Multiple sequence alignment - TraesCS7A01G416300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G416300 chr7A 100.000 5305 0 0 1 5305 608393688 608398992 0.000000e+00 9797
1 TraesCS7A01G416300 chr7A 97.201 643 17 1 3048 3690 118150761 118151402 0.000000e+00 1086
2 TraesCS7A01G416300 chr7A 97.059 646 18 1 3048 3693 319591988 319591344 0.000000e+00 1086
3 TraesCS7A01G416300 chr7A 91.626 203 7 2 542 742 69555901 69555707 6.770000e-69 272
4 TraesCS7A01G416300 chr7D 91.652 2348 85 29 742 3052 528130591 528132864 0.000000e+00 3147
5 TraesCS7A01G416300 chr7D 94.125 1651 56 16 3694 5305 528132887 528134535 0.000000e+00 2473
6 TraesCS7A01G416300 chr7D 97.059 646 18 1 3048 3693 465340559 465339915 0.000000e+00 1086
7 TraesCS7A01G416300 chr7D 97.196 642 17 1 3049 3690 548866635 548867275 0.000000e+00 1085
8 TraesCS7A01G416300 chr7D 87.866 478 35 10 77 543 528130132 528130597 1.680000e-149 540
9 TraesCS7A01G416300 chr7B 92.178 1419 45 17 3950 5305 565908135 565909550 0.000000e+00 1945
10 TraesCS7A01G416300 chr7B 86.178 832 72 21 2189 2998 565906923 565907733 0.000000e+00 859
11 TraesCS7A01G416300 chr7B 77.599 1616 200 78 765 2310 565905096 565906619 0.000000e+00 830
12 TraesCS7A01G416300 chr6A 96.918 649 18 2 3042 3690 270608539 270609185 0.000000e+00 1086
13 TraesCS7A01G416300 chr6A 97.045 643 18 1 3048 3690 410901519 410902160 0.000000e+00 1081
14 TraesCS7A01G416300 chr6A 85.238 210 20 4 538 746 13978652 13978453 6.960000e-49 206
15 TraesCS7A01G416300 chr4D 97.059 646 18 1 3048 3693 242938959 242938315 0.000000e+00 1086
16 TraesCS7A01G416300 chr2A 97.201 643 17 1 3048 3690 578390489 578391130 0.000000e+00 1086
17 TraesCS7A01G416300 chr2A 92.248 129 10 0 611 739 210901230 210901358 3.260000e-42 183
18 TraesCS7A01G416300 chr3B 96.904 646 19 1 3048 3693 439458286 439457642 0.000000e+00 1081
19 TraesCS7A01G416300 chr1A 89.500 200 13 1 542 741 205085939 205086130 4.100000e-61 246
20 TraesCS7A01G416300 chr1A 88.832 197 15 1 542 738 205056684 205056873 8.880000e-58 235
21 TraesCS7A01G416300 chr1A 87.374 198 13 4 542 738 205118964 205119150 3.220000e-52 217
22 TraesCS7A01G416300 chr1A 90.345 145 12 2 601 744 551907070 551907213 7.010000e-44 189
23 TraesCS7A01G416300 chr5B 86.139 202 19 3 540 740 380981351 380981544 5.380000e-50 209
24 TraesCS7A01G416300 chr6D 84.817 191 23 5 544 731 460221661 460221474 2.520000e-43 187
25 TraesCS7A01G416300 chr6D 83.854 192 20 4 550 740 465047692 465047511 7.060000e-39 172
26 TraesCS7A01G416300 chr1D 84.153 183 21 1 558 740 445995001 445994827 2.540000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G416300 chr7A 608393688 608398992 5304 False 9797.000000 9797 100.000000 1 5305 1 chr7A.!!$F2 5304
1 TraesCS7A01G416300 chr7A 118150761 118151402 641 False 1086.000000 1086 97.201000 3048 3690 1 chr7A.!!$F1 642
2 TraesCS7A01G416300 chr7A 319591344 319591988 644 True 1086.000000 1086 97.059000 3048 3693 1 chr7A.!!$R2 645
3 TraesCS7A01G416300 chr7D 528130132 528134535 4403 False 2053.333333 3147 91.214333 77 5305 3 chr7D.!!$F2 5228
4 TraesCS7A01G416300 chr7D 465339915 465340559 644 True 1086.000000 1086 97.059000 3048 3693 1 chr7D.!!$R1 645
5 TraesCS7A01G416300 chr7D 548866635 548867275 640 False 1085.000000 1085 97.196000 3049 3690 1 chr7D.!!$F1 641
6 TraesCS7A01G416300 chr7B 565905096 565909550 4454 False 1211.333333 1945 85.318333 765 5305 3 chr7B.!!$F1 4540
7 TraesCS7A01G416300 chr6A 270608539 270609185 646 False 1086.000000 1086 96.918000 3042 3690 1 chr6A.!!$F1 648
8 TraesCS7A01G416300 chr6A 410901519 410902160 641 False 1081.000000 1081 97.045000 3048 3690 1 chr6A.!!$F2 642
9 TraesCS7A01G416300 chr4D 242938315 242938959 644 True 1086.000000 1086 97.059000 3048 3693 1 chr4D.!!$R1 645
10 TraesCS7A01G416300 chr2A 578390489 578391130 641 False 1086.000000 1086 97.201000 3048 3690 1 chr2A.!!$F2 642
11 TraesCS7A01G416300 chr3B 439457642 439458286 644 True 1081.000000 1081 96.904000 3048 3693 1 chr3B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 750 0.036732 TTCCAAGATTCGCCACTGCT 59.963 50.000 0.00 0.00 34.43 4.24 F
1346 1399 0.033504 TTCACGGAACAGAGGTGCTC 59.966 55.000 0.00 0.00 0.00 4.26 F
1399 1452 1.078918 GCCGGTAGTACCAACCACC 60.079 63.158 19.41 2.86 38.47 4.61 F
2242 2783 2.161855 TCTGCTTTTACATGCCTGTGG 58.838 47.619 4.73 0.00 36.79 4.17 F
3328 3930 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 2867 0.746659 AAGCTTGTTCTGCACCCAAC 59.253 50.000 0.00 0.0 0.00 3.77 R
3242 3844 1.049289 GTCAAGAGAGGGCGGGGTAT 61.049 60.000 0.00 0.0 0.00 2.73 R
3328 3930 4.582656 TCCAACATCGTTTGAGATGGTTTT 59.417 37.500 11.06 0.0 45.46 2.43 R
3832 4438 1.821136 GTTCTCAAATGGGCAGAAGGG 59.179 52.381 0.00 0.0 0.00 3.95 R
4733 5443 2.093235 AGTAACCTGATGCTTCCTCTGC 60.093 50.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.562343 GAGATGGGGGACTAAAACCTC 57.438 52.381 0.00 0.00 0.00 3.85
21 22 2.844348 GAGATGGGGGACTAAAACCTCA 59.156 50.000 0.00 0.00 42.45 3.86
22 23 2.576648 AGATGGGGGACTAAAACCTCAC 59.423 50.000 0.00 0.00 40.72 3.51
23 24 1.822425 TGGGGGACTAAAACCTCACA 58.178 50.000 0.00 0.00 30.70 3.58
24 25 2.354328 TGGGGGACTAAAACCTCACAT 58.646 47.619 0.00 0.00 30.70 3.21
25 26 2.041081 TGGGGGACTAAAACCTCACATG 59.959 50.000 0.00 0.00 30.70 3.21
26 27 2.092323 GGGGACTAAAACCTCACATGC 58.908 52.381 0.00 0.00 0.00 4.06
27 28 2.290960 GGGGACTAAAACCTCACATGCT 60.291 50.000 0.00 0.00 0.00 3.79
28 29 3.010420 GGGACTAAAACCTCACATGCTC 58.990 50.000 0.00 0.00 0.00 4.26
29 30 3.010420 GGACTAAAACCTCACATGCTCC 58.990 50.000 0.00 0.00 0.00 4.70
30 31 3.307762 GGACTAAAACCTCACATGCTCCT 60.308 47.826 0.00 0.00 0.00 3.69
31 32 3.935828 GACTAAAACCTCACATGCTCCTC 59.064 47.826 0.00 0.00 0.00 3.71
32 33 1.813513 AAAACCTCACATGCTCCTCG 58.186 50.000 0.00 0.00 0.00 4.63
33 34 0.976641 AAACCTCACATGCTCCTCGA 59.023 50.000 0.00 0.00 0.00 4.04
34 35 0.247736 AACCTCACATGCTCCTCGAC 59.752 55.000 0.00 0.00 0.00 4.20
35 36 0.900182 ACCTCACATGCTCCTCGACA 60.900 55.000 0.00 0.00 0.00 4.35
36 37 0.463204 CCTCACATGCTCCTCGACAT 59.537 55.000 0.00 0.00 0.00 3.06
38 39 0.176449 TCACATGCTCCTCGACATGG 59.824 55.000 15.64 1.11 46.35 3.66
39 40 1.153289 ACATGCTCCTCGACATGGC 60.153 57.895 15.64 0.00 46.35 4.40
40 41 1.890979 CATGCTCCTCGACATGGCC 60.891 63.158 0.00 0.00 39.98 5.36
41 42 2.369633 ATGCTCCTCGACATGGCCA 61.370 57.895 8.56 8.56 0.00 5.36
42 43 2.202987 GCTCCTCGACATGGCCAG 60.203 66.667 13.05 6.08 0.00 4.85
43 44 2.503061 CTCCTCGACATGGCCAGG 59.497 66.667 17.55 17.55 0.00 4.45
44 45 2.038813 TCCTCGACATGGCCAGGA 59.961 61.111 26.87 11.43 32.30 3.86
45 46 1.383109 TCCTCGACATGGCCAGGAT 60.383 57.895 26.87 8.45 29.57 3.24
46 47 0.982852 TCCTCGACATGGCCAGGATT 60.983 55.000 26.87 1.10 29.57 3.01
47 48 0.758734 CCTCGACATGGCCAGGATTA 59.241 55.000 26.87 7.28 0.00 1.75
48 49 1.140852 CCTCGACATGGCCAGGATTAA 59.859 52.381 26.87 5.39 0.00 1.40
49 50 2.213499 CTCGACATGGCCAGGATTAAC 58.787 52.381 26.87 8.60 0.00 2.01
50 51 1.134220 TCGACATGGCCAGGATTAACC 60.134 52.381 26.87 4.66 39.35 2.85
51 52 1.408127 CGACATGGCCAGGATTAACCA 60.408 52.381 26.87 0.00 42.04 3.67
52 53 2.749466 CGACATGGCCAGGATTAACCAT 60.749 50.000 26.87 0.00 43.70 3.55
53 54 2.887152 GACATGGCCAGGATTAACCATC 59.113 50.000 26.87 4.31 40.95 3.51
54 55 2.244510 ACATGGCCAGGATTAACCATCA 59.755 45.455 26.87 0.00 40.95 3.07
55 56 2.435372 TGGCCAGGATTAACCATCAC 57.565 50.000 0.00 0.00 42.04 3.06
56 57 1.064017 TGGCCAGGATTAACCATCACC 60.064 52.381 0.00 0.00 42.04 4.02
57 58 1.215423 GGCCAGGATTAACCATCACCT 59.785 52.381 0.00 0.00 42.04 4.00
58 59 2.301346 GCCAGGATTAACCATCACCTG 58.699 52.381 0.00 0.00 45.09 4.00
59 60 2.357154 GCCAGGATTAACCATCACCTGT 60.357 50.000 0.00 0.00 44.33 4.00
60 61 3.545703 CCAGGATTAACCATCACCTGTC 58.454 50.000 0.00 0.00 44.33 3.51
61 62 3.198068 CAGGATTAACCATCACCTGTCG 58.802 50.000 0.00 0.00 41.91 4.35
62 63 2.838202 AGGATTAACCATCACCTGTCGT 59.162 45.455 0.00 0.00 42.04 4.34
63 64 3.263425 AGGATTAACCATCACCTGTCGTT 59.737 43.478 0.00 0.00 42.04 3.85
64 65 3.621715 GGATTAACCATCACCTGTCGTTC 59.378 47.826 0.00 0.00 38.79 3.95
65 66 3.755112 TTAACCATCACCTGTCGTTCA 57.245 42.857 0.00 0.00 0.00 3.18
66 67 2.169832 AACCATCACCTGTCGTTCAG 57.830 50.000 4.03 4.03 43.27 3.02
67 68 1.338107 ACCATCACCTGTCGTTCAGA 58.662 50.000 10.79 0.00 46.27 3.27
68 69 1.691976 ACCATCACCTGTCGTTCAGAA 59.308 47.619 10.79 0.00 46.27 3.02
69 70 2.069273 CCATCACCTGTCGTTCAGAAC 58.931 52.381 2.85 2.85 46.27 3.01
70 71 2.289072 CCATCACCTGTCGTTCAGAACT 60.289 50.000 11.60 0.00 46.27 3.01
71 72 2.509052 TCACCTGTCGTTCAGAACTG 57.491 50.000 11.60 5.42 46.27 3.16
72 73 1.068588 TCACCTGTCGTTCAGAACTGG 59.931 52.381 11.60 9.97 46.27 4.00
73 74 1.068588 CACCTGTCGTTCAGAACTGGA 59.931 52.381 11.60 0.00 46.27 3.86
74 75 1.760613 ACCTGTCGTTCAGAACTGGAA 59.239 47.619 11.60 0.00 46.27 3.53
75 76 2.135933 CCTGTCGTTCAGAACTGGAAC 58.864 52.381 11.60 5.19 46.27 3.62
95 96 1.021202 CAAAGGGCGAAGACACACAA 58.979 50.000 0.00 0.00 37.00 3.33
105 106 0.884704 AGACACACAACCACGCCATC 60.885 55.000 0.00 0.00 0.00 3.51
107 108 0.465460 ACACACAACCACGCCATCTT 60.465 50.000 0.00 0.00 0.00 2.40
112 113 1.899814 ACAACCACGCCATCTTCTCTA 59.100 47.619 0.00 0.00 0.00 2.43
123 124 5.303971 GCCATCTTCTCTATGTGTTAGCAT 58.696 41.667 0.00 0.00 0.00 3.79
128 129 6.567959 TCTTCTCTATGTGTTAGCATCACTG 58.432 40.000 7.28 0.00 36.83 3.66
130 131 5.895928 TCTCTATGTGTTAGCATCACTGAC 58.104 41.667 7.28 0.00 36.83 3.51
143 144 4.511454 GCATCACTGACACAAACTTGTAGA 59.489 41.667 0.00 0.00 39.91 2.59
145 146 6.293626 GCATCACTGACACAAACTTGTAGAAT 60.294 38.462 0.00 0.00 39.91 2.40
189 190 1.668294 CACTCTTCACACGCCTCCT 59.332 57.895 0.00 0.00 0.00 3.69
192 193 1.178276 CTCTTCACACGCCTCCTAGT 58.822 55.000 0.00 0.00 0.00 2.57
217 218 1.529826 CCAAAAAGCATAGTCGCGAGC 60.530 52.381 10.24 9.98 36.85 5.03
218 219 1.128507 CAAAAAGCATAGTCGCGAGCA 59.871 47.619 10.24 0.00 36.85 4.26
219 220 0.721718 AAAAGCATAGTCGCGAGCAC 59.278 50.000 10.24 0.00 36.85 4.40
243 244 3.875865 GGACTTATTCCAAGCCGGT 57.124 52.632 1.90 0.00 45.10 5.28
270 271 0.298707 CAATTGTCTCGCCATCGACG 59.701 55.000 0.00 0.00 40.21 5.12
271 272 0.172578 AATTGTCTCGCCATCGACGA 59.827 50.000 0.00 0.00 40.21 4.20
272 273 0.525668 ATTGTCTCGCCATCGACGAC 60.526 55.000 0.00 8.96 40.21 4.34
273 274 1.583495 TTGTCTCGCCATCGACGACT 61.583 55.000 0.00 0.00 40.33 4.18
274 275 0.741927 TGTCTCGCCATCGACGACTA 60.742 55.000 0.00 0.00 40.33 2.59
275 276 0.376152 GTCTCGCCATCGACGACTAA 59.624 55.000 0.00 0.00 40.21 2.24
292 293 7.307573 CGACGACTAAAAGACCCAAAACTTAAT 60.308 37.037 0.00 0.00 0.00 1.40
297 298 9.871175 ACTAAAAGACCCAAAACTTAATCCTAA 57.129 29.630 0.00 0.00 0.00 2.69
299 300 7.534723 AAAGACCCAAAACTTAATCCTAACC 57.465 36.000 0.00 0.00 0.00 2.85
300 301 5.577100 AGACCCAAAACTTAATCCTAACCC 58.423 41.667 0.00 0.00 0.00 4.11
301 302 5.315109 AGACCCAAAACTTAATCCTAACCCT 59.685 40.000 0.00 0.00 0.00 4.34
302 303 6.506413 AGACCCAAAACTTAATCCTAACCCTA 59.494 38.462 0.00 0.00 0.00 3.53
308 309 3.708121 ACTTAATCCTAACCCTACCACCG 59.292 47.826 0.00 0.00 0.00 4.94
323 324 2.496470 ACCACCGCCAAACTAAAAACAA 59.504 40.909 0.00 0.00 0.00 2.83
327 328 3.119566 ACCGCCAAACTAAAAACAACGAA 60.120 39.130 0.00 0.00 0.00 3.85
328 329 3.858238 CCGCCAAACTAAAAACAACGAAA 59.142 39.130 0.00 0.00 0.00 3.46
329 330 4.259490 CCGCCAAACTAAAAACAACGAAAC 60.259 41.667 0.00 0.00 0.00 2.78
346 347 3.839432 CCTTCGCCCCCTCTCGTC 61.839 72.222 0.00 0.00 0.00 4.20
347 348 3.839432 CTTCGCCCCCTCTCGTCC 61.839 72.222 0.00 0.00 0.00 4.79
353 354 3.148279 CCCCTCTCGTCCCCGAAG 61.148 72.222 0.00 0.00 43.69 3.79
394 404 4.680237 CGCAGGCACGAGGGACAA 62.680 66.667 0.00 0.00 34.06 3.18
404 414 1.831736 ACGAGGGACAAGGTAGATTGG 59.168 52.381 0.00 0.00 34.36 3.16
425 435 3.442273 GGGACTATCGCATTCTCTCCTAG 59.558 52.174 0.00 0.00 0.00 3.02
455 465 2.436417 GGTGCAGAAAGATGGCTTGTA 58.564 47.619 0.00 0.00 33.79 2.41
462 472 6.094048 TGCAGAAAGATGGCTTGTAGAATAAC 59.906 38.462 0.00 0.00 33.79 1.89
526 536 3.263425 AGAAGGCACGGGAATAGAAGAAA 59.737 43.478 0.00 0.00 0.00 2.52
546 556 1.429463 AAAAAGACTACGAGGCAGCG 58.571 50.000 0.00 0.00 37.29 5.18
547 557 0.389948 AAAAGACTACGAGGCAGCGG 60.390 55.000 4.86 0.00 35.12 5.52
548 558 2.837371 AAAGACTACGAGGCAGCGGC 62.837 60.000 0.00 0.00 40.13 6.53
551 561 4.492160 CTACGAGGCAGCGGCGAA 62.492 66.667 12.98 0.00 42.47 4.70
552 562 3.774959 CTACGAGGCAGCGGCGAAT 62.775 63.158 12.98 0.00 42.47 3.34
553 563 3.768185 TACGAGGCAGCGGCGAATC 62.768 63.158 12.98 0.00 42.47 2.52
554 564 4.880537 CGAGGCAGCGGCGAATCT 62.881 66.667 12.98 0.95 42.47 2.40
555 565 2.417516 GAGGCAGCGGCGAATCTA 59.582 61.111 12.98 0.00 42.47 1.98
556 566 1.663074 GAGGCAGCGGCGAATCTAG 60.663 63.158 12.98 0.00 42.47 2.43
557 567 3.341835 GGCAGCGGCGAATCTAGC 61.342 66.667 12.98 3.98 42.47 3.42
558 568 2.586079 GCAGCGGCGAATCTAGCA 60.586 61.111 12.98 0.00 36.08 3.49
559 569 2.593134 GCAGCGGCGAATCTAGCAG 61.593 63.158 12.98 0.00 36.08 4.24
560 570 1.953138 CAGCGGCGAATCTAGCAGG 60.953 63.158 12.98 0.00 36.08 4.85
561 571 2.663188 GCGGCGAATCTAGCAGGG 60.663 66.667 12.98 0.00 36.08 4.45
562 572 2.029666 CGGCGAATCTAGCAGGGG 59.970 66.667 0.00 0.00 36.08 4.79
563 573 2.427753 GGCGAATCTAGCAGGGGG 59.572 66.667 0.00 0.00 36.08 5.40
631 641 9.729281 TGGGAAAGAAAAATTACTAGTATTCGT 57.271 29.630 2.79 0.35 0.00 3.85
660 670 8.925700 CAAATTTTTGACCTTATTTGGACTAGC 58.074 33.333 0.00 0.00 40.55 3.42
661 671 5.873179 TTTTGACCTTATTTGGACTAGCG 57.127 39.130 0.00 0.00 0.00 4.26
662 672 4.811969 TTGACCTTATTTGGACTAGCGA 57.188 40.909 0.00 0.00 0.00 4.93
663 673 4.811969 TGACCTTATTTGGACTAGCGAA 57.188 40.909 0.00 0.00 0.00 4.70
664 674 5.353394 TGACCTTATTTGGACTAGCGAAT 57.647 39.130 0.00 0.00 0.00 3.34
665 675 5.741011 TGACCTTATTTGGACTAGCGAATT 58.259 37.500 0.00 0.00 0.00 2.17
666 676 6.880484 TGACCTTATTTGGACTAGCGAATTA 58.120 36.000 0.00 0.00 0.00 1.40
667 677 7.332557 TGACCTTATTTGGACTAGCGAATTAA 58.667 34.615 0.00 0.00 0.00 1.40
668 678 7.825270 TGACCTTATTTGGACTAGCGAATTAAA 59.175 33.333 0.00 0.00 0.00 1.52
669 679 8.570068 ACCTTATTTGGACTAGCGAATTAAAA 57.430 30.769 0.00 0.00 0.00 1.52
670 680 8.674607 ACCTTATTTGGACTAGCGAATTAAAAG 58.325 33.333 0.00 0.00 0.00 2.27
671 681 8.674607 CCTTATTTGGACTAGCGAATTAAAAGT 58.325 33.333 0.00 0.00 0.00 2.66
675 685 9.758651 ATTTGGACTAGCGAATTAAAAGTTTTT 57.241 25.926 6.10 0.00 0.00 1.94
705 715 8.850454 TTTTCTACACACAATTAACTTTGAGC 57.150 30.769 0.00 0.00 0.00 4.26
706 716 6.554334 TCTACACACAATTAACTTTGAGCC 57.446 37.500 0.00 0.00 0.00 4.70
707 717 6.296026 TCTACACACAATTAACTTTGAGCCT 58.704 36.000 0.00 0.00 0.00 4.58
708 718 5.852282 ACACACAATTAACTTTGAGCCTT 57.148 34.783 0.00 0.00 0.00 4.35
709 719 5.831997 ACACACAATTAACTTTGAGCCTTC 58.168 37.500 0.00 0.00 0.00 3.46
710 720 5.221244 ACACACAATTAACTTTGAGCCTTCC 60.221 40.000 0.00 0.00 0.00 3.46
711 721 4.280929 ACACAATTAACTTTGAGCCTTCCC 59.719 41.667 0.00 0.00 0.00 3.97
712 722 4.524328 CACAATTAACTTTGAGCCTTCCCT 59.476 41.667 0.00 0.00 0.00 4.20
713 723 5.011023 CACAATTAACTTTGAGCCTTCCCTT 59.989 40.000 0.00 0.00 0.00 3.95
714 724 5.243954 ACAATTAACTTTGAGCCTTCCCTTC 59.756 40.000 0.00 0.00 0.00 3.46
715 725 4.447138 TTAACTTTGAGCCTTCCCTTCA 57.553 40.909 0.00 0.00 0.00 3.02
716 726 3.532641 AACTTTGAGCCTTCCCTTCAT 57.467 42.857 0.00 0.00 0.00 2.57
717 727 3.532641 ACTTTGAGCCTTCCCTTCATT 57.467 42.857 0.00 0.00 0.00 2.57
718 728 3.849527 ACTTTGAGCCTTCCCTTCATTT 58.150 40.909 0.00 0.00 0.00 2.32
719 729 4.226384 ACTTTGAGCCTTCCCTTCATTTT 58.774 39.130 0.00 0.00 0.00 1.82
720 730 4.281941 ACTTTGAGCCTTCCCTTCATTTTC 59.718 41.667 0.00 0.00 0.00 2.29
721 731 3.814504 TGAGCCTTCCCTTCATTTTCT 57.185 42.857 0.00 0.00 0.00 2.52
722 732 4.118168 TGAGCCTTCCCTTCATTTTCTT 57.882 40.909 0.00 0.00 0.00 2.52
723 733 4.082125 TGAGCCTTCCCTTCATTTTCTTC 58.918 43.478 0.00 0.00 0.00 2.87
724 734 3.435275 AGCCTTCCCTTCATTTTCTTCC 58.565 45.455 0.00 0.00 0.00 3.46
725 735 3.165071 GCCTTCCCTTCATTTTCTTCCA 58.835 45.455 0.00 0.00 0.00 3.53
726 736 3.578282 GCCTTCCCTTCATTTTCTTCCAA 59.422 43.478 0.00 0.00 0.00 3.53
727 737 4.322273 GCCTTCCCTTCATTTTCTTCCAAG 60.322 45.833 0.00 0.00 0.00 3.61
728 738 5.079643 CCTTCCCTTCATTTTCTTCCAAGA 58.920 41.667 0.00 0.00 0.00 3.02
729 739 5.718607 CCTTCCCTTCATTTTCTTCCAAGAT 59.281 40.000 0.00 0.00 34.49 2.40
730 740 6.212187 CCTTCCCTTCATTTTCTTCCAAGATT 59.788 38.462 0.00 0.00 34.49 2.40
731 741 6.840780 TCCCTTCATTTTCTTCCAAGATTC 57.159 37.500 0.00 0.00 34.49 2.52
732 742 5.415701 TCCCTTCATTTTCTTCCAAGATTCG 59.584 40.000 0.00 0.00 34.49 3.34
733 743 5.098211 CCTTCATTTTCTTCCAAGATTCGC 58.902 41.667 0.00 0.00 34.49 4.70
734 744 4.701956 TCATTTTCTTCCAAGATTCGCC 57.298 40.909 0.00 0.00 34.49 5.54
735 745 4.078537 TCATTTTCTTCCAAGATTCGCCA 58.921 39.130 0.00 0.00 34.49 5.69
736 746 3.915437 TTTTCTTCCAAGATTCGCCAC 57.085 42.857 0.00 0.00 34.49 5.01
737 747 2.859165 TTCTTCCAAGATTCGCCACT 57.141 45.000 0.00 0.00 34.49 4.00
738 748 2.099141 TCTTCCAAGATTCGCCACTG 57.901 50.000 0.00 0.00 0.00 3.66
739 749 0.449388 CTTCCAAGATTCGCCACTGC 59.551 55.000 0.00 0.00 0.00 4.40
740 750 0.036732 TTCCAAGATTCGCCACTGCT 59.963 50.000 0.00 0.00 34.43 4.24
749 759 4.082523 GCCACTGCTACGAGGCCA 62.083 66.667 5.01 0.00 41.25 5.36
778 788 7.391148 TTTTGCTAGGTAGAAAACATGATCC 57.609 36.000 0.00 0.00 30.72 3.36
780 790 4.721776 TGCTAGGTAGAAAACATGATCCCT 59.278 41.667 0.00 0.99 0.00 4.20
784 794 7.256332 GCTAGGTAGAAAACATGATCCCTATCA 60.256 40.741 0.00 0.00 46.01 2.15
813 823 8.034215 TGATCAGAAACTTTCACACACAAAAAT 58.966 29.630 4.34 0.00 0.00 1.82
844 854 6.196571 GGTTATTTTCTACACACACACACAC 58.803 40.000 0.00 0.00 0.00 3.82
846 856 4.671880 TTTTCTACACACACACACACAC 57.328 40.909 0.00 0.00 0.00 3.82
847 857 3.320673 TTCTACACACACACACACACA 57.679 42.857 0.00 0.00 0.00 3.72
848 858 2.612604 TCTACACACACACACACACAC 58.387 47.619 0.00 0.00 0.00 3.82
849 859 2.028930 TCTACACACACACACACACACA 60.029 45.455 0.00 0.00 0.00 3.72
850 860 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
851 861 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
852 862 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
853 863 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
854 864 0.250510 ACACACACACACACACACCA 60.251 50.000 0.00 0.00 0.00 4.17
855 865 0.877743 CACACACACACACACACCAA 59.122 50.000 0.00 0.00 0.00 3.67
856 866 1.135717 CACACACACACACACACCAAG 60.136 52.381 0.00 0.00 0.00 3.61
898 908 2.027745 CCATCCAGAGCAGCCGTATTAT 60.028 50.000 0.00 0.00 0.00 1.28
934 951 1.912110 GTATTTATAGAGCGCGCTCGG 59.088 52.381 44.71 2.91 46.90 4.63
935 952 0.388649 ATTTATAGAGCGCGCTCGGG 60.389 55.000 44.71 2.08 46.90 5.14
957 974 3.782244 CTGCTCACGCTCGGTTGC 61.782 66.667 0.00 0.00 36.97 4.17
1041 1062 3.015753 GAACCCCACTCCTCCCCC 61.016 72.222 0.00 0.00 0.00 5.40
1055 1076 4.150454 CCCCCGCTCCTCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
1295 1342 4.555262 CTCCGCTCAATTATTCCTCTCTC 58.445 47.826 0.00 0.00 0.00 3.20
1308 1355 2.826287 CTCTCGCCTCCGCTCTCA 60.826 66.667 0.00 0.00 0.00 3.27
1322 1369 2.597520 GCTCTCACTTCTCGTGTTACC 58.402 52.381 0.00 0.00 44.16 2.85
1346 1399 0.033504 TTCACGGAACAGAGGTGCTC 59.966 55.000 0.00 0.00 0.00 4.26
1399 1452 1.078918 GCCGGTAGTACCAACCACC 60.079 63.158 19.41 2.86 38.47 4.61
1440 1494 4.800249 GCAATTGCAAACTTGAGGGATTGA 60.800 41.667 25.36 0.00 41.59 2.57
1489 1543 3.242903 CCAATATGCGGCATAAACAACGA 60.243 43.478 24.94 3.52 29.74 3.85
1490 1544 4.346970 CAATATGCGGCATAAACAACGAA 58.653 39.130 24.94 2.77 29.74 3.85
1491 1545 4.829064 ATATGCGGCATAAACAACGAAT 57.171 36.364 24.94 5.11 29.74 3.34
1492 1546 2.999507 TGCGGCATAAACAACGAATT 57.000 40.000 0.00 0.00 0.00 2.17
1530 1592 3.452627 AGGAGCTTTAGGGACTGTATGTG 59.547 47.826 0.00 0.00 41.52 3.21
1531 1593 3.198872 GAGCTTTAGGGACTGTATGTGC 58.801 50.000 0.00 0.00 41.52 4.57
1566 1633 9.349713 ACAAGAACAGTGGAAACTAATAAATGA 57.650 29.630 0.00 0.00 0.00 2.57
1590 1657 5.489792 TCTCTGTAGCTCTTCAATTTGGT 57.510 39.130 0.00 0.00 0.00 3.67
1604 1671 9.403583 TCTTCAATTTGGTAACTAACTTGTCTT 57.596 29.630 0.00 0.00 33.08 3.01
1608 1675 9.878599 CAATTTGGTAACTAACTTGTCTTACAG 57.121 33.333 0.00 0.00 33.08 2.74
1657 1724 3.604875 TCAACTCTTAACGGGACATCC 57.395 47.619 0.00 0.00 0.00 3.51
1680 1747 5.925969 CCGTAACAGATTTCCTTTGCAAAAT 59.074 36.000 13.84 3.42 0.00 1.82
1702 1794 3.745332 TGCGCATCATTTGTAAGTGAG 57.255 42.857 5.66 0.00 0.00 3.51
1704 1796 3.750652 TGCGCATCATTTGTAAGTGAGAA 59.249 39.130 5.66 0.00 0.00 2.87
1718 1810 7.279615 TGTAAGTGAGAACTTCAGGATTTCAA 58.720 34.615 0.00 0.00 36.21 2.69
1815 1907 4.034048 CCATTCTAGGTTTTGGAATCGACG 59.966 45.833 0.00 0.00 0.00 5.12
1914 2006 7.012327 TCCTGTTGTAATTTGACTCTTGAACTG 59.988 37.037 0.00 0.00 0.00 3.16
1954 2046 7.319646 GCTACTCTAGTTCTCCATCCATATTG 58.680 42.308 0.00 0.00 0.00 1.90
1966 2058 8.501904 TCTCCATCCATATTGATTTACTTCCAA 58.498 33.333 0.00 0.00 0.00 3.53
1980 2072 4.918810 ACTTCCAAGTTGCAAGTTAAGG 57.081 40.909 23.81 19.60 35.21 2.69
1990 2082 4.481930 TGCAAGTTAAGGTTTGACATCG 57.518 40.909 0.00 0.00 0.00 3.84
2087 2179 4.222810 AGAAAGTTGCTGGAAAGGTTTGTT 59.777 37.500 0.00 0.00 0.00 2.83
2088 2180 5.420739 AGAAAGTTGCTGGAAAGGTTTGTTA 59.579 36.000 0.00 0.00 0.00 2.41
2089 2181 5.669164 AAGTTGCTGGAAAGGTTTGTTAA 57.331 34.783 0.00 0.00 0.00 2.01
2090 2182 5.006153 AGTTGCTGGAAAGGTTTGTTAAC 57.994 39.130 0.00 0.00 0.00 2.01
2091 2183 4.709886 AGTTGCTGGAAAGGTTTGTTAACT 59.290 37.500 7.22 0.00 34.59 2.24
2092 2184 4.647424 TGCTGGAAAGGTTTGTTAACTG 57.353 40.909 7.22 0.00 34.59 3.16
2093 2185 4.020543 TGCTGGAAAGGTTTGTTAACTGT 58.979 39.130 7.22 0.00 34.59 3.55
2094 2186 4.464597 TGCTGGAAAGGTTTGTTAACTGTT 59.535 37.500 7.22 0.00 34.59 3.16
2125 2217 7.222805 TGTTTTACAGAGCTCAGCTATTTATCG 59.777 37.037 17.77 0.00 39.88 2.92
2130 2223 6.595716 ACAGAGCTCAGCTATTTATCGTTTTT 59.404 34.615 17.77 0.00 39.88 1.94
2218 2757 4.385146 CGCTGTCATCAGAGCATATAGTTG 59.615 45.833 0.00 0.00 43.76 3.16
2240 2781 3.341823 CTCTCTGCTTTTACATGCCTGT 58.658 45.455 0.00 0.00 39.49 4.00
2241 2782 3.076621 TCTCTGCTTTTACATGCCTGTG 58.923 45.455 4.73 0.00 36.79 3.66
2242 2783 2.161855 TCTGCTTTTACATGCCTGTGG 58.838 47.619 4.73 0.00 36.79 4.17
2285 2826 5.163683 CCAGAATATCAAAGTGCTGGAGTTG 60.164 44.000 0.00 0.00 44.27 3.16
2396 2946 3.084786 AGTTGGTCAAGCCTAATTCTGC 58.915 45.455 0.00 0.00 38.35 4.26
2556 3117 4.442472 GCAATGAGGCCAATCATTTAGCTT 60.442 41.667 15.68 0.00 45.44 3.74
2768 3329 2.951642 TCAGAAACTGTTTGAAGCTGGG 59.048 45.455 11.03 0.00 32.61 4.45
2769 3330 2.689983 CAGAAACTGTTTGAAGCTGGGT 59.310 45.455 11.03 0.00 0.00 4.51
2771 3332 4.338118 CAGAAACTGTTTGAAGCTGGGTAA 59.662 41.667 11.03 0.00 0.00 2.85
2788 3349 5.856156 TGGGTAACTTGTCGTTTTAGATGA 58.144 37.500 0.00 0.00 37.05 2.92
2790 3351 6.370442 TGGGTAACTTGTCGTTTTAGATGATG 59.630 38.462 0.00 0.00 37.05 3.07
2925 3486 7.466804 AGGTGAGGGTGTCTAATTTTTCATTA 58.533 34.615 0.00 0.00 0.00 1.90
2951 3512 6.261603 TGGTCTATTGATGCATCTGATTTCAC 59.738 38.462 26.32 13.75 0.00 3.18
3165 3767 4.660938 AAGCTTCCACGCACCCCC 62.661 66.667 0.00 0.00 0.00 5.40
3210 3812 2.907892 ACTCCAATCCTTCAGGTCTCA 58.092 47.619 0.00 0.00 36.34 3.27
3242 3844 2.841266 TCCTCCCATGTCAAATTCGGTA 59.159 45.455 0.00 0.00 0.00 4.02
3328 3930 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36
3397 3999 6.377712 GCTACCCCAACTCTATCTCGTATATT 59.622 42.308 0.00 0.00 0.00 1.28
3565 4167 9.052759 CCTGTAGAACTTGTCTTTTAGCTTTTA 57.947 33.333 0.00 0.00 37.84 1.52
3672 4274 3.095163 CCCCATCCTCCTGCAGCT 61.095 66.667 8.66 0.00 0.00 4.24
3690 4292 2.025321 AGCTTTGACCCCAAATACCGAT 60.025 45.455 0.00 0.00 41.03 4.18
3697 4299 4.717778 TGACCCCAAATACCGATAGAAGAA 59.282 41.667 0.00 0.00 39.76 2.52
3748 4350 8.309656 CACTATTTATGATGAGCTCATGTAGGA 58.690 37.037 33.33 16.06 44.48 2.94
3779 4382 3.316588 TGCTGAAAGAAATGTTAACGCCA 59.683 39.130 0.26 0.00 34.07 5.69
3832 4438 1.376812 CCCTTCGCAACTACCACCC 60.377 63.158 0.00 0.00 0.00 4.61
3908 4519 6.092670 GCATTTACTCTGTGATAAACTGCTCA 59.907 38.462 0.00 0.00 30.55 4.26
4114 4762 1.630369 CTGAATCAGGAACCCAGGTCA 59.370 52.381 1.53 0.00 0.00 4.02
4119 4767 0.322008 CAGGAACCCAGGTCAAGAGC 60.322 60.000 0.00 0.00 0.00 4.09
4130 4794 3.718723 AGGTCAAGAGCTGAGTTAGGAT 58.281 45.455 0.29 0.00 37.82 3.24
4227 4891 9.605275 TTATAGGATCATTCTCACTGAAACAAG 57.395 33.333 0.00 0.00 38.29 3.16
4264 4928 2.113807 TCTGTGAGACCCCTGATGATG 58.886 52.381 0.00 0.00 0.00 3.07
4284 4948 6.585416 TGATGCAAGTAGTGATGTGTATCAT 58.415 36.000 0.00 0.00 44.62 2.45
4403 5087 1.670015 CTCTGCTCACTGCTGACCA 59.330 57.895 0.00 0.00 43.20 4.02
4466 5150 4.848357 AGATTGTGCCCTATATATGCCAC 58.152 43.478 0.00 0.00 0.00 5.01
4534 5219 3.681593 TCCCATTTTTCATGCAAGTGG 57.318 42.857 10.39 10.39 0.00 4.00
4535 5220 2.971330 TCCCATTTTTCATGCAAGTGGT 59.029 40.909 14.16 0.00 0.00 4.16
4555 5240 8.788325 AGTGGTTAACCTGACATATTTCTTAC 57.212 34.615 24.78 9.63 36.82 2.34
4586 5285 2.442236 AAAGGATCGGCCATCAATGT 57.558 45.000 2.24 0.00 40.02 2.71
4596 5306 3.305267 CGGCCATCAATGTTTTCACTCAA 60.305 43.478 2.24 0.00 0.00 3.02
4650 5360 0.812014 TTTCTGCACCGCGTTCAGAA 60.812 50.000 22.41 22.41 42.10 3.02
4663 5373 3.005554 CGTTCAGAAGGCATCAGACATT 58.994 45.455 0.00 0.00 0.00 2.71
4674 5384 5.814783 GGCATCAGACATTAAAGTGATGAC 58.185 41.667 13.90 8.13 46.15 3.06
4712 5422 6.982160 AATAATAGCTTGGGATTCATGCAA 57.018 33.333 0.00 0.00 45.61 4.08
4733 5443 6.091437 GCAAATCTGAAGAATTTCCTCACAG 58.909 40.000 0.00 0.00 32.09 3.66
4892 5602 6.114187 ACAGAACACTACTGATCCAATGAA 57.886 37.500 0.00 0.00 38.55 2.57
4943 5653 0.833287 ATCTACAACATCCTGGCGCT 59.167 50.000 7.64 0.00 0.00 5.92
5247 5958 4.138290 CCTGTACAACCAACATAACACCA 58.862 43.478 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.844348 TGAGGTTTTAGTCCCCCATCTC 59.156 50.000 0.00 0.00 0.00 2.75
3 4 2.354328 TGTGAGGTTTTAGTCCCCCAT 58.646 47.619 0.00 0.00 0.00 4.00
4 5 1.822425 TGTGAGGTTTTAGTCCCCCA 58.178 50.000 0.00 0.00 0.00 4.96
6 7 2.092323 GCATGTGAGGTTTTAGTCCCC 58.908 52.381 0.00 0.00 0.00 4.81
7 8 3.010420 GAGCATGTGAGGTTTTAGTCCC 58.990 50.000 0.00 0.00 0.00 4.46
8 9 3.010420 GGAGCATGTGAGGTTTTAGTCC 58.990 50.000 0.00 0.00 0.00 3.85
9 10 3.935828 GAGGAGCATGTGAGGTTTTAGTC 59.064 47.826 0.00 0.00 0.00 2.59
10 11 3.617531 CGAGGAGCATGTGAGGTTTTAGT 60.618 47.826 0.00 0.00 0.00 2.24
11 12 2.932614 CGAGGAGCATGTGAGGTTTTAG 59.067 50.000 0.00 0.00 0.00 1.85
12 13 2.565391 TCGAGGAGCATGTGAGGTTTTA 59.435 45.455 0.00 0.00 0.00 1.52
13 14 1.347707 TCGAGGAGCATGTGAGGTTTT 59.652 47.619 0.00 0.00 0.00 2.43
14 15 0.976641 TCGAGGAGCATGTGAGGTTT 59.023 50.000 0.00 0.00 0.00 3.27
15 16 0.247736 GTCGAGGAGCATGTGAGGTT 59.752 55.000 0.00 0.00 0.00 3.50
16 17 0.900182 TGTCGAGGAGCATGTGAGGT 60.900 55.000 0.00 0.00 0.00 3.85
17 18 0.463204 ATGTCGAGGAGCATGTGAGG 59.537 55.000 0.00 0.00 0.00 3.86
18 19 1.568606 CATGTCGAGGAGCATGTGAG 58.431 55.000 5.75 0.00 38.06 3.51
19 20 0.176449 CCATGTCGAGGAGCATGTGA 59.824 55.000 11.46 0.00 40.42 3.58
20 21 1.434622 GCCATGTCGAGGAGCATGTG 61.435 60.000 11.46 5.76 40.42 3.21
21 22 1.153289 GCCATGTCGAGGAGCATGT 60.153 57.895 11.46 0.00 40.42 3.21
22 23 1.890979 GGCCATGTCGAGGAGCATG 60.891 63.158 0.00 6.73 41.37 4.06
23 24 2.321263 CTGGCCATGTCGAGGAGCAT 62.321 60.000 5.51 0.00 0.00 3.79
24 25 3.002583 TGGCCATGTCGAGGAGCA 61.003 61.111 0.00 0.00 0.00 4.26
25 26 2.202987 CTGGCCATGTCGAGGAGC 60.203 66.667 5.51 0.00 0.00 4.70
26 27 1.406065 ATCCTGGCCATGTCGAGGAG 61.406 60.000 13.11 0.00 42.84 3.69
27 28 0.982852 AATCCTGGCCATGTCGAGGA 60.983 55.000 10.06 10.06 43.54 3.71
28 29 0.758734 TAATCCTGGCCATGTCGAGG 59.241 55.000 5.51 2.15 33.80 4.63
29 30 2.213499 GTTAATCCTGGCCATGTCGAG 58.787 52.381 5.51 0.00 0.00 4.04
30 31 1.134220 GGTTAATCCTGGCCATGTCGA 60.134 52.381 5.51 0.00 0.00 4.20
31 32 1.308998 GGTTAATCCTGGCCATGTCG 58.691 55.000 5.51 0.00 0.00 4.35
32 33 2.435372 TGGTTAATCCTGGCCATGTC 57.565 50.000 5.51 0.00 37.07 3.06
33 34 2.244510 TGATGGTTAATCCTGGCCATGT 59.755 45.455 5.51 0.00 41.33 3.21
34 35 2.624838 GTGATGGTTAATCCTGGCCATG 59.375 50.000 5.51 2.84 41.33 3.66
35 36 2.424812 GGTGATGGTTAATCCTGGCCAT 60.425 50.000 5.51 2.83 43.65 4.40
36 37 1.064017 GGTGATGGTTAATCCTGGCCA 60.064 52.381 4.71 4.71 34.00 5.36
37 38 1.215423 AGGTGATGGTTAATCCTGGCC 59.785 52.381 0.00 0.00 34.00 5.36
38 39 2.301346 CAGGTGATGGTTAATCCTGGC 58.699 52.381 0.00 0.00 41.10 4.85
39 40 3.545703 GACAGGTGATGGTTAATCCTGG 58.454 50.000 12.95 0.00 46.71 4.45
41 42 2.838202 ACGACAGGTGATGGTTAATCCT 59.162 45.455 0.00 0.00 34.00 3.24
42 43 3.261981 ACGACAGGTGATGGTTAATCC 57.738 47.619 0.00 0.00 34.00 3.01
43 44 4.250464 TGAACGACAGGTGATGGTTAATC 58.750 43.478 0.00 0.00 35.67 1.75
44 45 4.020573 TCTGAACGACAGGTGATGGTTAAT 60.021 41.667 12.50 0.00 45.76 1.40
45 46 3.322541 TCTGAACGACAGGTGATGGTTAA 59.677 43.478 12.50 0.00 45.76 2.01
46 47 2.894765 TCTGAACGACAGGTGATGGTTA 59.105 45.455 12.50 0.00 45.76 2.85
47 48 1.691976 TCTGAACGACAGGTGATGGTT 59.308 47.619 12.50 0.00 45.76 3.67
48 49 1.338107 TCTGAACGACAGGTGATGGT 58.662 50.000 12.50 0.00 45.76 3.55
49 50 2.069273 GTTCTGAACGACAGGTGATGG 58.931 52.381 4.57 0.00 45.76 3.51
50 51 2.733552 CAGTTCTGAACGACAGGTGATG 59.266 50.000 14.35 1.17 45.76 3.07
51 52 2.289072 CCAGTTCTGAACGACAGGTGAT 60.289 50.000 14.35 0.00 45.76 3.06
52 53 1.068588 CCAGTTCTGAACGACAGGTGA 59.931 52.381 14.35 0.59 45.76 4.02
53 54 1.068588 TCCAGTTCTGAACGACAGGTG 59.931 52.381 14.35 6.57 45.76 4.00
54 55 1.410004 TCCAGTTCTGAACGACAGGT 58.590 50.000 14.35 0.00 45.76 4.00
55 56 2.135933 GTTCCAGTTCTGAACGACAGG 58.864 52.381 14.35 14.20 45.76 4.00
56 57 2.135933 GGTTCCAGTTCTGAACGACAG 58.864 52.381 14.35 6.62 46.97 3.51
57 58 1.483004 TGGTTCCAGTTCTGAACGACA 59.517 47.619 14.35 6.38 42.36 4.35
58 59 2.234300 TGGTTCCAGTTCTGAACGAC 57.766 50.000 14.35 11.41 42.36 4.34
59 60 2.992124 TTGGTTCCAGTTCTGAACGA 57.008 45.000 14.35 4.65 42.36 3.85
60 61 2.290641 CCTTTGGTTCCAGTTCTGAACG 59.709 50.000 14.35 9.53 42.36 3.95
61 62 2.623416 CCCTTTGGTTCCAGTTCTGAAC 59.377 50.000 12.54 12.54 41.05 3.18
62 63 2.944129 CCCTTTGGTTCCAGTTCTGAA 58.056 47.619 1.00 0.00 0.00 3.02
63 64 1.478654 GCCCTTTGGTTCCAGTTCTGA 60.479 52.381 1.00 0.00 0.00 3.27
64 65 0.961753 GCCCTTTGGTTCCAGTTCTG 59.038 55.000 0.00 0.00 0.00 3.02
65 66 0.537371 CGCCCTTTGGTTCCAGTTCT 60.537 55.000 0.00 0.00 0.00 3.01
66 67 0.536460 TCGCCCTTTGGTTCCAGTTC 60.536 55.000 0.00 0.00 0.00 3.01
67 68 0.106419 TTCGCCCTTTGGTTCCAGTT 60.106 50.000 0.00 0.00 0.00 3.16
68 69 0.537371 CTTCGCCCTTTGGTTCCAGT 60.537 55.000 0.00 0.00 0.00 4.00
69 70 0.250727 TCTTCGCCCTTTGGTTCCAG 60.251 55.000 0.00 0.00 0.00 3.86
70 71 0.536460 GTCTTCGCCCTTTGGTTCCA 60.536 55.000 0.00 0.00 0.00 3.53
71 72 0.536460 TGTCTTCGCCCTTTGGTTCC 60.536 55.000 0.00 0.00 0.00 3.62
72 73 0.591659 GTGTCTTCGCCCTTTGGTTC 59.408 55.000 0.00 0.00 0.00 3.62
73 74 0.106918 TGTGTCTTCGCCCTTTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
74 75 0.818040 GTGTGTCTTCGCCCTTTGGT 60.818 55.000 0.00 0.00 0.00 3.67
75 76 0.817634 TGTGTGTCTTCGCCCTTTGG 60.818 55.000 0.00 0.00 0.00 3.28
95 96 2.111384 ACATAGAGAAGATGGCGTGGT 58.889 47.619 0.00 0.00 0.00 4.16
105 106 6.475076 GTCAGTGATGCTAACACATAGAGAAG 59.525 42.308 0.00 0.00 40.25 2.85
107 108 5.418840 TGTCAGTGATGCTAACACATAGAGA 59.581 40.000 0.00 0.00 40.25 3.10
112 113 4.006780 TGTGTCAGTGATGCTAACACAT 57.993 40.909 8.65 0.00 43.70 3.21
123 124 8.725405 TTTATTCTACAAGTTTGTGTCAGTGA 57.275 30.769 7.73 0.00 42.31 3.41
151 152 2.109834 TGGTGTGTCCCCTGAATTTGAT 59.890 45.455 0.00 0.00 34.77 2.57
158 159 0.399949 AAGAGTGGTGTGTCCCCTGA 60.400 55.000 0.00 0.00 34.77 3.86
159 160 0.035458 GAAGAGTGGTGTGTCCCCTG 59.965 60.000 0.00 0.00 34.77 4.45
160 161 0.399949 TGAAGAGTGGTGTGTCCCCT 60.400 55.000 0.00 0.00 34.77 4.79
207 208 1.154282 CAACTCGTGCTCGCGACTA 60.154 57.895 3.71 0.00 36.80 2.59
209 210 3.470567 CCAACTCGTGCTCGCGAC 61.471 66.667 3.71 2.83 36.80 5.19
270 271 8.405418 AGGATTAAGTTTTGGGTCTTTTAGTC 57.595 34.615 0.00 0.00 0.00 2.59
271 272 9.871175 TTAGGATTAAGTTTTGGGTCTTTTAGT 57.129 29.630 0.00 0.00 0.00 2.24
273 274 9.081204 GGTTAGGATTAAGTTTTGGGTCTTTTA 57.919 33.333 0.00 0.00 0.00 1.52
274 275 7.015877 GGGTTAGGATTAAGTTTTGGGTCTTTT 59.984 37.037 0.00 0.00 0.00 2.27
275 276 6.495872 GGGTTAGGATTAAGTTTTGGGTCTTT 59.504 38.462 0.00 0.00 0.00 2.52
292 293 1.686800 GGCGGTGGTAGGGTTAGGA 60.687 63.158 0.00 0.00 0.00 2.94
297 298 0.837260 TAGTTTGGCGGTGGTAGGGT 60.837 55.000 0.00 0.00 0.00 4.34
298 299 0.325602 TTAGTTTGGCGGTGGTAGGG 59.674 55.000 0.00 0.00 0.00 3.53
299 300 2.188062 TTTAGTTTGGCGGTGGTAGG 57.812 50.000 0.00 0.00 0.00 3.18
300 301 3.315749 TGTTTTTAGTTTGGCGGTGGTAG 59.684 43.478 0.00 0.00 0.00 3.18
301 302 3.285484 TGTTTTTAGTTTGGCGGTGGTA 58.715 40.909 0.00 0.00 0.00 3.25
302 303 2.100989 TGTTTTTAGTTTGGCGGTGGT 58.899 42.857 0.00 0.00 0.00 4.16
308 309 4.865925 AGGTTTCGTTGTTTTTAGTTTGGC 59.134 37.500 0.00 0.00 0.00 4.52
327 328 3.391382 CGAGAGGGGGCGAAGGTT 61.391 66.667 0.00 0.00 0.00 3.50
328 329 4.698625 ACGAGAGGGGGCGAAGGT 62.699 66.667 0.00 0.00 0.00 3.50
329 330 3.839432 GACGAGAGGGGGCGAAGG 61.839 72.222 0.00 0.00 0.00 3.46
346 347 4.530857 CCGCCTGCTACTTCGGGG 62.531 72.222 0.00 0.00 38.35 5.73
347 348 3.432051 CTCCGCCTGCTACTTCGGG 62.432 68.421 0.00 0.00 41.98 5.14
349 350 2.105128 CCTCCGCCTGCTACTTCG 59.895 66.667 0.00 0.00 0.00 3.79
353 354 2.442272 TCTCCCTCCGCCTGCTAC 60.442 66.667 0.00 0.00 0.00 3.58
380 381 1.229082 TACCTTGTCCCTCGTGCCT 60.229 57.895 0.00 0.00 0.00 4.75
394 404 2.958818 TGCGATAGTCCCAATCTACCT 58.041 47.619 0.00 0.00 39.35 3.08
404 414 3.442273 CCTAGGAGAGAATGCGATAGTCC 59.558 52.174 1.05 0.00 39.35 3.85
425 435 2.862674 TTTCTGCACCCGCGATACCC 62.863 60.000 8.23 0.00 42.97 3.69
534 544 3.774959 ATTCGCCGCTGCCTCGTAG 62.775 63.158 7.81 0.00 0.00 3.51
535 545 3.768185 GATTCGCCGCTGCCTCGTA 62.768 63.158 7.81 0.15 0.00 3.43
538 548 1.663074 CTAGATTCGCCGCTGCCTC 60.663 63.158 0.00 0.00 0.00 4.70
539 549 2.419198 CTAGATTCGCCGCTGCCT 59.581 61.111 0.00 0.00 0.00 4.75
540 550 3.341835 GCTAGATTCGCCGCTGCC 61.342 66.667 0.00 0.00 0.00 4.85
541 551 2.586079 TGCTAGATTCGCCGCTGC 60.586 61.111 0.00 0.00 0.00 5.25
542 552 1.953138 CCTGCTAGATTCGCCGCTG 60.953 63.158 0.00 0.00 0.00 5.18
543 553 2.419198 CCTGCTAGATTCGCCGCT 59.581 61.111 0.00 0.00 0.00 5.52
544 554 2.663188 CCCTGCTAGATTCGCCGC 60.663 66.667 0.00 0.00 0.00 6.53
545 555 2.029666 CCCCTGCTAGATTCGCCG 59.970 66.667 0.00 0.00 0.00 6.46
546 556 2.427753 CCCCCTGCTAGATTCGCC 59.572 66.667 0.00 0.00 0.00 5.54
560 570 4.475135 GAGCCTGTCGAAGCCCCC 62.475 72.222 0.00 0.00 0.00 5.40
605 615 9.729281 ACGAATACTAGTAATTTTTCTTTCCCA 57.271 29.630 6.70 0.00 0.00 4.37
634 644 8.925700 GCTAGTCCAAATAAGGTCAAAAATTTG 58.074 33.333 0.00 0.00 38.47 2.32
635 645 7.812669 CGCTAGTCCAAATAAGGTCAAAAATTT 59.187 33.333 0.00 0.00 0.00 1.82
636 646 7.175990 TCGCTAGTCCAAATAAGGTCAAAAATT 59.824 33.333 0.00 0.00 0.00 1.82
637 647 6.657541 TCGCTAGTCCAAATAAGGTCAAAAAT 59.342 34.615 0.00 0.00 0.00 1.82
638 648 5.998981 TCGCTAGTCCAAATAAGGTCAAAAA 59.001 36.000 0.00 0.00 0.00 1.94
639 649 5.553123 TCGCTAGTCCAAATAAGGTCAAAA 58.447 37.500 0.00 0.00 0.00 2.44
640 650 5.155278 TCGCTAGTCCAAATAAGGTCAAA 57.845 39.130 0.00 0.00 0.00 2.69
641 651 4.811969 TCGCTAGTCCAAATAAGGTCAA 57.188 40.909 0.00 0.00 0.00 3.18
642 652 4.811969 TTCGCTAGTCCAAATAAGGTCA 57.188 40.909 0.00 0.00 0.00 4.02
643 653 7.781548 TTAATTCGCTAGTCCAAATAAGGTC 57.218 36.000 0.00 0.00 0.00 3.85
644 654 8.570068 TTTTAATTCGCTAGTCCAAATAAGGT 57.430 30.769 0.00 0.00 0.00 3.50
645 655 8.674607 ACTTTTAATTCGCTAGTCCAAATAAGG 58.325 33.333 0.00 0.00 0.00 2.69
649 659 9.758651 AAAAACTTTTAATTCGCTAGTCCAAAT 57.241 25.926 0.00 0.00 0.00 2.32
679 689 9.296400 GCTCAAAGTTAATTGTGTGTAGAAAAA 57.704 29.630 0.00 0.00 0.00 1.94
680 690 7.918562 GGCTCAAAGTTAATTGTGTGTAGAAAA 59.081 33.333 0.00 0.00 0.00 2.29
681 691 7.284489 AGGCTCAAAGTTAATTGTGTGTAGAAA 59.716 33.333 0.00 0.00 0.00 2.52
682 692 6.770785 AGGCTCAAAGTTAATTGTGTGTAGAA 59.229 34.615 0.00 0.00 0.00 2.10
683 693 6.296026 AGGCTCAAAGTTAATTGTGTGTAGA 58.704 36.000 0.00 0.00 0.00 2.59
684 694 6.560253 AGGCTCAAAGTTAATTGTGTGTAG 57.440 37.500 0.00 0.00 0.00 2.74
685 695 6.016610 GGAAGGCTCAAAGTTAATTGTGTGTA 60.017 38.462 0.00 0.00 0.00 2.90
686 696 5.221244 GGAAGGCTCAAAGTTAATTGTGTGT 60.221 40.000 0.00 0.00 0.00 3.72
687 697 5.222631 GGAAGGCTCAAAGTTAATTGTGTG 58.777 41.667 0.00 0.00 0.00 3.82
688 698 4.280929 GGGAAGGCTCAAAGTTAATTGTGT 59.719 41.667 0.00 0.00 0.00 3.72
689 699 4.524328 AGGGAAGGCTCAAAGTTAATTGTG 59.476 41.667 0.00 0.00 0.00 3.33
690 700 4.740902 AGGGAAGGCTCAAAGTTAATTGT 58.259 39.130 0.00 0.00 0.00 2.71
691 701 5.243730 TGAAGGGAAGGCTCAAAGTTAATTG 59.756 40.000 0.00 0.00 0.00 2.32
692 702 5.393866 TGAAGGGAAGGCTCAAAGTTAATT 58.606 37.500 0.00 0.00 0.00 1.40
693 703 4.998051 TGAAGGGAAGGCTCAAAGTTAAT 58.002 39.130 0.00 0.00 0.00 1.40
694 704 4.447138 TGAAGGGAAGGCTCAAAGTTAA 57.553 40.909 0.00 0.00 0.00 2.01
695 705 4.657814 ATGAAGGGAAGGCTCAAAGTTA 57.342 40.909 0.00 0.00 0.00 2.24
696 706 3.532641 ATGAAGGGAAGGCTCAAAGTT 57.467 42.857 0.00 0.00 0.00 2.66
697 707 3.532641 AATGAAGGGAAGGCTCAAAGT 57.467 42.857 0.00 0.00 0.00 2.66
698 708 4.525874 AGAAAATGAAGGGAAGGCTCAAAG 59.474 41.667 0.00 0.00 0.00 2.77
699 709 4.482990 AGAAAATGAAGGGAAGGCTCAAA 58.517 39.130 0.00 0.00 0.00 2.69
700 710 4.118168 AGAAAATGAAGGGAAGGCTCAA 57.882 40.909 0.00 0.00 0.00 3.02
701 711 3.814504 AGAAAATGAAGGGAAGGCTCA 57.185 42.857 0.00 0.00 0.00 4.26
702 712 3.445450 GGAAGAAAATGAAGGGAAGGCTC 59.555 47.826 0.00 0.00 0.00 4.70
703 713 3.181418 TGGAAGAAAATGAAGGGAAGGCT 60.181 43.478 0.00 0.00 0.00 4.58
704 714 3.165071 TGGAAGAAAATGAAGGGAAGGC 58.835 45.455 0.00 0.00 0.00 4.35
705 715 5.079643 TCTTGGAAGAAAATGAAGGGAAGG 58.920 41.667 0.00 0.00 30.73 3.46
706 716 6.847421 ATCTTGGAAGAAAATGAAGGGAAG 57.153 37.500 0.00 0.00 38.77 3.46
707 717 6.071952 CGAATCTTGGAAGAAAATGAAGGGAA 60.072 38.462 0.00 0.00 38.77 3.97
708 718 5.415701 CGAATCTTGGAAGAAAATGAAGGGA 59.584 40.000 0.00 0.00 38.77 4.20
709 719 5.644644 CGAATCTTGGAAGAAAATGAAGGG 58.355 41.667 0.00 0.00 38.77 3.95
710 720 5.098211 GCGAATCTTGGAAGAAAATGAAGG 58.902 41.667 0.00 0.00 38.77 3.46
711 721 5.098211 GGCGAATCTTGGAAGAAAATGAAG 58.902 41.667 0.00 0.00 38.77 3.02
712 722 4.522405 TGGCGAATCTTGGAAGAAAATGAA 59.478 37.500 0.00 0.00 38.77 2.57
713 723 4.078537 TGGCGAATCTTGGAAGAAAATGA 58.921 39.130 0.00 0.00 38.77 2.57
714 724 4.082571 AGTGGCGAATCTTGGAAGAAAATG 60.083 41.667 0.00 0.00 38.77 2.32
715 725 4.082125 AGTGGCGAATCTTGGAAGAAAAT 58.918 39.130 0.00 0.00 38.77 1.82
716 726 3.253188 CAGTGGCGAATCTTGGAAGAAAA 59.747 43.478 0.00 0.00 38.77 2.29
717 727 2.813754 CAGTGGCGAATCTTGGAAGAAA 59.186 45.455 0.00 0.00 38.77 2.52
718 728 2.426522 CAGTGGCGAATCTTGGAAGAA 58.573 47.619 0.00 0.00 38.77 2.52
719 729 1.945819 GCAGTGGCGAATCTTGGAAGA 60.946 52.381 0.00 0.00 39.78 2.87
720 730 0.449388 GCAGTGGCGAATCTTGGAAG 59.551 55.000 0.00 0.00 0.00 3.46
721 731 2.555123 GCAGTGGCGAATCTTGGAA 58.445 52.632 0.00 0.00 0.00 3.53
722 732 4.301505 GCAGTGGCGAATCTTGGA 57.698 55.556 0.00 0.00 0.00 3.53
732 742 4.082523 TGGCCTCGTAGCAGTGGC 62.083 66.667 3.32 10.24 46.68 5.01
733 743 2.125512 GTGGCCTCGTAGCAGTGG 60.126 66.667 3.32 0.00 0.00 4.00
734 744 1.153745 GAGTGGCCTCGTAGCAGTG 60.154 63.158 3.32 0.00 0.00 3.66
735 745 0.972983 ATGAGTGGCCTCGTAGCAGT 60.973 55.000 3.32 0.00 40.85 4.40
736 746 0.176680 AATGAGTGGCCTCGTAGCAG 59.823 55.000 3.32 0.00 40.85 4.24
737 747 0.613260 AAATGAGTGGCCTCGTAGCA 59.387 50.000 3.32 0.00 40.85 3.49
738 748 1.398390 CAAAATGAGTGGCCTCGTAGC 59.602 52.381 3.32 0.00 40.85 3.58
739 749 1.398390 GCAAAATGAGTGGCCTCGTAG 59.602 52.381 3.32 0.00 40.85 3.51
740 750 1.003118 AGCAAAATGAGTGGCCTCGTA 59.997 47.619 3.32 0.00 40.85 3.43
749 759 7.665559 TCATGTTTTCTACCTAGCAAAATGAGT 59.334 33.333 0.00 0.00 0.00 3.41
778 788 7.767659 TGTGAAAGTTTCTGATCAGATGATAGG 59.232 37.037 25.64 0.00 37.29 2.57
780 790 8.096414 TGTGTGAAAGTTTCTGATCAGATGATA 58.904 33.333 25.64 8.51 37.29 2.15
784 794 6.057533 TGTGTGTGAAAGTTTCTGATCAGAT 58.942 36.000 25.64 10.86 37.29 2.90
813 823 5.536538 TGTGTGTAGAAAATAACCCATGCAA 59.463 36.000 0.00 0.00 0.00 4.08
844 854 6.098679 TCAAAGATTTTTCTTGGTGTGTGTG 58.901 36.000 0.00 0.00 0.00 3.82
846 856 7.593875 TTTCAAAGATTTTTCTTGGTGTGTG 57.406 32.000 0.00 0.00 0.00 3.82
847 857 8.791327 ATTTTCAAAGATTTTTCTTGGTGTGT 57.209 26.923 0.00 0.00 0.00 3.72
1041 1062 1.827789 CAGGAGAGGAGAGGAGCGG 60.828 68.421 0.00 0.00 0.00 5.52
1042 1063 2.489275 GCAGGAGAGGAGAGGAGCG 61.489 68.421 0.00 0.00 0.00 5.03
1043 1064 1.076044 AGCAGGAGAGGAGAGGAGC 60.076 63.158 0.00 0.00 0.00 4.70
1044 1065 0.468029 GGAGCAGGAGAGGAGAGGAG 60.468 65.000 0.00 0.00 0.00 3.69
1045 1066 1.618030 GGAGCAGGAGAGGAGAGGA 59.382 63.158 0.00 0.00 0.00 3.71
1046 1067 1.457455 GGGAGCAGGAGAGGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
1047 1068 1.827789 CGGGAGCAGGAGAGGAGAG 60.828 68.421 0.00 0.00 0.00 3.20
1048 1069 2.277072 CGGGAGCAGGAGAGGAGA 59.723 66.667 0.00 0.00 0.00 3.71
1049 1070 1.827789 CTCGGGAGCAGGAGAGGAG 60.828 68.421 0.00 0.00 31.90 3.69
1295 1342 2.202676 GAAGTGAGAGCGGAGGCG 60.203 66.667 0.00 0.00 46.35 5.52
1308 1355 4.569564 GTGAACAAAGGTAACACGAGAAGT 59.430 41.667 0.00 0.00 41.41 3.01
1346 1399 3.649277 CTCCTCGCCACCAACTCCG 62.649 68.421 0.00 0.00 0.00 4.63
1399 1452 0.716108 GCAACCGATGAACGAGACTG 59.284 55.000 0.00 0.00 45.77 3.51
1440 1494 6.321815 ATCCAATGGATTGCGATCATTCGAT 61.322 40.000 9.36 12.56 43.07 3.59
1530 1592 5.001232 TCCACTGTTCTTGTGTATTTAGGC 58.999 41.667 0.00 0.00 33.92 3.93
1531 1593 7.228706 AGTTTCCACTGTTCTTGTGTATTTAGG 59.771 37.037 0.00 0.00 33.92 2.69
1566 1633 6.479884 ACCAAATTGAAGAGCTACAGAGATT 58.520 36.000 0.00 0.00 0.00 2.40
1573 1640 8.549338 AGTTAGTTACCAAATTGAAGAGCTAC 57.451 34.615 0.00 0.00 0.00 3.58
1657 1724 7.406799 AATTTTGCAAAGGAAATCTGTTACG 57.593 32.000 12.41 0.00 0.00 3.18
1680 1747 4.215185 TCTCACTTACAAATGATGCGCAAA 59.785 37.500 17.11 6.35 0.00 3.68
1685 1752 6.902341 TGAAGTTCTCACTTACAAATGATGC 58.098 36.000 4.17 0.00 43.79 3.91
1691 1758 7.773224 TGAAATCCTGAAGTTCTCACTTACAAA 59.227 33.333 4.17 0.00 43.79 2.83
1702 1794 6.207614 AGGCTTAAGTTGAAATCCTGAAGTTC 59.792 38.462 4.02 0.00 0.00 3.01
1704 1796 5.635120 AGGCTTAAGTTGAAATCCTGAAGT 58.365 37.500 4.02 0.00 0.00 3.01
1815 1907 1.154197 GTACGAGCACAAGAAACCCC 58.846 55.000 0.00 0.00 0.00 4.95
1966 2058 5.505654 CGATGTCAAACCTTAACTTGCAACT 60.506 40.000 0.00 0.00 0.00 3.16
1980 2072 4.095410 TGAATTGCATCCGATGTCAAAC 57.905 40.909 16.81 14.59 32.82 2.93
2087 2179 8.726870 AGCTCTGTAAAACAGTTAAACAGTTA 57.273 30.769 19.91 7.84 46.03 2.24
2088 2180 7.335924 TGAGCTCTGTAAAACAGTTAAACAGTT 59.664 33.333 16.19 11.64 46.03 3.16
2089 2181 6.821665 TGAGCTCTGTAAAACAGTTAAACAGT 59.178 34.615 16.19 7.91 46.03 3.55
2090 2182 7.246674 TGAGCTCTGTAAAACAGTTAAACAG 57.753 36.000 16.19 16.71 46.03 3.16
2091 2183 6.238374 GCTGAGCTCTGTAAAACAGTTAAACA 60.238 38.462 20.24 0.00 46.03 2.83
2092 2184 6.017852 AGCTGAGCTCTGTAAAACAGTTAAAC 60.018 38.462 20.24 0.66 46.03 2.01
2093 2185 6.055588 AGCTGAGCTCTGTAAAACAGTTAAA 58.944 36.000 20.24 0.00 46.03 1.52
2094 2186 5.611374 AGCTGAGCTCTGTAAAACAGTTAA 58.389 37.500 20.24 0.00 46.03 2.01
2172 2265 3.055312 GTGGAACTAAGGGAACAGGGTAG 60.055 52.174 0.00 0.00 0.00 3.18
2218 2757 2.097142 CAGGCATGTAAAAGCAGAGAGC 59.903 50.000 0.00 0.00 46.19 4.09
2240 2781 2.306847 GGTGAAAAGCCTGAGAAACCA 58.693 47.619 0.00 0.00 0.00 3.67
2241 2782 1.613925 GGGTGAAAAGCCTGAGAAACC 59.386 52.381 0.00 0.00 0.00 3.27
2242 2783 1.613925 GGGGTGAAAAGCCTGAGAAAC 59.386 52.381 0.00 0.00 0.00 2.78
2326 2867 0.746659 AAGCTTGTTCTGCACCCAAC 59.253 50.000 0.00 0.00 0.00 3.77
2396 2946 3.935203 ACAAGAGTAAATGCTGGATCACG 59.065 43.478 0.00 0.00 0.00 4.35
2439 2989 9.513727 ACAACAATTTCATGGTTTTAAAATTGC 57.486 25.926 19.85 0.00 45.96 3.56
2556 3117 2.112279 AGGGTGTAACTGGGACTCAA 57.888 50.000 0.00 0.00 36.74 3.02
2768 3329 7.268447 GCAACATCATCTAAAACGACAAGTTAC 59.732 37.037 0.00 0.00 43.37 2.50
2769 3330 7.172532 AGCAACATCATCTAAAACGACAAGTTA 59.827 33.333 0.00 0.00 43.37 2.24
2771 3332 5.470098 AGCAACATCATCTAAAACGACAAGT 59.530 36.000 0.00 0.00 0.00 3.16
2788 3349 4.122046 GCCAAACTTTCTTTGAGCAACAT 58.878 39.130 0.00 0.00 0.00 2.71
2790 3351 2.866156 GGCCAAACTTTCTTTGAGCAAC 59.134 45.455 0.00 0.00 31.67 4.17
2925 3486 7.002276 TGAAATCAGATGCATCAATAGACCAT 58.998 34.615 27.81 9.83 0.00 3.55
2951 3512 3.808728 TCAAGTGTGGGACTGAAAGAAG 58.191 45.455 0.00 0.00 37.43 2.85
3165 3767 4.063689 CACCAAAGAGCTAGCTATGGATG 58.936 47.826 33.71 25.99 32.26 3.51
3166 3768 3.969976 TCACCAAAGAGCTAGCTATGGAT 59.030 43.478 33.71 21.79 32.26 3.41
3210 3812 1.831736 CATGGGAGGAGTCCGTTAAGT 59.168 52.381 2.76 0.00 45.05 2.24
3242 3844 1.049289 GTCAAGAGAGGGCGGGGTAT 61.049 60.000 0.00 0.00 0.00 2.73
3328 3930 4.582656 TCCAACATCGTTTGAGATGGTTTT 59.417 37.500 11.06 0.00 45.46 2.43
3565 4167 1.973515 TCTGTGACAAGAGAGTGCCAT 59.026 47.619 0.00 0.00 0.00 4.40
3646 4248 3.531059 CAGGAGGATGGGGGTATTGATA 58.469 50.000 0.00 0.00 0.00 2.15
3672 4274 5.190132 TCTTCTATCGGTATTTGGGGTCAAA 59.810 40.000 0.00 0.00 45.61 2.69
3690 4292 6.544928 TGTGGTCATTAGCAGATTCTTCTA 57.455 37.500 0.00 0.00 32.75 2.10
3697 4299 4.337555 GCTTCAATGTGGTCATTAGCAGAT 59.662 41.667 9.43 0.00 41.50 2.90
3748 4350 5.362263 ACATTTCTTTCAGCAGCAAAATGT 58.638 33.333 0.00 5.66 40.56 2.71
3779 4382 6.769822 CCTCTCTGCTGAATACCAACATAAAT 59.230 38.462 0.00 0.00 0.00 1.40
3832 4438 1.821136 GTTCTCAAATGGGCAGAAGGG 59.179 52.381 0.00 0.00 0.00 3.95
4114 4762 3.019799 TCGGATCCTAACTCAGCTCTT 57.980 47.619 10.75 0.00 0.00 2.85
4119 4767 5.010516 ACTGATGAATCGGATCCTAACTCAG 59.989 44.000 10.75 15.09 36.97 3.35
4227 4891 7.008810 GTCTCACAGAAGAGATTGTATTCGAAC 59.991 40.741 0.00 0.00 45.61 3.95
4292 4956 6.674694 TCATCTCAATTCTAGCAGAAAAGC 57.325 37.500 3.27 0.00 37.82 3.51
4403 5087 8.275187 TGATGATAGGGATGTTAATGGTAGTT 57.725 34.615 0.00 0.00 0.00 2.24
4466 5150 7.784176 CAGAAAATTGCTGATGTTCTTTTCTG 58.216 34.615 16.49 16.49 45.97 3.02
4555 5240 3.485877 GCCGATCCTTTTCGACATTTCTG 60.486 47.826 0.00 0.00 41.62 3.02
4569 5261 2.442236 AAACATTGATGGCCGATCCT 57.558 45.000 0.00 0.00 35.26 3.24
4570 5262 2.426738 TGAAAACATTGATGGCCGATCC 59.573 45.455 0.00 0.00 0.00 3.36
4571 5263 3.129287 AGTGAAAACATTGATGGCCGATC 59.871 43.478 0.00 3.10 0.00 3.69
4586 5285 4.695396 ACAGCATTTGCATTGAGTGAAAA 58.305 34.783 5.20 0.00 45.16 2.29
4596 5306 5.761234 ACAGAATTTGAAACAGCATTTGCAT 59.239 32.000 5.20 0.00 45.16 3.96
4650 5360 5.587844 GTCATCACTTTAATGTCTGATGCCT 59.412 40.000 13.13 0.00 39.84 4.75
4663 5373 3.788227 ACCCTGCAAGTCATCACTTTA 57.212 42.857 0.00 0.00 41.24 1.85
4712 5422 5.319453 TGCTGTGAGGAAATTCTTCAGATT 58.681 37.500 8.09 0.00 32.96 2.40
4733 5443 2.093235 AGTAACCTGATGCTTCCTCTGC 60.093 50.000 0.00 0.00 0.00 4.26
4943 5653 3.240134 GACCGGAGAAGGCTGTGCA 62.240 63.158 9.46 0.00 33.69 4.57
5247 5958 7.763985 GCACATATTTTTGCCCTAATAACTGTT 59.236 33.333 0.00 0.00 32.21 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.