Multiple sequence alignment - TraesCS7A01G416600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G416600 chr7A 100.000 5365 0 0 1 5365 608666914 608672278 0.000000e+00 9908.0
1 TraesCS7A01G416600 chr7A 100.000 91 0 0 5275 5365 608672344 608672434 9.240000e-38 169.0
2 TraesCS7A01G416600 chr7A 97.436 39 1 0 1 39 608666971 608667009 3.470000e-07 67.6
3 TraesCS7A01G416600 chr7B 91.944 3873 250 20 957 4808 566474612 566478443 0.000000e+00 5367.0
4 TraesCS7A01G416600 chr7B 90.415 386 19 9 558 933 566474111 566474488 4.830000e-135 492.0
5 TraesCS7A01G416600 chr7B 92.520 254 19 0 4889 5142 566478688 566478941 1.100000e-96 364.0
6 TraesCS7A01G416600 chr7B 97.297 37 0 1 4854 4889 566478441 566478477 1.610000e-05 62.1
7 TraesCS7A01G416600 chr7D 92.613 2843 180 14 1867 4704 528892814 528895631 0.000000e+00 4060.0
8 TraesCS7A01G416600 chr7D 89.011 1274 83 25 553 1801 528891578 528892819 0.000000e+00 1524.0
9 TraesCS7A01G416600 chr7D 91.667 252 19 1 4889 5140 528901339 528901588 1.110000e-91 348.0
10 TraesCS7A01G416600 chr7D 93.846 130 6 1 5011 5140 528902200 528902327 1.520000e-45 195.0
11 TraesCS7A01G416600 chr7D 89.241 158 9 2 5216 5365 528902541 528902698 1.970000e-44 191.0
12 TraesCS7A01G416600 chr7D 88.125 160 11 6 4665 4816 528895657 528895816 3.300000e-42 183.0
13 TraesCS7A01G416600 chr7D 88.732 71 5 2 483 551 51805166 51805235 3.440000e-12 84.2
14 TraesCS7A01G416600 chr4A 92.128 470 27 7 93 553 197883942 197883474 0.000000e+00 654.0
15 TraesCS7A01G416600 chr4A 95.887 389 14 2 101 489 513435944 513435558 3.530000e-176 628.0
16 TraesCS7A01G416600 chr4A 88.889 72 3 2 483 552 107233291 107233359 3.440000e-12 84.2
17 TraesCS7A01G416600 chr5A 96.382 387 13 1 89 474 606989960 606990346 2.110000e-178 636.0
18 TraesCS7A01G416600 chr5A 95.349 387 17 1 88 474 449841240 449840855 9.880000e-172 614.0
19 TraesCS7A01G416600 chr5A 95.491 377 16 1 88 464 55330257 55330632 7.690000e-168 601.0
20 TraesCS7A01G416600 chr5A 88.000 75 4 2 483 553 40374080 40374007 3.440000e-12 84.2
21 TraesCS7A01G416600 chr1A 94.789 403 19 2 88 490 102315643 102315243 1.270000e-175 627.0
22 TraesCS7A01G416600 chr1A 92.000 50 3 1 4810 4858 495446261 495446310 9.640000e-08 69.4
23 TraesCS7A01G416600 chr3A 95.619 388 15 2 88 474 131008211 131008597 5.900000e-174 621.0
24 TraesCS7A01G416600 chr3A 95.090 387 18 1 88 474 362605114 362605499 4.590000e-170 608.0
25 TraesCS7A01G416600 chr3A 87.838 74 5 4 483 553 509990398 509990470 3.440000e-12 84.2
26 TraesCS7A01G416600 chr2A 94.250 400 22 1 76 474 389697214 389697613 1.280000e-170 610.0
27 TraesCS7A01G416600 chr6D 90.789 76 5 1 478 551 314517193 314517118 3.420000e-17 100.0
28 TraesCS7A01G416600 chr6D 89.041 73 6 1 483 553 445555896 445555824 7.400000e-14 89.8
29 TraesCS7A01G416600 chr1B 89.394 66 5 2 482 546 677793307 677793371 1.240000e-11 82.4
30 TraesCS7A01G416600 chr3D 88.060 67 7 1 483 548 122771783 122771717 1.600000e-10 78.7
31 TraesCS7A01G416600 chr4B 90.566 53 1 3 4810 4858 621432499 621432447 3.470000e-07 67.6
32 TraesCS7A01G416600 chr1D 85.938 64 5 4 4804 4866 100460912 100460852 1.250000e-06 65.8
33 TraesCS7A01G416600 chr6B 89.796 49 4 1 4810 4857 667073205 667073157 1.610000e-05 62.1
34 TraesCS7A01G416600 chr6A 89.796 49 3 1 4810 4858 382510316 382510270 1.610000e-05 62.1
35 TraesCS7A01G416600 chr5D 92.857 42 3 0 4823 4864 396452373 396452332 1.610000e-05 62.1
36 TraesCS7A01G416600 chr4D 88.679 53 2 2 4810 4858 322663814 322663866 1.610000e-05 62.1
37 TraesCS7A01G416600 chr2B 88.462 52 2 4 4810 4858 4727145 4727195 5.800000e-05 60.2
38 TraesCS7A01G416600 chr2B 87.273 55 3 4 4831 4883 52717942 52717994 5.800000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G416600 chr7A 608666914 608672278 5364 False 9908.000000 9908 100.000000 1 5365 1 chr7A.!!$F1 5364
1 TraesCS7A01G416600 chr7B 566474111 566478941 4830 False 1571.275000 5367 93.044000 558 5142 4 chr7B.!!$F1 4584
2 TraesCS7A01G416600 chr7D 528891578 528895816 4238 False 1922.333333 4060 89.916333 553 4816 3 chr7D.!!$F2 4263
3 TraesCS7A01G416600 chr7D 528901339 528902698 1359 False 244.666667 348 91.584667 4889 5365 3 chr7D.!!$F3 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 512 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.0 15.95 0.0 44.36 1.90 F
1285 1418 0.100682 CGACGGATCTGGTACTGGTG 59.899 60.0 6.47 0.0 0.00 4.17 F
1370 1503 0.460987 CGGACAGGCCAAGAGATCAC 60.461 60.0 5.01 0.0 35.94 3.06 F
1836 1984 0.523072 CCACAGCATTTCACCTTCCG 59.477 55.0 0.00 0.0 0.00 4.30 F
3191 3351 0.609957 CTGGTGCAAATCCTGAGCCA 60.610 55.0 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1730 1.233019 CACTCAAACTGCTCACCCAG 58.767 55.000 0.0 0.0 38.78 4.45 R
3202 3362 0.102481 CTGTAGGGACAATCGACGGG 59.898 60.000 0.0 0.0 34.35 5.28 R
3335 3495 0.392998 CCCCAGAACCTTCCATGTCG 60.393 60.000 0.0 0.0 0.00 4.35 R
3638 3798 1.134175 AGTTGCCGAACAAAGTTGGTG 59.866 47.619 0.0 0.0 40.82 4.17 R
4843 5078 0.107459 ACTACGTACTCCCTCCGTCC 60.107 60.000 0.0 0.0 36.12 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.807921 TGTACTTCAGATAGATCATATACACCA 57.192 33.333 0.00 0.00 0.00 4.17
61 62 6.515272 ACACCAATATTCTTACTTGCCTTG 57.485 37.500 0.00 0.00 0.00 3.61
62 63 6.010219 ACACCAATATTCTTACTTGCCTTGT 58.990 36.000 0.00 0.00 0.00 3.16
63 64 7.172342 ACACCAATATTCTTACTTGCCTTGTA 58.828 34.615 0.00 0.00 0.00 2.41
64 65 7.120726 ACACCAATATTCTTACTTGCCTTGTAC 59.879 37.037 0.00 0.00 0.00 2.90
65 66 7.336931 CACCAATATTCTTACTTGCCTTGTACT 59.663 37.037 0.00 0.00 0.00 2.73
66 67 7.888546 ACCAATATTCTTACTTGCCTTGTACTT 59.111 33.333 0.00 0.00 0.00 2.24
67 68 8.739972 CCAATATTCTTACTTGCCTTGTACTTT 58.260 33.333 0.00 0.00 0.00 2.66
73 74 9.871238 TTCTTACTTGCCTTGTACTTTAGATAG 57.129 33.333 0.00 0.00 0.00 2.08
74 75 9.251440 TCTTACTTGCCTTGTACTTTAGATAGA 57.749 33.333 0.00 0.00 0.00 1.98
77 78 8.079211 ACTTGCCTTGTACTTTAGATAGATCA 57.921 34.615 0.00 0.00 0.00 2.92
78 79 8.709308 ACTTGCCTTGTACTTTAGATAGATCAT 58.291 33.333 0.00 0.00 0.00 2.45
130 131 5.799213 AGGACTCATTTTCTGTACTCTTGG 58.201 41.667 0.00 0.00 0.00 3.61
131 132 4.938226 GGACTCATTTTCTGTACTCTTGGG 59.062 45.833 0.00 0.00 0.00 4.12
132 133 5.280011 GGACTCATTTTCTGTACTCTTGGGA 60.280 44.000 0.00 0.00 0.00 4.37
133 134 5.799213 ACTCATTTTCTGTACTCTTGGGAG 58.201 41.667 0.00 0.00 44.62 4.30
158 159 9.036980 AGTATGTACTCCCATCTTCAATATACC 57.963 37.037 0.00 0.00 0.00 2.73
159 160 9.036980 GTATGTACTCCCATCTTCAATATACCT 57.963 37.037 0.00 0.00 0.00 3.08
160 161 7.540474 TGTACTCCCATCTTCAATATACCTC 57.460 40.000 0.00 0.00 0.00 3.85
161 162 5.730296 ACTCCCATCTTCAATATACCTCG 57.270 43.478 0.00 0.00 0.00 4.63
162 163 5.148502 ACTCCCATCTTCAATATACCTCGT 58.851 41.667 0.00 0.00 0.00 4.18
163 164 6.312529 ACTCCCATCTTCAATATACCTCGTA 58.687 40.000 0.00 0.00 0.00 3.43
164 165 6.954684 ACTCCCATCTTCAATATACCTCGTAT 59.045 38.462 0.00 0.00 33.05 3.06
165 166 8.114102 ACTCCCATCTTCAATATACCTCGTATA 58.886 37.037 0.00 0.00 35.77 1.47
166 167 9.137459 CTCCCATCTTCAATATACCTCGTATAT 57.863 37.037 0.00 0.00 41.66 0.86
167 168 8.914011 TCCCATCTTCAATATACCTCGTATATG 58.086 37.037 5.33 0.00 39.78 1.78
168 169 7.653713 CCCATCTTCAATATACCTCGTATATGC 59.346 40.741 5.33 0.00 39.78 3.14
169 170 8.197439 CCATCTTCAATATACCTCGTATATGCA 58.803 37.037 5.33 0.00 39.78 3.96
170 171 9.755804 CATCTTCAATATACCTCGTATATGCAT 57.244 33.333 3.79 3.79 39.78 3.96
172 173 9.586435 TCTTCAATATACCTCGTATATGCATTG 57.414 33.333 3.54 0.00 39.78 2.82
173 174 9.586435 CTTCAATATACCTCGTATATGCATTGA 57.414 33.333 3.54 0.00 39.78 2.57
180 181 9.982651 ATACCTCGTATATGCATTGATTATACC 57.017 33.333 3.54 0.00 0.00 2.73
181 182 7.272978 ACCTCGTATATGCATTGATTATACCC 58.727 38.462 3.54 0.00 0.00 3.69
182 183 6.706270 CCTCGTATATGCATTGATTATACCCC 59.294 42.308 3.54 0.00 0.00 4.95
183 184 7.419057 CCTCGTATATGCATTGATTATACCCCT 60.419 40.741 3.54 0.00 0.00 4.79
184 185 7.857456 TCGTATATGCATTGATTATACCCCTT 58.143 34.615 3.54 0.00 0.00 3.95
185 186 8.983789 TCGTATATGCATTGATTATACCCCTTA 58.016 33.333 3.54 0.00 0.00 2.69
186 187 9.778741 CGTATATGCATTGATTATACCCCTTAT 57.221 33.333 3.54 0.00 0.00 1.73
191 192 8.579850 TGCATTGATTATACCCCTTATCATTC 57.420 34.615 0.00 0.00 0.00 2.67
192 193 8.393259 TGCATTGATTATACCCCTTATCATTCT 58.607 33.333 0.00 0.00 0.00 2.40
193 194 8.897752 GCATTGATTATACCCCTTATCATTCTC 58.102 37.037 0.00 0.00 0.00 2.87
194 195 9.964354 CATTGATTATACCCCTTATCATTCTCA 57.036 33.333 0.00 0.00 0.00 3.27
204 205 9.170890 ACCCCTTATCATTCTCAATATACTTCA 57.829 33.333 0.00 0.00 0.00 3.02
237 238 9.990868 ATTCTAAGATACCCCAATACAAGTTTT 57.009 29.630 0.00 0.00 0.00 2.43
238 239 8.801882 TCTAAGATACCCCAATACAAGTTTTG 57.198 34.615 0.00 0.00 0.00 2.44
240 241 7.849322 AAGATACCCCAATACAAGTTTTGTT 57.151 32.000 0.00 0.00 42.22 2.83
241 242 7.227049 AGATACCCCAATACAAGTTTTGTTG 57.773 36.000 0.00 0.00 42.22 3.33
242 243 7.007723 AGATACCCCAATACAAGTTTTGTTGA 58.992 34.615 0.00 0.00 42.22 3.18
243 244 5.941555 ACCCCAATACAAGTTTTGTTGAA 57.058 34.783 0.00 0.00 42.22 2.69
244 245 6.301169 ACCCCAATACAAGTTTTGTTGAAA 57.699 33.333 0.00 0.00 42.22 2.69
245 246 6.712276 ACCCCAATACAAGTTTTGTTGAAAA 58.288 32.000 0.00 0.00 42.22 2.29
246 247 7.168905 ACCCCAATACAAGTTTTGTTGAAAAA 58.831 30.769 0.00 0.00 42.22 1.94
272 273 9.783256 AAATATCATTTACGACCTACTTTTTGC 57.217 29.630 0.00 0.00 0.00 3.68
273 274 6.811253 ATCATTTACGACCTACTTTTTGCA 57.189 33.333 0.00 0.00 0.00 4.08
274 275 6.236017 TCATTTACGACCTACTTTTTGCAG 57.764 37.500 0.00 0.00 0.00 4.41
275 276 5.761234 TCATTTACGACCTACTTTTTGCAGT 59.239 36.000 0.00 0.00 0.00 4.40
276 277 6.930164 TCATTTACGACCTACTTTTTGCAGTA 59.070 34.615 0.00 0.00 0.00 2.74
277 278 7.604927 TCATTTACGACCTACTTTTTGCAGTAT 59.395 33.333 0.00 0.00 0.00 2.12
278 279 8.875803 CATTTACGACCTACTTTTTGCAGTATA 58.124 33.333 0.00 0.00 0.00 1.47
279 280 7.816945 TTACGACCTACTTTTTGCAGTATAC 57.183 36.000 0.00 0.00 0.00 1.47
280 281 5.173664 ACGACCTACTTTTTGCAGTATACC 58.826 41.667 0.00 0.00 0.00 2.73
281 282 5.046807 ACGACCTACTTTTTGCAGTATACCT 60.047 40.000 0.00 0.00 0.00 3.08
282 283 5.873164 CGACCTACTTTTTGCAGTATACCTT 59.127 40.000 0.00 0.00 0.00 3.50
283 284 6.370718 CGACCTACTTTTTGCAGTATACCTTT 59.629 38.462 0.00 0.00 0.00 3.11
284 285 7.094933 CGACCTACTTTTTGCAGTATACCTTTT 60.095 37.037 0.00 0.00 0.00 2.27
285 286 8.473358 ACCTACTTTTTGCAGTATACCTTTTT 57.527 30.769 0.00 0.00 0.00 1.94
286 287 8.573885 ACCTACTTTTTGCAGTATACCTTTTTC 58.426 33.333 0.00 0.00 0.00 2.29
287 288 8.573035 CCTACTTTTTGCAGTATACCTTTTTCA 58.427 33.333 0.00 0.00 0.00 2.69
288 289 9.394477 CTACTTTTTGCAGTATACCTTTTTCAC 57.606 33.333 0.00 0.00 0.00 3.18
289 290 6.915843 ACTTTTTGCAGTATACCTTTTTCACG 59.084 34.615 0.00 0.00 0.00 4.35
290 291 6.380095 TTTTGCAGTATACCTTTTTCACGT 57.620 33.333 0.00 0.00 0.00 4.49
291 292 7.493743 TTTTGCAGTATACCTTTTTCACGTA 57.506 32.000 0.00 0.00 0.00 3.57
292 293 6.470557 TTGCAGTATACCTTTTTCACGTAC 57.529 37.500 0.00 0.00 0.00 3.67
293 294 5.539979 TGCAGTATACCTTTTTCACGTACA 58.460 37.500 0.00 0.00 0.00 2.90
294 295 5.990386 TGCAGTATACCTTTTTCACGTACAA 59.010 36.000 0.00 0.00 0.00 2.41
295 296 6.482641 TGCAGTATACCTTTTTCACGTACAAA 59.517 34.615 0.00 0.00 0.00 2.83
296 297 6.793680 GCAGTATACCTTTTTCACGTACAAAC 59.206 38.462 0.00 0.00 0.00 2.93
297 298 7.518689 GCAGTATACCTTTTTCACGTACAAACA 60.519 37.037 0.00 0.00 0.00 2.83
298 299 8.336806 CAGTATACCTTTTTCACGTACAAACAA 58.663 33.333 0.00 0.00 0.00 2.83
299 300 8.891720 AGTATACCTTTTTCACGTACAAACAAA 58.108 29.630 0.00 0.00 0.00 2.83
300 301 9.667989 GTATACCTTTTTCACGTACAAACAAAT 57.332 29.630 0.00 0.00 0.00 2.32
301 302 8.791355 ATACCTTTTTCACGTACAAACAAATC 57.209 30.769 0.00 0.00 0.00 2.17
302 303 6.622549 ACCTTTTTCACGTACAAACAAATCA 58.377 32.000 0.00 0.00 0.00 2.57
303 304 6.750039 ACCTTTTTCACGTACAAACAAATCAG 59.250 34.615 0.00 0.00 0.00 2.90
304 305 6.750039 CCTTTTTCACGTACAAACAAATCAGT 59.250 34.615 0.00 0.00 0.00 3.41
305 306 7.911205 CCTTTTTCACGTACAAACAAATCAGTA 59.089 33.333 0.00 0.00 0.00 2.74
306 307 9.445786 CTTTTTCACGTACAAACAAATCAGTAT 57.554 29.630 0.00 0.00 0.00 2.12
311 312 9.012448 TCACGTACAAACAAATCAGTATATACG 57.988 33.333 7.23 3.26 38.07 3.06
312 313 8.800972 CACGTACAAACAAATCAGTATATACGT 58.199 33.333 7.23 0.00 43.90 3.57
333 334 6.617879 ACGTAAACCTTTGAAAATATGAGGC 58.382 36.000 0.00 0.00 0.00 4.70
334 335 6.207810 ACGTAAACCTTTGAAAATATGAGGCA 59.792 34.615 0.00 0.00 0.00 4.75
335 336 6.526674 CGTAAACCTTTGAAAATATGAGGCAC 59.473 38.462 0.00 0.00 0.00 5.01
336 337 6.418057 AAACCTTTGAAAATATGAGGCACA 57.582 33.333 0.00 0.00 0.00 4.57
337 338 5.391312 ACCTTTGAAAATATGAGGCACAC 57.609 39.130 0.00 0.00 0.00 3.82
338 339 4.832266 ACCTTTGAAAATATGAGGCACACA 59.168 37.500 0.00 0.00 0.00 3.72
339 340 5.481473 ACCTTTGAAAATATGAGGCACACAT 59.519 36.000 0.00 0.00 43.23 3.21
340 341 5.808540 CCTTTGAAAATATGAGGCACACATG 59.191 40.000 0.00 0.00 40.46 3.21
341 342 6.350361 CCTTTGAAAATATGAGGCACACATGA 60.350 38.462 0.00 0.00 40.46 3.07
342 343 6.778834 TTGAAAATATGAGGCACACATGAT 57.221 33.333 0.00 0.00 40.46 2.45
343 344 6.778834 TGAAAATATGAGGCACACATGATT 57.221 33.333 0.00 0.00 40.46 2.57
344 345 7.172868 TGAAAATATGAGGCACACATGATTT 57.827 32.000 0.00 0.00 40.46 2.17
345 346 7.613585 TGAAAATATGAGGCACACATGATTTT 58.386 30.769 0.00 0.00 40.46 1.82
346 347 8.095792 TGAAAATATGAGGCACACATGATTTTT 58.904 29.630 0.00 0.00 40.46 1.94
373 374 9.713684 TTTCATGAAATCCATTTTAGGGTATCT 57.286 29.630 16.91 0.00 31.94 1.98
376 377 9.799106 CATGAAATCCATTTTAGGGTATCTAGT 57.201 33.333 0.00 0.00 31.94 2.57
447 448 5.843673 ATCTATGTGGTATATGAGGAGCG 57.156 43.478 0.00 0.00 0.00 5.03
448 449 4.918588 TCTATGTGGTATATGAGGAGCGA 58.081 43.478 0.00 0.00 0.00 4.93
449 450 4.944317 TCTATGTGGTATATGAGGAGCGAG 59.056 45.833 0.00 0.00 0.00 5.03
450 451 3.223674 TGTGGTATATGAGGAGCGAGA 57.776 47.619 0.00 0.00 0.00 4.04
451 452 3.562182 TGTGGTATATGAGGAGCGAGAA 58.438 45.455 0.00 0.00 0.00 2.87
452 453 4.152647 TGTGGTATATGAGGAGCGAGAAT 58.847 43.478 0.00 0.00 0.00 2.40
453 454 5.321927 TGTGGTATATGAGGAGCGAGAATA 58.678 41.667 0.00 0.00 0.00 1.75
454 455 5.183331 TGTGGTATATGAGGAGCGAGAATAC 59.817 44.000 0.00 0.00 0.00 1.89
455 456 5.183331 GTGGTATATGAGGAGCGAGAATACA 59.817 44.000 0.00 0.00 0.00 2.29
456 457 5.952347 TGGTATATGAGGAGCGAGAATACAT 59.048 40.000 0.00 0.00 0.00 2.29
457 458 7.067129 GTGGTATATGAGGAGCGAGAATACATA 59.933 40.741 0.00 0.00 0.00 2.29
458 459 7.067129 TGGTATATGAGGAGCGAGAATACATAC 59.933 40.741 0.00 0.00 0.00 2.39
459 460 7.283580 GGTATATGAGGAGCGAGAATACATACT 59.716 40.741 0.00 0.00 0.00 2.12
460 461 5.637006 ATGAGGAGCGAGAATACATACTC 57.363 43.478 0.00 0.00 0.00 2.59
461 462 3.821600 TGAGGAGCGAGAATACATACTCC 59.178 47.826 0.00 0.00 43.28 3.85
462 463 3.158676 AGGAGCGAGAATACATACTCCC 58.841 50.000 0.00 0.00 43.87 4.30
463 464 2.891580 GGAGCGAGAATACATACTCCCA 59.108 50.000 0.00 0.00 38.18 4.37
464 465 3.057174 GGAGCGAGAATACATACTCCCAG 60.057 52.174 0.00 0.00 38.18 4.45
465 466 3.821600 GAGCGAGAATACATACTCCCAGA 59.178 47.826 0.00 0.00 0.00 3.86
466 467 4.215908 AGCGAGAATACATACTCCCAGAA 58.784 43.478 0.00 0.00 0.00 3.02
467 468 4.649674 AGCGAGAATACATACTCCCAGAAA 59.350 41.667 0.00 0.00 0.00 2.52
468 469 5.305644 AGCGAGAATACATACTCCCAGAAAT 59.694 40.000 0.00 0.00 0.00 2.17
469 470 6.493802 AGCGAGAATACATACTCCCAGAAATA 59.506 38.462 0.00 0.00 0.00 1.40
470 471 6.586844 GCGAGAATACATACTCCCAGAAATAC 59.413 42.308 0.00 0.00 0.00 1.89
471 472 7.658261 CGAGAATACATACTCCCAGAAATACA 58.342 38.462 0.00 0.00 0.00 2.29
472 473 7.595502 CGAGAATACATACTCCCAGAAATACAC 59.404 40.741 0.00 0.00 0.00 2.90
473 474 8.319057 AGAATACATACTCCCAGAAATACACA 57.681 34.615 0.00 0.00 0.00 3.72
474 475 8.204836 AGAATACATACTCCCAGAAATACACAC 58.795 37.037 0.00 0.00 0.00 3.82
475 476 5.755409 ACATACTCCCAGAAATACACACA 57.245 39.130 0.00 0.00 0.00 3.72
476 477 5.488341 ACATACTCCCAGAAATACACACAC 58.512 41.667 0.00 0.00 0.00 3.82
477 478 5.012664 ACATACTCCCAGAAATACACACACA 59.987 40.000 0.00 0.00 0.00 3.72
478 479 4.640771 ACTCCCAGAAATACACACACAT 57.359 40.909 0.00 0.00 0.00 3.21
479 480 5.755409 ACTCCCAGAAATACACACACATA 57.245 39.130 0.00 0.00 0.00 2.29
480 481 6.313519 ACTCCCAGAAATACACACACATAT 57.686 37.500 0.00 0.00 0.00 1.78
481 482 7.432148 ACTCCCAGAAATACACACACATATA 57.568 36.000 0.00 0.00 0.00 0.86
482 483 8.034313 ACTCCCAGAAATACACACACATATAT 57.966 34.615 0.00 0.00 0.00 0.86
483 484 9.154632 ACTCCCAGAAATACACACACATATATA 57.845 33.333 0.00 0.00 0.00 0.86
501 502 9.021807 ACATATATATATATACACCCACGAGGC 57.978 37.037 13.52 0.00 40.58 4.70
502 503 9.244292 CATATATATATATACACCCACGAGGCT 57.756 37.037 13.52 0.00 40.58 4.58
503 504 7.762588 ATATATATATACACCCACGAGGCTC 57.237 40.000 3.87 3.87 40.58 4.70
504 505 2.082140 ATATACACCCACGAGGCTCA 57.918 50.000 15.95 0.00 40.58 4.26
505 506 1.855295 TATACACCCACGAGGCTCAA 58.145 50.000 15.95 0.00 40.58 3.02
506 507 0.537188 ATACACCCACGAGGCTCAAG 59.463 55.000 15.95 5.75 40.58 3.02
507 508 2.167398 TACACCCACGAGGCTCAAGC 62.167 60.000 15.95 0.00 40.58 4.01
508 509 3.241530 ACCCACGAGGCTCAAGCA 61.242 61.111 15.95 0.00 44.36 3.91
509 510 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
510 511 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
511 512 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
512 513 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
513 514 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
514 515 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
515 516 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
516 517 2.076100 CGAGGCTCAAGCAATACAACA 58.924 47.619 15.95 0.00 44.36 3.33
517 518 2.483877 CGAGGCTCAAGCAATACAACAA 59.516 45.455 15.95 0.00 44.36 2.83
518 519 3.058293 CGAGGCTCAAGCAATACAACAAA 60.058 43.478 15.95 0.00 44.36 2.83
519 520 4.556501 CGAGGCTCAAGCAATACAACAAAA 60.557 41.667 15.95 0.00 44.36 2.44
520 521 4.874970 AGGCTCAAGCAATACAACAAAAG 58.125 39.130 4.13 0.00 44.36 2.27
521 522 4.342092 AGGCTCAAGCAATACAACAAAAGT 59.658 37.500 4.13 0.00 44.36 2.66
522 523 4.681483 GGCTCAAGCAATACAACAAAAGTC 59.319 41.667 4.13 0.00 44.36 3.01
523 524 4.681483 GCTCAAGCAATACAACAAAAGTCC 59.319 41.667 0.00 0.00 41.59 3.85
524 525 5.735922 GCTCAAGCAATACAACAAAAGTCCA 60.736 40.000 0.00 0.00 41.59 4.02
525 526 5.587289 TCAAGCAATACAACAAAAGTCCAC 58.413 37.500 0.00 0.00 0.00 4.02
526 527 4.584327 AGCAATACAACAAAAGTCCACC 57.416 40.909 0.00 0.00 0.00 4.61
527 528 3.957497 AGCAATACAACAAAAGTCCACCA 59.043 39.130 0.00 0.00 0.00 4.17
528 529 4.404073 AGCAATACAACAAAAGTCCACCAA 59.596 37.500 0.00 0.00 0.00 3.67
529 530 5.070313 AGCAATACAACAAAAGTCCACCAAT 59.930 36.000 0.00 0.00 0.00 3.16
530 531 6.266558 AGCAATACAACAAAAGTCCACCAATA 59.733 34.615 0.00 0.00 0.00 1.90
531 532 7.039082 AGCAATACAACAAAAGTCCACCAATAT 60.039 33.333 0.00 0.00 0.00 1.28
532 533 7.602265 GCAATACAACAAAAGTCCACCAATATT 59.398 33.333 0.00 0.00 0.00 1.28
533 534 9.139174 CAATACAACAAAAGTCCACCAATATTC 57.861 33.333 0.00 0.00 0.00 1.75
534 535 6.096673 ACAACAAAAGTCCACCAATATTCC 57.903 37.500 0.00 0.00 0.00 3.01
535 536 5.838521 ACAACAAAAGTCCACCAATATTCCT 59.161 36.000 0.00 0.00 0.00 3.36
536 537 6.015434 ACAACAAAAGTCCACCAATATTCCTC 60.015 38.462 0.00 0.00 0.00 3.71
537 538 5.892348 ACAAAAGTCCACCAATATTCCTCT 58.108 37.500 0.00 0.00 0.00 3.69
538 539 5.946377 ACAAAAGTCCACCAATATTCCTCTC 59.054 40.000 0.00 0.00 0.00 3.20
539 540 6.183347 CAAAAGTCCACCAATATTCCTCTCT 58.817 40.000 0.00 0.00 0.00 3.10
540 541 5.622346 AAGTCCACCAATATTCCTCTCTC 57.378 43.478 0.00 0.00 0.00 3.20
541 542 3.970640 AGTCCACCAATATTCCTCTCTCC 59.029 47.826 0.00 0.00 0.00 3.71
542 543 3.071747 GTCCACCAATATTCCTCTCTCCC 59.928 52.174 0.00 0.00 0.00 4.30
543 544 3.051032 TCCACCAATATTCCTCTCTCCCT 60.051 47.826 0.00 0.00 0.00 4.20
544 545 3.718956 CCACCAATATTCCTCTCTCCCTT 59.281 47.826 0.00 0.00 0.00 3.95
545 546 4.202409 CCACCAATATTCCTCTCTCCCTTC 60.202 50.000 0.00 0.00 0.00 3.46
546 547 4.657969 CACCAATATTCCTCTCTCCCTTCT 59.342 45.833 0.00 0.00 0.00 2.85
547 548 5.841237 CACCAATATTCCTCTCTCCCTTCTA 59.159 44.000 0.00 0.00 0.00 2.10
548 549 6.327626 CACCAATATTCCTCTCTCCCTTCTAA 59.672 42.308 0.00 0.00 0.00 2.10
549 550 6.327887 ACCAATATTCCTCTCTCCCTTCTAAC 59.672 42.308 0.00 0.00 0.00 2.34
550 551 6.327626 CCAATATTCCTCTCTCCCTTCTAACA 59.672 42.308 0.00 0.00 0.00 2.41
551 552 7.017056 CCAATATTCCTCTCTCCCTTCTAACAT 59.983 40.741 0.00 0.00 0.00 2.71
552 553 5.885449 ATTCCTCTCTCCCTTCTAACATG 57.115 43.478 0.00 0.00 0.00 3.21
553 554 4.609866 TCCTCTCTCCCTTCTAACATGA 57.390 45.455 0.00 0.00 0.00 3.07
554 555 4.282496 TCCTCTCTCCCTTCTAACATGAC 58.718 47.826 0.00 0.00 0.00 3.06
555 556 3.067461 CCTCTCTCCCTTCTAACATGACG 59.933 52.174 0.00 0.00 0.00 4.35
556 557 3.697045 CTCTCTCCCTTCTAACATGACGT 59.303 47.826 0.00 0.00 0.00 4.34
568 569 1.343465 ACATGACGTTTCGGGAACTCT 59.657 47.619 0.00 0.00 36.06 3.24
581 582 1.067071 GGAACTCTCCTACCGTGTTGG 60.067 57.143 0.00 0.00 40.55 3.77
710 714 1.464395 TGGTTCCCCCACCAGCTAA 60.464 57.895 0.00 0.00 42.27 3.09
711 715 1.001269 GGTTCCCCCACCAGCTAAC 60.001 63.158 0.00 0.00 36.73 2.34
712 716 1.498176 GGTTCCCCCACCAGCTAACT 61.498 60.000 0.00 0.00 36.73 2.24
713 717 1.282382 GTTCCCCCACCAGCTAACTA 58.718 55.000 0.00 0.00 0.00 2.24
733 738 3.866883 AAACCAAGACATTAATGCCCG 57.133 42.857 15.48 1.99 0.00 6.13
753 773 2.169590 GACCAGACCTCCTCTCCCCA 62.170 65.000 0.00 0.00 0.00 4.96
754 774 1.316266 CCAGACCTCCTCTCCCCAT 59.684 63.158 0.00 0.00 0.00 4.00
756 776 0.762461 CAGACCTCCTCTCCCCATCC 60.762 65.000 0.00 0.00 0.00 3.51
757 777 1.460497 GACCTCCTCTCCCCATCCC 60.460 68.421 0.00 0.00 0.00 3.85
758 778 1.949449 ACCTCCTCTCCCCATCCCT 60.949 63.158 0.00 0.00 0.00 4.20
759 779 0.633835 ACCTCCTCTCCCCATCCCTA 60.634 60.000 0.00 0.00 0.00 3.53
760 780 0.178918 CCTCCTCTCCCCATCCCTAC 60.179 65.000 0.00 0.00 0.00 3.18
761 781 0.178918 CTCCTCTCCCCATCCCTACC 60.179 65.000 0.00 0.00 0.00 3.18
762 782 1.152008 CCTCTCCCCATCCCTACCC 60.152 68.421 0.00 0.00 0.00 3.69
763 783 1.152008 CTCTCCCCATCCCTACCCC 60.152 68.421 0.00 0.00 0.00 4.95
764 784 1.950000 TCTCCCCATCCCTACCCCA 60.950 63.158 0.00 0.00 0.00 4.96
765 785 1.462238 CTCCCCATCCCTACCCCAG 60.462 68.421 0.00 0.00 0.00 4.45
791 811 1.920610 AGCAGCAGCCAAGAAATCTT 58.079 45.000 0.00 0.00 43.56 2.40
810 830 3.059386 GCGCAATCGTTTGGGGGA 61.059 61.111 20.66 0.00 43.86 4.81
812 832 1.211709 CGCAATCGTTTGGGGGAAC 59.788 57.895 13.80 0.00 40.94 3.62
869 896 2.845363 TGAGCTGTTCATCTGCAGAA 57.155 45.000 22.50 1.31 42.26 3.02
877 904 4.851843 TGTTCATCTGCAGAATCATCCTT 58.148 39.130 22.50 0.00 0.00 3.36
878 905 4.638865 TGTTCATCTGCAGAATCATCCTTG 59.361 41.667 22.50 11.88 0.00 3.61
886 916 3.684981 GCAGAATCATCCTTGCTCCTCTT 60.685 47.826 0.00 0.00 0.00 2.85
951 1061 4.380761 CCAATCTCGTGCAAATTCATTCCA 60.381 41.667 0.00 0.00 0.00 3.53
1064 1197 3.393970 CCTCAGGAAGCTGGGCGA 61.394 66.667 0.00 0.00 0.00 5.54
1098 1231 4.114997 CACGCGGTTCCCAATGGC 62.115 66.667 12.47 0.00 0.00 4.40
1118 1251 1.367599 GACGACGTCGAGTCCCTCAT 61.368 60.000 41.52 18.10 46.92 2.90
1163 1296 1.750399 CCCTCAAGGCAACATCCCG 60.750 63.158 0.00 0.00 41.41 5.14
1281 1414 3.108343 CGCGACGGATCTGGTACT 58.892 61.111 0.00 0.00 0.00 2.73
1282 1415 1.298413 CGCGACGGATCTGGTACTG 60.298 63.158 0.00 0.00 0.00 2.74
1283 1416 1.065928 GCGACGGATCTGGTACTGG 59.934 63.158 6.47 0.00 0.00 4.00
1284 1417 1.664321 GCGACGGATCTGGTACTGGT 61.664 60.000 6.47 0.00 0.00 4.00
1285 1418 0.100682 CGACGGATCTGGTACTGGTG 59.899 60.000 6.47 0.00 0.00 4.17
1299 1432 4.579753 GGTACTGGTGATACTACCTCAGAC 59.420 50.000 0.00 0.00 41.43 3.51
1318 1451 2.600867 GACGGCTTCTCTGAAAAGATCG 59.399 50.000 0.00 0.79 0.00 3.69
1321 1454 1.325943 GCTTCTCTGAAAAGATCGGCG 59.674 52.381 0.00 0.00 34.15 6.46
1370 1503 0.460987 CGGACAGGCCAAGAGATCAC 60.461 60.000 5.01 0.00 35.94 3.06
1492 1640 2.455674 TGAACTCGTCAGAATGGTGG 57.544 50.000 0.00 0.00 36.16 4.61
1601 1749 1.233019 CTGGGTGAGCAGTTTGAGTG 58.767 55.000 0.00 0.00 0.00 3.51
1661 1809 4.651045 GGTGGCAATTTTGAGGGATATTCT 59.349 41.667 0.00 0.00 0.00 2.40
1686 1834 2.239654 CCAACTGGGGTGTGAGTATGAT 59.760 50.000 0.00 0.00 0.00 2.45
1700 1848 6.878923 TGTGAGTATGATCAAACCTTAACTGG 59.121 38.462 0.00 0.00 0.00 4.00
1731 1879 3.029564 GCTCGTCGACAGCGTCTCT 62.030 63.158 17.16 0.00 38.98 3.10
1741 1889 4.397103 TCGACAGCGTCTCTAATTTCCTTA 59.603 41.667 7.03 0.00 38.98 2.69
1761 1909 8.906238 TCCTTAAGGATAAAAGGTACTGTACT 57.094 34.615 20.72 0.73 42.47 2.73
1762 1910 9.330220 TCCTTAAGGATAAAAGGTACTGTACTT 57.670 33.333 20.72 7.34 42.47 2.24
1779 1927 7.344910 CTGTACTTCAGTTCAGAATTCAGAC 57.655 40.000 8.44 3.18 43.38 3.51
1836 1984 0.523072 CCACAGCATTTCACCTTCCG 59.477 55.000 0.00 0.00 0.00 4.30
1844 1992 2.404923 TTTCACCTTCCGTGTGTTCA 57.595 45.000 0.00 0.00 43.51 3.18
1845 1993 2.631160 TTCACCTTCCGTGTGTTCAT 57.369 45.000 0.00 0.00 43.51 2.57
1846 1994 2.631160 TCACCTTCCGTGTGTTCATT 57.369 45.000 0.00 0.00 43.51 2.57
1847 1995 3.755112 TCACCTTCCGTGTGTTCATTA 57.245 42.857 0.00 0.00 43.51 1.90
1848 1996 3.395639 TCACCTTCCGTGTGTTCATTAC 58.604 45.455 0.00 0.00 43.51 1.89
1849 1997 3.070446 TCACCTTCCGTGTGTTCATTACT 59.930 43.478 0.00 0.00 43.51 2.24
1850 1998 3.432252 CACCTTCCGTGTGTTCATTACTC 59.568 47.826 0.00 0.00 37.73 2.59
1909 2057 5.682862 GCATGTGGCTATTTTTATCTTCGTG 59.317 40.000 0.00 0.00 40.25 4.35
1936 2084 1.248101 TTCCAGCGACACGAGATCCA 61.248 55.000 0.00 0.00 0.00 3.41
1942 2090 1.550065 CGACACGAGATCCATGTGAC 58.450 55.000 14.39 8.62 37.08 3.67
1990 2142 2.840753 GGTGGAGAAAGGTGGGCCA 61.841 63.158 0.00 0.00 37.19 5.36
2055 2207 6.676950 TGCACTACCATGTTTTTGAATAGTG 58.323 36.000 0.00 0.00 38.18 2.74
2058 2210 6.582295 CACTACCATGTTTTTGAATAGTGCAC 59.418 38.462 9.40 9.40 33.38 4.57
2059 2211 5.528043 ACCATGTTTTTGAATAGTGCACA 57.472 34.783 21.04 5.47 0.00 4.57
2123 2283 7.697352 TTTCACTGAACTGCACATTAAATTG 57.303 32.000 0.00 0.00 0.00 2.32
2260 2420 7.819900 GTGAAATGTTCTACAGACTACCAGATT 59.180 37.037 0.00 0.00 0.00 2.40
2264 2424 8.779354 ATGTTCTACAGACTACCAGATTTTTC 57.221 34.615 0.00 0.00 0.00 2.29
2289 2449 5.304778 CCTTGTTTTGGGGAATTTTACCTG 58.695 41.667 0.00 0.00 0.00 4.00
2409 2569 2.736721 TGTCAACGATTGTAGCTTGCTC 59.263 45.455 0.00 0.00 0.00 4.26
2504 2664 5.731957 TTATTAAGGGTGCCTTTCCAAAC 57.268 39.130 0.00 0.00 41.69 2.93
2512 2672 2.802247 GTGCCTTTCCAAACAGCAATTC 59.198 45.455 0.00 0.00 34.79 2.17
2570 2730 1.747355 GTAGCCAAATCATGCAGTGCT 59.253 47.619 17.60 0.00 0.00 4.40
2579 2739 0.885879 CATGCAGTGCTTCATGTGGT 59.114 50.000 17.60 0.00 36.30 4.16
2615 2775 1.471119 TAAGCCCTCTCAGTACCGTG 58.529 55.000 0.00 0.00 0.00 4.94
2636 2796 3.379057 TGGACTCGGAAAGGTTGTTTTTC 59.621 43.478 0.00 0.00 34.55 2.29
2639 2799 5.451381 GGACTCGGAAAGGTTGTTTTTCAAT 60.451 40.000 0.86 0.00 38.38 2.57
2663 2823 2.095415 GGTGTTTAATTCCGGTGAGCAC 60.095 50.000 0.00 0.00 0.00 4.40
2689 2849 2.039418 GCCCCACCTCAAAAGAGTTTT 58.961 47.619 0.00 0.00 0.00 2.43
2795 2955 1.470098 CAATGGGAGCAAGTGTACAGC 59.530 52.381 0.00 0.00 0.00 4.40
2813 2973 1.969923 AGCTCTATCAGGCATGGACTC 59.030 52.381 0.00 0.00 0.00 3.36
2946 3106 5.234543 GGTTATGCTATCAAGAAGGAACGTC 59.765 44.000 0.00 0.00 37.02 4.34
3026 3186 2.630098 TGAGTCAGGAGAGAGGTGTTTG 59.370 50.000 0.00 0.00 0.00 2.93
3070 3230 4.982241 TGATCCAATCAGGGGAGATAAC 57.018 45.455 0.00 0.00 37.96 1.89
3091 3251 4.204799 ACTAAGTTTGGTGAGGTGGAAAC 58.795 43.478 0.00 0.00 0.00 2.78
3135 3295 4.960938 TCTTGATTTCCTCGTATCCATGG 58.039 43.478 4.97 4.97 0.00 3.66
3178 3338 1.904287 TTCATTGGTGTACCTGGTGC 58.096 50.000 10.23 9.10 36.82 5.01
3191 3351 0.609957 CTGGTGCAAATCCTGAGCCA 60.610 55.000 0.00 0.00 0.00 4.75
3202 3362 1.408702 TCCTGAGCCACAAAACAAAGC 59.591 47.619 0.00 0.00 0.00 3.51
3215 3375 0.953960 ACAAAGCCCGTCGATTGTCC 60.954 55.000 0.00 0.00 30.58 4.02
3243 3403 2.821969 GGTGACAGTGAAATTCCAGCAT 59.178 45.455 0.00 0.00 0.00 3.79
3328 3488 2.100749 TCTCGAAGTTCAGACACTTGCA 59.899 45.455 3.32 0.00 37.11 4.08
3335 3495 6.521133 CGAAGTTCAGACACTTGCATATTTTC 59.479 38.462 3.32 0.00 37.11 2.29
3338 3498 5.530519 TCAGACACTTGCATATTTTCGAC 57.469 39.130 0.00 0.00 0.00 4.20
3401 3561 2.642171 TAGGTGGTCTGGTCCATCTT 57.358 50.000 3.81 0.00 45.55 2.40
3426 3586 3.297134 ACCTGAGGCTCAAGTCAAAAA 57.703 42.857 19.29 0.00 0.00 1.94
3431 3591 3.321682 TGAGGCTCAAGTCAAAAATTGGG 59.678 43.478 16.28 0.00 0.00 4.12
3480 3640 3.322254 ACAGTACTTGGAGTCACTTGAGG 59.678 47.826 0.00 0.00 0.00 3.86
3503 3663 2.712077 CGAAAGCAATGCGACAACC 58.288 52.632 0.00 0.00 0.00 3.77
3541 3701 4.241590 TCAATCAACTCACACAATTGGC 57.758 40.909 10.83 0.00 0.00 4.52
3543 3703 4.281435 TCAATCAACTCACACAATTGGCAT 59.719 37.500 10.83 0.00 0.00 4.40
3567 3727 7.402811 TGTCTAGTTGTTAACGATGAAACTG 57.597 36.000 15.06 7.97 36.23 3.16
3609 3769 1.269936 GCCTCAAAGCATTGCAAGTGT 60.270 47.619 11.91 0.00 36.45 3.55
3611 3771 2.798283 CCTCAAAGCATTGCAAGTGTTG 59.202 45.455 11.91 6.91 36.45 3.33
3617 3777 1.610522 GCATTGCAAGTGTTGAGAGGT 59.389 47.619 4.94 0.00 0.00 3.85
3638 3798 2.270352 TCAATGTCAACACCCAGTCC 57.730 50.000 0.00 0.00 0.00 3.85
3657 3817 1.555477 CACCAACTTTGTTCGGCAAC 58.445 50.000 0.00 0.00 36.72 4.17
3659 3819 1.404035 ACCAACTTTGTTCGGCAACTC 59.596 47.619 0.00 0.00 36.72 3.01
3665 3825 3.181469 ACTTTGTTCGGCAACTCTGTCTA 60.181 43.478 0.00 0.00 36.72 2.59
3679 3839 7.551585 CAACTCTGTCTACTATCAAACCTGAT 58.448 38.462 0.00 0.00 44.71 2.90
3683 3843 6.322456 TCTGTCTACTATCAAACCTGATGGAG 59.678 42.308 5.60 0.00 41.79 3.86
3686 3846 6.265649 GTCTACTATCAAACCTGATGGAGCTA 59.734 42.308 5.60 0.00 41.79 3.32
3771 3931 4.459973 CGATATGTCGGCTAGGCG 57.540 61.111 31.00 31.00 44.00 5.52
3827 3987 2.030007 CGAGGGAGCAGATGAGATCTTC 60.030 54.545 0.00 0.00 37.58 2.87
3893 4053 1.191489 TCGAGGTGGGCATTGTCTCA 61.191 55.000 0.00 0.00 0.00 3.27
3971 4131 1.563577 GGGAAGTTGGGGAGGAGGAC 61.564 65.000 0.00 0.00 0.00 3.85
3972 4132 1.563577 GGAAGTTGGGGAGGAGGACC 61.564 65.000 0.00 0.00 0.00 4.46
4082 4242 0.486879 AAAGCCATGGGTTCCCTTCA 59.513 50.000 28.48 0.00 34.49 3.02
4118 4278 2.811317 GGCGGAGAAGAGTGTGCG 60.811 66.667 0.00 0.00 34.80 5.34
4127 4287 1.447317 AAGAGTGTGCGCTTGGGTTG 61.447 55.000 9.73 0.00 33.52 3.77
4161 4321 2.352715 GGTTCCATGCCAAAGCTACAAC 60.353 50.000 0.00 0.00 40.80 3.32
4181 4341 2.181205 CATCTTGAGCTCGAGTTCGAC 58.819 52.381 26.86 2.36 44.22 4.20
4183 4343 0.110147 CTTGAGCTCGAGTTCGACGT 60.110 55.000 21.27 0.00 44.22 4.34
4262 4422 1.941812 CCTCACAAGCACAACGGTC 59.058 57.895 0.00 0.00 0.00 4.79
4280 4440 1.394917 GTCCGCTCTACTTACGACGAA 59.605 52.381 0.00 0.00 0.00 3.85
4281 4441 2.031437 GTCCGCTCTACTTACGACGAAT 59.969 50.000 0.00 0.00 0.00 3.34
4296 4456 2.014594 GAATCCATTCGTCCCACGC 58.985 57.895 0.00 0.00 42.21 5.34
4323 4483 1.072489 CTGCCATGGAGAGATGCATCT 59.928 52.381 29.09 29.09 40.50 2.90
4345 4505 1.921869 GACCATCCCAACCGTCCCAT 61.922 60.000 0.00 0.00 0.00 4.00
4403 4563 3.056536 GGTTCCCTCTTCCAAAGATTTGC 60.057 47.826 0.00 0.00 36.82 3.68
4408 4568 3.575687 CCTCTTCCAAAGATTTGCCACTT 59.424 43.478 0.00 0.00 36.82 3.16
4416 4576 8.012957 TCCAAAGATTTGCCACTTAAAAGTAA 57.987 30.769 0.00 0.00 35.73 2.24
4417 4577 8.646900 TCCAAAGATTTGCCACTTAAAAGTAAT 58.353 29.630 0.00 0.00 35.73 1.89
4418 4578 8.711457 CCAAAGATTTGCCACTTAAAAGTAATG 58.289 33.333 0.00 0.00 35.73 1.90
4419 4579 9.260002 CAAAGATTTGCCACTTAAAAGTAATGT 57.740 29.630 0.00 0.00 37.08 2.71
4517 4677 1.435577 GCAAAATTCAAGCAGGCTGG 58.564 50.000 17.64 0.00 0.00 4.85
4529 4689 0.743701 CAGGCTGGTAGAAGCTGCAG 60.744 60.000 10.11 10.11 43.06 4.41
4572 4732 4.078537 CAACAAGATGGGTGAACATGGTA 58.921 43.478 0.00 0.00 0.00 3.25
4597 4757 1.338020 GGTGACACTGAAAAGCCAAGG 59.662 52.381 5.39 0.00 0.00 3.61
4616 4776 1.423845 GCACAGCAATAACCGGACG 59.576 57.895 9.46 0.00 0.00 4.79
4739 4973 1.486310 TGTACCTCATGGCTGATGGTC 59.514 52.381 0.00 0.00 35.69 4.02
4741 4975 1.219773 ACCTCATGGCTGATGGTCAT 58.780 50.000 0.00 0.00 41.49 3.06
4749 4983 3.699413 TGGCTGATGGTCATCATTTTCA 58.301 40.909 13.26 7.51 45.74 2.69
4752 4986 5.047847 GGCTGATGGTCATCATTTTCATTG 58.952 41.667 13.26 2.12 45.74 2.82
4816 5051 3.704800 ACTTTCTTAAGTGCTCCCTCC 57.295 47.619 1.63 0.00 42.91 4.30
4817 5052 2.979678 ACTTTCTTAAGTGCTCCCTCCA 59.020 45.455 1.63 0.00 42.91 3.86
4818 5053 3.589288 ACTTTCTTAAGTGCTCCCTCCAT 59.411 43.478 1.63 0.00 42.91 3.41
4819 5054 3.914426 TTCTTAAGTGCTCCCTCCATC 57.086 47.619 1.63 0.00 0.00 3.51
4820 5055 3.121929 TCTTAAGTGCTCCCTCCATCT 57.878 47.619 1.63 0.00 0.00 2.90
4821 5056 4.265856 TCTTAAGTGCTCCCTCCATCTA 57.734 45.455 1.63 0.00 0.00 1.98
4822 5057 4.620723 TCTTAAGTGCTCCCTCCATCTAA 58.379 43.478 1.63 0.00 0.00 2.10
4823 5058 5.030147 TCTTAAGTGCTCCCTCCATCTAAA 58.970 41.667 1.63 0.00 0.00 1.85
4824 5059 5.487488 TCTTAAGTGCTCCCTCCATCTAAAA 59.513 40.000 1.63 0.00 0.00 1.52
4825 5060 4.870021 AAGTGCTCCCTCCATCTAAAAT 57.130 40.909 0.00 0.00 0.00 1.82
4826 5061 5.975988 AAGTGCTCCCTCCATCTAAAATA 57.024 39.130 0.00 0.00 0.00 1.40
4827 5062 5.975988 AGTGCTCCCTCCATCTAAAATAA 57.024 39.130 0.00 0.00 0.00 1.40
4828 5063 5.934781 AGTGCTCCCTCCATCTAAAATAAG 58.065 41.667 0.00 0.00 0.00 1.73
4829 5064 5.430089 AGTGCTCCCTCCATCTAAAATAAGT 59.570 40.000 0.00 0.00 0.00 2.24
4830 5065 5.529060 GTGCTCCCTCCATCTAAAATAAGTG 59.471 44.000 0.00 0.00 0.00 3.16
4831 5066 5.428457 TGCTCCCTCCATCTAAAATAAGTGA 59.572 40.000 0.00 0.00 0.00 3.41
4832 5067 5.760743 GCTCCCTCCATCTAAAATAAGTGAC 59.239 44.000 0.00 0.00 0.00 3.67
4833 5068 6.632672 GCTCCCTCCATCTAAAATAAGTGACA 60.633 42.308 0.00 0.00 0.00 3.58
4834 5069 6.650120 TCCCTCCATCTAAAATAAGTGACAC 58.350 40.000 0.00 0.00 0.00 3.67
4835 5070 6.443849 TCCCTCCATCTAAAATAAGTGACACT 59.556 38.462 1.07 1.07 0.00 3.55
4836 5071 7.037586 TCCCTCCATCTAAAATAAGTGACACTT 60.038 37.037 23.61 23.61 41.97 3.16
4837 5072 8.265055 CCCTCCATCTAAAATAAGTGACACTTA 58.735 37.037 26.11 26.11 43.95 2.24
4847 5082 6.737254 ATAAGTGACACTTATTTTGGGACG 57.263 37.500 27.82 0.00 46.17 4.79
4848 5083 3.408634 AGTGACACTTATTTTGGGACGG 58.591 45.455 1.07 0.00 0.00 4.79
4849 5084 3.071892 AGTGACACTTATTTTGGGACGGA 59.928 43.478 1.07 0.00 0.00 4.69
4850 5085 3.435671 GTGACACTTATTTTGGGACGGAG 59.564 47.826 0.00 0.00 0.00 4.63
4851 5086 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4852 5087 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4853 5088 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4854 5089 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4855 5090 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4856 5091 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4881 5116 8.018677 ACGTAGTTACATCAACATCTTCTTTG 57.981 34.615 0.00 0.00 37.78 2.77
4882 5117 6.955963 CGTAGTTACATCAACATCTTCTTTGC 59.044 38.462 0.00 0.00 39.81 3.68
4883 5118 5.931532 AGTTACATCAACATCTTCTTTGCG 58.068 37.500 0.00 0.00 39.81 4.85
4887 5122 1.073125 TCAACATCTTCTTTGCGGGGA 59.927 47.619 0.00 0.00 0.00 4.81
4903 5350 1.884926 GGAAGCCGATTCGCTCTGG 60.885 63.158 0.00 0.00 38.44 3.86
4954 5401 3.153781 TCTCCGCGATGCCATCCA 61.154 61.111 8.23 0.00 0.00 3.41
4959 5406 3.272334 GCGATGCCATCCACCGAC 61.272 66.667 0.00 0.00 0.00 4.79
4969 5416 2.271800 CATCCACCGACTTGAACTAGC 58.728 52.381 0.00 0.00 0.00 3.42
4992 5439 4.628766 CAGTCCGATGGCATGTATGATAAG 59.371 45.833 3.81 0.00 0.00 1.73
4993 5440 3.935203 GTCCGATGGCATGTATGATAAGG 59.065 47.826 3.81 0.00 0.00 2.69
5099 6283 0.242017 GTGTGGATTTGAGCTGTGGC 59.758 55.000 0.00 0.00 39.06 5.01
5135 6319 2.258109 GATAACCGGGCTAAGGAGGAT 58.742 52.381 6.32 0.00 0.00 3.24
5156 6366 2.729028 TAGCCAAAGGATACCCAAGC 57.271 50.000 0.00 0.00 33.88 4.01
5160 6370 1.006832 CAAAGGATACCCAAGCGTCG 58.993 55.000 0.00 0.00 33.88 5.12
5166 6376 2.298158 ATACCCAAGCGTCGCAGAGG 62.298 60.000 21.09 17.76 46.27 3.69
5177 6387 4.504132 GCAGAGGGCGAGTTACAG 57.496 61.111 0.00 0.00 0.00 2.74
5178 6388 1.890894 GCAGAGGGCGAGTTACAGA 59.109 57.895 0.00 0.00 0.00 3.41
5179 6389 0.179124 GCAGAGGGCGAGTTACAGAG 60.179 60.000 0.00 0.00 0.00 3.35
5181 6391 0.612174 AGAGGGCGAGTTACAGAGCA 60.612 55.000 0.00 0.00 0.00 4.26
5182 6392 0.246635 GAGGGCGAGTTACAGAGCAA 59.753 55.000 0.00 0.00 0.00 3.91
5183 6393 0.685097 AGGGCGAGTTACAGAGCAAA 59.315 50.000 0.00 0.00 0.00 3.68
5184 6394 1.071699 AGGGCGAGTTACAGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
5185 6395 1.877443 GGGCGAGTTACAGAGCAAAAA 59.123 47.619 0.00 0.00 0.00 1.94
5186 6396 2.488153 GGGCGAGTTACAGAGCAAAAAT 59.512 45.455 0.00 0.00 0.00 1.82
5187 6397 3.492313 GGCGAGTTACAGAGCAAAAATG 58.508 45.455 0.00 0.00 0.00 2.32
5188 6398 3.492313 GCGAGTTACAGAGCAAAAATGG 58.508 45.455 0.00 0.00 0.00 3.16
5189 6399 3.670627 GCGAGTTACAGAGCAAAAATGGG 60.671 47.826 0.00 0.00 0.00 4.00
5190 6400 3.119849 CGAGTTACAGAGCAAAAATGGGG 60.120 47.826 0.00 0.00 0.00 4.96
5191 6401 2.562738 AGTTACAGAGCAAAAATGGGGC 59.437 45.455 0.00 0.00 0.00 5.80
5192 6402 1.173043 TACAGAGCAAAAATGGGGCG 58.827 50.000 0.00 0.00 0.00 6.13
5193 6403 0.827507 ACAGAGCAAAAATGGGGCGT 60.828 50.000 0.00 0.00 0.00 5.68
5194 6404 0.318120 CAGAGCAAAAATGGGGCGTT 59.682 50.000 0.00 0.00 0.00 4.84
5195 6405 1.047801 AGAGCAAAAATGGGGCGTTT 58.952 45.000 0.00 0.00 0.00 3.60
5196 6406 2.029470 CAGAGCAAAAATGGGGCGTTTA 60.029 45.455 0.00 0.00 0.00 2.01
5197 6407 2.831526 AGAGCAAAAATGGGGCGTTTAT 59.168 40.909 0.00 0.00 0.00 1.40
5198 6408 2.929398 GAGCAAAAATGGGGCGTTTATG 59.071 45.455 0.00 0.00 0.00 1.90
5199 6409 1.396648 GCAAAAATGGGGCGTTTATGC 59.603 47.619 0.00 0.00 0.00 3.14
5207 6417 3.937062 GCGTTTATGCCCTCGCCG 61.937 66.667 0.00 0.00 42.33 6.46
5209 6419 3.583086 GTTTATGCCCTCGCCGCC 61.583 66.667 0.00 0.00 0.00 6.13
5210 6420 4.102815 TTTATGCCCTCGCCGCCA 62.103 61.111 0.00 0.00 0.00 5.69
5211 6421 3.414136 TTTATGCCCTCGCCGCCAT 62.414 57.895 0.00 0.00 0.00 4.40
5212 6422 4.624364 TATGCCCTCGCCGCCATG 62.624 66.667 0.00 0.00 0.00 3.66
5242 6564 2.874701 CAGTGGGTGAAGTTTCTCTGTG 59.125 50.000 0.00 0.00 0.00 3.66
5243 6565 1.604278 GTGGGTGAAGTTTCTCTGTGC 59.396 52.381 0.00 0.00 0.00 4.57
5302 6632 2.556559 GGACAAGGGTAATGGCAAAGGA 60.557 50.000 0.00 0.00 0.00 3.36
5324 6654 1.623811 GCAGTGGGTGAACTTCCTCTA 59.376 52.381 0.00 0.00 0.00 2.43
5347 6677 4.292186 AGCCTGATTTGAACTAGCAGAA 57.708 40.909 0.00 0.00 0.00 3.02
5355 6685 5.801531 TTTGAACTAGCAGAACAGGTCTA 57.198 39.130 0.00 0.00 33.56 2.59
5361 6691 7.173218 TGAACTAGCAGAACAGGTCTAATTTTG 59.827 37.037 0.00 0.00 33.56 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.807921 TGGTGTATATGATCTATCTGAAGTACA 57.192 33.333 0.00 0.00 0.00 2.90
35 36 9.337396 CAAGGCAAGTAAGAATATTGGTGTATA 57.663 33.333 0.00 0.00 0.00 1.47
36 37 7.834181 ACAAGGCAAGTAAGAATATTGGTGTAT 59.166 33.333 0.00 0.00 0.00 2.29
37 38 7.172342 ACAAGGCAAGTAAGAATATTGGTGTA 58.828 34.615 0.00 0.00 0.00 2.90
38 39 6.010219 ACAAGGCAAGTAAGAATATTGGTGT 58.990 36.000 0.00 0.00 0.00 4.16
39 40 6.515272 ACAAGGCAAGTAAGAATATTGGTG 57.485 37.500 0.00 0.00 0.00 4.17
40 41 7.402862 AGTACAAGGCAAGTAAGAATATTGGT 58.597 34.615 0.00 0.00 0.00 3.67
41 42 7.865706 AGTACAAGGCAAGTAAGAATATTGG 57.134 36.000 0.00 0.00 0.00 3.16
47 48 9.871238 CTATCTAAAGTACAAGGCAAGTAAGAA 57.129 33.333 0.00 0.00 0.00 2.52
48 49 9.251440 TCTATCTAAAGTACAAGGCAAGTAAGA 57.749 33.333 0.00 0.00 0.00 2.10
51 52 9.197306 TGATCTATCTAAAGTACAAGGCAAGTA 57.803 33.333 0.00 0.00 0.00 2.24
52 53 8.079211 TGATCTATCTAAAGTACAAGGCAAGT 57.921 34.615 0.00 0.00 0.00 3.16
104 105 8.696374 CCAAGAGTACAGAAAATGAGTCCTATA 58.304 37.037 0.00 0.00 0.00 1.31
105 106 7.365117 CCCAAGAGTACAGAAAATGAGTCCTAT 60.365 40.741 0.00 0.00 0.00 2.57
106 107 6.070767 CCCAAGAGTACAGAAAATGAGTCCTA 60.071 42.308 0.00 0.00 0.00 2.94
107 108 5.280215 CCCAAGAGTACAGAAAATGAGTCCT 60.280 44.000 0.00 0.00 0.00 3.85
108 109 4.938226 CCCAAGAGTACAGAAAATGAGTCC 59.062 45.833 0.00 0.00 0.00 3.85
109 110 5.794894 TCCCAAGAGTACAGAAAATGAGTC 58.205 41.667 0.00 0.00 0.00 3.36
110 111 5.799213 CTCCCAAGAGTACAGAAAATGAGT 58.201 41.667 0.00 0.00 35.21 3.41
132 133 9.036980 GGTATATTGAAGATGGGAGTACATACT 57.963 37.037 0.00 0.00 39.71 2.12
133 134 9.036980 AGGTATATTGAAGATGGGAGTACATAC 57.963 37.037 0.00 0.00 0.00 2.39
134 135 9.256228 GAGGTATATTGAAGATGGGAGTACATA 57.744 37.037 0.00 0.00 0.00 2.29
135 136 7.093727 CGAGGTATATTGAAGATGGGAGTACAT 60.094 40.741 0.00 0.00 0.00 2.29
136 137 6.208797 CGAGGTATATTGAAGATGGGAGTACA 59.791 42.308 0.00 0.00 0.00 2.90
137 138 6.208994 ACGAGGTATATTGAAGATGGGAGTAC 59.791 42.308 0.00 0.00 0.00 2.73
138 139 6.312529 ACGAGGTATATTGAAGATGGGAGTA 58.687 40.000 0.00 0.00 0.00 2.59
139 140 5.148502 ACGAGGTATATTGAAGATGGGAGT 58.851 41.667 0.00 0.00 0.00 3.85
140 141 5.730296 ACGAGGTATATTGAAGATGGGAG 57.270 43.478 0.00 0.00 0.00 4.30
141 142 8.914011 CATATACGAGGTATATTGAAGATGGGA 58.086 37.037 5.72 0.00 38.99 4.37
142 143 7.653713 GCATATACGAGGTATATTGAAGATGGG 59.346 40.741 5.72 0.00 38.99 4.00
143 144 8.197439 TGCATATACGAGGTATATTGAAGATGG 58.803 37.037 5.72 0.00 38.99 3.51
144 145 9.755804 ATGCATATACGAGGTATATTGAAGATG 57.244 33.333 0.00 0.00 38.99 2.90
146 147 9.586435 CAATGCATATACGAGGTATATTGAAGA 57.414 33.333 0.00 0.00 38.99 2.87
147 148 9.586435 TCAATGCATATACGAGGTATATTGAAG 57.414 33.333 0.00 0.00 38.99 3.02
154 155 9.982651 GGTATAATCAATGCATATACGAGGTAT 57.017 33.333 0.00 0.80 34.70 2.73
155 156 8.418662 GGGTATAATCAATGCATATACGAGGTA 58.581 37.037 0.00 0.00 34.70 3.08
156 157 7.272978 GGGTATAATCAATGCATATACGAGGT 58.727 38.462 0.00 0.00 34.70 3.85
157 158 6.706270 GGGGTATAATCAATGCATATACGAGG 59.294 42.308 0.00 0.00 34.70 4.63
158 159 7.500992 AGGGGTATAATCAATGCATATACGAG 58.499 38.462 0.00 0.00 34.70 4.18
159 160 7.432148 AGGGGTATAATCAATGCATATACGA 57.568 36.000 0.00 0.00 34.70 3.43
160 161 9.778741 ATAAGGGGTATAATCAATGCATATACG 57.221 33.333 0.00 0.00 34.70 3.06
165 166 9.193806 GAATGATAAGGGGTATAATCAATGCAT 57.806 33.333 0.00 0.00 32.47 3.96
166 167 8.393259 AGAATGATAAGGGGTATAATCAATGCA 58.607 33.333 0.00 0.00 32.47 3.96
167 168 8.814038 AGAATGATAAGGGGTATAATCAATGC 57.186 34.615 0.00 0.00 32.47 3.56
168 169 9.964354 TGAGAATGATAAGGGGTATAATCAATG 57.036 33.333 0.00 0.00 32.47 2.82
178 179 9.170890 TGAAGTATATTGAGAATGATAAGGGGT 57.829 33.333 0.00 0.00 0.00 4.95
211 212 9.990868 AAAACTTGTATTGGGGTATCTTAGAAT 57.009 29.630 0.00 0.00 0.00 2.40
212 213 9.238368 CAAAACTTGTATTGGGGTATCTTAGAA 57.762 33.333 0.00 0.00 0.00 2.10
213 214 8.387813 ACAAAACTTGTATTGGGGTATCTTAGA 58.612 33.333 0.00 0.00 43.27 2.10
214 215 8.575649 ACAAAACTTGTATTGGGGTATCTTAG 57.424 34.615 0.00 0.00 43.27 2.18
215 216 8.798402 CAACAAAACTTGTATTGGGGTATCTTA 58.202 33.333 0.00 0.00 44.59 2.10
216 217 7.507616 TCAACAAAACTTGTATTGGGGTATCTT 59.492 33.333 0.00 0.00 44.59 2.40
217 218 7.007723 TCAACAAAACTTGTATTGGGGTATCT 58.992 34.615 0.00 0.00 44.59 1.98
218 219 7.222000 TCAACAAAACTTGTATTGGGGTATC 57.778 36.000 0.00 0.00 44.59 2.24
219 220 7.604657 TTCAACAAAACTTGTATTGGGGTAT 57.395 32.000 0.00 0.00 44.59 2.73
220 221 7.419711 TTTCAACAAAACTTGTATTGGGGTA 57.580 32.000 0.00 0.00 44.59 3.69
221 222 5.941555 TTCAACAAAACTTGTATTGGGGT 57.058 34.783 0.00 0.00 44.59 4.95
222 223 7.617041 TTTTTCAACAAAACTTGTATTGGGG 57.383 32.000 0.00 0.00 44.59 4.96
246 247 9.783256 GCAAAAAGTAGGTCGTAAATGATATTT 57.217 29.630 0.00 0.00 0.00 1.40
247 248 8.952278 TGCAAAAAGTAGGTCGTAAATGATATT 58.048 29.630 0.00 0.00 0.00 1.28
248 249 8.500753 TGCAAAAAGTAGGTCGTAAATGATAT 57.499 30.769 0.00 0.00 0.00 1.63
249 250 7.604927 ACTGCAAAAAGTAGGTCGTAAATGATA 59.395 33.333 0.00 0.00 33.78 2.15
250 251 6.430000 ACTGCAAAAAGTAGGTCGTAAATGAT 59.570 34.615 0.00 0.00 33.78 2.45
251 252 5.761234 ACTGCAAAAAGTAGGTCGTAAATGA 59.239 36.000 0.00 0.00 33.78 2.57
252 253 5.997385 ACTGCAAAAAGTAGGTCGTAAATG 58.003 37.500 0.00 0.00 33.78 2.32
253 254 7.916914 ATACTGCAAAAAGTAGGTCGTAAAT 57.083 32.000 0.00 0.00 36.14 1.40
254 255 7.331687 GGTATACTGCAAAAAGTAGGTCGTAAA 59.668 37.037 2.25 0.00 36.14 2.01
255 256 6.813152 GGTATACTGCAAAAAGTAGGTCGTAA 59.187 38.462 2.25 0.00 36.14 3.18
256 257 6.153340 AGGTATACTGCAAAAAGTAGGTCGTA 59.847 38.462 2.25 0.00 36.14 3.43
257 258 5.046807 AGGTATACTGCAAAAAGTAGGTCGT 60.047 40.000 2.25 0.00 36.14 4.34
258 259 5.416947 AGGTATACTGCAAAAAGTAGGTCG 58.583 41.667 2.25 0.00 36.14 4.79
259 260 7.683437 AAAGGTATACTGCAAAAAGTAGGTC 57.317 36.000 2.25 0.00 36.14 3.85
260 261 8.473358 AAAAAGGTATACTGCAAAAAGTAGGT 57.527 30.769 2.25 0.00 36.14 3.08
261 262 8.573035 TGAAAAAGGTATACTGCAAAAAGTAGG 58.427 33.333 2.25 0.00 36.14 3.18
262 263 9.394477 GTGAAAAAGGTATACTGCAAAAAGTAG 57.606 33.333 2.25 0.00 36.14 2.57
263 264 8.071368 CGTGAAAAAGGTATACTGCAAAAAGTA 58.929 33.333 2.25 0.00 37.08 2.24
264 265 6.915843 CGTGAAAAAGGTATACTGCAAAAAGT 59.084 34.615 2.25 0.00 0.00 2.66
265 266 6.915843 ACGTGAAAAAGGTATACTGCAAAAAG 59.084 34.615 2.25 0.00 0.00 2.27
266 267 6.797454 ACGTGAAAAAGGTATACTGCAAAAA 58.203 32.000 2.25 0.00 0.00 1.94
267 268 6.380095 ACGTGAAAAAGGTATACTGCAAAA 57.620 33.333 2.25 0.00 0.00 2.44
268 269 6.482641 TGTACGTGAAAAAGGTATACTGCAAA 59.517 34.615 0.00 0.00 32.09 3.68
269 270 5.990386 TGTACGTGAAAAAGGTATACTGCAA 59.010 36.000 0.00 0.00 32.09 4.08
270 271 5.539979 TGTACGTGAAAAAGGTATACTGCA 58.460 37.500 0.00 0.00 32.09 4.41
271 272 6.470557 TTGTACGTGAAAAAGGTATACTGC 57.529 37.500 0.00 0.00 32.09 4.40
272 273 7.853524 TGTTTGTACGTGAAAAAGGTATACTG 58.146 34.615 0.00 0.00 32.09 2.74
273 274 8.436046 TTGTTTGTACGTGAAAAAGGTATACT 57.564 30.769 0.00 0.00 32.09 2.12
274 275 9.667989 ATTTGTTTGTACGTGAAAAAGGTATAC 57.332 29.630 0.00 0.00 32.09 1.47
275 276 9.881529 GATTTGTTTGTACGTGAAAAAGGTATA 57.118 29.630 0.00 0.00 32.09 1.47
276 277 8.407064 TGATTTGTTTGTACGTGAAAAAGGTAT 58.593 29.630 0.00 0.00 32.09 2.73
277 278 7.759465 TGATTTGTTTGTACGTGAAAAAGGTA 58.241 30.769 0.00 0.00 0.00 3.08
278 279 6.622549 TGATTTGTTTGTACGTGAAAAAGGT 58.377 32.000 0.00 0.00 0.00 3.50
279 280 6.750039 ACTGATTTGTTTGTACGTGAAAAAGG 59.250 34.615 0.00 0.00 0.00 3.11
280 281 7.734538 ACTGATTTGTTTGTACGTGAAAAAG 57.265 32.000 0.00 0.00 0.00 2.27
285 286 9.012448 CGTATATACTGATTTGTTTGTACGTGA 57.988 33.333 11.05 0.00 35.80 4.35
286 287 8.800972 ACGTATATACTGATTTGTTTGTACGTG 58.199 33.333 11.05 0.00 43.73 4.49
287 288 8.915871 ACGTATATACTGATTTGTTTGTACGT 57.084 30.769 11.05 11.54 42.22 3.57
307 308 8.403236 GCCTCATATTTTCAAAGGTTTACGTAT 58.597 33.333 0.00 0.00 0.00 3.06
308 309 7.390996 TGCCTCATATTTTCAAAGGTTTACGTA 59.609 33.333 0.00 0.00 0.00 3.57
309 310 6.207810 TGCCTCATATTTTCAAAGGTTTACGT 59.792 34.615 0.00 0.00 0.00 3.57
310 311 6.526674 GTGCCTCATATTTTCAAAGGTTTACG 59.473 38.462 0.00 0.00 0.00 3.18
311 312 7.328493 GTGTGCCTCATATTTTCAAAGGTTTAC 59.672 37.037 0.00 0.00 0.00 2.01
312 313 7.014711 TGTGTGCCTCATATTTTCAAAGGTTTA 59.985 33.333 0.00 0.00 0.00 2.01
313 314 6.183360 TGTGTGCCTCATATTTTCAAAGGTTT 60.183 34.615 0.00 0.00 0.00 3.27
314 315 5.304101 TGTGTGCCTCATATTTTCAAAGGTT 59.696 36.000 0.00 0.00 0.00 3.50
315 316 4.832266 TGTGTGCCTCATATTTTCAAAGGT 59.168 37.500 0.00 0.00 0.00 3.50
316 317 5.389859 TGTGTGCCTCATATTTTCAAAGG 57.610 39.130 0.00 0.00 0.00 3.11
317 318 6.623486 TCATGTGTGCCTCATATTTTCAAAG 58.377 36.000 0.00 0.00 0.00 2.77
318 319 6.587206 TCATGTGTGCCTCATATTTTCAAA 57.413 33.333 0.00 0.00 0.00 2.69
319 320 6.778834 ATCATGTGTGCCTCATATTTTCAA 57.221 33.333 0.00 0.00 0.00 2.69
320 321 6.778834 AATCATGTGTGCCTCATATTTTCA 57.221 33.333 0.00 0.00 0.00 2.69
321 322 8.483307 AAAAATCATGTGTGCCTCATATTTTC 57.517 30.769 0.00 0.00 0.00 2.29
347 348 9.713684 AGATACCCTAAAATGGATTTCATGAAA 57.286 29.630 22.52 22.52 35.99 2.69
350 351 9.799106 ACTAGATACCCTAAAATGGATTTCATG 57.201 33.333 0.00 0.00 35.99 3.07
421 422 8.417106 CGCTCCTCATATACCACATAGATAAAT 58.583 37.037 0.00 0.00 0.00 1.40
422 423 7.614192 TCGCTCCTCATATACCACATAGATAAA 59.386 37.037 0.00 0.00 0.00 1.40
423 424 7.116736 TCGCTCCTCATATACCACATAGATAA 58.883 38.462 0.00 0.00 0.00 1.75
424 425 6.659824 TCGCTCCTCATATACCACATAGATA 58.340 40.000 0.00 0.00 0.00 1.98
425 426 5.510430 TCGCTCCTCATATACCACATAGAT 58.490 41.667 0.00 0.00 0.00 1.98
426 427 4.918588 TCGCTCCTCATATACCACATAGA 58.081 43.478 0.00 0.00 0.00 1.98
427 428 4.944317 TCTCGCTCCTCATATACCACATAG 59.056 45.833 0.00 0.00 0.00 2.23
428 429 4.918588 TCTCGCTCCTCATATACCACATA 58.081 43.478 0.00 0.00 0.00 2.29
429 430 3.767711 TCTCGCTCCTCATATACCACAT 58.232 45.455 0.00 0.00 0.00 3.21
430 431 3.223674 TCTCGCTCCTCATATACCACA 57.776 47.619 0.00 0.00 0.00 4.17
431 432 4.792521 ATTCTCGCTCCTCATATACCAC 57.207 45.455 0.00 0.00 0.00 4.16
432 433 5.321927 TGTATTCTCGCTCCTCATATACCA 58.678 41.667 0.00 0.00 0.00 3.25
433 434 5.899120 TGTATTCTCGCTCCTCATATACC 57.101 43.478 0.00 0.00 0.00 2.73
434 435 8.215926 AGTATGTATTCTCGCTCCTCATATAC 57.784 38.462 0.00 0.00 0.00 1.47
435 436 7.499563 GGAGTATGTATTCTCGCTCCTCATATA 59.500 40.741 0.00 0.00 39.36 0.86
436 437 6.320164 GGAGTATGTATTCTCGCTCCTCATAT 59.680 42.308 0.00 0.00 39.36 1.78
437 438 5.648526 GGAGTATGTATTCTCGCTCCTCATA 59.351 44.000 0.00 0.00 39.36 2.15
438 439 4.461081 GGAGTATGTATTCTCGCTCCTCAT 59.539 45.833 0.00 0.00 39.36 2.90
439 440 3.821600 GGAGTATGTATTCTCGCTCCTCA 59.178 47.826 0.00 0.00 39.36 3.86
440 441 3.191791 GGGAGTATGTATTCTCGCTCCTC 59.808 52.174 8.10 0.00 41.46 3.71
441 442 3.158676 GGGAGTATGTATTCTCGCTCCT 58.841 50.000 8.10 0.00 41.46 3.69
442 443 2.891580 TGGGAGTATGTATTCTCGCTCC 59.108 50.000 13.72 0.00 41.84 4.70
443 444 3.821600 TCTGGGAGTATGTATTCTCGCTC 59.178 47.826 13.72 0.00 41.84 5.03
444 445 3.833732 TCTGGGAGTATGTATTCTCGCT 58.166 45.455 13.72 0.00 41.84 4.93
445 446 4.585955 TTCTGGGAGTATGTATTCTCGC 57.414 45.455 8.09 8.09 41.73 5.03
446 447 7.595502 GTGTATTTCTGGGAGTATGTATTCTCG 59.404 40.741 0.00 0.00 0.00 4.04
447 448 8.421784 TGTGTATTTCTGGGAGTATGTATTCTC 58.578 37.037 0.00 0.00 0.00 2.87
448 449 8.204836 GTGTGTATTTCTGGGAGTATGTATTCT 58.795 37.037 0.00 0.00 0.00 2.40
449 450 7.985184 TGTGTGTATTTCTGGGAGTATGTATTC 59.015 37.037 0.00 0.00 0.00 1.75
450 451 7.769044 GTGTGTGTATTTCTGGGAGTATGTATT 59.231 37.037 0.00 0.00 0.00 1.89
451 452 7.093068 TGTGTGTGTATTTCTGGGAGTATGTAT 60.093 37.037 0.00 0.00 0.00 2.29
452 453 6.211785 TGTGTGTGTATTTCTGGGAGTATGTA 59.788 38.462 0.00 0.00 0.00 2.29
453 454 5.012664 TGTGTGTGTATTTCTGGGAGTATGT 59.987 40.000 0.00 0.00 0.00 2.29
454 455 5.487433 TGTGTGTGTATTTCTGGGAGTATG 58.513 41.667 0.00 0.00 0.00 2.39
455 456 5.755409 TGTGTGTGTATTTCTGGGAGTAT 57.245 39.130 0.00 0.00 0.00 2.12
456 457 5.755409 ATGTGTGTGTATTTCTGGGAGTA 57.245 39.130 0.00 0.00 0.00 2.59
457 458 4.640771 ATGTGTGTGTATTTCTGGGAGT 57.359 40.909 0.00 0.00 0.00 3.85
475 476 9.021807 GCCTCGTGGGTGTATATATATATATGT 57.978 37.037 20.93 10.68 37.43 2.29
476 477 9.244292 AGCCTCGTGGGTGTATATATATATATG 57.756 37.037 20.93 6.00 43.33 1.78
477 478 9.463902 GAGCCTCGTGGGTGTATATATATATAT 57.536 37.037 13.76 17.37 45.24 0.86
478 479 8.442374 TGAGCCTCGTGGGTGTATATATATATA 58.558 37.037 13.76 8.16 45.24 0.86
479 480 7.295340 TGAGCCTCGTGGGTGTATATATATAT 58.705 38.462 13.76 10.10 45.24 0.86
480 481 6.665695 TGAGCCTCGTGGGTGTATATATATA 58.334 40.000 13.76 0.00 45.24 0.86
481 482 5.516044 TGAGCCTCGTGGGTGTATATATAT 58.484 41.667 13.76 0.00 45.24 0.86
482 483 4.925836 TGAGCCTCGTGGGTGTATATATA 58.074 43.478 13.76 0.00 45.24 0.86
483 484 3.774734 TGAGCCTCGTGGGTGTATATAT 58.225 45.455 13.76 0.00 45.24 0.86
484 485 3.232720 TGAGCCTCGTGGGTGTATATA 57.767 47.619 13.76 0.00 45.24 0.86
485 486 2.082140 TGAGCCTCGTGGGTGTATAT 57.918 50.000 13.76 0.00 45.24 0.86
486 487 1.754803 CTTGAGCCTCGTGGGTGTATA 59.245 52.381 13.76 0.00 45.24 1.47
487 488 0.537188 CTTGAGCCTCGTGGGTGTAT 59.463 55.000 13.76 0.00 45.24 2.29
488 489 1.972198 CTTGAGCCTCGTGGGTGTA 59.028 57.895 13.76 0.00 45.24 2.90
489 490 2.743718 CTTGAGCCTCGTGGGTGT 59.256 61.111 13.76 0.00 45.24 4.16
490 491 2.743928 GCTTGAGCCTCGTGGGTG 60.744 66.667 13.76 0.00 45.24 4.61
492 493 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
493 494 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
494 495 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
495 496 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
496 497 2.076100 TGTTGTATTGCTTGAGCCTCG 58.924 47.619 0.00 0.00 41.18 4.63
497 498 4.503741 TTTGTTGTATTGCTTGAGCCTC 57.496 40.909 0.00 0.00 41.18 4.70
498 499 4.342092 ACTTTTGTTGTATTGCTTGAGCCT 59.658 37.500 0.00 0.00 41.18 4.58
499 500 4.620982 ACTTTTGTTGTATTGCTTGAGCC 58.379 39.130 0.00 0.00 41.18 4.70
500 501 4.681483 GGACTTTTGTTGTATTGCTTGAGC 59.319 41.667 0.00 0.00 42.50 4.26
501 502 5.687285 GTGGACTTTTGTTGTATTGCTTGAG 59.313 40.000 0.00 0.00 0.00 3.02
502 503 5.451242 GGTGGACTTTTGTTGTATTGCTTGA 60.451 40.000 0.00 0.00 0.00 3.02
503 504 4.744631 GGTGGACTTTTGTTGTATTGCTTG 59.255 41.667 0.00 0.00 0.00 4.01
504 505 4.404073 TGGTGGACTTTTGTTGTATTGCTT 59.596 37.500 0.00 0.00 0.00 3.91
505 506 3.957497 TGGTGGACTTTTGTTGTATTGCT 59.043 39.130 0.00 0.00 0.00 3.91
506 507 4.314740 TGGTGGACTTTTGTTGTATTGC 57.685 40.909 0.00 0.00 0.00 3.56
507 508 9.139174 GAATATTGGTGGACTTTTGTTGTATTG 57.861 33.333 0.00 0.00 0.00 1.90
508 509 8.311109 GGAATATTGGTGGACTTTTGTTGTATT 58.689 33.333 0.00 0.00 0.00 1.89
509 510 7.673926 AGGAATATTGGTGGACTTTTGTTGTAT 59.326 33.333 0.00 0.00 0.00 2.29
510 511 7.007723 AGGAATATTGGTGGACTTTTGTTGTA 58.992 34.615 0.00 0.00 0.00 2.41
511 512 5.838521 AGGAATATTGGTGGACTTTTGTTGT 59.161 36.000 0.00 0.00 0.00 3.32
512 513 6.209391 AGAGGAATATTGGTGGACTTTTGTTG 59.791 38.462 0.00 0.00 0.00 3.33
513 514 6.314917 AGAGGAATATTGGTGGACTTTTGTT 58.685 36.000 0.00 0.00 0.00 2.83
514 515 5.892348 AGAGGAATATTGGTGGACTTTTGT 58.108 37.500 0.00 0.00 0.00 2.83
515 516 6.183347 AGAGAGGAATATTGGTGGACTTTTG 58.817 40.000 0.00 0.00 0.00 2.44
516 517 6.394345 AGAGAGGAATATTGGTGGACTTTT 57.606 37.500 0.00 0.00 0.00 2.27
517 518 5.104318 GGAGAGAGGAATATTGGTGGACTTT 60.104 44.000 0.00 0.00 0.00 2.66
518 519 4.410555 GGAGAGAGGAATATTGGTGGACTT 59.589 45.833 0.00 0.00 0.00 3.01
519 520 3.970640 GGAGAGAGGAATATTGGTGGACT 59.029 47.826 0.00 0.00 0.00 3.85
520 521 3.071747 GGGAGAGAGGAATATTGGTGGAC 59.928 52.174 0.00 0.00 0.00 4.02
521 522 3.051032 AGGGAGAGAGGAATATTGGTGGA 60.051 47.826 0.00 0.00 0.00 4.02
522 523 3.321950 AGGGAGAGAGGAATATTGGTGG 58.678 50.000 0.00 0.00 0.00 4.61
523 524 4.657969 AGAAGGGAGAGAGGAATATTGGTG 59.342 45.833 0.00 0.00 0.00 4.17
524 525 4.901927 AGAAGGGAGAGAGGAATATTGGT 58.098 43.478 0.00 0.00 0.00 3.67
525 526 6.327626 TGTTAGAAGGGAGAGAGGAATATTGG 59.672 42.308 0.00 0.00 0.00 3.16
526 527 7.366847 TGTTAGAAGGGAGAGAGGAATATTG 57.633 40.000 0.00 0.00 0.00 1.90
527 528 7.791766 TCATGTTAGAAGGGAGAGAGGAATATT 59.208 37.037 0.00 0.00 0.00 1.28
528 529 7.234577 GTCATGTTAGAAGGGAGAGAGGAATAT 59.765 40.741 0.00 0.00 0.00 1.28
529 530 6.551601 GTCATGTTAGAAGGGAGAGAGGAATA 59.448 42.308 0.00 0.00 0.00 1.75
530 531 5.365314 GTCATGTTAGAAGGGAGAGAGGAAT 59.635 44.000 0.00 0.00 0.00 3.01
531 532 4.712337 GTCATGTTAGAAGGGAGAGAGGAA 59.288 45.833 0.00 0.00 0.00 3.36
532 533 4.282496 GTCATGTTAGAAGGGAGAGAGGA 58.718 47.826 0.00 0.00 0.00 3.71
533 534 3.067461 CGTCATGTTAGAAGGGAGAGAGG 59.933 52.174 0.00 0.00 0.00 3.69
534 535 3.697045 ACGTCATGTTAGAAGGGAGAGAG 59.303 47.826 0.00 0.00 0.00 3.20
535 536 3.698289 ACGTCATGTTAGAAGGGAGAGA 58.302 45.455 0.00 0.00 0.00 3.10
536 537 4.457834 AACGTCATGTTAGAAGGGAGAG 57.542 45.455 0.00 0.00 39.61 3.20
537 538 4.617530 CGAAACGTCATGTTAGAAGGGAGA 60.618 45.833 0.00 0.00 40.84 3.71
538 539 3.612860 CGAAACGTCATGTTAGAAGGGAG 59.387 47.826 0.00 0.00 40.84 4.30
539 540 3.581755 CGAAACGTCATGTTAGAAGGGA 58.418 45.455 0.00 0.00 40.84 4.20
540 541 2.671396 CCGAAACGTCATGTTAGAAGGG 59.329 50.000 0.00 0.00 40.84 3.95
541 542 2.671396 CCCGAAACGTCATGTTAGAAGG 59.329 50.000 0.00 0.00 40.84 3.46
542 543 3.581755 TCCCGAAACGTCATGTTAGAAG 58.418 45.455 0.00 0.00 40.84 2.85
543 544 3.663995 TCCCGAAACGTCATGTTAGAA 57.336 42.857 0.00 0.00 40.84 2.10
544 545 3.006110 AGTTCCCGAAACGTCATGTTAGA 59.994 43.478 0.00 0.00 43.02 2.10
545 546 3.323243 AGTTCCCGAAACGTCATGTTAG 58.677 45.455 0.00 0.00 43.02 2.34
546 547 3.006110 AGAGTTCCCGAAACGTCATGTTA 59.994 43.478 0.00 0.00 43.02 2.41
547 548 2.140717 GAGTTCCCGAAACGTCATGTT 58.859 47.619 0.00 0.00 43.02 2.71
548 549 1.343465 AGAGTTCCCGAAACGTCATGT 59.657 47.619 0.00 0.00 43.02 3.21
549 550 1.993370 GAGAGTTCCCGAAACGTCATG 59.007 52.381 0.00 0.00 43.02 3.07
550 551 1.067071 GGAGAGTTCCCGAAACGTCAT 60.067 52.381 0.00 0.00 43.02 3.06
551 552 0.316204 GGAGAGTTCCCGAAACGTCA 59.684 55.000 0.00 0.00 43.02 4.35
552 553 0.602060 AGGAGAGTTCCCGAAACGTC 59.398 55.000 0.00 0.00 45.24 4.34
553 554 1.543358 GTAGGAGAGTTCCCGAAACGT 59.457 52.381 0.00 0.00 45.24 3.99
554 555 1.135170 GGTAGGAGAGTTCCCGAAACG 60.135 57.143 0.00 0.00 45.24 3.60
555 556 1.135170 CGGTAGGAGAGTTCCCGAAAC 60.135 57.143 0.00 0.00 45.24 2.78
556 557 1.180029 CGGTAGGAGAGTTCCCGAAA 58.820 55.000 0.00 0.00 45.24 3.46
568 569 1.952102 GATCGCCCAACACGGTAGGA 61.952 60.000 0.00 0.00 0.00 2.94
610 611 1.961277 CACTTCACCCCGTGCTCAC 60.961 63.158 0.00 0.00 32.98 3.51
710 714 4.398044 CGGGCATTAATGTCTTGGTTTAGT 59.602 41.667 18.99 0.00 31.84 2.24
711 715 4.202010 CCGGGCATTAATGTCTTGGTTTAG 60.202 45.833 18.99 2.33 31.84 1.85
712 716 3.697045 CCGGGCATTAATGTCTTGGTTTA 59.303 43.478 18.99 0.00 31.84 2.01
713 717 2.495669 CCGGGCATTAATGTCTTGGTTT 59.504 45.455 18.99 0.00 31.84 3.27
733 738 1.382009 GGGAGAGGAGGTCTGGTCC 60.382 68.421 0.00 0.00 34.71 4.46
753 773 0.190069 TACGATGCTGGGGTAGGGAT 59.810 55.000 0.00 0.00 0.00 3.85
754 774 0.469331 CTACGATGCTGGGGTAGGGA 60.469 60.000 0.00 0.00 32.06 4.20
756 776 1.367840 GCTACGATGCTGGGGTAGG 59.632 63.158 0.00 0.00 35.36 3.18
757 777 0.032678 CTGCTACGATGCTGGGGTAG 59.967 60.000 0.00 0.00 37.33 3.18
758 778 2.028125 GCTGCTACGATGCTGGGGTA 62.028 60.000 11.36 0.00 33.41 3.69
759 779 2.903357 CTGCTACGATGCTGGGGT 59.097 61.111 0.00 0.00 0.00 4.95
760 780 2.590007 GCTGCTACGATGCTGGGG 60.590 66.667 11.36 0.85 33.41 4.96
761 781 1.886313 CTGCTGCTACGATGCTGGG 60.886 63.158 0.00 2.65 33.41 4.45
762 782 2.532256 GCTGCTGCTACGATGCTGG 61.532 63.158 8.53 4.47 36.03 4.85
763 783 2.532256 GGCTGCTGCTACGATGCTG 61.532 63.158 15.64 0.00 39.59 4.41
764 784 2.202987 GGCTGCTGCTACGATGCT 60.203 61.111 15.64 0.00 39.59 3.79
765 785 2.044832 CTTGGCTGCTGCTACGATGC 62.045 60.000 15.64 0.00 39.59 3.91
791 811 3.369400 CCCCAAACGATTGCGCCA 61.369 61.111 4.18 0.00 42.48 5.69
810 830 4.070552 GAGGAGCTCCGCCGTGTT 62.071 66.667 26.95 7.70 42.08 3.32
869 896 2.438763 CCTGAAGAGGAGCAAGGATGAT 59.561 50.000 0.00 0.00 42.93 2.45
877 904 1.205655 CGATGAACCTGAAGAGGAGCA 59.794 52.381 0.00 0.00 42.93 4.26
878 905 1.472376 CCGATGAACCTGAAGAGGAGC 60.472 57.143 0.00 0.00 42.93 4.70
886 916 4.507710 CTTGATTCTTCCGATGAACCTGA 58.492 43.478 0.00 0.00 0.00 3.86
951 1061 1.597461 GGCTTCGGTTAGCTGGACT 59.403 57.895 0.00 0.00 40.99 3.85
1041 1174 1.515020 CAGCTTCCTGAGGACGGAG 59.485 63.158 0.00 0.00 41.77 4.63
1157 1290 4.008933 GATCCTCCGCCCGGGATG 62.009 72.222 29.31 16.32 46.04 3.51
1216 1349 0.738762 TCCTCCACGTCGTACGAGAG 60.739 60.000 20.18 19.95 46.05 3.20
1280 1413 2.619177 CCGTCTGAGGTAGTATCACCAG 59.381 54.545 0.00 0.00 41.40 4.00
1281 1414 2.651455 CCGTCTGAGGTAGTATCACCA 58.349 52.381 0.00 0.00 41.40 4.17
1282 1415 1.337387 GCCGTCTGAGGTAGTATCACC 59.663 57.143 0.00 0.00 39.02 4.02
1283 1416 2.299521 AGCCGTCTGAGGTAGTATCAC 58.700 52.381 0.00 0.00 0.00 3.06
1284 1417 2.730934 AGCCGTCTGAGGTAGTATCA 57.269 50.000 0.00 0.00 0.00 2.15
1285 1418 3.215975 AGAAGCCGTCTGAGGTAGTATC 58.784 50.000 0.00 0.00 34.29 2.24
1299 1432 1.929836 CCGATCTTTTCAGAGAAGCCG 59.070 52.381 0.00 2.92 30.36 5.52
1318 1451 4.785453 CTCCCTCAACCAGGCGCC 62.785 72.222 21.89 21.89 41.80 6.53
1370 1503 2.503061 CCCTGGAGATGCTGTCGG 59.497 66.667 0.00 0.00 0.00 4.79
1404 1549 2.844839 CAGTCCCGGGGATCCTCC 60.845 72.222 23.50 10.36 32.73 4.30
1484 1632 2.590092 CTCCCCCGTCCACCATTC 59.410 66.667 0.00 0.00 0.00 2.67
1489 1637 3.400054 CTTCCCTCCCCCGTCCAC 61.400 72.222 0.00 0.00 0.00 4.02
1492 1640 3.787001 CTGCTTCCCTCCCCCGTC 61.787 72.222 0.00 0.00 0.00 4.79
1582 1730 1.233019 CACTCAAACTGCTCACCCAG 58.767 55.000 0.00 0.00 38.78 4.45
1661 1809 2.055689 CTCACACCCCAGTTGGCTGA 62.056 60.000 0.00 0.00 45.28 4.26
1686 1834 2.802719 GCATCCCCAGTTAAGGTTTGA 58.197 47.619 0.00 0.00 0.00 2.69
1718 1866 2.753452 AGGAAATTAGAGACGCTGTCGA 59.247 45.455 3.62 0.00 37.67 4.20
1719 1867 3.152261 AGGAAATTAGAGACGCTGTCG 57.848 47.619 3.62 0.00 37.67 4.35
1761 1909 7.679783 TCCTATTGTCTGAATTCTGAACTGAA 58.320 34.615 15.70 7.83 0.00 3.02
1762 1910 7.244886 TCCTATTGTCTGAATTCTGAACTGA 57.755 36.000 15.70 5.67 0.00 3.41
1795 1943 5.126384 TGGGGAAGAACACAACTTGTAAAAG 59.874 40.000 0.00 0.00 37.51 2.27
1801 1949 2.358898 CTGTGGGGAAGAACACAACTTG 59.641 50.000 0.00 0.00 45.87 3.16
1803 1951 1.750682 GCTGTGGGGAAGAACACAACT 60.751 52.381 0.00 0.00 45.87 3.16
1836 1984 6.316140 TCATGCCTAATGAGTAATGAACACAC 59.684 38.462 0.00 0.00 40.50 3.82
1909 2057 3.897325 TCGTGTCGCTGGAACATATATC 58.103 45.455 0.00 0.00 38.20 1.63
1974 2126 1.774217 ACTGGCCCACCTTTCTCCA 60.774 57.895 0.00 0.00 36.63 3.86
1990 2142 8.834749 GGATACAAACTGAAAGAACTTAGACT 57.165 34.615 0.00 0.00 37.43 3.24
2031 2183 6.676950 CACTATTCAAAAACATGGTAGTGCA 58.323 36.000 0.00 0.00 35.37 4.57
2055 2207 6.425577 AAATTAACATTGGCATGAATGTGC 57.574 33.333 12.16 0.00 44.15 4.57
2058 2210 8.884726 TCATCAAAATTAACATTGGCATGAATG 58.115 29.630 0.00 0.71 38.97 2.67
2059 2211 8.885722 GTCATCAAAATTAACATTGGCATGAAT 58.114 29.630 0.00 0.00 34.11 2.57
2123 2283 2.185004 TACTTGCTGAAACAGGAGCC 57.815 50.000 0.00 0.00 32.58 4.70
2154 2314 3.945285 TGTTCTCGAAAAGGAAGCAGTTT 59.055 39.130 0.00 0.00 0.00 2.66
2155 2315 3.312697 GTGTTCTCGAAAAGGAAGCAGTT 59.687 43.478 0.00 0.00 0.00 3.16
2156 2316 2.872858 GTGTTCTCGAAAAGGAAGCAGT 59.127 45.455 0.00 0.00 0.00 4.40
2169 2329 8.116753 AGCTTCAAAATTTATATCGTGTTCTCG 58.883 33.333 0.00 0.00 0.00 4.04
2289 2449 4.374843 TGTAGGCAAAATGTGATCATGC 57.625 40.909 9.31 9.31 34.19 4.06
2409 2569 4.142988 GGCACATGATTTTGCAATGTCAAG 60.143 41.667 15.51 13.91 40.75 3.02
2504 2664 2.563297 TCTGCTGCCAGAATTGCTG 58.437 52.632 0.00 0.00 44.79 4.41
2512 2672 2.286294 GTCGTGATTATTCTGCTGCCAG 59.714 50.000 0.00 0.00 40.54 4.85
2570 2730 2.631160 AAACTCGACCACCACATGAA 57.369 45.000 0.00 0.00 0.00 2.57
2579 2739 4.423732 GGCTTAACGTATAAACTCGACCA 58.576 43.478 0.00 0.00 0.00 4.02
2615 2775 3.379057 TGAAAAACAACCTTTCCGAGTCC 59.621 43.478 0.00 0.00 32.79 3.85
2636 2796 6.443934 TCACCGGAATTAAACACCATATTG 57.556 37.500 9.46 0.00 0.00 1.90
2639 2799 3.942748 GCTCACCGGAATTAAACACCATA 59.057 43.478 9.46 0.00 0.00 2.74
2689 2849 5.754406 CCACATTTCTGCAAGATTTTGTCAA 59.246 36.000 0.00 0.00 46.36 3.18
2696 2856 3.233507 ACCACCACATTTCTGCAAGATT 58.766 40.909 0.00 0.00 46.36 2.40
2747 2907 1.299316 CGTGTTGGCAACCAGCAAG 60.299 57.895 26.31 7.44 45.65 4.01
2795 2955 1.271934 CCGAGTCCATGCCTGATAGAG 59.728 57.143 0.00 0.00 0.00 2.43
2946 3106 2.810274 CGGCAATCCATCTCAATACCAG 59.190 50.000 0.00 0.00 0.00 4.00
2952 3112 0.181114 CCCTCGGCAATCCATCTCAA 59.819 55.000 0.00 0.00 0.00 3.02
3057 3217 5.045869 CACCAAACTTAGTTATCTCCCCTGA 60.046 44.000 0.00 0.00 0.00 3.86
3070 3230 3.568430 GGTTTCCACCTCACCAAACTTAG 59.432 47.826 0.00 0.00 40.44 2.18
3091 3251 0.752658 TATGCCATGGACTCGACAGG 59.247 55.000 18.40 0.00 0.00 4.00
3135 3295 6.902224 AGTAACAAAATTGTCTTGGTTTGC 57.098 33.333 0.00 0.00 41.31 3.68
3178 3338 3.731652 TGTTTTGTGGCTCAGGATTTG 57.268 42.857 0.00 0.00 0.00 2.32
3191 3351 1.314730 ATCGACGGGCTTTGTTTTGT 58.685 45.000 0.00 0.00 0.00 2.83
3202 3362 0.102481 CTGTAGGGACAATCGACGGG 59.898 60.000 0.00 0.00 34.35 5.28
3215 3375 3.703001 ATTTCACTGTCACCCTGTAGG 57.297 47.619 0.00 0.00 43.78 3.18
3243 3403 6.123651 ACCGGGCATTACACAAAATAAGATA 58.876 36.000 6.32 0.00 0.00 1.98
3328 3488 5.590259 CCAGAACCTTCCATGTCGAAAATAT 59.410 40.000 0.00 0.00 0.00 1.28
3335 3495 0.392998 CCCCAGAACCTTCCATGTCG 60.393 60.000 0.00 0.00 0.00 4.35
3338 3498 1.355720 ACTTCCCCAGAACCTTCCATG 59.644 52.381 0.00 0.00 0.00 3.66
3401 3561 3.774734 TGACTTGAGCCTCAGGTACTTA 58.225 45.455 9.70 0.00 36.79 2.24
3431 3591 2.825532 TGCTATTTGTTGGGGAAGCTTC 59.174 45.455 18.54 18.54 0.00 3.86
3503 3663 4.037089 TGATTGATGGCTGATGGAATTTCG 59.963 41.667 0.00 0.00 0.00 3.46
3541 3701 7.952101 CAGTTTCATCGTTAACAACTAGACATG 59.048 37.037 6.39 0.00 0.00 3.21
3543 3703 6.982141 ACAGTTTCATCGTTAACAACTAGACA 59.018 34.615 6.39 0.00 0.00 3.41
3567 3727 4.261447 GCCACCAATTTCATCCGGTAATAC 60.261 45.833 0.00 0.00 0.00 1.89
3609 3769 5.245531 GGTGTTGACATTGATACCTCTCAA 58.754 41.667 0.00 0.00 39.35 3.02
3611 3771 4.192317 GGGTGTTGACATTGATACCTCTC 58.808 47.826 0.00 0.00 0.00 3.20
3617 3777 3.329225 TGGACTGGGTGTTGACATTGATA 59.671 43.478 0.00 0.00 0.00 2.15
3638 3798 1.134175 AGTTGCCGAACAAAGTTGGTG 59.866 47.619 0.00 0.00 40.82 4.17
3657 3817 6.322456 TCCATCAGGTTTGATAGTAGACAGAG 59.678 42.308 0.00 0.00 42.12 3.35
3659 3819 6.471233 TCCATCAGGTTTGATAGTAGACAG 57.529 41.667 0.00 0.00 42.12 3.51
3665 3825 5.686124 GCTTAGCTCCATCAGGTTTGATAGT 60.686 44.000 0.00 0.00 42.12 2.12
3679 3839 7.829211 AGTTGATAAAACTTATGCTTAGCTCCA 59.171 33.333 5.60 0.00 0.00 3.86
3771 3931 4.072131 TGTAGAACATGAAGGTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
3827 3987 1.760086 AGGGCTCCATGACTCCTCG 60.760 63.158 0.00 0.00 0.00 4.63
3940 4100 2.574369 CCAACTTCCCACATAGGTACCA 59.426 50.000 15.94 0.00 34.66 3.25
3971 4131 1.225704 GCTTCCCAGGATCACCAGG 59.774 63.158 0.00 0.00 41.72 4.45
3972 4132 1.225704 GGCTTCCCAGGATCACCAG 59.774 63.158 0.00 0.00 38.94 4.00
4082 4242 3.251729 CGCCGATCTGGAAATTGATCAAT 59.748 43.478 15.36 15.36 42.00 2.57
4118 4278 1.939934 GCTTCAAAAACCAACCCAAGC 59.060 47.619 0.00 0.00 0.00 4.01
4127 4287 3.392882 CATGGAACCAGCTTCAAAAACC 58.607 45.455 0.00 0.00 0.00 3.27
4161 4321 2.551355 TCGAACTCGAGCTCAAGATG 57.449 50.000 13.61 0.47 44.22 2.90
4181 4341 3.005472 TCACAGAACTAGTTTCCTCCACG 59.995 47.826 10.02 0.00 34.32 4.94
4183 4343 4.039245 CAGTCACAGAACTAGTTTCCTCCA 59.961 45.833 10.02 0.00 34.32 3.86
4262 4422 2.601741 GGATTCGTCGTAAGTAGAGCGG 60.602 54.545 0.00 0.00 39.48 5.52
4280 4440 1.153369 CAGCGTGGGACGAATGGAT 60.153 57.895 0.00 0.00 46.05 3.41
4281 4441 2.264480 CAGCGTGGGACGAATGGA 59.736 61.111 0.00 0.00 46.05 3.41
4296 4456 2.192443 CTCCATGGCAGCCTCCAG 59.808 66.667 14.15 0.00 39.89 3.86
4323 4483 1.606885 GGACGGTTGGGATGGTCGTA 61.607 60.000 0.00 0.00 34.06 3.43
4479 4639 4.021102 TGCCCTGAAAGAGGTAGAAAAG 57.979 45.455 0.00 0.00 40.87 2.27
4572 4732 3.181434 TGGCTTTTCAGTGTCACCCTATT 60.181 43.478 0.00 0.00 0.00 1.73
4597 4757 1.800681 GTCCGGTTATTGCTGTGCC 59.199 57.895 0.00 0.00 0.00 5.01
4601 4761 1.006832 CTTCCGTCCGGTTATTGCTG 58.993 55.000 0.00 0.00 36.47 4.41
4616 4776 7.095187 CCACTAACTGATGTAACAAGAACTTCC 60.095 40.741 0.00 0.00 0.00 3.46
4739 4973 6.151691 ACGAAGGAACACAATGAAAATGATG 58.848 36.000 0.00 0.00 0.00 3.07
4741 4975 5.766150 ACGAAGGAACACAATGAAAATGA 57.234 34.783 0.00 0.00 0.00 2.57
4749 4983 4.712122 ACAAACAACGAAGGAACACAAT 57.288 36.364 0.00 0.00 0.00 2.71
4752 4986 6.033091 CACTTTAACAAACAACGAAGGAACAC 59.967 38.462 0.00 0.00 0.00 3.32
4808 5043 5.760743 GTCACTTATTTTAGATGGAGGGAGC 59.239 44.000 0.00 0.00 0.00 4.70
4825 5060 4.998672 CCGTCCCAAAATAAGTGTCACTTA 59.001 41.667 24.14 24.14 43.95 2.24
4826 5061 3.818773 CCGTCCCAAAATAAGTGTCACTT 59.181 43.478 21.48 21.48 41.97 3.16
4827 5062 3.071892 TCCGTCCCAAAATAAGTGTCACT 59.928 43.478 0.00 0.00 0.00 3.41
4828 5063 3.404899 TCCGTCCCAAAATAAGTGTCAC 58.595 45.455 0.00 0.00 0.00 3.67
4829 5064 3.558321 CCTCCGTCCCAAAATAAGTGTCA 60.558 47.826 0.00 0.00 0.00 3.58
4830 5065 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4831 5066 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4832 5067 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4833 5068 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4834 5069 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4835 5070 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4836 5071 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4837 5072 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4838 5073 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4839 5074 1.252904 CGTACTCCCTCCGTCCCAAA 61.253 60.000 0.00 0.00 0.00 3.28
4840 5075 1.679977 CGTACTCCCTCCGTCCCAA 60.680 63.158 0.00 0.00 0.00 4.12
4841 5076 1.561769 TACGTACTCCCTCCGTCCCA 61.562 60.000 0.00 0.00 36.12 4.37
4842 5077 0.817229 CTACGTACTCCCTCCGTCCC 60.817 65.000 0.00 0.00 36.12 4.46
4843 5078 0.107459 ACTACGTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 36.12 4.79
4844 5079 1.743996 AACTACGTACTCCCTCCGTC 58.256 55.000 0.00 0.00 36.12 4.79
4845 5080 2.027192 TGTAACTACGTACTCCCTCCGT 60.027 50.000 0.00 0.00 38.53 4.69
4846 5081 2.632377 TGTAACTACGTACTCCCTCCG 58.368 52.381 0.00 0.00 0.00 4.63
4847 5082 4.202441 TGATGTAACTACGTACTCCCTCC 58.798 47.826 0.00 0.00 0.00 4.30
4848 5083 5.124457 TGTTGATGTAACTACGTACTCCCTC 59.876 44.000 0.00 0.00 40.05 4.30
4849 5084 5.012239 TGTTGATGTAACTACGTACTCCCT 58.988 41.667 0.00 0.00 40.05 4.20
4850 5085 5.314923 TGTTGATGTAACTACGTACTCCC 57.685 43.478 0.00 0.00 40.05 4.30
4851 5086 6.793349 AGATGTTGATGTAACTACGTACTCC 58.207 40.000 0.00 0.00 40.05 3.85
4852 5087 8.182881 AGAAGATGTTGATGTAACTACGTACTC 58.817 37.037 0.00 0.00 40.05 2.59
4853 5088 8.053026 AGAAGATGTTGATGTAACTACGTACT 57.947 34.615 0.00 0.00 40.05 2.73
4854 5089 8.684973 AAGAAGATGTTGATGTAACTACGTAC 57.315 34.615 0.00 0.00 40.05 3.67
4855 5090 9.135843 CAAAGAAGATGTTGATGTAACTACGTA 57.864 33.333 0.00 0.00 40.05 3.57
4856 5091 7.360101 GCAAAGAAGATGTTGATGTAACTACGT 60.360 37.037 0.00 0.00 40.05 3.57
4883 5118 2.589159 GAGCGAATCGGCTTCCCC 60.589 66.667 4.35 0.00 44.93 4.81
4887 5122 1.142748 CTCCAGAGCGAATCGGCTT 59.857 57.895 4.35 0.00 44.93 4.35
4922 5369 2.124487 AGAGCCTCCTCGTCCTCG 60.124 66.667 0.00 0.00 43.05 4.63
4931 5378 4.959596 GCATCGCGGAGAGCCTCC 62.960 72.222 6.13 10.35 46.44 4.30
4941 5388 4.889856 TCGGTGGATGGCATCGCG 62.890 66.667 20.50 0.00 0.00 5.87
4946 5393 0.605319 GTTCAAGTCGGTGGATGGCA 60.605 55.000 0.00 0.00 0.00 4.92
4954 5401 1.272769 GGACTGCTAGTTCAAGTCGGT 59.727 52.381 9.43 0.00 0.00 4.69
4959 5406 2.544685 CCATCGGACTGCTAGTTCAAG 58.455 52.381 0.00 0.00 0.00 3.02
4969 5416 2.531522 TCATACATGCCATCGGACTG 57.468 50.000 0.00 0.00 0.00 3.51
4992 5439 7.555965 TCATACATGACATAGCATATGGTACC 58.444 38.462 16.51 4.43 0.00 3.34
4993 5440 8.873830 GTTCATACATGACATAGCATATGGTAC 58.126 37.037 16.51 5.55 36.36 3.34
5099 6283 3.947834 GGTTATCCCTCATTTGTCTGTGG 59.052 47.826 0.00 0.00 0.00 4.17
5135 6319 3.244422 CGCTTGGGTATCCTTTGGCTATA 60.244 47.826 0.00 0.00 0.00 1.31
5142 6326 0.743345 GCGACGCTTGGGTATCCTTT 60.743 55.000 13.73 0.00 0.00 3.11
5143 6327 1.153429 GCGACGCTTGGGTATCCTT 60.153 57.895 13.73 0.00 0.00 3.36
5160 6370 0.179124 CTCTGTAACTCGCCCTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
5166 6376 3.492313 CATTTTTGCTCTGTAACTCGCC 58.508 45.455 0.00 0.00 0.00 5.54
5167 6377 3.492313 CCATTTTTGCTCTGTAACTCGC 58.508 45.455 0.00 0.00 0.00 5.03
5168 6378 3.119849 CCCCATTTTTGCTCTGTAACTCG 60.120 47.826 0.00 0.00 0.00 4.18
5169 6379 3.367395 GCCCCATTTTTGCTCTGTAACTC 60.367 47.826 0.00 0.00 0.00 3.01
5170 6380 2.562738 GCCCCATTTTTGCTCTGTAACT 59.437 45.455 0.00 0.00 0.00 2.24
5171 6381 2.671070 CGCCCCATTTTTGCTCTGTAAC 60.671 50.000 0.00 0.00 0.00 2.50
5172 6382 1.543802 CGCCCCATTTTTGCTCTGTAA 59.456 47.619 0.00 0.00 0.00 2.41
5173 6383 1.173043 CGCCCCATTTTTGCTCTGTA 58.827 50.000 0.00 0.00 0.00 2.74
5174 6384 0.827507 ACGCCCCATTTTTGCTCTGT 60.828 50.000 0.00 0.00 0.00 3.41
5176 6386 1.047801 AAACGCCCCATTTTTGCTCT 58.952 45.000 0.00 0.00 0.00 4.09
5177 6387 2.734276 TAAACGCCCCATTTTTGCTC 57.266 45.000 0.00 0.00 0.00 4.26
5178 6388 2.934801 GCATAAACGCCCCATTTTTGCT 60.935 45.455 5.88 0.00 39.47 3.91
5179 6389 1.396648 GCATAAACGCCCCATTTTTGC 59.603 47.619 0.00 0.00 37.02 3.68
5191 6401 3.937062 GCGGCGAGGGCATAAACG 61.937 66.667 12.98 0.00 42.47 3.60
5192 6402 3.583086 GGCGGCGAGGGCATAAAC 61.583 66.667 12.98 0.00 42.47 2.01
5193 6403 4.102815 TGGCGGCGAGGGCATAAA 62.103 61.111 12.98 0.00 42.47 1.40
5214 6424 4.641645 TTCACCCACTGCCGCCAG 62.642 66.667 0.00 0.00 44.80 4.85
5222 6544 2.746472 GCACAGAGAAACTTCACCCACT 60.746 50.000 0.00 0.00 0.00 4.00
5242 6564 1.544314 GGCATGTTCTATCAGGAGGGC 60.544 57.143 0.00 0.00 0.00 5.19
5243 6565 2.053244 AGGCATGTTCTATCAGGAGGG 58.947 52.381 0.00 0.00 0.00 4.30
5293 6623 2.115910 CCACTGCCTCCTTTGCCA 59.884 61.111 0.00 0.00 0.00 4.92
5302 6632 1.456287 GGAAGTTCACCCACTGCCT 59.544 57.895 5.01 0.00 39.31 4.75
5324 6654 5.620738 TCTGCTAGTTCAAATCAGGCTAT 57.379 39.130 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.