Multiple sequence alignment - TraesCS7A01G416200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G416200 chr7A 100.000 5844 0 0 1 5844 608365220 608359377 0.000000e+00 10792.0
1 TraesCS7A01G416200 chr7A 98.967 581 2 4 2111 2687 574084607 574084027 0.000000e+00 1037.0
2 TraesCS7A01G416200 chr7A 98.267 577 6 4 2111 2683 540870958 540870382 0.000000e+00 1007.0
3 TraesCS7A01G416200 chr7A 87.895 190 22 1 405 594 353071890 353071702 7.620000e-54 222.0
4 TraesCS7A01G416200 chr7A 96.364 55 2 0 5141 5195 608360132 608360078 2.240000e-14 91.6
5 TraesCS7A01G416200 chr7D 94.983 2392 88 14 977 3350 528084991 528082614 0.000000e+00 3723.0
6 TraesCS7A01G416200 chr7D 88.407 1846 141 32 3335 5144 528082566 528080758 0.000000e+00 2156.0
7 TraesCS7A01G416200 chr7D 96.034 706 22 4 5141 5844 528080810 528080109 0.000000e+00 1144.0
8 TraesCS7A01G416200 chr7D 94.619 669 31 4 1 667 528102190 528101525 0.000000e+00 1031.0
9 TraesCS7A01G416200 chr7D 93.750 64 1 2 860 922 528100982 528100921 6.240000e-15 93.5
10 TraesCS7A01G416200 chr7B 91.419 1888 131 17 2836 4706 565580460 565578587 0.000000e+00 2560.0
11 TraesCS7A01G416200 chr7B 92.923 1187 63 14 939 2112 565582272 565581094 0.000000e+00 1707.0
12 TraesCS7A01G416200 chr7B 90.455 681 37 13 5177 5844 565577948 565577283 0.000000e+00 872.0
13 TraesCS7A01G416200 chr7B 85.950 242 32 2 83 323 565772287 565772047 2.090000e-64 257.0
14 TraesCS7A01G416200 chr7B 86.008 243 30 4 83 323 565817164 565816924 2.090000e-64 257.0
15 TraesCS7A01G416200 chr7B 89.005 191 18 3 405 594 42668860 42668672 3.520000e-57 233.0
16 TraesCS7A01G416200 chr7B 88.660 194 18 4 402 594 557446909 557447099 3.520000e-57 233.0
17 TraesCS7A01G416200 chr7B 77.083 384 38 29 4728 5095 565578449 565578100 6.020000e-40 176.0
18 TraesCS7A01G416200 chr7B 85.185 135 4 1 2700 2834 565581089 565580971 2.210000e-24 124.0
19 TraesCS7A01G416200 chr3A 98.454 582 1 5 2111 2688 45583043 45582466 0.000000e+00 1018.0
20 TraesCS7A01G416200 chr3A 97.942 583 8 4 2111 2689 197199786 197199204 0.000000e+00 1007.0
21 TraesCS7A01G416200 chr3A 94.643 168 9 0 678 845 91121772 91121939 1.620000e-65 261.0
22 TraesCS7A01G416200 chr2A 97.759 580 8 5 2112 2687 494154496 494155074 0.000000e+00 994.0
23 TraesCS7A01G416200 chr2A 93.143 175 12 0 675 849 250729537 250729711 2.090000e-64 257.0
24 TraesCS7A01G416200 chr2A 79.424 243 38 11 5582 5818 660224292 660224056 1.690000e-35 161.0
25 TraesCS7A01G416200 chr2D 95.017 582 20 5 2112 2689 625181637 625182213 0.000000e+00 905.0
26 TraesCS7A01G416200 chr2D 89.062 192 16 5 405 594 317234720 317234532 3.520000e-57 233.0
27 TraesCS7A01G416200 chr2D 80.247 243 36 11 5582 5818 516370689 516370453 7.790000e-39 172.0
28 TraesCS7A01G416200 chr2D 95.604 91 3 1 5007 5096 204499053 204498963 1.700000e-30 145.0
29 TraesCS7A01G416200 chr3D 94.314 510 20 4 2178 2686 370120971 370120470 0.000000e+00 773.0
30 TraesCS7A01G416200 chr3D 95.767 378 8 3 2318 2694 434026381 434026011 2.330000e-168 603.0
31 TraesCS7A01G416200 chr3D 97.170 212 3 3 2112 2320 434026674 434026463 7.200000e-94 355.0
32 TraesCS7A01G416200 chr3D 94.643 168 9 0 678 845 569577162 569577329 1.620000e-65 261.0
33 TraesCS7A01G416200 chr3D 94.118 170 10 0 678 847 612710149 612709980 5.810000e-65 259.0
34 TraesCS7A01G416200 chr3D 92.857 98 4 3 5000 5095 35660598 35660694 7.900000e-29 139.0
35 TraesCS7A01G416200 chr5A 94.857 175 8 1 676 849 82305595 82305769 7.460000e-69 272.0
36 TraesCS7A01G416200 chr3B 95.294 170 8 0 679 848 723498045 723497876 2.680000e-68 270.0
37 TraesCS7A01G416200 chr2B 94.798 173 8 1 681 853 624373254 624373425 9.650000e-68 268.0
38 TraesCS7A01G416200 chr2B 79.424 243 38 11 5582 5818 607953486 607953250 1.690000e-35 161.0
39 TraesCS7A01G416200 chr2B 95.833 96 2 2 5000 5095 258656173 258656080 2.820000e-33 154.0
40 TraesCS7A01G416200 chr4A 95.706 163 7 0 682 844 87406090 87406252 4.490000e-66 263.0
41 TraesCS7A01G416200 chr6D 95.152 165 8 0 682 846 24998196 24998360 1.620000e-65 261.0
42 TraesCS7A01G416200 chr6D 85.000 240 30 6 5582 5818 330157370 330157606 7.570000e-59 239.0
43 TraesCS7A01G416200 chr6D 94.624 93 5 0 5003 5095 63710379 63710471 1.700000e-30 145.0
44 TraesCS7A01G416200 chr6A 85.062 241 28 8 5582 5818 469432089 469432325 7.570000e-59 239.0
45 TraesCS7A01G416200 chr6A 88.144 194 20 3 402 594 607089169 607089360 1.640000e-55 228.0
46 TraesCS7A01G416200 chr6A 88.144 194 20 3 402 594 607224355 607224546 1.640000e-55 228.0
47 TraesCS7A01G416200 chr6A 89.143 175 15 3 5645 5817 570382350 570382522 1.280000e-51 215.0
48 TraesCS7A01G416200 chr6A 89.720 107 8 3 5004 5107 99206768 99206874 3.670000e-27 134.0
49 TraesCS7A01G416200 chr6B 84.167 240 32 6 5582 5818 490255889 490255653 1.640000e-55 228.0
50 TraesCS7A01G416200 chr1A 88.421 190 21 1 405 594 441604851 441604663 1.640000e-55 228.0
51 TraesCS7A01G416200 chr1A 91.346 104 5 4 4981 5083 335544612 335544512 7.900000e-29 139.0
52 TraesCS7A01G416200 chr1B 87.895 190 22 1 405 594 242744591 242744403 7.620000e-54 222.0
53 TraesCS7A01G416200 chr1B 94.565 92 4 1 5004 5095 629262090 629262000 2.200000e-29 141.0
54 TraesCS7A01G416200 chr1D 87.952 83 7 3 2112 2191 33580760 33580678 1.730000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G416200 chr7A 608359377 608365220 5843 True 10792.00 10792 100.000000 1 5844 1 chr7A.!!$R4 5843
1 TraesCS7A01G416200 chr7A 574084027 574084607 580 True 1037.00 1037 98.967000 2111 2687 1 chr7A.!!$R3 576
2 TraesCS7A01G416200 chr7A 540870382 540870958 576 True 1007.00 1007 98.267000 2111 2683 1 chr7A.!!$R2 572
3 TraesCS7A01G416200 chr7D 528080109 528084991 4882 True 2341.00 3723 93.141333 977 5844 3 chr7D.!!$R1 4867
4 TraesCS7A01G416200 chr7D 528100921 528102190 1269 True 562.25 1031 94.184500 1 922 2 chr7D.!!$R2 921
5 TraesCS7A01G416200 chr7B 565577283 565582272 4989 True 1087.80 2560 87.413000 939 5844 5 chr7B.!!$R4 4905
6 TraesCS7A01G416200 chr3A 45582466 45583043 577 True 1018.00 1018 98.454000 2111 2688 1 chr3A.!!$R1 577
7 TraesCS7A01G416200 chr3A 197199204 197199786 582 True 1007.00 1007 97.942000 2111 2689 1 chr3A.!!$R2 578
8 TraesCS7A01G416200 chr2A 494154496 494155074 578 False 994.00 994 97.759000 2112 2687 1 chr2A.!!$F2 575
9 TraesCS7A01G416200 chr2D 625181637 625182213 576 False 905.00 905 95.017000 2112 2689 1 chr2D.!!$F1 577
10 TraesCS7A01G416200 chr3D 370120470 370120971 501 True 773.00 773 94.314000 2178 2686 1 chr3D.!!$R1 508
11 TraesCS7A01G416200 chr3D 434026011 434026674 663 True 479.00 603 96.468500 2112 2694 2 chr3D.!!$R3 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 698 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.0 0.0 0.0 0.00 3.62 F
1509 1515 0.529992 CGCCGAGTGGTAAGATTCCC 60.530 60.0 0.0 0.0 37.67 3.97 F
1804 1830 1.229428 AATTGCCGATGATGCGTAGG 58.771 50.0 0.0 0.0 0.00 3.18 F
3461 4418 0.322546 GGCCTGACCTTCGACCAATT 60.323 55.0 0.0 0.0 34.51 2.32 F
4657 5637 0.469144 GGTGCCCCTGGTTTGAGAAA 60.469 55.0 0.0 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1871 0.482887 CTCCCCCTTTGGAACCTTGT 59.517 55.000 0.0 0.00 35.39 3.16 R
3370 4327 1.621814 TGGTACAGAAAGGAGGAACCG 59.378 52.381 0.0 0.00 44.74 4.44 R
3630 4587 2.693591 AGATGGCATTTTCAGGCTCATG 59.306 45.455 0.0 0.00 0.00 3.07 R
4782 5878 0.178995 TCTGAAACATGTGCAGGGCA 60.179 50.000 21.9 6.85 35.60 5.36 R
5556 6755 3.543536 GATCCTCATCCGGGGCAGC 62.544 68.421 0.0 0.00 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.313874 CTGCCCTCCAGAATCCGT 58.686 61.111 0.00 0.00 44.64 4.69
49 51 4.631377 GTCAAATTTTGGATAGCTTTGCCC 59.369 41.667 9.18 0.00 0.00 5.36
103 105 6.408035 TGATAGTACACCGCCTTCAAAATTA 58.592 36.000 0.00 0.00 0.00 1.40
115 117 6.348540 CGCCTTCAAAATTAGAGCACTAAAGT 60.349 38.462 7.71 0.00 41.15 2.66
125 127 9.614792 AATTAGAGCACTAAAGTATAAAGGGTG 57.385 33.333 7.71 0.00 41.15 4.61
128 130 6.212791 AGAGCACTAAAGTATAAAGGGTGACA 59.787 38.462 0.00 0.00 0.00 3.58
138 140 8.240267 AGTATAAAGGGTGACAGATTAGTCTC 57.760 38.462 0.00 0.00 39.27 3.36
213 215 5.006386 CCCAATCCTCTCATATACTTTGGC 58.994 45.833 0.00 0.00 32.82 4.52
279 281 4.526650 CCTACTTTTGCACCCTACCAAAAT 59.473 41.667 0.00 0.00 39.40 1.82
292 294 6.098266 ACCCTACCAAAATTGCCTCAATAATC 59.902 38.462 0.00 0.00 32.43 1.75
311 313 8.385858 CAATAATCTATCAATATGCTCACACGG 58.614 37.037 0.00 0.00 0.00 4.94
323 325 0.675837 TCACACGGTCCTCGAGGTAG 60.676 60.000 30.17 22.83 42.43 3.18
356 358 6.704493 TGCGTCACTGACTTTATAAGAACTTT 59.296 34.615 7.58 0.00 0.00 2.66
423 425 3.669824 GCTAGTTCTTTTGGCGGCTTAAC 60.670 47.826 11.43 7.37 0.00 2.01
450 452 1.688735 GCTGCTTTCTCCCCAACTTTT 59.311 47.619 0.00 0.00 0.00 2.27
451 453 2.103094 GCTGCTTTCTCCCCAACTTTTT 59.897 45.455 0.00 0.00 0.00 1.94
482 484 3.309848 CCACCTCCCTCATTTATTGGGTT 60.310 47.826 0.00 0.00 41.58 4.11
594 597 2.863132 TAAGCCGCCCAAAAGAACTA 57.137 45.000 0.00 0.00 0.00 2.24
673 676 8.268850 TGAGGTAAATCTGAAACTCTAAATGC 57.731 34.615 0.00 0.00 0.00 3.56
674 677 8.103305 TGAGGTAAATCTGAAACTCTAAATGCT 58.897 33.333 0.00 0.00 0.00 3.79
675 678 9.601217 GAGGTAAATCTGAAACTCTAAATGCTA 57.399 33.333 0.00 0.00 0.00 3.49
676 679 9.606631 AGGTAAATCTGAAACTCTAAATGCTAG 57.393 33.333 0.00 0.00 0.00 3.42
677 680 8.338986 GGTAAATCTGAAACTCTAAATGCTAGC 58.661 37.037 8.10 8.10 0.00 3.42
678 681 7.928307 AAATCTGAAACTCTAAATGCTAGCA 57.072 32.000 21.85 21.85 0.00 3.49
679 682 8.517062 AAATCTGAAACTCTAAATGCTAGCAT 57.483 30.769 24.67 24.67 38.46 3.79
680 683 7.727331 ATCTGAAACTCTAAATGCTAGCATC 57.273 36.000 29.67 15.48 35.31 3.91
681 684 6.882656 TCTGAAACTCTAAATGCTAGCATCT 58.117 36.000 29.67 19.77 35.31 2.90
682 685 8.011844 TCTGAAACTCTAAATGCTAGCATCTA 57.988 34.615 29.67 19.83 35.31 1.98
683 686 7.923344 TCTGAAACTCTAAATGCTAGCATCTAC 59.077 37.037 29.67 8.67 35.31 2.59
684 687 7.786030 TGAAACTCTAAATGCTAGCATCTACT 58.214 34.615 29.67 16.59 35.31 2.57
685 688 7.923344 TGAAACTCTAAATGCTAGCATCTACTC 59.077 37.037 29.67 17.13 35.31 2.59
686 689 6.339587 ACTCTAAATGCTAGCATCTACTCC 57.660 41.667 29.67 0.00 35.31 3.85
687 690 5.245075 ACTCTAAATGCTAGCATCTACTCCC 59.755 44.000 29.67 0.00 35.31 4.30
688 691 5.398236 TCTAAATGCTAGCATCTACTCCCT 58.602 41.667 29.67 9.53 35.31 4.20
689 692 4.615588 AAATGCTAGCATCTACTCCCTC 57.384 45.455 29.67 0.00 35.31 4.30
690 693 2.002505 TGCTAGCATCTACTCCCTCC 57.997 55.000 14.93 0.00 0.00 4.30
691 694 0.885196 GCTAGCATCTACTCCCTCCG 59.115 60.000 10.63 0.00 0.00 4.63
692 695 1.820090 GCTAGCATCTACTCCCTCCGT 60.820 57.143 10.63 0.00 0.00 4.69
693 696 2.588620 CTAGCATCTACTCCCTCCGTT 58.411 52.381 0.00 0.00 0.00 4.44
694 697 1.404843 AGCATCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
695 698 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
696 699 2.030045 GCATCTACTCCCTCCGTTCCT 61.030 57.143 0.00 0.00 0.00 3.36
697 700 2.752154 GCATCTACTCCCTCCGTTCCTA 60.752 54.545 0.00 0.00 0.00 2.94
698 701 3.563223 CATCTACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
699 702 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
700 703 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
701 704 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
702 705 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
703 706 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
704 707 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
705 708 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
706 709 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
707 710 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
708 711 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
709 712 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
710 713 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
711 714 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
712 715 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
754 757 5.519722 CGCATACGGATGTATATAGATGCA 58.480 41.667 9.90 0.00 39.28 3.96
755 758 6.152379 CGCATACGGATGTATATAGATGCAT 58.848 40.000 9.90 0.00 40.68 3.96
756 759 6.642540 CGCATACGGATGTATATAGATGCATT 59.357 38.462 9.90 1.23 38.38 3.56
757 760 7.169813 CGCATACGGATGTATATAGATGCATTT 59.830 37.037 9.90 0.00 38.38 2.32
758 761 8.491152 GCATACGGATGTATATAGATGCATTTC 58.509 37.037 9.90 0.00 38.38 2.17
759 762 9.533253 CATACGGATGTATATAGATGCATTTCA 57.467 33.333 11.19 0.00 38.38 2.69
761 764 8.484641 ACGGATGTATATAGATGCATTTCAAG 57.515 34.615 11.19 0.00 38.38 3.02
762 765 8.097038 ACGGATGTATATAGATGCATTTCAAGT 58.903 33.333 11.19 0.00 38.38 3.16
763 766 8.939929 CGGATGTATATAGATGCATTTCAAGTT 58.060 33.333 11.19 0.00 38.38 2.66
774 777 9.798994 AGATGCATTTCAAGTTTAGATTCATTC 57.201 29.630 0.00 0.00 0.00 2.67
775 778 9.577110 GATGCATTTCAAGTTTAGATTCATTCA 57.423 29.630 0.00 0.00 0.00 2.57
777 780 9.932207 TGCATTTCAAGTTTAGATTCATTCATT 57.068 25.926 0.00 0.00 0.00 2.57
782 785 9.985730 TTCAAGTTTAGATTCATTCATTTTGCT 57.014 25.926 0.00 0.00 0.00 3.91
783 786 9.630098 TCAAGTTTAGATTCATTCATTTTGCTC 57.370 29.630 0.00 0.00 0.00 4.26
784 787 8.866956 CAAGTTTAGATTCATTCATTTTGCTCC 58.133 33.333 0.00 0.00 0.00 4.70
785 788 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
786 789 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
787 790 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
788 791 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
789 792 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
790 793 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
791 794 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
792 795 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
793 796 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
794 797 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
795 798 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
796 799 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
797 800 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
798 801 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
799 802 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
800 803 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
801 804 4.072839 TGCTCCGTATGTAGTCCATCTAG 58.927 47.826 0.00 0.00 34.86 2.43
802 805 4.073549 GCTCCGTATGTAGTCCATCTAGT 58.926 47.826 0.00 0.00 34.86 2.57
803 806 4.083217 GCTCCGTATGTAGTCCATCTAGTG 60.083 50.000 0.00 0.00 34.86 2.74
820 823 8.006298 CATCTAGTGGAATCTCTACAAAGACT 57.994 38.462 0.00 0.00 29.78 3.24
821 824 8.474025 CATCTAGTGGAATCTCTACAAAGACTT 58.526 37.037 0.00 0.00 29.78 3.01
822 825 9.702253 ATCTAGTGGAATCTCTACAAAGACTTA 57.298 33.333 0.00 0.00 29.78 2.24
823 826 9.702253 TCTAGTGGAATCTCTACAAAGACTTAT 57.298 33.333 0.00 0.00 29.47 1.73
838 841 9.813446 ACAAAGACTTATATTTAGGAACGTAGG 57.187 33.333 0.00 0.00 0.00 3.18
839 842 9.257651 CAAAGACTTATATTTAGGAACGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
840 843 8.773033 AAGACTTATATTTAGGAACGTAGGGA 57.227 34.615 0.00 0.00 0.00 4.20
841 844 8.406730 AGACTTATATTTAGGAACGTAGGGAG 57.593 38.462 0.00 0.00 0.00 4.30
842 845 8.003629 AGACTTATATTTAGGAACGTAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
843 846 9.289782 GACTTATATTTAGGAACGTAGGGAGTA 57.710 37.037 0.00 0.00 0.00 2.59
844 847 9.294614 ACTTATATTTAGGAACGTAGGGAGTAG 57.705 37.037 0.00 0.00 0.00 2.57
845 848 9.294614 CTTATATTTAGGAACGTAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
846 849 9.646522 TTATATTTAGGAACGTAGGGAGTAGTT 57.353 33.333 0.00 0.00 0.00 2.24
847 850 6.864151 ATTTAGGAACGTAGGGAGTAGTTT 57.136 37.500 0.00 0.00 0.00 2.66
848 851 6.670695 TTTAGGAACGTAGGGAGTAGTTTT 57.329 37.500 0.00 0.00 0.00 2.43
849 852 4.797800 AGGAACGTAGGGAGTAGTTTTC 57.202 45.455 0.00 0.00 0.00 2.29
850 853 4.414677 AGGAACGTAGGGAGTAGTTTTCT 58.585 43.478 0.00 0.00 0.00 2.52
851 854 4.837298 AGGAACGTAGGGAGTAGTTTTCTT 59.163 41.667 0.00 0.00 0.00 2.52
852 855 5.306419 AGGAACGTAGGGAGTAGTTTTCTTT 59.694 40.000 0.00 0.00 0.00 2.52
853 856 5.994054 GGAACGTAGGGAGTAGTTTTCTTTT 59.006 40.000 0.00 0.00 0.00 2.27
854 857 7.015584 AGGAACGTAGGGAGTAGTTTTCTTTTA 59.984 37.037 0.00 0.00 0.00 1.52
855 858 7.821359 GGAACGTAGGGAGTAGTTTTCTTTTAT 59.179 37.037 0.00 0.00 0.00 1.40
856 859 9.212641 GAACGTAGGGAGTAGTTTTCTTTTATT 57.787 33.333 0.00 0.00 0.00 1.40
858 861 9.866798 ACGTAGGGAGTAGTTTTCTTTTATTAG 57.133 33.333 0.00 0.00 0.00 1.73
859 862 9.866798 CGTAGGGAGTAGTTTTCTTTTATTAGT 57.133 33.333 0.00 0.00 0.00 2.24
933 936 6.286240 TGAGAATCACATGCTAACAGTAGT 57.714 37.500 0.00 0.00 42.56 2.73
934 937 6.333416 TGAGAATCACATGCTAACAGTAGTC 58.667 40.000 0.00 0.00 42.56 2.59
935 938 6.153510 TGAGAATCACATGCTAACAGTAGTCT 59.846 38.462 0.00 0.00 42.56 3.24
936 939 7.339466 TGAGAATCACATGCTAACAGTAGTCTA 59.661 37.037 0.00 0.00 42.56 2.59
937 940 7.711846 AGAATCACATGCTAACAGTAGTCTAG 58.288 38.462 0.00 0.00 0.00 2.43
970 973 3.004752 ACATGGGCTGTAAACTGATCC 57.995 47.619 0.00 0.00 35.91 3.36
983 986 5.356882 AAACTGATCCAACAATGTACACG 57.643 39.130 0.00 0.00 0.00 4.49
1180 1185 4.426112 CTGGAGCTCGCTGACGCA 62.426 66.667 7.83 0.00 39.84 5.24
1426 1432 0.541063 TTACTCGTGAGGTGGAGGCA 60.541 55.000 1.43 0.00 34.58 4.75
1509 1515 0.529992 CGCCGAGTGGTAAGATTCCC 60.530 60.000 0.00 0.00 37.67 3.97
1603 1609 5.585820 TGTTAGCATACGTGTTCATCCTA 57.414 39.130 0.00 0.00 0.00 2.94
1606 1612 2.102588 AGCATACGTGTTCATCCTACCC 59.897 50.000 0.00 0.00 0.00 3.69
1607 1613 2.102588 GCATACGTGTTCATCCTACCCT 59.897 50.000 0.00 0.00 0.00 4.34
1730 1751 6.174720 ACAAGATTTACTCAGACCAGTCAA 57.825 37.500 0.00 0.00 0.00 3.18
1804 1830 1.229428 AATTGCCGATGATGCGTAGG 58.771 50.000 0.00 0.00 0.00 3.18
1828 1854 8.278639 AGGTGACCATGGTGTATTCATATTTTA 58.721 33.333 25.52 0.00 0.00 1.52
1829 1855 8.567948 GGTGACCATGGTGTATTCATATTTTAG 58.432 37.037 25.52 0.00 0.00 1.85
1830 1856 9.120538 GTGACCATGGTGTATTCATATTTTAGT 57.879 33.333 25.52 0.00 0.00 2.24
2003 2034 4.310769 CGGCCAATAGAGAAAGAGTATGG 58.689 47.826 2.24 0.00 0.00 2.74
2015 2046 7.291885 AGAGAAAGAGTATGGGATGATGATGAA 59.708 37.037 0.00 0.00 0.00 2.57
2042 2073 2.545946 GGAGATGCTCGAATTAGTTGGC 59.454 50.000 0.00 0.00 0.00 4.52
2510 2892 6.356714 GCTTTAAATTTTGTGCAAAATGTCCG 59.643 34.615 19.58 9.87 43.38 4.79
2784 3166 9.717942 GATCAACCAGAATCTAATACTGCTAAT 57.282 33.333 0.00 0.00 0.00 1.73
2851 3742 3.873361 CCGTCATTGCCAGCTATATATGG 59.127 47.826 0.00 0.00 39.73 2.74
2984 3877 7.246171 ACTGTCTCACTTATTACCAGATGTT 57.754 36.000 0.00 0.00 0.00 2.71
3038 3931 2.247699 TGCTAGCTTCCCTAGGAACA 57.752 50.000 17.23 0.00 40.94 3.18
3202 4096 9.646427 GAACATTTGCATAATTTTTGGTACCTA 57.354 29.630 14.36 1.78 0.00 3.08
3340 4234 4.161565 CCTGACAGGGTAGCTGTTACATAA 59.838 45.833 14.26 0.00 34.88 1.90
3370 4327 4.281525 TGTGTTCTTGGTTTTACTTCGC 57.718 40.909 0.00 0.00 0.00 4.70
3388 4345 1.723220 GCGGTTCCTCCTTTCTGTAC 58.277 55.000 0.00 0.00 0.00 2.90
3397 4354 4.536090 TCCTCCTTTCTGTACCATTGACAT 59.464 41.667 0.00 0.00 0.00 3.06
3398 4355 4.637534 CCTCCTTTCTGTACCATTGACATG 59.362 45.833 0.00 0.00 0.00 3.21
3461 4418 0.322546 GGCCTGACCTTCGACCAATT 60.323 55.000 0.00 0.00 34.51 2.32
3532 4489 6.729690 TGTTTTGAATGGAGAACAGGAAAT 57.270 33.333 0.00 0.00 0.00 2.17
3534 4491 8.243961 TGTTTTGAATGGAGAACAGGAAATAA 57.756 30.769 0.00 0.00 0.00 1.40
3539 4496 6.371548 TGAATGGAGAACAGGAAATAACTTCG 59.628 38.462 0.00 0.00 34.56 3.79
3593 4550 4.256920 CTGAAGAGTATTTGGAGGTGGTG 58.743 47.826 0.00 0.00 0.00 4.17
3630 4587 3.549794 ACATTCCTTAGCATTGCCTCTC 58.450 45.455 4.70 0.00 0.00 3.20
3713 4670 7.065803 CGACAGGTAATTTTTGTGATGGAGTAT 59.934 37.037 0.00 0.00 0.00 2.12
3721 4678 9.912634 AATTTTTGTGATGGAGTATGTTAGTTG 57.087 29.630 0.00 0.00 0.00 3.16
3806 4766 6.748333 TTGATCATGGAATTCTGTTGTCTC 57.252 37.500 5.23 4.17 0.00 3.36
3817 4777 7.699812 GGAATTCTGTTGTCTCTGCATTTATTC 59.300 37.037 5.23 0.00 0.00 1.75
3819 4779 7.750229 TTCTGTTGTCTCTGCATTTATTCTT 57.250 32.000 0.00 0.00 0.00 2.52
3856 4816 9.107177 TCATTTGTTTGCATCATTAAGTTGTTT 57.893 25.926 0.00 0.00 0.00 2.83
3878 4839 5.964958 TCTTAATTTTTCCACAGGAGCTG 57.035 39.130 0.00 0.00 37.52 4.24
3881 4842 2.949177 TTTTTCCACAGGAGCTGCTA 57.051 45.000 7.70 0.00 34.37 3.49
3891 4852 4.997395 CACAGGAGCTGCTAGAAAAACTTA 59.003 41.667 7.70 0.00 34.37 2.24
3895 4856 5.649831 AGGAGCTGCTAGAAAAACTTAATGG 59.350 40.000 5.69 0.00 0.00 3.16
3897 4858 6.403746 GGAGCTGCTAGAAAAACTTAATGGAC 60.404 42.308 0.15 0.00 0.00 4.02
3899 4860 6.717084 AGCTGCTAGAAAAACTTAATGGACTT 59.283 34.615 0.00 0.00 0.00 3.01
3910 4871 1.542492 AATGGACTTCAAGCAGCTGG 58.458 50.000 17.12 0.00 0.00 4.85
3934 4895 5.886960 AATGAAAAGTCATCCACTGCTAC 57.113 39.130 0.00 0.00 44.02 3.58
3977 4938 1.443802 GGAACCTTTCCGCTTCTGAG 58.556 55.000 0.00 0.00 40.59 3.35
3981 4942 3.208747 ACCTTTCCGCTTCTGAGAAAA 57.791 42.857 0.00 0.00 0.00 2.29
3998 4959 1.685355 AAAGCCCAACACCAGCAACC 61.685 55.000 0.00 0.00 0.00 3.77
4001 4962 1.533753 CCCAACACCAGCAACCCAT 60.534 57.895 0.00 0.00 0.00 4.00
4089 5050 2.815647 CTTCCCTTCAGCGCGTCC 60.816 66.667 8.43 0.00 0.00 4.79
4197 5158 0.801251 AATGCTTCTGTTCTCGCTGC 59.199 50.000 0.00 0.00 0.00 5.25
4263 5225 7.065204 GCTTGAAGAGGTAAAGGTTTCATCTAG 59.935 40.741 0.00 0.00 0.00 2.43
4270 5232 2.035530 AGGTTTCATCTAGCTGCTGC 57.964 50.000 13.43 7.62 40.05 5.25
4271 5233 1.280133 AGGTTTCATCTAGCTGCTGCA 59.720 47.619 18.42 0.88 42.74 4.41
4272 5234 1.669779 GGTTTCATCTAGCTGCTGCAG 59.330 52.381 24.80 24.80 42.74 4.41
4273 5235 2.625737 GTTTCATCTAGCTGCTGCAGA 58.374 47.619 32.30 12.75 42.74 4.26
4326 5289 6.826231 TCTGTGGTTTTTCTGATACAGTTGAA 59.174 34.615 0.00 0.00 37.42 2.69
4328 5291 7.424803 TGTGGTTTTTCTGATACAGTTGAATG 58.575 34.615 0.00 0.00 32.61 2.67
4347 5310 7.974243 TGAATGTTTTTCATATGAATCTGCG 57.026 32.000 18.61 0.00 35.48 5.18
4351 5314 5.123661 TGTTTTTCATATGAATCTGCGCTGA 59.876 36.000 19.70 19.70 33.54 4.26
4352 5315 4.801147 TTTCATATGAATCTGCGCTGAC 57.199 40.909 19.81 8.48 33.54 3.51
4353 5316 3.457610 TCATATGAATCTGCGCTGACA 57.542 42.857 19.81 14.02 0.00 3.58
4354 5317 3.387397 TCATATGAATCTGCGCTGACAG 58.613 45.455 19.81 2.11 39.12 3.51
4400 5364 4.189188 CGACGGGCGTTCCTCGAT 62.189 66.667 0.00 0.00 42.86 3.59
4409 5373 1.144936 GTTCCTCGATGCCCTCCAG 59.855 63.158 0.00 0.00 0.00 3.86
4412 5376 2.739996 CCTCGATGCCCTCCAGCTT 61.740 63.158 0.00 0.00 0.00 3.74
4415 5379 3.207669 GATGCCCTCCAGCTTGCG 61.208 66.667 0.00 0.00 0.00 4.85
4436 5400 1.141881 CTCCGTCCAGATGAACCCG 59.858 63.158 0.00 0.00 0.00 5.28
4463 5427 2.243957 TGTTCAACAGACGCCGCAG 61.244 57.895 0.00 0.00 0.00 5.18
4545 5515 2.500392 TACCGGGAATTGAAGTTGGG 57.500 50.000 6.32 0.00 0.00 4.12
4573 5543 3.621715 GGGATACTAGTCGCTTTTTGTGG 59.378 47.826 0.00 0.00 0.00 4.17
4640 5618 4.206375 TCATGGCAATGTTTCATATCGGT 58.794 39.130 0.00 0.00 35.15 4.69
4641 5619 4.036616 TCATGGCAATGTTTCATATCGGTG 59.963 41.667 0.00 0.00 35.15 4.94
4642 5620 2.098934 TGGCAATGTTTCATATCGGTGC 59.901 45.455 0.00 0.00 0.00 5.01
4646 5626 0.916086 TGTTTCATATCGGTGCCCCT 59.084 50.000 0.00 0.00 0.00 4.79
4657 5637 0.469144 GGTGCCCCTGGTTTGAGAAA 60.469 55.000 0.00 0.00 0.00 2.52
4672 5652 6.382608 GTTTGAGAAATTTAGTTGAGAGGCC 58.617 40.000 0.00 0.00 0.00 5.19
4682 5662 2.173569 AGTTGAGAGGCCTTGTTCTTGT 59.826 45.455 6.77 0.00 0.00 3.16
4725 5821 4.558538 AGTTTCAGTAAAGTTGCAGCTG 57.441 40.909 10.11 10.11 0.00 4.24
4726 5822 3.316308 AGTTTCAGTAAAGTTGCAGCTGG 59.684 43.478 17.12 0.00 0.00 4.85
4764 5860 3.627123 TGGAGAATTGTATGCACCGATTG 59.373 43.478 5.60 0.00 0.00 2.67
4782 5878 4.798907 CGATTGTGCTCGTTTCTACTGTAT 59.201 41.667 0.00 0.00 34.00 2.29
4784 5880 3.250744 TGTGCTCGTTTCTACTGTATGC 58.749 45.455 0.00 0.00 0.00 3.14
4800 5896 0.892755 ATGCCCTGCACATGTTTCAG 59.107 50.000 14.82 14.82 43.04 3.02
4806 5902 4.737054 CCCTGCACATGTTTCAGAAATAC 58.263 43.478 20.70 0.00 0.00 1.89
4807 5903 4.218200 CCCTGCACATGTTTCAGAAATACA 59.782 41.667 20.70 0.00 0.00 2.29
4808 5904 5.278907 CCCTGCACATGTTTCAGAAATACAA 60.279 40.000 20.70 0.00 0.00 2.41
4809 5905 6.215121 CCTGCACATGTTTCAGAAATACAAA 58.785 36.000 20.70 0.00 0.00 2.83
4810 5906 6.144402 CCTGCACATGTTTCAGAAATACAAAC 59.856 38.462 20.70 0.00 0.00 2.93
4811 5907 5.982516 TGCACATGTTTCAGAAATACAAACC 59.017 36.000 0.00 0.00 30.32 3.27
4812 5908 5.982516 GCACATGTTTCAGAAATACAAACCA 59.017 36.000 0.00 0.00 30.32 3.67
4813 5909 6.646240 GCACATGTTTCAGAAATACAAACCAT 59.354 34.615 0.00 0.00 30.32 3.55
4814 5910 7.359431 GCACATGTTTCAGAAATACAAACCATG 60.359 37.037 14.43 14.43 31.72 3.66
4815 5911 7.652909 CACATGTTTCAGAAATACAAACCATGT 59.347 33.333 15.35 15.35 46.36 3.21
4826 5922 4.008074 ACAAACCATGTAGAGTGAGTGG 57.992 45.455 0.00 0.00 41.63 4.00
4839 5935 1.876156 GTGAGTGGGAAGCTGTTTCAG 59.124 52.381 6.58 0.00 37.54 3.02
4853 5949 1.464997 GTTTCAGATCGAAAAGGCGCT 59.535 47.619 7.64 0.00 45.11 5.92
4854 5950 1.078709 TTCAGATCGAAAAGGCGCTG 58.921 50.000 7.64 0.00 0.00 5.18
4855 5951 0.740868 TCAGATCGAAAAGGCGCTGG 60.741 55.000 7.64 0.00 0.00 4.85
4856 5952 1.021390 CAGATCGAAAAGGCGCTGGT 61.021 55.000 7.64 0.00 0.00 4.00
4857 5953 1.021390 AGATCGAAAAGGCGCTGGTG 61.021 55.000 7.64 0.00 0.00 4.17
4858 5954 1.298859 GATCGAAAAGGCGCTGGTGT 61.299 55.000 7.64 0.00 0.00 4.16
4859 5955 0.889186 ATCGAAAAGGCGCTGGTGTT 60.889 50.000 7.64 0.00 0.00 3.32
4860 5956 1.082104 CGAAAAGGCGCTGGTGTTC 60.082 57.895 7.64 2.54 0.00 3.18
4861 5957 1.781025 CGAAAAGGCGCTGGTGTTCA 61.781 55.000 7.64 0.00 0.00 3.18
4862 5958 0.040067 GAAAAGGCGCTGGTGTTCAG 60.040 55.000 7.64 0.00 46.03 3.02
4863 5959 1.455383 AAAAGGCGCTGGTGTTCAGG 61.455 55.000 7.64 0.00 43.54 3.86
4874 5970 1.675310 TGTTCAGGGCCGAGCAATG 60.675 57.895 11.18 0.00 0.00 2.82
4905 6001 7.230712 ACATGAGTCCACGTAATATAGATCACA 59.769 37.037 0.00 0.00 0.00 3.58
4912 6019 7.865889 TCCACGTAATATAGATCACAATGTCAC 59.134 37.037 0.00 0.00 0.00 3.67
4917 6024 9.750125 GTAATATAGATCACAATGTCACTGTCA 57.250 33.333 0.00 0.00 0.00 3.58
4921 6028 6.889301 AGATCACAATGTCACTGTCAATTT 57.111 33.333 0.00 0.00 0.00 1.82
4934 6041 4.584743 ACTGTCAATTTCCCAGGAAGAAAC 59.415 41.667 0.00 0.00 36.13 2.78
4938 6045 4.072131 CAATTTCCCAGGAAGAAACGAGA 58.928 43.478 0.00 0.00 36.13 4.04
4939 6046 2.833631 TTCCCAGGAAGAAACGAGAC 57.166 50.000 0.00 0.00 0.00 3.36
4941 6048 1.618837 TCCCAGGAAGAAACGAGACAG 59.381 52.381 0.00 0.00 0.00 3.51
4942 6049 1.344763 CCCAGGAAGAAACGAGACAGT 59.655 52.381 0.00 0.00 0.00 3.55
4943 6050 2.561419 CCCAGGAAGAAACGAGACAGTA 59.439 50.000 0.00 0.00 0.00 2.74
4944 6051 3.367498 CCCAGGAAGAAACGAGACAGTAG 60.367 52.174 0.00 0.00 0.00 2.57
4946 6053 3.256136 CAGGAAGAAACGAGACAGTAGGT 59.744 47.826 0.00 0.00 0.00 3.08
4947 6054 3.896272 AGGAAGAAACGAGACAGTAGGTT 59.104 43.478 0.00 0.00 0.00 3.50
4948 6055 4.022155 AGGAAGAAACGAGACAGTAGGTTC 60.022 45.833 0.00 0.00 0.00 3.62
4949 6056 3.938289 AGAAACGAGACAGTAGGTTCC 57.062 47.619 0.00 0.00 0.00 3.62
4950 6057 2.228343 AGAAACGAGACAGTAGGTTCCG 59.772 50.000 0.00 0.00 0.00 4.30
4951 6058 1.613836 AACGAGACAGTAGGTTCCGT 58.386 50.000 0.00 0.00 38.73 4.69
4952 6059 2.479566 ACGAGACAGTAGGTTCCGTA 57.520 50.000 0.00 0.00 36.52 4.02
4953 6060 2.079925 ACGAGACAGTAGGTTCCGTAC 58.920 52.381 0.00 0.00 36.52 3.67
4957 6070 3.324170 CAGTAGGTTCCGTACTGCG 57.676 57.895 10.15 0.00 42.83 5.18
4965 6078 1.592400 TTCCGTACTGCGTCCTCTGG 61.592 60.000 0.00 0.00 39.32 3.86
4973 6086 2.093973 ACTGCGTCCTCTGGTTTCTATG 60.094 50.000 0.00 0.00 0.00 2.23
4974 6087 1.207089 TGCGTCCTCTGGTTTCTATGG 59.793 52.381 0.00 0.00 0.00 2.74
4975 6088 1.207329 GCGTCCTCTGGTTTCTATGGT 59.793 52.381 0.00 0.00 0.00 3.55
4976 6089 2.429610 GCGTCCTCTGGTTTCTATGGTA 59.570 50.000 0.00 0.00 0.00 3.25
4977 6090 3.069729 GCGTCCTCTGGTTTCTATGGTAT 59.930 47.826 0.00 0.00 0.00 2.73
4978 6091 4.280174 GCGTCCTCTGGTTTCTATGGTATA 59.720 45.833 0.00 0.00 0.00 1.47
4979 6092 5.047235 GCGTCCTCTGGTTTCTATGGTATAT 60.047 44.000 0.00 0.00 0.00 0.86
4980 6093 6.518537 GCGTCCTCTGGTTTCTATGGTATATT 60.519 42.308 0.00 0.00 0.00 1.28
4981 6094 7.309621 GCGTCCTCTGGTTTCTATGGTATATTA 60.310 40.741 0.00 0.00 0.00 0.98
4982 6095 8.582437 CGTCCTCTGGTTTCTATGGTATATTAA 58.418 37.037 0.00 0.00 0.00 1.40
4984 6097 8.594550 TCCTCTGGTTTCTATGGTATATTAAGC 58.405 37.037 0.00 0.00 0.00 3.09
4985 6098 7.545965 CCTCTGGTTTCTATGGTATATTAAGCG 59.454 40.741 0.00 0.00 0.00 4.68
4987 6100 9.081204 TCTGGTTTCTATGGTATATTAAGCGTA 57.919 33.333 0.00 0.00 0.00 4.42
4989 6102 8.863086 TGGTTTCTATGGTATATTAAGCGTAGT 58.137 33.333 4.60 0.00 37.60 2.73
5004 6117 3.287312 CGTAGTAACGGTTTCTGTCCA 57.713 47.619 9.90 0.00 45.50 4.02
5005 6118 3.841643 CGTAGTAACGGTTTCTGTCCAT 58.158 45.455 9.90 0.00 45.50 3.41
5036 6149 5.705905 GGCTGTAGTTTAGTGGTGAGAATTT 59.294 40.000 0.00 0.00 0.00 1.82
5084 6197 1.303888 AATCCCAGCAGCCACACAG 60.304 57.895 0.00 0.00 0.00 3.66
5163 6316 3.613494 TTTTTCCCGTATCCATCACGA 57.387 42.857 0.00 0.00 41.91 4.35
5164 6317 2.882927 TTTCCCGTATCCATCACGAG 57.117 50.000 0.00 0.00 41.91 4.18
5165 6318 0.387929 TTCCCGTATCCATCACGAGC 59.612 55.000 0.00 0.00 41.91 5.03
5166 6319 0.753848 TCCCGTATCCATCACGAGCA 60.754 55.000 0.00 0.00 41.91 4.26
5167 6320 0.597637 CCCGTATCCATCACGAGCAC 60.598 60.000 0.00 0.00 41.91 4.40
5168 6321 0.102300 CCGTATCCATCACGAGCACA 59.898 55.000 0.00 0.00 41.91 4.57
5169 6322 1.269778 CCGTATCCATCACGAGCACAT 60.270 52.381 0.00 0.00 41.91 3.21
5173 6359 4.506288 CGTATCCATCACGAGCACATTTTA 59.494 41.667 0.00 0.00 41.91 1.52
5175 6361 6.292865 CGTATCCATCACGAGCACATTTTATT 60.293 38.462 0.00 0.00 41.91 1.40
5184 6370 7.489435 TCACGAGCACATTTTATTTTTGAACAA 59.511 29.630 0.00 0.00 0.00 2.83
5227 6414 2.432628 AACCGCGCTTTCTCTCCG 60.433 61.111 5.56 0.00 0.00 4.63
5243 6430 7.441890 TTCTCTCCGCATTTAAATTTACACA 57.558 32.000 0.00 0.00 0.00 3.72
5254 6441 8.530720 CATTTAAATTTACACACACACACACAG 58.469 33.333 0.00 0.00 0.00 3.66
5260 6447 2.434336 ACACACACACACACAGACCTAT 59.566 45.455 0.00 0.00 0.00 2.57
5556 6755 1.205655 TCCACGATCTTCTCCAGCTTG 59.794 52.381 0.00 0.00 0.00 4.01
5805 7004 3.249189 TTGGCCAGCCCGAAGTCT 61.249 61.111 5.11 0.00 35.87 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.323409 GGGGCAAAGCTATCCAAAATTTGA 60.323 41.667 7.37 0.00 33.69 2.69
79 81 3.965379 TTTGAAGGCGGTGTACTATCA 57.035 42.857 0.00 0.00 0.00 2.15
103 105 6.212791 TGTCACCCTTTATACTTTAGTGCTCT 59.787 38.462 0.00 0.00 0.00 4.09
115 117 7.069578 GTGGAGACTAATCTGTCACCCTTTATA 59.930 40.741 8.23 0.00 43.78 0.98
125 127 5.140747 ACAAGTGTGGAGACTAATCTGTC 57.859 43.478 0.00 0.00 34.34 3.51
128 130 6.014156 AGCTAAACAAGTGTGGAGACTAATCT 60.014 38.462 0.00 0.00 38.15 2.40
138 140 3.059188 CCACGTTAGCTAAACAAGTGTGG 60.059 47.826 20.93 19.17 38.60 4.17
279 281 9.170734 GAGCATATTGATAGATTATTGAGGCAA 57.829 33.333 0.00 0.00 0.00 4.52
292 294 3.990469 GGACCGTGTGAGCATATTGATAG 59.010 47.826 0.00 0.00 0.00 2.08
296 298 2.205074 GAGGACCGTGTGAGCATATTG 58.795 52.381 0.00 0.00 0.00 1.90
311 313 1.139947 GCACTGCTACCTCGAGGAC 59.860 63.158 37.69 24.49 38.94 3.85
335 337 9.490379 GGAAGAAAGTTCTTATAAAGTCAGTGA 57.510 33.333 6.29 0.00 46.84 3.41
380 382 1.381327 ATGGACGGGTGGATCGAGT 60.381 57.895 0.00 0.00 0.00 4.18
423 425 3.091545 TGGGGAGAAAGCAGCTTATTTG 58.908 45.455 8.45 0.00 0.00 2.32
450 452 1.564348 GAGGGAGGTGGCTTATGGAAA 59.436 52.381 0.00 0.00 0.00 3.13
451 453 1.213296 GAGGGAGGTGGCTTATGGAA 58.787 55.000 0.00 0.00 0.00 3.53
452 454 0.044092 TGAGGGAGGTGGCTTATGGA 59.956 55.000 0.00 0.00 0.00 3.41
462 464 4.352893 CAAACCCAATAAATGAGGGAGGT 58.647 43.478 3.32 0.00 45.80 3.85
589 591 3.863041 ACTGCCTCTTTCCGAATAGTTC 58.137 45.455 0.00 0.00 0.00 3.01
594 597 4.652822 AGTTTAACTGCCTCTTTCCGAAT 58.347 39.130 0.00 0.00 0.00 3.34
647 650 8.730680 GCATTTAGAGTTTCAGATTTACCTCAA 58.269 33.333 0.00 0.00 0.00 3.02
648 651 8.103305 AGCATTTAGAGTTTCAGATTTACCTCA 58.897 33.333 0.00 0.00 0.00 3.86
649 652 8.499403 AGCATTTAGAGTTTCAGATTTACCTC 57.501 34.615 0.00 0.00 0.00 3.85
650 653 9.606631 CTAGCATTTAGAGTTTCAGATTTACCT 57.393 33.333 0.00 0.00 0.00 3.08
651 654 8.338986 GCTAGCATTTAGAGTTTCAGATTTACC 58.661 37.037 10.63 0.00 0.00 2.85
652 655 8.883731 TGCTAGCATTTAGAGTTTCAGATTTAC 58.116 33.333 14.93 0.00 0.00 2.01
653 656 9.618890 ATGCTAGCATTTAGAGTTTCAGATTTA 57.381 29.630 24.67 0.00 31.82 1.40
654 657 7.928307 TGCTAGCATTTAGAGTTTCAGATTT 57.072 32.000 14.93 0.00 0.00 2.17
655 658 7.992033 AGATGCTAGCATTTAGAGTTTCAGATT 59.008 33.333 30.08 3.29 36.70 2.40
656 659 7.507829 AGATGCTAGCATTTAGAGTTTCAGAT 58.492 34.615 30.08 3.71 36.70 2.90
657 660 6.882656 AGATGCTAGCATTTAGAGTTTCAGA 58.117 36.000 30.08 0.00 36.70 3.27
658 661 7.925483 AGTAGATGCTAGCATTTAGAGTTTCAG 59.075 37.037 30.08 0.00 36.70 3.02
659 662 7.786030 AGTAGATGCTAGCATTTAGAGTTTCA 58.214 34.615 30.08 5.38 36.70 2.69
660 663 7.383843 GGAGTAGATGCTAGCATTTAGAGTTTC 59.616 40.741 30.08 15.43 36.70 2.78
661 664 7.213678 GGAGTAGATGCTAGCATTTAGAGTTT 58.786 38.462 30.08 6.52 36.70 2.66
662 665 6.239458 GGGAGTAGATGCTAGCATTTAGAGTT 60.239 42.308 30.08 14.39 36.70 3.01
663 666 5.245075 GGGAGTAGATGCTAGCATTTAGAGT 59.755 44.000 30.08 17.66 36.70 3.24
664 667 5.480073 AGGGAGTAGATGCTAGCATTTAGAG 59.520 44.000 30.08 0.00 36.70 2.43
665 668 5.398236 AGGGAGTAGATGCTAGCATTTAGA 58.602 41.667 30.08 13.57 36.70 2.10
666 669 5.337169 GGAGGGAGTAGATGCTAGCATTTAG 60.337 48.000 30.08 0.00 36.70 1.85
667 670 4.528596 GGAGGGAGTAGATGCTAGCATTTA 59.471 45.833 30.08 25.16 36.70 1.40
668 671 3.326297 GGAGGGAGTAGATGCTAGCATTT 59.674 47.826 30.08 26.23 36.70 2.32
669 672 2.903135 GGAGGGAGTAGATGCTAGCATT 59.097 50.000 30.08 20.90 36.70 3.56
670 673 2.534990 GGAGGGAGTAGATGCTAGCAT 58.465 52.381 29.97 29.97 39.69 3.79
671 674 1.819697 CGGAGGGAGTAGATGCTAGCA 60.820 57.143 21.85 21.85 0.00 3.49
672 675 0.885196 CGGAGGGAGTAGATGCTAGC 59.115 60.000 8.10 8.10 0.00 3.42
673 676 2.279935 ACGGAGGGAGTAGATGCTAG 57.720 55.000 0.00 0.00 0.00 3.42
674 677 2.584236 GAACGGAGGGAGTAGATGCTA 58.416 52.381 0.00 0.00 0.00 3.49
675 678 1.404843 GAACGGAGGGAGTAGATGCT 58.595 55.000 0.00 0.00 0.00 3.79
676 679 0.389757 GGAACGGAGGGAGTAGATGC 59.610 60.000 0.00 0.00 0.00 3.91
677 680 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
678 681 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
679 682 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
680 683 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
681 684 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
682 685 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
683 686 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
684 687 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
685 688 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
686 689 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
687 690 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
731 734 5.519722 TGCATCTATATACATCCGTATGCG 58.480 41.667 0.00 0.00 38.79 4.73
732 735 7.953158 AATGCATCTATATACATCCGTATGC 57.047 36.000 0.00 0.00 38.79 3.14
733 736 9.533253 TGAAATGCATCTATATACATCCGTATG 57.467 33.333 0.00 0.00 38.79 2.39
735 738 9.586435 CTTGAAATGCATCTATATACATCCGTA 57.414 33.333 0.00 0.00 0.00 4.02
736 739 8.097038 ACTTGAAATGCATCTATATACATCCGT 58.903 33.333 0.00 0.00 0.00 4.69
737 740 8.484641 ACTTGAAATGCATCTATATACATCCG 57.515 34.615 0.00 0.00 0.00 4.18
748 751 9.798994 GAATGAATCTAAACTTGAAATGCATCT 57.201 29.630 0.00 0.00 0.00 2.90
749 752 9.577110 TGAATGAATCTAAACTTGAAATGCATC 57.423 29.630 0.00 0.00 0.00 3.91
751 754 9.932207 AATGAATGAATCTAAACTTGAAATGCA 57.068 25.926 0.00 0.00 0.00 3.96
756 759 9.985730 AGCAAAATGAATGAATCTAAACTTGAA 57.014 25.926 0.00 0.00 0.00 2.69
757 760 9.630098 GAGCAAAATGAATGAATCTAAACTTGA 57.370 29.630 0.00 0.00 0.00 3.02
758 761 8.866956 GGAGCAAAATGAATGAATCTAAACTTG 58.133 33.333 0.00 0.00 0.00 3.16
759 762 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
760 763 7.094205 ACGGAGCAAAATGAATGAATCTAAACT 60.094 33.333 0.00 0.00 0.00 2.66
761 764 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
762 765 7.156876 ACGGAGCAAAATGAATGAATCTAAA 57.843 32.000 0.00 0.00 0.00 1.85
763 766 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
764 767 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
765 768 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
766 769 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
767 770 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
768 771 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
769 772 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
770 773 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
771 774 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
772 775 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
773 776 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
774 777 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
775 778 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
776 779 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
777 780 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
778 781 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
779 782 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
780 783 4.073549 ACTAGATGGACTACATACGGAGC 58.926 47.826 0.00 0.00 40.72 4.70
781 784 5.614923 CACTAGATGGACTACATACGGAG 57.385 47.826 0.00 0.00 40.72 4.63
795 798 8.006298 AGTCTTTGTAGAGATTCCACTAGATG 57.994 38.462 0.00 0.00 0.00 2.90
796 799 8.602472 AAGTCTTTGTAGAGATTCCACTAGAT 57.398 34.615 0.00 0.00 0.00 1.98
797 800 9.702253 ATAAGTCTTTGTAGAGATTCCACTAGA 57.298 33.333 0.00 0.00 0.00 2.43
812 815 9.813446 CCTACGTTCCTAAATATAAGTCTTTGT 57.187 33.333 0.00 0.00 0.00 2.83
813 816 9.257651 CCCTACGTTCCTAAATATAAGTCTTTG 57.742 37.037 0.00 0.00 0.00 2.77
814 817 9.205513 TCCCTACGTTCCTAAATATAAGTCTTT 57.794 33.333 0.00 0.00 0.00 2.52
815 818 8.773033 TCCCTACGTTCCTAAATATAAGTCTT 57.227 34.615 0.00 0.00 0.00 3.01
816 819 8.003629 ACTCCCTACGTTCCTAAATATAAGTCT 58.996 37.037 0.00 0.00 0.00 3.24
817 820 8.175925 ACTCCCTACGTTCCTAAATATAAGTC 57.824 38.462 0.00 0.00 0.00 3.01
818 821 9.294614 CTACTCCCTACGTTCCTAAATATAAGT 57.705 37.037 0.00 0.00 0.00 2.24
819 822 9.294614 ACTACTCCCTACGTTCCTAAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
820 823 9.646522 AACTACTCCCTACGTTCCTAAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
821 824 9.646522 AAACTACTCCCTACGTTCCTAAATATA 57.353 33.333 0.00 0.00 0.00 0.86
822 825 8.544687 AAACTACTCCCTACGTTCCTAAATAT 57.455 34.615 0.00 0.00 0.00 1.28
823 826 7.961326 AAACTACTCCCTACGTTCCTAAATA 57.039 36.000 0.00 0.00 0.00 1.40
824 827 6.864151 AAACTACTCCCTACGTTCCTAAAT 57.136 37.500 0.00 0.00 0.00 1.40
825 828 6.494835 AGAAAACTACTCCCTACGTTCCTAAA 59.505 38.462 0.00 0.00 0.00 1.85
826 829 6.012745 AGAAAACTACTCCCTACGTTCCTAA 58.987 40.000 0.00 0.00 0.00 2.69
827 830 5.574188 AGAAAACTACTCCCTACGTTCCTA 58.426 41.667 0.00 0.00 0.00 2.94
828 831 4.414677 AGAAAACTACTCCCTACGTTCCT 58.585 43.478 0.00 0.00 0.00 3.36
829 832 4.797800 AGAAAACTACTCCCTACGTTCC 57.202 45.455 0.00 0.00 0.00 3.62
830 833 8.768957 ATAAAAGAAAACTACTCCCTACGTTC 57.231 34.615 0.00 0.00 0.00 3.95
832 835 9.866798 CTAATAAAAGAAAACTACTCCCTACGT 57.133 33.333 0.00 0.00 0.00 3.57
833 836 9.866798 ACTAATAAAAGAAAACTACTCCCTACG 57.133 33.333 0.00 0.00 0.00 3.51
897 900 7.412781 GCATGTGATTCTCAACAACAACAAAAA 60.413 33.333 0.00 0.00 0.00 1.94
898 901 6.035866 GCATGTGATTCTCAACAACAACAAAA 59.964 34.615 0.00 0.00 0.00 2.44
899 902 5.519566 GCATGTGATTCTCAACAACAACAAA 59.480 36.000 0.00 0.00 0.00 2.83
900 903 5.042593 GCATGTGATTCTCAACAACAACAA 58.957 37.500 0.00 0.00 0.00 2.83
901 904 4.338964 AGCATGTGATTCTCAACAACAACA 59.661 37.500 0.00 0.00 0.00 3.33
902 905 4.863491 AGCATGTGATTCTCAACAACAAC 58.137 39.130 0.00 0.00 0.00 3.32
903 906 6.039159 TGTTAGCATGTGATTCTCAACAACAA 59.961 34.615 0.00 0.00 0.00 2.83
904 907 5.530543 TGTTAGCATGTGATTCTCAACAACA 59.469 36.000 0.00 0.00 0.00 3.33
905 908 6.000891 TGTTAGCATGTGATTCTCAACAAC 57.999 37.500 0.00 0.00 0.00 3.32
906 909 5.764686 ACTGTTAGCATGTGATTCTCAACAA 59.235 36.000 0.00 0.00 0.00 2.83
907 910 5.308014 ACTGTTAGCATGTGATTCTCAACA 58.692 37.500 0.00 0.00 0.00 3.33
908 911 5.869753 ACTGTTAGCATGTGATTCTCAAC 57.130 39.130 0.00 0.00 0.00 3.18
909 912 6.701340 ACTACTGTTAGCATGTGATTCTCAA 58.299 36.000 0.00 0.00 0.00 3.02
910 913 6.153510 AGACTACTGTTAGCATGTGATTCTCA 59.846 38.462 0.00 0.00 0.00 3.27
911 914 6.568869 AGACTACTGTTAGCATGTGATTCTC 58.431 40.000 0.00 0.00 0.00 2.87
912 915 6.537453 AGACTACTGTTAGCATGTGATTCT 57.463 37.500 0.00 0.00 0.00 2.40
913 916 6.920758 CCTAGACTACTGTTAGCATGTGATTC 59.079 42.308 0.00 0.00 0.00 2.52
914 917 6.381420 ACCTAGACTACTGTTAGCATGTGATT 59.619 38.462 0.00 0.00 0.00 2.57
915 918 5.894393 ACCTAGACTACTGTTAGCATGTGAT 59.106 40.000 0.00 0.00 0.00 3.06
916 919 5.125578 CACCTAGACTACTGTTAGCATGTGA 59.874 44.000 0.00 0.00 0.00 3.58
917 920 5.344066 CACCTAGACTACTGTTAGCATGTG 58.656 45.833 0.00 0.00 0.00 3.21
918 921 4.402793 CCACCTAGACTACTGTTAGCATGT 59.597 45.833 0.00 0.00 0.00 3.21
919 922 4.402793 ACCACCTAGACTACTGTTAGCATG 59.597 45.833 0.00 0.00 0.00 4.06
920 923 4.611367 ACCACCTAGACTACTGTTAGCAT 58.389 43.478 0.00 0.00 0.00 3.79
921 924 4.043608 ACCACCTAGACTACTGTTAGCA 57.956 45.455 0.00 0.00 0.00 3.49
922 925 4.337836 GGTACCACCTAGACTACTGTTAGC 59.662 50.000 7.15 0.00 34.73 3.09
968 971 1.609580 GCCTCCGTGTACATTGTTGGA 60.610 52.381 0.00 1.42 0.00 3.53
970 973 0.802494 GGCCTCCGTGTACATTGTTG 59.198 55.000 0.00 0.00 0.00 3.33
983 986 2.202892 GTCGTTCGATGGGCCTCC 60.203 66.667 4.53 0.00 0.00 4.30
1041 1046 3.427773 GGTAGAGTTGGAGTCGTGATGTC 60.428 52.174 0.00 0.00 0.00 3.06
1042 1047 2.492484 GGTAGAGTTGGAGTCGTGATGT 59.508 50.000 0.00 0.00 0.00 3.06
1043 1048 2.159226 GGGTAGAGTTGGAGTCGTGATG 60.159 54.545 0.00 0.00 0.00 3.07
1044 1049 2.100989 GGGTAGAGTTGGAGTCGTGAT 58.899 52.381 0.00 0.00 0.00 3.06
1045 1050 1.202964 TGGGTAGAGTTGGAGTCGTGA 60.203 52.381 0.00 0.00 0.00 4.35
1046 1051 1.202582 CTGGGTAGAGTTGGAGTCGTG 59.797 57.143 0.00 0.00 0.00 4.35
1174 1179 2.456000 GGAAGAATCGCTTGCGTCA 58.544 52.632 14.70 0.00 36.83 4.35
1180 1185 3.103742 AGAAGGAGAGGAAGAATCGCTT 58.896 45.455 0.00 0.00 40.25 4.68
1253 1258 0.665670 CGGAGTGGATAGCTGATGCG 60.666 60.000 0.00 0.00 45.42 4.73
1426 1432 3.015145 CCATGGTTCCCGGTCCCT 61.015 66.667 2.57 0.00 0.00 4.20
1603 1609 2.038863 TTACATGGTGGTGAGAGGGT 57.961 50.000 0.00 0.00 0.00 4.34
1606 1612 4.220693 TCCAATTACATGGTGGTGAGAG 57.779 45.455 0.00 0.00 41.46 3.20
1607 1613 4.227073 TCATCCAATTACATGGTGGTGAGA 59.773 41.667 0.00 0.00 41.46 3.27
1655 1661 5.991328 TCATACTTTGCTGCTAGTAATGC 57.009 39.130 15.50 0.00 31.20 3.56
1707 1728 5.808366 TGACTGGTCTGAGTAAATCTTGT 57.192 39.130 2.38 0.00 0.00 3.16
1804 1830 9.120538 ACTAAAATATGAATACACCATGGTCAC 57.879 33.333 16.53 5.44 0.00 3.67
1828 1854 8.573885 GGAACCTTGTATGCTAAAACTTAAACT 58.426 33.333 0.00 0.00 0.00 2.66
1829 1855 8.354426 TGGAACCTTGTATGCTAAAACTTAAAC 58.646 33.333 0.00 0.00 0.00 2.01
1830 1856 8.466617 TGGAACCTTGTATGCTAAAACTTAAA 57.533 30.769 0.00 0.00 0.00 1.52
1833 1859 6.969993 TTGGAACCTTGTATGCTAAAACTT 57.030 33.333 0.00 0.00 0.00 2.66
1835 1861 6.156519 CCTTTGGAACCTTGTATGCTAAAAC 58.843 40.000 0.00 0.00 0.00 2.43
1836 1862 5.245075 CCCTTTGGAACCTTGTATGCTAAAA 59.755 40.000 0.00 0.00 0.00 1.52
1845 1871 0.482887 CTCCCCCTTTGGAACCTTGT 59.517 55.000 0.00 0.00 35.39 3.16
2003 2034 6.735145 GCATCTCCAAAAGTTCATCATCATCC 60.735 42.308 0.00 0.00 0.00 3.51
2015 2046 5.491982 ACTAATTCGAGCATCTCCAAAAGT 58.508 37.500 0.00 0.00 0.00 2.66
2042 2073 4.732285 AAGTGCTTGAACGAGTACAATG 57.268 40.909 11.58 0.00 35.08 2.82
2803 3185 9.051679 GTTTTCCTTTTGCAAATACATTAACCT 57.948 29.630 13.65 0.00 0.00 3.50
3038 3931 9.404848 CCACATATATATCATCTTCATTTGCCT 57.595 33.333 0.00 0.00 0.00 4.75
3329 4223 8.970691 AACACATGAGAATTTTATGTAACAGC 57.029 30.769 0.00 0.00 33.57 4.40
3340 4234 8.695456 AGTAAAACCAAGAACACATGAGAATTT 58.305 29.630 0.00 0.00 0.00 1.82
3370 4327 1.621814 TGGTACAGAAAGGAGGAACCG 59.378 52.381 0.00 0.00 44.74 4.44
3388 4345 7.772292 CCCTATATGGAAGATACATGTCAATGG 59.228 40.741 0.00 0.00 36.61 3.16
3397 4354 5.910931 TGGTAGCCCTATATGGAAGATACA 58.089 41.667 0.00 0.00 38.35 2.29
3398 4355 6.686632 GCATGGTAGCCCTATATGGAAGATAC 60.687 46.154 0.00 0.00 38.35 2.24
3518 4475 5.477607 TCGAAGTTATTTCCTGTTCTCCA 57.522 39.130 0.00 0.00 31.82 3.86
3532 4489 9.661563 ATGTAACAATAAGACCATTCGAAGTTA 57.338 29.630 3.35 0.00 0.00 2.24
3534 4491 7.822334 TGATGTAACAATAAGACCATTCGAAGT 59.178 33.333 3.35 0.00 0.00 3.01
3567 4524 5.308825 CACCTCCAAATACTCTTCAGTTGT 58.691 41.667 0.00 0.00 33.62 3.32
3630 4587 2.693591 AGATGGCATTTTCAGGCTCATG 59.306 45.455 0.00 0.00 0.00 3.07
3660 4617 5.217978 TGCTCAATCAATTCTGCCTTTTT 57.782 34.783 0.00 0.00 0.00 1.94
3662 4619 4.525487 TCTTGCTCAATCAATTCTGCCTTT 59.475 37.500 0.00 0.00 0.00 3.11
3674 4631 2.898705 ACCTGTCGATCTTGCTCAATC 58.101 47.619 0.00 0.00 0.00 2.67
3713 4670 9.692749 GCATGCTATAGTTATCTACAACTAACA 57.307 33.333 11.37 1.12 42.63 2.41
3718 4675 8.085296 ACTCAGCATGCTATAGTTATCTACAAC 58.915 37.037 22.19 0.00 34.76 3.32
3721 4678 9.781834 CTAACTCAGCATGCTATAGTTATCTAC 57.218 37.037 33.37 3.07 35.28 2.59
3778 4738 9.459640 GACAACAGAATTCCATGATCAATATTG 57.540 33.333 9.29 9.29 0.00 1.90
3782 4742 7.067129 CAGAGACAACAGAATTCCATGATCAAT 59.933 37.037 0.00 0.00 0.00 2.57
3789 4749 4.025040 TGCAGAGACAACAGAATTCCAT 57.975 40.909 0.65 0.00 0.00 3.41
3806 4766 8.522830 TGAAAACTTAGGGAAGAATAAATGCAG 58.477 33.333 0.00 0.00 36.45 4.41
3817 4777 6.760770 TGCAAACAAATGAAAACTTAGGGAAG 59.239 34.615 0.00 0.00 38.76 3.46
3819 4779 6.227298 TGCAAACAAATGAAAACTTAGGGA 57.773 33.333 0.00 0.00 0.00 4.20
3856 4816 4.218417 GCAGCTCCTGTGGAAAAATTAAGA 59.782 41.667 0.00 0.00 33.43 2.10
3868 4829 3.406764 AGTTTTTCTAGCAGCTCCTGTG 58.593 45.455 0.00 0.00 33.43 3.66
3878 4839 7.539022 GCTTGAAGTCCATTAAGTTTTTCTAGC 59.461 37.037 0.00 0.00 35.82 3.42
3881 4842 7.346751 TGCTTGAAGTCCATTAAGTTTTTCT 57.653 32.000 0.00 0.00 0.00 2.52
3891 4852 1.074405 TCCAGCTGCTTGAAGTCCATT 59.926 47.619 8.66 0.00 0.00 3.16
3895 4856 2.816087 TCATTTCCAGCTGCTTGAAGTC 59.184 45.455 14.71 0.00 0.00 3.01
3897 4858 3.928727 TTCATTTCCAGCTGCTTGAAG 57.071 42.857 14.71 6.38 0.00 3.02
3899 4860 3.638160 ACTTTTCATTTCCAGCTGCTTGA 59.362 39.130 8.66 0.00 0.00 3.02
3910 4871 5.382618 AGCAGTGGATGACTTTTCATTTC 57.617 39.130 0.00 0.00 42.95 2.17
3934 4895 2.555325 TCTGCTGATTGTTTTGCTCCTG 59.445 45.455 0.00 0.00 0.00 3.86
3977 4938 0.463620 TTGCTGGTGTTGGGCTTTTC 59.536 50.000 0.00 0.00 0.00 2.29
3981 4942 2.521708 GGTTGCTGGTGTTGGGCT 60.522 61.111 0.00 0.00 0.00 5.19
4045 5006 7.296628 TCAATGTACTTTGGTAAGCCATTTT 57.703 32.000 18.40 0.00 45.56 1.82
4063 5024 1.615384 GCTGAAGGGAAGGCTCAATGT 60.615 52.381 0.00 0.00 0.00 2.71
4089 5050 7.119553 CCAAAACATGGGATCAAAGTTATTTGG 59.880 37.037 0.00 3.67 46.27 3.28
4263 5225 1.297456 GGAAGTCTGTCTGCAGCAGC 61.297 60.000 24.59 20.28 42.29 5.25
4270 5232 2.996621 GGATCGTTTGGAAGTCTGTCTG 59.003 50.000 0.00 0.00 0.00 3.51
4271 5233 2.632996 TGGATCGTTTGGAAGTCTGTCT 59.367 45.455 0.00 0.00 0.00 3.41
4272 5234 2.996621 CTGGATCGTTTGGAAGTCTGTC 59.003 50.000 0.00 0.00 0.00 3.51
4273 5235 2.632996 TCTGGATCGTTTGGAAGTCTGT 59.367 45.455 0.00 0.00 0.00 3.41
4326 5289 5.975344 CAGCGCAGATTCATATGAAAAACAT 59.025 36.000 21.50 5.24 42.39 2.71
4328 5291 5.453587 GTCAGCGCAGATTCATATGAAAAAC 59.546 40.000 21.50 15.08 37.61 2.43
4338 5301 1.078918 CCCTGTCAGCGCAGATTCA 60.079 57.895 11.47 0.95 38.70 2.57
4339 5302 2.467826 GCCCTGTCAGCGCAGATTC 61.468 63.158 11.47 0.00 38.70 2.52
4347 5310 3.050275 GAACACCGCCCTGTCAGC 61.050 66.667 0.00 0.00 0.00 4.26
4351 5314 2.203294 GTTGGAACACCGCCCTGT 60.203 61.111 0.00 0.00 39.29 4.00
4352 5315 2.203280 TGTTGGAACACCGCCCTG 60.203 61.111 0.00 0.00 39.29 4.45
4400 5364 4.269523 AACGCAAGCTGGAGGGCA 62.270 61.111 0.00 0.00 45.62 5.36
4415 5379 1.405661 GGGTTCATCTGGACGGAGAAC 60.406 57.143 11.62 11.62 38.22 3.01
4436 5400 0.670546 TCTGTTGAACAGCCGCTAGC 60.671 55.000 19.99 4.06 45.54 3.42
4463 5427 4.168291 CAGCTTCCTCGAGGGGCC 62.168 72.222 31.66 21.02 35.88 5.80
4498 5466 0.258484 TACATGTTGGGATGGGCAGG 59.742 55.000 2.30 0.00 0.00 4.85
4499 5467 1.750778 GTTACATGTTGGGATGGGCAG 59.249 52.381 2.30 0.00 0.00 4.85
4501 5469 2.143876 AGTTACATGTTGGGATGGGC 57.856 50.000 2.30 0.00 0.00 5.36
4545 5515 1.811359 AGCGACTAGTATCCCGTATGC 59.189 52.381 0.00 0.00 0.00 3.14
4640 5618 2.397044 AATTTCTCAAACCAGGGGCA 57.603 45.000 0.00 0.00 0.00 5.36
4641 5619 3.832490 ACTAAATTTCTCAAACCAGGGGC 59.168 43.478 0.00 0.00 0.00 5.80
4642 5620 5.538433 TCAACTAAATTTCTCAAACCAGGGG 59.462 40.000 0.00 0.00 0.00 4.79
4646 5626 6.016276 GCCTCTCAACTAAATTTCTCAAACCA 60.016 38.462 0.00 0.00 0.00 3.67
4657 5637 5.248380 AGAACAAGGCCTCTCAACTAAAT 57.752 39.130 5.23 0.00 0.00 1.40
4672 5652 5.309323 TGAACCAACAGAACAAGAACAAG 57.691 39.130 0.00 0.00 0.00 3.16
4682 5662 1.228124 CCCGCCTGAACCAACAGAA 60.228 57.895 0.00 0.00 39.94 3.02
4764 5860 2.603560 GGCATACAGTAGAAACGAGCAC 59.396 50.000 0.00 0.00 0.00 4.40
4772 5868 1.905894 TGTGCAGGGCATACAGTAGAA 59.094 47.619 0.00 0.00 41.91 2.10
4782 5878 0.178995 TCTGAAACATGTGCAGGGCA 60.179 50.000 21.90 6.85 35.60 5.36
4784 5880 3.947910 ATTTCTGAAACATGTGCAGGG 57.052 42.857 21.90 5.79 0.00 4.45
4800 5896 7.148407 CCACTCACTCTACATGGTTTGTATTTC 60.148 40.741 0.00 0.00 40.02 2.17
4806 5902 3.007940 TCCCACTCACTCTACATGGTTTG 59.992 47.826 0.00 0.00 0.00 2.93
4807 5903 3.248024 TCCCACTCACTCTACATGGTTT 58.752 45.455 0.00 0.00 0.00 3.27
4808 5904 2.902608 TCCCACTCACTCTACATGGTT 58.097 47.619 0.00 0.00 0.00 3.67
4809 5905 2.623418 TCCCACTCACTCTACATGGT 57.377 50.000 0.00 0.00 0.00 3.55
4810 5906 2.419297 GCTTCCCACTCACTCTACATGG 60.419 54.545 0.00 0.00 0.00 3.66
4811 5907 2.499289 AGCTTCCCACTCACTCTACATG 59.501 50.000 0.00 0.00 0.00 3.21
4812 5908 2.499289 CAGCTTCCCACTCACTCTACAT 59.501 50.000 0.00 0.00 0.00 2.29
4813 5909 1.895798 CAGCTTCCCACTCACTCTACA 59.104 52.381 0.00 0.00 0.00 2.74
4814 5910 1.896465 ACAGCTTCCCACTCACTCTAC 59.104 52.381 0.00 0.00 0.00 2.59
4815 5911 2.310779 ACAGCTTCCCACTCACTCTA 57.689 50.000 0.00 0.00 0.00 2.43
4816 5912 1.428869 AACAGCTTCCCACTCACTCT 58.571 50.000 0.00 0.00 0.00 3.24
4817 5913 2.147150 GAAACAGCTTCCCACTCACTC 58.853 52.381 0.00 0.00 0.00 3.51
4818 5914 1.490490 TGAAACAGCTTCCCACTCACT 59.510 47.619 0.00 0.00 32.53 3.41
4819 5915 1.876156 CTGAAACAGCTTCCCACTCAC 59.124 52.381 0.00 0.00 32.53 3.51
4820 5916 1.768275 TCTGAAACAGCTTCCCACTCA 59.232 47.619 0.00 0.00 32.53 3.41
4826 5922 4.378874 CCTTTTCGATCTGAAACAGCTTCC 60.379 45.833 10.79 0.00 45.98 3.46
4839 5935 1.298859 ACACCAGCGCCTTTTCGATC 61.299 55.000 2.29 0.00 0.00 3.69
4853 5949 4.329545 GCTCGGCCCTGAACACCA 62.330 66.667 0.00 0.00 0.00 4.17
4854 5950 3.842925 TTGCTCGGCCCTGAACACC 62.843 63.158 0.00 0.00 0.00 4.16
4855 5951 1.675641 ATTGCTCGGCCCTGAACAC 60.676 57.895 0.00 0.00 0.00 3.32
4856 5952 1.675310 CATTGCTCGGCCCTGAACA 60.675 57.895 0.00 0.00 0.00 3.18
4857 5953 1.675641 ACATTGCTCGGCCCTGAAC 60.676 57.895 0.00 0.00 0.00 3.18
4858 5954 1.675310 CACATTGCTCGGCCCTGAA 60.675 57.895 0.00 0.00 0.00 3.02
4859 5955 1.549243 TACACATTGCTCGGCCCTGA 61.549 55.000 0.00 0.00 0.00 3.86
4860 5956 0.676466 TTACACATTGCTCGGCCCTG 60.676 55.000 0.00 0.00 0.00 4.45
4861 5957 0.676782 GTTACACATTGCTCGGCCCT 60.677 55.000 0.00 0.00 0.00 5.19
4862 5958 0.958382 TGTTACACATTGCTCGGCCC 60.958 55.000 0.00 0.00 0.00 5.80
4863 5959 1.094785 ATGTTACACATTGCTCGGCC 58.905 50.000 0.00 0.00 34.67 6.13
4864 5960 1.737236 TCATGTTACACATTGCTCGGC 59.263 47.619 0.00 0.00 36.53 5.54
4865 5961 3.002791 ACTCATGTTACACATTGCTCGG 58.997 45.455 0.00 0.00 36.53 4.63
4866 5962 3.062639 GGACTCATGTTACACATTGCTCG 59.937 47.826 0.00 0.00 36.53 5.03
4867 5963 4.002982 TGGACTCATGTTACACATTGCTC 58.997 43.478 0.00 0.00 36.53 4.26
4874 5970 8.347771 TCTATATTACGTGGACTCATGTTACAC 58.652 37.037 0.00 0.00 42.56 2.90
4888 5984 8.694394 CAGTGACATTGTGATCTATATTACGTG 58.306 37.037 0.00 0.00 0.00 4.49
4905 6001 3.828451 CCTGGGAAATTGACAGTGACATT 59.172 43.478 0.00 0.00 0.00 2.71
4912 6019 4.320494 CGTTTCTTCCTGGGAAATTGACAG 60.320 45.833 3.55 0.00 35.55 3.51
4917 6024 4.072839 GTCTCGTTTCTTCCTGGGAAATT 58.927 43.478 3.55 0.00 35.55 1.82
4921 6028 1.618837 CTGTCTCGTTTCTTCCTGGGA 59.381 52.381 0.00 0.00 0.00 4.37
4934 6041 2.095532 CAGTACGGAACCTACTGTCTCG 59.904 54.545 15.52 0.00 37.42 4.04
4938 6045 0.524862 CGCAGTACGGAACCTACTGT 59.475 55.000 20.29 0.00 42.15 3.55
4939 6046 3.324170 CGCAGTACGGAACCTACTG 57.676 57.895 17.63 17.63 42.76 2.74
4953 6060 2.544685 CATAGAAACCAGAGGACGCAG 58.455 52.381 0.00 0.00 0.00 5.18
4957 6070 9.930693 CTTAATATACCATAGAAACCAGAGGAC 57.069 37.037 0.00 0.00 0.00 3.85
4973 6086 7.862873 AGAAACCGTTACTACGCTTAATATACC 59.137 37.037 0.00 0.00 46.27 2.73
4974 6087 8.685536 CAGAAACCGTTACTACGCTTAATATAC 58.314 37.037 0.00 0.00 46.27 1.47
4975 6088 8.405531 ACAGAAACCGTTACTACGCTTAATATA 58.594 33.333 0.00 0.00 46.27 0.86
4976 6089 7.260603 ACAGAAACCGTTACTACGCTTAATAT 58.739 34.615 0.00 0.00 46.27 1.28
4977 6090 6.620678 ACAGAAACCGTTACTACGCTTAATA 58.379 36.000 0.00 0.00 46.27 0.98
4978 6091 5.473039 ACAGAAACCGTTACTACGCTTAAT 58.527 37.500 0.00 0.00 46.27 1.40
4979 6092 4.870363 ACAGAAACCGTTACTACGCTTAA 58.130 39.130 0.00 0.00 46.27 1.85
4980 6093 4.475944 GACAGAAACCGTTACTACGCTTA 58.524 43.478 0.00 0.00 46.27 3.09
4981 6094 3.311966 GACAGAAACCGTTACTACGCTT 58.688 45.455 0.00 0.00 46.27 4.68
4982 6095 2.352127 GGACAGAAACCGTTACTACGCT 60.352 50.000 0.00 0.00 46.27 5.07
4985 6098 4.813027 TGATGGACAGAAACCGTTACTAC 58.187 43.478 0.00 0.00 0.00 2.73
4987 6100 4.345859 TTGATGGACAGAAACCGTTACT 57.654 40.909 0.00 0.00 0.00 2.24
4989 6102 4.454161 CACATTGATGGACAGAAACCGTTA 59.546 41.667 0.00 0.00 0.00 3.18
4990 6103 3.253188 CACATTGATGGACAGAAACCGTT 59.747 43.478 0.00 0.00 0.00 4.44
4992 6105 2.162208 CCACATTGATGGACAGAAACCG 59.838 50.000 0.00 0.00 43.02 4.44
4994 6107 2.821969 AGCCACATTGATGGACAGAAAC 59.178 45.455 8.80 0.00 43.02 2.78
4995 6108 2.821378 CAGCCACATTGATGGACAGAAA 59.179 45.455 8.80 0.00 43.02 2.52
4999 6112 2.305635 ACTACAGCCACATTGATGGACA 59.694 45.455 8.80 0.00 43.02 4.02
5000 6113 2.991250 ACTACAGCCACATTGATGGAC 58.009 47.619 8.80 2.34 43.02 4.02
5001 6114 3.719268 AACTACAGCCACATTGATGGA 57.281 42.857 8.80 0.00 43.02 3.41
5002 6115 4.943705 ACTAAACTACAGCCACATTGATGG 59.056 41.667 0.00 0.00 43.26 3.51
5003 6116 5.163723 CCACTAAACTACAGCCACATTGATG 60.164 44.000 0.00 0.00 0.00 3.07
5004 6117 4.943705 CCACTAAACTACAGCCACATTGAT 59.056 41.667 0.00 0.00 0.00 2.57
5005 6118 4.202419 ACCACTAAACTACAGCCACATTGA 60.202 41.667 0.00 0.00 0.00 2.57
5095 6208 0.462375 TGTTCGTGATGGATACGGGG 59.538 55.000 0.00 0.00 41.58 5.73
5096 6209 1.134936 TGTGTTCGTGATGGATACGGG 60.135 52.381 0.00 0.00 41.58 5.28
5097 6210 2.287393 TGTGTTCGTGATGGATACGG 57.713 50.000 0.00 0.00 41.58 4.02
5098 6211 4.857871 AAATGTGTTCGTGATGGATACG 57.142 40.909 0.00 0.00 42.56 3.06
5143 6296 3.527533 CTCGTGATGGATACGGGAAAAA 58.472 45.455 0.00 0.00 44.47 1.94
5145 6298 1.202486 GCTCGTGATGGATACGGGAAA 60.202 52.381 1.10 0.00 44.47 3.13
5147 6300 0.753848 TGCTCGTGATGGATACGGGA 60.754 55.000 1.10 0.00 44.47 5.14
5148 6301 0.597637 GTGCTCGTGATGGATACGGG 60.598 60.000 0.00 0.00 44.51 5.28
5150 6303 2.140065 ATGTGCTCGTGATGGATACG 57.860 50.000 0.00 0.00 42.56 3.06
5151 6304 4.882671 AAAATGTGCTCGTGATGGATAC 57.117 40.909 0.00 0.00 0.00 2.24
5152 6305 7.566760 AAATAAAATGTGCTCGTGATGGATA 57.433 32.000 0.00 0.00 0.00 2.59
5153 6306 6.455360 AAATAAAATGTGCTCGTGATGGAT 57.545 33.333 0.00 0.00 0.00 3.41
5154 6307 5.895636 AAATAAAATGTGCTCGTGATGGA 57.104 34.783 0.00 0.00 0.00 3.41
5156 6309 7.565450 TCAAAAATAAAATGTGCTCGTGATG 57.435 32.000 0.00 0.00 0.00 3.07
5157 6310 7.651304 TGTTCAAAAATAAAATGTGCTCGTGAT 59.349 29.630 0.00 0.00 0.00 3.06
5158 6311 6.975197 TGTTCAAAAATAAAATGTGCTCGTGA 59.025 30.769 0.00 0.00 0.00 4.35
5159 6312 7.159437 TGTTCAAAAATAAAATGTGCTCGTG 57.841 32.000 0.00 0.00 0.00 4.35
5160 6313 7.763172 TTGTTCAAAAATAAAATGTGCTCGT 57.237 28.000 0.00 0.00 0.00 4.18
5161 6314 9.483062 TTTTTGTTCAAAAATAAAATGTGCTCG 57.517 25.926 16.24 0.00 36.00 5.03
5184 6370 6.970613 GTGGACAAACTACTCAAATCGTTTTT 59.029 34.615 0.00 0.00 0.00 1.94
5188 6374 4.699637 TGTGGACAAACTACTCAAATCGT 58.300 39.130 0.00 0.00 0.00 3.73
5190 6376 5.560183 CGGTTGTGGACAAACTACTCAAATC 60.560 44.000 6.03 0.00 41.22 2.17
5203 6389 2.515057 AAAGCGCGGTTGTGGACA 60.515 55.556 25.77 0.00 0.00 4.02
5227 6414 7.009631 TGTGTGTGTGTGTGTAAATTTAAATGC 59.990 33.333 0.39 0.00 0.00 3.56
5243 6430 2.563179 GAGGATAGGTCTGTGTGTGTGT 59.437 50.000 0.00 0.00 0.00 3.72
5254 6441 2.293955 GGTAACTGCGAGAGGATAGGTC 59.706 54.545 0.00 0.00 0.00 3.85
5260 6447 2.103432 TGTTTTGGTAACTGCGAGAGGA 59.897 45.455 0.00 0.00 37.61 3.71
5556 6755 3.543536 GATCCTCATCCGGGGCAGC 62.544 68.421 0.00 0.00 0.00 5.25
5635 6834 3.731728 GGAGATGCTGGTGGGGCA 61.732 66.667 0.00 0.00 44.05 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.