37.037 0.00 0.00 0.00 4.17
806 821 6.316140 TCATTGAAAGTTCTCGAATATGTGGG 59.684 38.462 0.00 0.00 0.00 4.61
807 822 5.160607 TGAAAGTTCTCGAATATGTGGGT 57.839 39.130 0.00 0.00 0.00 4.51
808 823 4.935205 TGAAAGTTCTCGAATATGTGGGTG 59.065 41.667 0.00 0.00 0.00 4.61
809 824 3.543680 AGTTCTCGAATATGTGGGTGG 57.456 47.619 0.00 0.00 0.00 4.61
810 825 2.170607 AGTTCTCGAATATGTGGGTGGG 59.829 50.000 0.00 0.00 0.00 4.61
811 826 1.874129 TCTCGAATATGTGGGTGGGT 58.126 50.000 0.00 0.00 0.00 4.51
812 827 1.484653 TCTCGAATATGTGGGTGGGTG 59.515 52.381 0.00 0.00 0.00 4.61
813 828 1.209504 CTCGAATATGTGGGTGGGTGT 59.790 52.381 0.00 0.00 0.00 4.16
814 829 1.065782 TCGAATATGTGGGTGGGTGTG 60.066 52.381 0.00 0.00 0.00 3.82
815 830 1.339631 CGAATATGTGGGTGGGTGTGT 60.340 52.381 0.00 0.00 0.00 3.72
816 831 2.091541 GAATATGTGGGTGGGTGTGTG 58.908 52.381 0.00 0.00 0.00 3.82
817 832 0.323360 ATATGTGGGTGGGTGTGTGC 60.323 55.000 0.00 0.00 0.00 4.57
818 833 2.419011 TATGTGGGTGGGTGTGTGCC 62.419 60.000 0.00 0.00 0.00 5.01
819 834 4.204028 GTGGGTGGGTGTGTGCCT 62.204 66.667 0.00 0.00 0.00 4.75
820 835 3.425014 TGGGTGGGTGTGTGCCTT 61.425 61.111 0.00 0.00 0.00 4.35
821 836 2.912025 GGGTGGGTGTGTGCCTTG 60.912 66.667 0.00 0.00 0.00 3.61
822 837 2.123897 GGTGGGTGTGTGCCTTGT 60.124 61.111 0.00 0.00 0.00 3.16
823 838 1.756561 GGTGGGTGTGTGCCTTGTT 60.757 57.895 0.00 0.00 0.00 2.83
824 839 1.437160 GTGGGTGTGTGCCTTGTTG 59.563 57.895 0.00 0.00 0.00 3.33
825 840 1.756172 TGGGTGTGTGCCTTGTTGG 60.756 57.895 0.00 0.00 39.35 3.77
826 841 1.756561 GGGTGTGTGCCTTGTTGGT 60.757 57.895 0.00 0.00 38.35 3.67
827 842 1.326951 GGGTGTGTGCCTTGTTGGTT 61.327 55.000 0.00 0.00 38.35 3.67
828 843 0.179113 GGTGTGTGCCTTGTTGGTTG 60.179 55.000 0.00 0.00 38.35 3.77
829 844 0.530288 GTGTGTGCCTTGTTGGTTGT 59.470 50.000 0.00 0.00 38.35 3.32
830 845 0.814457 TGTGTGCCTTGTTGGTTGTC 59.186 50.000 0.00 0.00 38.35 3.18
831 846 1.102978 GTGTGCCTTGTTGGTTGTCT 58.897 50.000 0.00 0.00 38.35 3.41
832 847 1.102154 TGTGCCTTGTTGGTTGTCTG 58.898 50.000 0.00 0.00 38.35 3.51
833 848 0.249031 GTGCCTTGTTGGTTGTCTGC 60.249 55.000 0.00 0.00 38.35 4.26
834 849 0.682532 TGCCTTGTTGGTTGTCTGCA 60.683 50.000 0.00 0.00 38.35 4.41
835 850 0.675633 GCCTTGTTGGTTGTCTGCAT 59.324 50.000 0.00 0.00 38.35 3.96
836 851 1.603678 GCCTTGTTGGTTGTCTGCATG 60.604 52.381 0.00 0.00 38.35 4.06
837 852 1.682854 CCTTGTTGGTTGTCTGCATGT 59.317 47.619 0.00 0.00 0.00 3.21
838 853 2.101249 CCTTGTTGGTTGTCTGCATGTT 59.899 45.455 0.00 0.00 0.00 2.71
839 854 3.430651 CCTTGTTGGTTGTCTGCATGTTT 60.431 43.478 0.00 0.00 0.00 2.83
840 855 3.435105 TGTTGGTTGTCTGCATGTTTC 57.565 42.857 0.00 0.00 0.00 2.78
841 856 3.023119 TGTTGGTTGTCTGCATGTTTCT 58.977 40.909 0.00 0.00 0.00 2.52
842 857 3.446873 TGTTGGTTGTCTGCATGTTTCTT 59.553 39.130 0.00 0.00 0.00 2.52
843 858 3.713858 TGGTTGTCTGCATGTTTCTTG 57.286 42.857 0.00 0.00 0.00 3.02
844 859 2.223782 TGGTTGTCTGCATGTTTCTTGC 60.224 45.455 0.00 1.57 40.55 4.01
850 865 1.798283 TGCATGTTTCTTGCAATGGC 58.202 45.000 0.00 0.00 46.48 4.40
864 879 3.069289 GCAATGGCAAGAAGAAAAAGGG 58.931 45.455 0.00 0.00 40.72 3.95
865 880 3.244181 GCAATGGCAAGAAGAAAAAGGGA 60.244 43.478 0.00 0.00 40.72 4.20
866 881 4.564199 GCAATGGCAAGAAGAAAAAGGGAT 60.564 41.667 0.00 0.00 40.72 3.85
867 882 4.813750 ATGGCAAGAAGAAAAAGGGATG 57.186 40.909 0.00 0.00 0.00 3.51
868 883 2.899256 TGGCAAGAAGAAAAAGGGATGG 59.101 45.455 0.00 0.00 0.00 3.51
869 884 2.234661 GGCAAGAAGAAAAAGGGATGGG 59.765 50.000 0.00 0.00 0.00 4.00
870 885 2.234661 GCAAGAAGAAAAAGGGATGGGG 59.765 50.000 0.00 0.00 0.00 4.96
871 886 3.510459 CAAGAAGAAAAAGGGATGGGGT 58.490 45.455 0.00 0.00 0.00 4.95
872 887 4.672899 CAAGAAGAAAAAGGGATGGGGTA 58.327 43.478 0.00 0.00 0.00 3.69
873 888 5.083821 CAAGAAGAAAAAGGGATGGGGTAA 58.916 41.667 0.00 0.00 0.00 2.85
874 889 5.348259 AGAAGAAAAAGGGATGGGGTAAA 57.652 39.130 0.00 0.00 0.00 2.01
875 890 5.722290 AGAAGAAAAAGGGATGGGGTAAAA 58.278 37.500 0.00 0.00 0.00 1.52
876 891 6.147473 AGAAGAAAAAGGGATGGGGTAAAAA 58.853 36.000 0.00 0.00 0.00 1.94
896 911 3.831715 AAAATACACTGAGCTTTCGCC 57.168 42.857 0.00 0.00 36.60 5.54
897 912 1.739067 AATACACTGAGCTTTCGCCC 58.261 50.000 0.00 0.00 36.60 6.13
919 934 0.586319 CGGCTTGTTGTCGTGTCATT 59.414 50.000 0.00 0.00 39.21 2.57
954 969 6.830324 AGCTAGAATTTCCATTGCACTAATCA 59.170 34.615 0.00 0.00 0.00 2.57
1202 1217 3.755434 GCTCCAGCACAAGCAACT 58.245 55.556 0.00 0.00 45.49 3.16
1219 1234 1.140312 ACTTGGTTTCCAGGAGCAGA 58.860 50.000 4.97 0.00 34.05 4.26
1301 1316 0.036388 TCTTCTGTCATTGACGGGCC 60.036 55.000 22.34 0.00 39.23 5.80
1305 1320 0.609131 CTGTCATTGACGGGCCCTTT 60.609 55.000 22.43 6.29 35.49 3.11
1398 1413 2.036098 CATGTTGCCTGCCCTGGA 59.964 61.111 0.00 0.00 0.00 3.86
1404 1419 1.792757 TTGCCTGCCCTGGAGACATT 61.793 55.000 0.00 0.00 41.51 2.71
1428 1443 2.926200 CTGGAGCGTCTACAAGAACATG 59.074 50.000 0.00 0.00 0.00 3.21
1431 1446 3.585862 GAGCGTCTACAAGAACATGGAA 58.414 45.455 0.00 0.00 0.00 3.53
1435 1450 4.631813 GCGTCTACAAGAACATGGAAGATT 59.368 41.667 0.00 0.00 0.00 2.40
1438 1453 5.412594 GTCTACAAGAACATGGAAGATTGCA 59.587 40.000 0.00 0.00 0.00 4.08
1439 1454 6.094603 GTCTACAAGAACATGGAAGATTGCAT 59.905 38.462 0.00 0.00 40.00 3.96
1464 1479 1.613317 TACCGCTGGATCCACACAGG 61.613 60.000 11.44 13.70 35.30 4.00
1543 1558 2.959707 GTCGACTACCATGGGAAGATCT 59.040 50.000 18.09 0.00 0.00 2.75
1594 1609 1.002087 GGAGGACCGCTCTTTCAAAGA 59.998 52.381 0.00 0.00 35.87 2.52
1641 1656 1.545582 CTTGTGGCATCCGGTGAAAAT 59.454 47.619 0.00 0.00 0.00 1.82
1741 1756 0.029567 GTGGTCGCCTCTAGATGACG 59.970 60.000 11.53 7.90 32.17 4.35
1770 1785 1.615392 GATGGTTGCAGCTGGTTTCTT 59.385 47.619 17.12 0.00 0.00 2.52
1916 1931 5.887598 CCCATATGAAGTCATTGTCTTCCAA 59.112 40.000 17.27 8.57 40.10 3.53
1973 1988 0.108804 GAAGATGGCGTCGTCAGGAA 60.109 55.000 16.29 0.00 35.68 3.36
1998 2013 0.608035 TCCCGGCTTCAATTGTGACC 60.608 55.000 5.13 4.50 31.90 4.02
2035 2050 3.802675 GCTTCGGTCTAGTGTCTTTGGTT 60.803 47.826 0.00 0.00 0.00 3.67
2038 2053 3.576982 TCGGTCTAGTGTCTTTGGTTGAT 59.423 43.478 0.00 0.00 0.00 2.57
2268 2331 1.205417 CCAACCACCATCAAATCCTGC 59.795 52.381 0.00 0.00 0.00 4.85
2276 2339 5.947566 CCACCATCAAATCCTGCATATCATA 59.052 40.000 0.00 0.00 0.00 2.15
2345 2848 3.890756 TGCCACTGAGTGATTGTGAAAAT 59.109 39.130 15.33 0.00 35.23 1.82
2351 2854 7.041167 CCACTGAGTGATTGTGAAAATTGACTA 60.041 37.037 15.33 0.00 35.23 2.59
2466 2969 7.326789 GTGGATTTCAATGATGTAACTGTTGTG 59.673 37.037 2.69 0.00 0.00 3.33
2471 2974 6.958255 TCAATGATGTAACTGTTGTGTCTTG 58.042 36.000 2.69 1.15 0.00 3.02
2580 3083 4.885907 CAGCATCCAGACCTTGTAAATGAT 59.114 41.667 0.00 0.00 0.00 2.45
2612 3115 1.066143 CGACTTGTCCAGCCCTTGTAT 60.066 52.381 0.00 0.00 0.00 2.29
2613 3116 2.359900 GACTTGTCCAGCCCTTGTATG 58.640 52.381 0.00 0.00 0.00 2.39
2733 3236 4.469945 TCAGCCCAGCTAACTAATTACTGT 59.530 41.667 0.00 0.00 36.40 3.55
2741 3244 9.378551 CCAGCTAACTAATTACTGTTGAACATA 57.621 33.333 0.00 0.00 0.00 2.29
2763 4182 2.125552 TGATGCTCGAAGGTGGCG 60.126 61.111 0.00 0.00 0.00 5.69
2806 4225 1.470098 AGTGCGCCAAATTAGCAAGAG 59.530 47.619 4.18 0.00 42.93 2.85
2810 4229 1.401905 CGCCAAATTAGCAAGAGGACC 59.598 52.381 1.77 0.00 0.00 4.46
2884 4303 1.022735 CCATCTCTGCTTGGTCATGC 58.977 55.000 2.40 2.40 0.00 4.06
2888 4307 1.085091 CTCTGCTTGGTCATGCTGTC 58.915 55.000 9.64 0.00 33.96 3.51
2892 4311 2.295349 CTGCTTGGTCATGCTGTCTTTT 59.705 45.455 9.64 0.00 33.23 2.27
2907 4326 6.072175 TGCTGTCTTTTGTTAACACAACTTCT 60.072 34.615 8.07 0.00 42.87 2.85
3002 5887 0.106015 AGCAGCCCAAGACAAAACCT 60.106 50.000 0.00 0.00 0.00 3.50
3004 5889 0.593128 CAGCCCAAGACAAAACCTCG 59.407 55.000 0.00 0.00 0.00 4.63
3005 5890 0.472471 AGCCCAAGACAAAACCTCGA 59.528 50.000 0.00 0.00 0.00 4.04
3006 5891 0.591659 GCCCAAGACAAAACCTCGAC 59.408 55.000 0.00 0.00 0.00 4.20
3007 5892 0.865769 CCCAAGACAAAACCTCGACG 59.134 55.000 0.00 0.00 0.00 5.12
3009 5894 0.234884 CAAGACAAAACCTCGACGGC 59.765 55.000 0.00 0.00 35.61 5.68
3010 5895 0.179067 AAGACAAAACCTCGACGGCA 60.179 50.000 0.00 0.00 35.61 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 7.762382 TGATCAGGCTACATATATAGACAACG 58.238 38.462 0.00 0.00 31.94 4.10
93 95 3.364549 TCAATTTTTGGCCTCGGATGAT 58.635 40.909 3.32 0.00 0.00 2.45
128 131 3.626028 ACGACAAAAATTGAGCCTGAC 57.374 42.857 0.00 0.00 0.00 3.51
132 135 4.215613 AGAACCTACGACAAAAATTGAGCC 59.784 41.667 0.00 0.00 0.00 4.70
145 148 4.139859 TGGTCACAAAAAGAACCTACGA 57.860 40.909 0.00 0.00 0.00 3.43
147 150 5.767816 ACATGGTCACAAAAAGAACCTAC 57.232 39.130 0.00 0.00 0.00 3.18
280 293 9.463443 AAGTTAGCAAATCAGTTTTCATTGTAC 57.537 29.630 0.00 0.00 0.00 2.90
319 332 9.547753 AGACGTGCTATATATGAAGTTTGAAAT 57.452 29.630 0.00 0.00 0.00 2.17
389 402 2.171003 GCCCAAGAAAAGCATGGTAGT 58.829 47.619 0.00 0.00 33.49 2.73
395 408 2.649129 GCCCGCCCAAGAAAAGCAT 61.649 57.895 0.00 0.00 0.00 3.79
398 411 3.747976 CCGCCCGCCCAAGAAAAG 61.748 66.667 0.00 0.00 0.00 2.27
413 426 5.048991 ACAAAAACTGTAAATAGGACAGCCG 60.049 40.000 2.76 0.00 46.85 5.52
436 449 0.548510 AGGATAGCCCCTGCAAGAAC 59.451 55.000 0.00 0.00 41.13 3.01
438 451 0.839946 GAAGGATAGCCCCTGCAAGA 59.160 55.000 0.00 0.00 41.13 3.02
439 452 0.842635 AGAAGGATAGCCCCTGCAAG 59.157 55.000 0.00 0.00 41.13 4.01
441 454 2.422939 ATAGAAGGATAGCCCCTGCA 57.577 50.000 0.00 0.00 41.13 4.41
442 455 3.797559 AAATAGAAGGATAGCCCCTGC 57.202 47.619 0.00 0.00 36.49 4.85
444 457 4.228438 GCCATAAATAGAAGGATAGCCCCT 59.772 45.833 0.00 0.00 38.42 4.79
445 458 4.527944 GCCATAAATAGAAGGATAGCCCC 58.472 47.826 0.00 0.00 34.66 5.80
446 459 4.527944 GGCCATAAATAGAAGGATAGCCC 58.472 47.826 0.00 0.00 33.31 5.19
447 460 4.192317 CGGCCATAAATAGAAGGATAGCC 58.808 47.826 2.24 0.00 0.00 3.93
454 469 4.261197 GCAAAGACCGGCCATAAATAGAAG 60.261 45.833 0.00 0.00 0.00 2.85
493 508 2.256117 ATACGGACTAGGCAATTGGC 57.744 50.000 23.61 23.61 43.74 4.52
508 523 2.469826 TCTAGCGCATGGACAAATACG 58.530 47.619 11.47 0.00 0.00 3.06
513 528 2.694065 GCATCTAGCGCATGGACAA 58.306 52.632 11.47 0.00 0.00 3.18
514 529 4.443857 GCATCTAGCGCATGGACA 57.556 55.556 11.47 0.00 0.00 4.02
523 538 3.176708 CACATGTTTGCAAGCATCTAGC 58.823 45.455 23.96 0.00 46.19 3.42
524 539 3.766151 CCACATGTTTGCAAGCATCTAG 58.234 45.455 23.96 16.10 0.00 2.43
525 540 2.094597 GCCACATGTTTGCAAGCATCTA 60.095 45.455 23.96 0.00 0.00 1.98
526 541 1.337447 GCCACATGTTTGCAAGCATCT 60.337 47.619 23.96 11.74 0.00 2.90
527 542 1.073177 GCCACATGTTTGCAAGCATC 58.927 50.000 23.96 10.76 0.00 3.91
528 543 0.682852 AGCCACATGTTTGCAAGCAT 59.317 45.000 21.53 21.53 0.00 3.79
529 544 0.032403 GAGCCACATGTTTGCAAGCA 59.968 50.000 18.67 18.67 0.00 3.91
530 545 0.668401 GGAGCCACATGTTTGCAAGC 60.668 55.000 17.02 6.31 0.00 4.01
531 546 0.963962 AGGAGCCACATGTTTGCAAG 59.036 50.000 17.02 0.00 0.00 4.01
532 547 0.675083 CAGGAGCCACATGTTTGCAA 59.325 50.000 17.02 0.00 0.00 4.08
533 548 1.180456 CCAGGAGCCACATGTTTGCA 61.180 55.000 17.02 0.00 0.00 4.08
534 549 1.588082 CCAGGAGCCACATGTTTGC 59.412 57.895 8.72 8.72 0.00 3.68
535 550 1.252904 CCCCAGGAGCCACATGTTTG 61.253 60.000 0.00 0.00 0.00 2.93
536 551 1.077265 CCCCAGGAGCCACATGTTT 59.923 57.895 0.00 0.00 0.00 2.83
537 552 2.765969 CCCCAGGAGCCACATGTT 59.234 61.111 0.00 0.00 0.00 2.71
538 553 4.052518 GCCCCAGGAGCCACATGT 62.053 66.667 0.00 0.00 0.00 3.21
539 554 1.925285 TAAGCCCCAGGAGCCACATG 61.925 60.000 0.00 0.00 0.00 3.21
540 555 1.619363 TAAGCCCCAGGAGCCACAT 60.619 57.895 0.00 0.00 0.00 3.21
541 556 2.204074 TAAGCCCCAGGAGCCACA 60.204 61.111 0.00 0.00 0.00 4.17
542 557 1.926426 ATGTAAGCCCCAGGAGCCAC 61.926 60.000 0.00 0.00 0.00 5.01
543 558 1.619363 ATGTAAGCCCCAGGAGCCA 60.619 57.895 0.00 0.00 0.00 4.75
544 559 1.152881 CATGTAAGCCCCAGGAGCC 60.153 63.158 0.00 0.00 0.00 4.70
545 560 0.837272 TACATGTAAGCCCCAGGAGC 59.163 55.000 2.20 0.00 0.00 4.70
546 561 1.202698 GCTACATGTAAGCCCCAGGAG 60.203 57.143 7.06 0.00 0.00 3.69
547 562 0.837272 GCTACATGTAAGCCCCAGGA 59.163 55.000 7.06 0.00 0.00 3.86
548 563 0.179018 GGCTACATGTAAGCCCCAGG 60.179 60.000 24.53 7.37 42.52 4.45
549 564 3.403936 GGCTACATGTAAGCCCCAG 57.596 57.895 24.53 9.38 42.52 4.45
560 575 4.132336 CTGAACACATAGCATGGCTACAT 58.868 43.478 0.00 0.00 44.24 2.29
561 576 3.534554 CTGAACACATAGCATGGCTACA 58.465 45.455 0.00 0.00 44.24 2.74
562 577 2.874701 CCTGAACACATAGCATGGCTAC 59.125 50.000 0.00 0.00 44.24 3.58
563 578 2.771372 TCCTGAACACATAGCATGGCTA 59.229 45.455 0.00 0.00 45.55 3.93
564 579 1.561076 TCCTGAACACATAGCATGGCT 59.439 47.619 0.00 0.00 43.41 4.75
565 580 2.042686 TCCTGAACACATAGCATGGC 57.957 50.000 0.00 0.00 33.60 4.40
566 581 2.357009 GCTTCCTGAACACATAGCATGG 59.643 50.000 0.00 0.00 33.60 3.66
567 582 2.357009 GGCTTCCTGAACACATAGCATG 59.643 50.000 0.00 0.00 0.00 4.06
568 583 2.025981 TGGCTTCCTGAACACATAGCAT 60.026 45.455 0.00 0.00 0.00 3.79
569 584 1.350684 TGGCTTCCTGAACACATAGCA 59.649 47.619 0.00 0.00 0.00 3.49
570 585 2.113860 TGGCTTCCTGAACACATAGC 57.886 50.000 0.00 0.00 0.00 2.97
571 586 4.520492 AGTTTTGGCTTCCTGAACACATAG 59.480 41.667 0.00 0.00 0.00 2.23
572 587 4.469657 AGTTTTGGCTTCCTGAACACATA 58.530 39.130 0.00 0.00 0.00 2.29
573 588 3.299503 AGTTTTGGCTTCCTGAACACAT 58.700 40.909 0.00 0.00 0.00 3.21
574 589 2.733956 AGTTTTGGCTTCCTGAACACA 58.266 42.857 0.00 0.00 0.00 3.72
575 590 3.119137 ACAAGTTTTGGCTTCCTGAACAC 60.119 43.478 0.00 0.00 34.12 3.32
576 591 3.096092 ACAAGTTTTGGCTTCCTGAACA 58.904 40.909 0.00 0.00 34.12 3.18
577 592 3.801114 ACAAGTTTTGGCTTCCTGAAC 57.199 42.857 0.00 0.00 34.12 3.18
578 593 6.478512 AATAACAAGTTTTGGCTTCCTGAA 57.521 33.333 0.00 0.00 34.12 3.02
579 594 6.478512 AAATAACAAGTTTTGGCTTCCTGA 57.521 33.333 0.00 0.00 34.12 3.86
580 595 6.202762 GGAAAATAACAAGTTTTGGCTTCCTG 59.797 38.462 0.00 0.00 34.12 3.86
581 596 6.099701 AGGAAAATAACAAGTTTTGGCTTCCT 59.900 34.615 0.00 0.00 34.12 3.36
582 597 6.288294 AGGAAAATAACAAGTTTTGGCTTCC 58.712 36.000 0.00 0.00 34.12 3.46
583 598 7.279981 ACAAGGAAAATAACAAGTTTTGGCTTC 59.720 33.333 0.00 0.00 34.12 3.86
584 599 7.109501 ACAAGGAAAATAACAAGTTTTGGCTT 58.890 30.769 0.00 0.00 34.12 4.35
585 600 6.649155 ACAAGGAAAATAACAAGTTTTGGCT 58.351 32.000 0.00 0.00 34.12 4.75
586 601 6.918892 ACAAGGAAAATAACAAGTTTTGGC 57.081 33.333 0.00 0.00 34.12 4.52
587 602 9.810545 TTCTACAAGGAAAATAACAAGTTTTGG 57.189 29.630 0.00 0.00 34.12 3.28
590 605 9.511144 CGTTTCTACAAGGAAAATAACAAGTTT 57.489 29.630 0.00 0.00 37.02 2.66
591 606 8.680001 ACGTTTCTACAAGGAAAATAACAAGTT 58.320 29.630 0.00 0.00 37.02 2.66
592 607 8.126700 CACGTTTCTACAAGGAAAATAACAAGT 58.873 33.333 0.00 0.00 37.02 3.16
593 608 8.339714 TCACGTTTCTACAAGGAAAATAACAAG 58.660 33.333 0.00 0.00 37.02 3.16
594 609 8.211116 TCACGTTTCTACAAGGAAAATAACAA 57.789 30.769 0.00 0.00 37.02 2.83
595 610 7.789273 TCACGTTTCTACAAGGAAAATAACA 57.211 32.000 0.00 0.00 37.02 2.41
596 611 7.686938 CGATCACGTTTCTACAAGGAAAATAAC 59.313 37.037 0.00 0.00 37.02 1.89
597 612 7.622672 GCGATCACGTTTCTACAAGGAAAATAA 60.623 37.037 0.00 0.00 41.98 1.40
598 613 6.183360 GCGATCACGTTTCTACAAGGAAAATA 60.183 38.462 0.00 0.00 41.98 1.40
599 614 5.390567 GCGATCACGTTTCTACAAGGAAAAT 60.391 40.000 0.00 0.00 41.98 1.82
600 615 4.084223 GCGATCACGTTTCTACAAGGAAAA 60.084 41.667 0.00 0.00 41.98 2.29
601 616 3.430895 GCGATCACGTTTCTACAAGGAAA 59.569 43.478 0.00 0.00 41.98 3.13
602 617 2.991190 GCGATCACGTTTCTACAAGGAA 59.009 45.455 0.00 0.00 41.98 3.36
603 618 2.230508 AGCGATCACGTTTCTACAAGGA 59.769 45.455 0.00 0.00 41.98 3.36
604 619 2.607187 AGCGATCACGTTTCTACAAGG 58.393 47.619 0.00 0.00 41.98 3.61
612 627 1.878953 ACAAGGAAGCGATCACGTTT 58.121 45.000 0.00 0.00 44.69 3.60
613 628 2.736144 TACAAGGAAGCGATCACGTT 57.264 45.000 0.00 0.00 41.98 3.99
614 629 2.540515 CATACAAGGAAGCGATCACGT 58.459 47.619 0.00 0.00 41.98 4.49
615 630 1.860950 CCATACAAGGAAGCGATCACG 59.139 52.381 0.00 0.00 42.93 4.35
616 631 2.906354 ACCATACAAGGAAGCGATCAC 58.094 47.619 0.00 0.00 0.00 3.06
617 632 3.490249 CGTACCATACAAGGAAGCGATCA 60.490 47.826 0.00 0.00 0.00 2.92
618 633 3.050619 CGTACCATACAAGGAAGCGATC 58.949 50.000 0.00 0.00 0.00 3.69
619 634 2.429610 ACGTACCATACAAGGAAGCGAT 59.570 45.455 0.00 0.00 0.00 4.58
620 635 1.820519 ACGTACCATACAAGGAAGCGA 59.179 47.619 0.00 0.00 0.00 4.93
621 636 2.288961 ACGTACCATACAAGGAAGCG 57.711 50.000 0.00 0.00 0.00 4.68
622 637 3.998341 TCAAACGTACCATACAAGGAAGC 59.002 43.478 0.00 0.00 0.00 3.86
623 638 4.992319 TGTCAAACGTACCATACAAGGAAG 59.008 41.667 0.00 0.00 0.00 3.46
624 639 4.958509 TGTCAAACGTACCATACAAGGAA 58.041 39.130 0.00 0.00 0.00 3.36
625 640 4.561938 CCTGTCAAACGTACCATACAAGGA 60.562 45.833 0.00 0.00 0.00 3.36
626 641 3.682858 CCTGTCAAACGTACCATACAAGG 59.317 47.826 0.00 0.00 0.00 3.61
627 642 4.387862 GTCCTGTCAAACGTACCATACAAG 59.612 45.833 0.00 0.00 0.00 3.16
628 643 4.039488 AGTCCTGTCAAACGTACCATACAA 59.961 41.667 0.00 0.00 0.00 2.41
629 644 3.575256 AGTCCTGTCAAACGTACCATACA 59.425 43.478 0.00 0.00 0.00 2.29
630 645 3.924686 CAGTCCTGTCAAACGTACCATAC 59.075 47.826 0.00 0.00 0.00 2.39
631 646 3.827876 TCAGTCCTGTCAAACGTACCATA 59.172 43.478 0.00 0.00 0.00 2.74
632 647 2.631062 TCAGTCCTGTCAAACGTACCAT 59.369 45.455 0.00 0.00 0.00 3.55
633 648 2.033372 TCAGTCCTGTCAAACGTACCA 58.967 47.619 0.00 0.00 0.00 3.25
634 649 2.806608 TCAGTCCTGTCAAACGTACC 57.193 50.000 0.00 0.00 0.00 3.34
635 650 5.056894 AGTATCAGTCCTGTCAAACGTAC 57.943 43.478 0.00 0.00 0.00 3.67
636 651 6.376299 ACATAGTATCAGTCCTGTCAAACGTA 59.624 38.462 0.00 0.00 0.00 3.57
637 652 5.185249 ACATAGTATCAGTCCTGTCAAACGT 59.815 40.000 0.00 0.00 0.00 3.99
638 653 5.651530 ACATAGTATCAGTCCTGTCAAACG 58.348 41.667 0.00 0.00 0.00 3.60
639 654 7.997482 TCTACATAGTATCAGTCCTGTCAAAC 58.003 38.462 0.00 0.00 0.00 2.93
640 655 8.768501 ATCTACATAGTATCAGTCCTGTCAAA 57.231 34.615 0.00 0.00 0.00 2.69
641 656 9.508642 CTATCTACATAGTATCAGTCCTGTCAA 57.491 37.037 0.00 0.00 0.00 3.18
642 657 8.881262 TCTATCTACATAGTATCAGTCCTGTCA 58.119 37.037 0.00 0.00 34.54 3.58
643 658 9.899661 ATCTATCTACATAGTATCAGTCCTGTC 57.100 37.037 0.00 0.00 34.54 3.51
649 664 9.616156 CCGGTAATCTATCTACATAGTATCAGT 57.384 37.037 0.00 0.00 34.54 3.41
650 665 8.561212 GCCGGTAATCTATCTACATAGTATCAG 58.439 40.741 1.90 0.00 34.54 2.90
651 666 7.501559 GGCCGGTAATCTATCTACATAGTATCA 59.498 40.741 1.90 0.00 34.54 2.15
652 667 7.040548 GGGCCGGTAATCTATCTACATAGTATC 60.041 44.444 1.90 0.00 34.54 2.24
653 668 6.776603 GGGCCGGTAATCTATCTACATAGTAT 59.223 42.308 1.90 0.00 34.54 2.12
654 669 6.125029 GGGCCGGTAATCTATCTACATAGTA 58.875 44.000 1.90 0.00 34.54 1.82
655 670 4.954826 GGGCCGGTAATCTATCTACATAGT 59.045 45.833 1.90 0.00 34.54 2.12
656 671 4.954202 TGGGCCGGTAATCTATCTACATAG 59.046 45.833 1.90 0.00 34.24 2.23
657 672 4.938028 TGGGCCGGTAATCTATCTACATA 58.062 43.478 1.90 0.00 0.00 2.29
658 673 3.786553 TGGGCCGGTAATCTATCTACAT 58.213 45.455 1.90 0.00 0.00 2.29
659 674 3.247948 TGGGCCGGTAATCTATCTACA 57.752 47.619 1.90 0.00 0.00 2.74
660 675 4.612264 TTTGGGCCGGTAATCTATCTAC 57.388 45.455 1.90 0.00 0.00 2.59
661 676 5.633655 TTTTTGGGCCGGTAATCTATCTA 57.366 39.130 1.90 0.00 0.00 1.98
662 677 4.513406 TTTTTGGGCCGGTAATCTATCT 57.487 40.909 1.90 0.00 0.00 1.98
680 695 4.044308 AGTTTTTCCCCCATCAGGTTTTT 58.956 39.130 0.00 0.00 0.00 1.94
681 696 3.664320 AGTTTTTCCCCCATCAGGTTTT 58.336 40.909 0.00 0.00 0.00 2.43
682 697 3.344535 AGTTTTTCCCCCATCAGGTTT 57.655 42.857 0.00 0.00 0.00 3.27
683 698 4.202781 ACATAGTTTTTCCCCCATCAGGTT 60.203 41.667 0.00 0.00 0.00 3.50
684 699 3.336694 ACATAGTTTTTCCCCCATCAGGT 59.663 43.478 0.00 0.00 0.00 4.00
685 700 3.701040 CACATAGTTTTTCCCCCATCAGG 59.299 47.826 0.00 0.00 0.00 3.86
686 701 3.701040 CCACATAGTTTTTCCCCCATCAG 59.299 47.826 0.00 0.00 0.00 2.90
687 702 3.076785 ACCACATAGTTTTTCCCCCATCA 59.923 43.478 0.00 0.00 0.00 3.07
688 703 3.708451 ACCACATAGTTTTTCCCCCATC 58.292 45.455 0.00 0.00 0.00 3.51
689 704 3.845109 ACCACATAGTTTTTCCCCCAT 57.155 42.857 0.00 0.00 0.00 4.00
690 705 3.117093 TGAACCACATAGTTTTTCCCCCA 60.117 43.478 0.00 0.00 0.00 4.96
691 706 3.257375 GTGAACCACATAGTTTTTCCCCC 59.743 47.826 0.00 0.00 34.08 5.40
692 707 4.022329 CAGTGAACCACATAGTTTTTCCCC 60.022 45.833 0.00 0.00 36.74 4.81
693 708 4.825085 TCAGTGAACCACATAGTTTTTCCC 59.175 41.667 0.00 0.00 36.74 3.97
694 709 6.385649 TTCAGTGAACCACATAGTTTTTCC 57.614 37.500 0.08 0.00 36.74 3.13
695 710 7.648142 TCATTCAGTGAACCACATAGTTTTTC 58.352 34.615 7.96 0.00 36.74 2.29
696 711 7.581213 TCATTCAGTGAACCACATAGTTTTT 57.419 32.000 7.96 0.00 36.74 1.94
697 712 7.581213 TTCATTCAGTGAACCACATAGTTTT 57.419 32.000 7.96 0.00 41.79 2.43
710 725 6.183360 GCATCATCAGTTCATTCATTCAGTGA 60.183 38.462 0.00 0.00 34.25 3.41
711 726 5.971792 GCATCATCAGTTCATTCATTCAGTG 59.028 40.000 0.00 0.00 0.00 3.66
712 727 5.220796 CGCATCATCAGTTCATTCATTCAGT 60.221 40.000 0.00 0.00 0.00 3.41
713 728 5.205565 CGCATCATCAGTTCATTCATTCAG 58.794 41.667 0.00 0.00 0.00 3.02
714 729 4.637091 ACGCATCATCAGTTCATTCATTCA 59.363 37.500 0.00 0.00 0.00 2.57
715 730 5.165911 ACGCATCATCAGTTCATTCATTC 57.834 39.130 0.00 0.00 0.00 2.67
716 731 5.356190 AGAACGCATCATCAGTTCATTCATT 59.644 36.000 9.71 0.00 44.67 2.57
717 732 4.880120 AGAACGCATCATCAGTTCATTCAT 59.120 37.500 9.71 0.00 44.67 2.57
718 733 4.093850 CAGAACGCATCATCAGTTCATTCA 59.906 41.667 9.71 0.00 44.67 2.57
719 734 4.585364 CAGAACGCATCATCAGTTCATTC 58.415 43.478 9.71 0.00 44.67 2.67
720 735 3.181503 GCAGAACGCATCATCAGTTCATT 60.182 43.478 9.71 0.00 44.67 2.57
721 736 2.353889 GCAGAACGCATCATCAGTTCAT 59.646 45.455 9.71 0.00 44.67 2.57
722 737 1.733912 GCAGAACGCATCATCAGTTCA 59.266 47.619 9.71 0.00 44.67 3.18
723 738 2.005451 AGCAGAACGCATCATCAGTTC 58.995 47.619 0.00 0.00 46.13 3.01
724 739 2.105006 AGCAGAACGCATCATCAGTT 57.895 45.000 0.00 0.00 46.13 3.16
725 740 2.105006 AAGCAGAACGCATCATCAGT 57.895 45.000 0.00 0.00 46.13 3.41
726 741 3.168963 CAAAAGCAGAACGCATCATCAG 58.831 45.455 0.00 0.00 46.13 2.90
727 742 2.669113 GCAAAAGCAGAACGCATCATCA 60.669 45.455 0.00 0.00 46.13 3.07
728 743 1.916000 GCAAAAGCAGAACGCATCATC 59.084 47.619 0.00 0.00 46.13 2.92
729 744 1.270274 TGCAAAAGCAGAACGCATCAT 59.730 42.857 0.00 0.00 46.13 2.45
730 745 0.667453 TGCAAAAGCAGAACGCATCA 59.333 45.000 0.00 0.00 46.13 3.07
731 746 1.055338 GTGCAAAAGCAGAACGCATC 58.945 50.000 0.00 0.00 46.13 3.91
732 747 0.385029 TGTGCAAAAGCAGAACGCAT 59.615 45.000 0.00 0.00 46.13 4.73
733 748 0.172127 TTGTGCAAAAGCAGAACGCA 59.828 45.000 0.00 0.00 46.13 5.24
734 749 0.848305 CTTGTGCAAAAGCAGAACGC 59.152 50.000 3.06 0.00 42.91 4.84
735 750 1.847999 CACTTGTGCAAAAGCAGAACG 59.152 47.619 16.88 0.00 0.00 3.95
736 751 1.589779 GCACTTGTGCAAAAGCAGAAC 59.410 47.619 16.88 0.00 34.41 3.01
737 752 1.471327 GGCACTTGTGCAAAAGCAGAA 60.471 47.619 24.34 0.18 36.33 3.02
738 753 0.102844 GGCACTTGTGCAAAAGCAGA 59.897 50.000 24.34 0.00 36.33 4.26
739 754 0.877213 GGGCACTTGTGCAAAAGCAG 60.877 55.000 24.34 10.61 36.33 4.24
740 755 1.143620 GGGCACTTGTGCAAAAGCA 59.856 52.632 24.34 0.00 36.33 3.91
741 756 0.598419 GAGGGCACTTGTGCAAAAGC 60.598 55.000 24.34 4.35 36.33 3.51
742 757 0.032540 GGAGGGCACTTGTGCAAAAG 59.967 55.000 24.34 15.38 36.33 2.27
743 758 0.396974 AGGAGGGCACTTGTGCAAAA 60.397 50.000 24.34 0.00 36.33 2.44
744 759 0.396974 AAGGAGGGCACTTGTGCAAA 60.397 50.000 24.34 0.00 36.33 3.68
745 760 0.396974 AAAGGAGGGCACTTGTGCAA 60.397 50.000 24.34 0.00 36.33 4.08
746 761 0.396974 AAAAGGAGGGCACTTGTGCA 60.397 50.000 24.34 0.00 36.33 4.57
747 762 0.032540 CAAAAGGAGGGCACTTGTGC 59.967 55.000 16.50 16.50 0.00 4.57
748 763 1.691196 TCAAAAGGAGGGCACTTGTG 58.309 50.000 0.00 0.00 35.05 3.33
749 764 2.310538 CTTCAAAAGGAGGGCACTTGT 58.689 47.619 0.00 0.00 0.00 3.16
761 776 6.998968 ATGAGACTATGCTTCCTTCAAAAG 57.001 37.500 0.00 0.00 0.00 2.27
762 777 6.942005 TCAATGAGACTATGCTTCCTTCAAAA 59.058 34.615 0.00 0.00 0.00 2.44
763 778 6.475504 TCAATGAGACTATGCTTCCTTCAAA 58.524 36.000 0.00 0.00 0.00 2.69
764 779 6.053632 TCAATGAGACTATGCTTCCTTCAA 57.946 37.500 0.00 0.00 0.00 2.69
765 780 5.682234 TCAATGAGACTATGCTTCCTTCA 57.318 39.130 0.00 0.00 0.00 3.02
766 781 6.597280 ACTTTCAATGAGACTATGCTTCCTTC 59.403 38.462 0.00 0.00 0.00 3.46
767 782 6.479884 ACTTTCAATGAGACTATGCTTCCTT 58.520 36.000 0.00 0.00 0.00 3.36
768 783 6.059787 ACTTTCAATGAGACTATGCTTCCT 57.940 37.500 0.00 0.00 0.00 3.36
769 784 6.597280 AGAACTTTCAATGAGACTATGCTTCC 59.403 38.462 0.00 0.00 0.00 3.46
770 785 7.463913 CGAGAACTTTCAATGAGACTATGCTTC 60.464 40.741 0.00 0.00 0.00 3.86
771 786 6.312426 CGAGAACTTTCAATGAGACTATGCTT 59.688 38.462 0.00 0.00 0.00 3.91
772 787 5.809562 CGAGAACTTTCAATGAGACTATGCT 59.190 40.000 0.00 0.00 0.00 3.79
773 788 5.807520 TCGAGAACTTTCAATGAGACTATGC 59.192 40.000 0.00 0.00 0.00 3.14
774 789 7.818493 TTCGAGAACTTTCAATGAGACTATG 57.182 36.000 0.00 0.00 0.00 2.23
776 791 9.521503 CATATTCGAGAACTTTCAATGAGACTA 57.478 33.333 0.00 0.00 0.00 2.59
777 792 8.037758 ACATATTCGAGAACTTTCAATGAGACT 58.962 33.333 0.00 0.00 0.00 3.24
778 793 8.113062 CACATATTCGAGAACTTTCAATGAGAC 58.887 37.037 0.00 0.00 0.00 3.36
779 794 7.278646 CCACATATTCGAGAACTTTCAATGAGA 59.721 37.037 0.00 0.00 0.00 3.27
780 795 7.404985 CCACATATTCGAGAACTTTCAATGAG 58.595 38.462 0.00 0.00 0.00 2.90
781 796 6.316140 CCCACATATTCGAGAACTTTCAATGA 59.684 38.462 0.00 0.00 0.00 2.57
782 797 6.094048 ACCCACATATTCGAGAACTTTCAATG 59.906 38.462 0.00 0.00 0.00 2.82
783 798 6.094048 CACCCACATATTCGAGAACTTTCAAT 59.906 38.462 0.00 0.00 0.00 2.57
784 799 5.411361 CACCCACATATTCGAGAACTTTCAA 59.589 40.000 0.00 0.00 0.00 2.69
785 800 4.935205 CACCCACATATTCGAGAACTTTCA 59.065 41.667 0.00 0.00 0.00 2.69
786 801 4.332819 CCACCCACATATTCGAGAACTTTC 59.667 45.833 0.00 0.00 0.00 2.62
787 802 4.261801 CCACCCACATATTCGAGAACTTT 58.738 43.478 0.00 0.00 0.00 2.66
788 803 3.370527 CCCACCCACATATTCGAGAACTT 60.371 47.826 0.00 0.00 0.00 2.66
789 804 2.170607 CCCACCCACATATTCGAGAACT 59.829 50.000 0.00 0.00 0.00 3.01
790 805 2.093128 ACCCACCCACATATTCGAGAAC 60.093 50.000 0.00 0.00 0.00 3.01
791 806 2.093181 CACCCACCCACATATTCGAGAA 60.093 50.000 0.00 0.00 0.00 2.87
792 807 1.484653 CACCCACCCACATATTCGAGA 59.515 52.381 0.00 0.00 0.00 4.04
793 808 1.209504 ACACCCACCCACATATTCGAG 59.790 52.381 0.00 0.00 0.00 4.04
794 809 1.065782 CACACCCACCCACATATTCGA 60.066 52.381 0.00 0.00 0.00 3.71
795 810 1.339631 ACACACCCACCCACATATTCG 60.340 52.381 0.00 0.00 0.00 3.34
796 811 2.091541 CACACACCCACCCACATATTC 58.908 52.381 0.00 0.00 0.00 1.75
797 812 1.890573 GCACACACCCACCCACATATT 60.891 52.381 0.00 0.00 0.00 1.28
798 813 0.323360 GCACACACCCACCCACATAT 60.323 55.000 0.00 0.00 0.00 1.78
799 814 1.074072 GCACACACCCACCCACATA 59.926 57.895 0.00 0.00 0.00 2.29
800 815 2.203480 GCACACACCCACCCACAT 60.203 61.111 0.00 0.00 0.00 3.21
801 816 4.514585 GGCACACACCCACCCACA 62.515 66.667 0.00 0.00 0.00 4.17
802 817 3.731766 AAGGCACACACCCACCCAC 62.732 63.158 0.00 0.00 0.00 4.61
803 818 3.425014 AAGGCACACACCCACCCA 61.425 61.111 0.00 0.00 0.00 4.51
804 819 2.912025 CAAGGCACACACCCACCC 60.912 66.667 0.00 0.00 0.00 4.61
805 820 1.756561 AACAAGGCACACACCCACC 60.757 57.895 0.00 0.00 0.00 4.61
806 821 1.437160 CAACAAGGCACACACCCAC 59.563 57.895 0.00 0.00 0.00 4.61
807 822 1.756172 CCAACAAGGCACACACCCA 60.756 57.895 0.00 0.00 0.00 4.51
808 823 1.326951 AACCAACAAGGCACACACCC 61.327 55.000 0.00 0.00 43.14 4.61
809 824 0.179113 CAACCAACAAGGCACACACC 60.179 55.000 0.00 0.00 43.14 4.16
810 825 0.530288 ACAACCAACAAGGCACACAC 59.470 50.000 0.00 0.00 43.14 3.82
811 826 0.814457 GACAACCAACAAGGCACACA 59.186 50.000 0.00 0.00 43.14 3.72
812 827 1.102978 AGACAACCAACAAGGCACAC 58.897 50.000 0.00 0.00 43.14 3.82
813 828 1.102154 CAGACAACCAACAAGGCACA 58.898 50.000 0.00 0.00 43.14 4.57
814 829 0.249031 GCAGACAACCAACAAGGCAC 60.249 55.000 0.00 0.00 43.14 5.01
815 830 0.682532 TGCAGACAACCAACAAGGCA 60.683 50.000 0.00 0.00 43.14 4.75
816 831 0.675633 ATGCAGACAACCAACAAGGC 59.324 50.000 0.00 0.00 43.14 4.35
817 832 1.682854 ACATGCAGACAACCAACAAGG 59.317 47.619 0.00 0.00 45.67 3.61
818 833 3.441496 AACATGCAGACAACCAACAAG 57.559 42.857 0.00 0.00 0.00 3.16
819 834 3.446873 AGAAACATGCAGACAACCAACAA 59.553 39.130 0.00 0.00 0.00 2.83
820 835 3.023119 AGAAACATGCAGACAACCAACA 58.977 40.909 0.00 0.00 0.00 3.33
821 836 3.715628 AGAAACATGCAGACAACCAAC 57.284 42.857 0.00 0.00 0.00 3.77
822 837 3.737663 GCAAGAAACATGCAGACAACCAA 60.738 43.478 0.00 0.00 43.29 3.67
823 838 2.223782 GCAAGAAACATGCAGACAACCA 60.224 45.455 0.00 0.00 43.29 3.67
824 839 2.397549 GCAAGAAACATGCAGACAACC 58.602 47.619 0.00 0.00 43.29 3.77
832 847 1.798283 TGCCATTGCAAGAAACATGC 58.202 45.000 4.94 0.26 46.66 4.06
843 858 3.069289 CCCTTTTTCTTCTTGCCATTGC 58.931 45.455 0.00 0.00 38.26 3.56
844 859 4.605640 TCCCTTTTTCTTCTTGCCATTG 57.394 40.909 0.00 0.00 0.00 2.82
845 860 4.019950 CCATCCCTTTTTCTTCTTGCCATT 60.020 41.667 0.00 0.00 0.00 3.16
846 861 3.516700 CCATCCCTTTTTCTTCTTGCCAT 59.483 43.478 0.00 0.00 0.00 4.40
847 862 2.899256 CCATCCCTTTTTCTTCTTGCCA 59.101 45.455 0.00 0.00 0.00 4.92
848 863 2.234661 CCCATCCCTTTTTCTTCTTGCC 59.765 50.000 0.00 0.00 0.00 4.52
849 864 2.234661 CCCCATCCCTTTTTCTTCTTGC 59.765 50.000 0.00 0.00 0.00 4.01
850 865 3.510459 ACCCCATCCCTTTTTCTTCTTG 58.490 45.455 0.00 0.00 0.00 3.02
851 866 3.923273 ACCCCATCCCTTTTTCTTCTT 57.077 42.857 0.00 0.00 0.00 2.52
852 867 5.348259 TTTACCCCATCCCTTTTTCTTCT 57.652 39.130 0.00 0.00 0.00 2.85
853 868 6.428083 TTTTTACCCCATCCCTTTTTCTTC 57.572 37.500 0.00 0.00 0.00 2.87
896 911 2.590575 ACGACAACAAGCCGTGGG 60.591 61.111 0.00 0.00 35.02 4.61
897 912 2.631428 CACGACAACAAGCCGTGG 59.369 61.111 0.00 0.00 46.72 4.94
919 934 6.109156 TGGAAATTCTAGCTCACAGTACAA 57.891 37.500 0.00 0.00 0.00 2.41
954 969 2.711009 TCTCTGTGGGTGAGGAACAATT 59.289 45.455 0.00 0.00 32.78 2.32
1025 1040 2.275318 GTAGCTTCGCTTGCTGAGAAT 58.725 47.619 0.00 0.00 41.32 2.40
1029 1044 1.079127 GGGTAGCTTCGCTTGCTGA 60.079 57.895 0.00 0.00 41.32 4.26
1202 1217 2.174639 TCTTTCTGCTCCTGGAAACCAA 59.825 45.455 0.00 0.00 30.80 3.67
1219 1234 3.073650 ACAAGGAAGATGGTCTGCTCTTT 59.926 43.478 0.00 0.00 31.99 2.52
1282 1297 0.036388 GGCCCGTCAATGACAGAAGA 60.036 55.000 14.24 0.00 32.09 2.87
1301 1316 2.140717 AGCCGACGTAGAAAACAAAGG 58.859 47.619 0.00 0.00 0.00 3.11
1305 1320 0.675083 TGGAGCCGACGTAGAAAACA 59.325 50.000 0.00 0.00 0.00 2.83
1346 1361 1.293924 GGAGATGGTCTCAATGCACG 58.706 55.000 9.01 0.00 45.12 5.34
1398 1413 3.762288 TGTAGACGCTCCAGTAAATGTCT 59.238 43.478 0.00 0.00 39.73 3.41
1404 1419 3.570975 TGTTCTTGTAGACGCTCCAGTAA 59.429 43.478 0.00 0.00 0.00 2.24
1428 1443 1.678101 GGTAGGTGCATGCAATCTTCC 59.322 52.381 24.58 23.33 0.00 3.46
1431 1446 1.097547 GCGGTAGGTGCATGCAATCT 61.098 55.000 24.58 23.50 0.00 2.40
1435 1450 2.436469 CAGCGGTAGGTGCATGCA 60.436 61.111 18.46 18.46 39.14 3.96
1438 1453 1.447643 GATCCAGCGGTAGGTGCAT 59.552 57.895 0.00 0.00 43.99 3.96
1439 1454 2.731571 GGATCCAGCGGTAGGTGCA 61.732 63.158 6.95 0.00 43.99 4.57
1440 1455 2.109181 GGATCCAGCGGTAGGTGC 59.891 66.667 6.95 0.00 43.99 5.01
1543 1558 0.876399 TCCGTGACGTCGAAGATCAA 59.124 50.000 11.62 0.00 40.67 2.57
1594 1609 0.322546 GCATCCCTTTCGTTCCACCT 60.323 55.000 0.00 0.00 0.00 4.00
1641 1656 0.950555 GGCACGAGATGAGCACAACA 60.951 55.000 0.00 0.00 35.67 3.33
1741 1756 0.170561 CTGCAACCATCAAGCTCTGC 59.829 55.000 0.00 0.00 0.00 4.26
1770 1785 1.686325 GGATGGAGCGGCCTCTGTAA 61.686 60.000 0.00 0.00 38.21 2.41
1860 1875 2.491621 CTCGAGCTGTCGGCATCA 59.508 61.111 6.39 0.00 46.80 3.07
1863 1878 2.989253 TTCCTCGAGCTGTCGGCA 60.989 61.111 6.99 0.00 46.80 5.69
1916 1931 8.627403 TGAATATATTCGTAACCGACTTCTCTT 58.373 33.333 18.35 0.00 44.13 2.85
1959 1974 2.430382 GAACCTTCCTGACGACGCCA 62.430 60.000 0.00 0.00 0.00 5.69
1973 1988 0.698818 AATTGAAGCCGGGAGAACCT 59.301 50.000 2.18 0.00 36.97 3.50
1998 2013 1.982073 GAAGCCAATGCCGTTCCTCG 61.982 60.000 0.00 0.00 38.69 4.63
2081 2096 5.049954 TGTTGGTACTCAAGTTTCGTAATGC 60.050 40.000 0.00 0.00 35.80 3.56
2276 2339 3.319972 GGCATGCAACATATCCACTTGAT 59.680 43.478 21.36 0.00 37.49 2.57
2345 2848 4.702831 TGTCTTCAGTTGCACATAGTCAA 58.297 39.130 0.00 0.00 0.00 3.18
2351 2854 0.870393 CGCTGTCTTCAGTTGCACAT 59.130 50.000 0.00 0.00 43.05 3.21
2389 2892 7.077050 AGATAGCTCCTAATGCAGAAAGATT 57.923 36.000 0.00 0.00 0.00 2.40
2466 2969 3.655276 TTACAAGTCCGAGGACAAGAC 57.345 47.619 22.66 0.00 46.76 3.01
2471 2974 5.163884 GCAACTAAATTACAAGTCCGAGGAC 60.164 44.000 14.10 14.10 44.86 3.85
2560 3063 4.885907 AGCATCATTTACAAGGTCTGGATG 59.114 41.667 0.00 0.00 35.27 3.51
2580 3083 1.029408 ACAAGTCGCCAACAACAGCA 61.029 50.000 0.00 0.00 0.00 4.41
2612 3115 3.016031 ACACGATGCATTCCATTAAGCA 58.984 40.909 0.00 0.00 41.73 3.91
2613 3116 3.698029 ACACGATGCATTCCATTAAGC 57.302 42.857 0.00 0.00 33.29 3.09
2733 3236 4.429108 TCGAGCATCACGAATATGTTCAA 58.571 39.130 2.95 0.00 35.12 2.69
2741 3244 1.645034 CACCTTCGAGCATCACGAAT 58.355 50.000 0.00 0.00 46.01 3.34
2742 3245 0.389817 CCACCTTCGAGCATCACGAA 60.390 55.000 0.00 0.00 45.25 3.85
2744 3247 2.456119 GCCACCTTCGAGCATCACG 61.456 63.158 0.00 0.00 33.17 4.35
2758 4177 1.205820 GCGTTTAACTCACCGCCAC 59.794 57.895 0.00 0.00 40.25 5.01
2763 4182 3.250040 ACTCATGTTGCGTTTAACTCACC 59.750 43.478 0.00 0.00 0.00 4.02
2806 4225 0.602905 CACTTGTTCCGGTCAGGTCC 60.603 60.000 0.00 0.00 41.99 4.46
2810 4229 0.179056 ACACCACTTGTTCCGGTCAG 60.179 55.000 0.00 0.00 33.09 3.51
2875 4294 5.126222 TGTTAACAAAAGACAGCATGACCAA 59.874 36.000 5.64 0.00 39.69 3.67
2931 4350 5.637387 GCGGTGGTTTGATGTCAAATAAATT 59.363 36.000 10.98 0.00 46.12 1.82
2936 4355 1.272212 GGCGGTGGTTTGATGTCAAAT 59.728 47.619 10.98 0.00 46.12 2.32
2941 4360 1.303317 GAGGGCGGTGGTTTGATGT 60.303 57.895 0.00 0.00 0.00 3.06
2971 5856 2.694760 GGCTGCTTTCTTGGCCTCG 61.695 63.158 3.32 0.00 41.20 4.63
2973 5858 2.283460 GGGCTGCTTTCTTGGCCT 60.283 61.111 3.32 0.00 43.62 5.19
3002 5887 4.357947 GGCTGTCAGTGCCGTCGA 62.358 66.667 0.93 0.00 41.03 4.20
3009 5894 4.007644 TGGAGCCGGCTGTCAGTG 62.008 66.667 38.41 0.00 0.00 3.66
3010 5895 4.008933 GTGGAGCCGGCTGTCAGT 62.009 66.667 38.41 9.08 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.