Multiple sequence alignment - TraesCS7A01G416100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G416100 chr7A 100.000 3564 0 0 1 3564 608357338 608360901 0.000000e+00 6582.0
1 TraesCS7A01G416100 chr7A 96.364 55 2 0 2689 2743 608360078 608360132 1.360000e-14 91.6
2 TraesCS7A01G416100 chr7D 94.245 1060 43 12 1687 2743 528079766 528080810 0.000000e+00 1604.0
3 TraesCS7A01G416100 chr7D 93.578 872 45 6 676 1543 528078429 528079293 0.000000e+00 1290.0
4 TraesCS7A01G416100 chr7D 83.860 855 74 26 2740 3561 528080758 528081581 0.000000e+00 756.0
5 TraesCS7A01G416100 chr7D 88.136 118 10 2 553 668 528055321 528055436 1.730000e-28 137.0
6 TraesCS7A01G416100 chr7D 80.541 185 28 5 375 552 513211738 513211555 6.210000e-28 135.0
7 TraesCS7A01G416100 chr7D 90.000 70 4 2 1575 1644 528079281 528079347 1.760000e-13 87.9
8 TraesCS7A01G416100 chr7B 92.070 1034 54 13 1687 2707 565576930 565577948 0.000000e+00 1430.0
9 TraesCS7A01G416100 chr7B 91.149 949 43 22 581 1504 565574573 565575505 0.000000e+00 1249.0
10 TraesCS7A01G416100 chr7B 86.737 377 37 5 3178 3543 565578587 565578961 1.190000e-109 407.0
11 TraesCS7A01G416100 chr7B 85.676 370 33 5 1 351 565573820 565574188 4.350000e-99 372.0
12 TraesCS7A01G416100 chr7B 77.083 384 38 29 2789 3156 565578100 565578449 3.660000e-40 176.0
13 TraesCS7A01G416100 chr4D 76.617 603 91 39 1696 2256 484400492 484401086 1.620000e-73 287.0
14 TraesCS7A01G416100 chr6D 85.000 240 30 6 2066 2302 330157606 330157370 4.600000e-59 239.0
15 TraesCS7A01G416100 chr6D 84.492 187 23 4 372 552 418770985 418770799 2.830000e-41 180.0
16 TraesCS7A01G416100 chr6D 94.624 93 5 0 2789 2881 63710471 63710379 1.030000e-30 145.0
17 TraesCS7A01G416100 chr6A 85.062 241 28 8 2066 2302 469432325 469432089 4.600000e-59 239.0
18 TraesCS7A01G416100 chr6A 89.143 175 15 3 2067 2239 570382522 570382350 7.750000e-52 215.0
19 TraesCS7A01G416100 chr6A 89.720 107 8 3 2777 2880 99206874 99206768 2.230000e-27 134.0
20 TraesCS7A01G416100 chr6B 84.167 240 32 6 2066 2302 490255653 490255889 9.950000e-56 228.0
21 TraesCS7A01G416100 chr2D 80.247 243 36 11 2066 2302 516370453 516370689 4.730000e-39 172.0
22 TraesCS7A01G416100 chr2D 95.604 91 3 1 2788 2877 204498963 204499053 1.030000e-30 145.0
23 TraesCS7A01G416100 chr5D 83.607 183 23 5 376 551 462454618 462454800 7.920000e-37 165.0
24 TraesCS7A01G416100 chr5D 82.967 182 27 4 375 552 498084097 498083916 1.020000e-35 161.0
25 TraesCS7A01G416100 chr5D 83.230 161 21 2 375 529 249258079 249257919 3.710000e-30 143.0
26 TraesCS7A01G416100 chr2B 79.424 243 38 11 2066 2302 607953250 607953486 1.020000e-35 161.0
27 TraesCS7A01G416100 chr2B 95.833 96 2 2 2789 2884 258656080 258656173 1.710000e-33 154.0
28 TraesCS7A01G416100 chr2A 79.424 243 38 11 2066 2302 660224056 660224292 1.020000e-35 161.0
29 TraesCS7A01G416100 chr1D 83.146 178 26 4 377 552 263194892 263194717 3.680000e-35 159.0
30 TraesCS7A01G416100 chr3A 82.967 182 22 6 372 547 550706639 550706817 4.760000e-34 156.0
31 TraesCS7A01G416100 chr5A 82.682 179 24 5 375 547 491750185 491750362 6.160000e-33 152.0
32 TraesCS7A01G416100 chr5A 80.392 153 22 6 1696 1841 664807292 664807443 3.760000e-20 110.0
33 TraesCS7A01G416100 chr1B 82.162 185 26 7 375 555 548294641 548294460 6.160000e-33 152.0
34 TraesCS7A01G416100 chr1B 94.565 92 4 1 2789 2880 629262000 629262090 1.330000e-29 141.0
35 TraesCS7A01G416100 chr3D 92.857 98 4 3 2789 2884 35660694 35660598 4.800000e-29 139.0
36 TraesCS7A01G416100 chr1A 91.346 104 5 4 2801 2903 335544512 335544612 4.800000e-29 139.0
37 TraesCS7A01G416100 chr4B 80.606 165 23 7 1697 1854 616303878 616304040 6.250000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G416100 chr7A 608357338 608360901 3563 False 3336.800 6582 98.18200 1 3564 2 chr7A.!!$F1 3563
1 TraesCS7A01G416100 chr7D 528078429 528081581 3152 False 934.475 1604 90.42075 676 3561 4 chr7D.!!$F2 2885
2 TraesCS7A01G416100 chr7B 565573820 565578961 5141 False 726.800 1430 86.54300 1 3543 5 chr7B.!!$F1 3542
3 TraesCS7A01G416100 chr4D 484400492 484401086 594 False 287.000 287 76.61700 1696 2256 1 chr4D.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 192 0.249120 TAGGCACCAACATCGTCAGG 59.751 55.0 0.00 0.00 0.0 3.86 F
228 239 0.881159 TAACCGCACAAAGTCCACCG 60.881 55.0 0.00 0.00 0.0 4.94 F
1084 1460 0.036875 GCAAGTCCAAGGTACCAGCT 59.963 55.0 15.94 1.31 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1435 0.035739 TACCTTGGACTTGCGGTTCC 59.964 55.0 0.00 0.0 0.00 3.62 R
2032 3882 0.905357 CGAGGAGGATGTTGGAGGTT 59.095 55.0 0.00 0.0 0.00 3.50 R
3020 4973 0.040067 GAAAAGGCGCTGGTGTTCAG 60.040 55.0 7.64 0.0 46.03 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 27 3.791245 CTGAAAGGGACATGCTCTAGAC 58.209 50.000 0.00 0.00 0.00 2.59
30 33 2.216898 GGACATGCTCTAGACAATGCC 58.783 52.381 9.02 8.01 0.00 4.40
39 42 2.768527 TCTAGACAATGCCTCCAAGGAG 59.231 50.000 9.20 9.20 37.67 3.69
54 57 1.853963 AGGAGTGAAGATGCTACGGT 58.146 50.000 0.00 0.00 0.00 4.83
103 106 1.273327 CCAATGGTTTTCACCCAGAGC 59.727 52.381 0.00 0.00 43.49 4.09
112 115 4.002006 ACCCAGAGCCAAAGGTGA 57.998 55.556 0.00 0.00 0.00 4.02
124 127 2.558359 CCAAAGGTGAAGGATGACAACC 59.442 50.000 0.00 0.00 0.00 3.77
129 132 2.154462 GTGAAGGATGACAACCCACAG 58.846 52.381 0.00 0.00 0.00 3.66
153 156 3.746957 CTCCAGGGAGGGGAAAGG 58.253 66.667 7.48 0.00 42.25 3.11
154 157 1.082954 CTCCAGGGAGGGGAAAGGA 59.917 63.158 7.48 0.00 42.25 3.36
155 158 1.229853 TCCAGGGAGGGGAAAGGAC 60.230 63.158 0.00 0.00 38.24 3.85
156 159 1.541368 CCAGGGAGGGGAAAGGACA 60.541 63.158 0.00 0.00 0.00 4.02
166 169 1.072331 GGGAAAGGACACTCAAGAGCA 59.928 52.381 0.00 0.00 0.00 4.26
184 187 1.265095 GCATCATAGGCACCAACATCG 59.735 52.381 0.00 0.00 0.00 3.84
187 190 1.552792 TCATAGGCACCAACATCGTCA 59.447 47.619 0.00 0.00 0.00 4.35
189 192 0.249120 TAGGCACCAACATCGTCAGG 59.751 55.000 0.00 0.00 0.00 3.86
204 215 2.796383 CGTCAGGCTGAGTTAGAATCGG 60.796 54.545 19.38 0.00 0.00 4.18
209 220 1.134670 GCTGAGTTAGAATCGGCCACT 60.135 52.381 2.24 0.00 42.18 4.00
211 222 3.430374 GCTGAGTTAGAATCGGCCACTAA 60.430 47.826 2.24 4.13 42.18 2.24
213 224 3.118884 TGAGTTAGAATCGGCCACTAACC 60.119 47.826 23.18 18.09 43.68 2.85
225 236 1.588674 CACTAACCGCACAAAGTCCA 58.411 50.000 0.00 0.00 0.00 4.02
228 239 0.881159 TAACCGCACAAAGTCCACCG 60.881 55.000 0.00 0.00 0.00 4.94
230 241 2.590575 CGCACAAAGTCCACCGGT 60.591 61.111 0.00 0.00 0.00 5.28
238 249 2.603776 GTCCACCGGTCACCCTCT 60.604 66.667 2.59 0.00 0.00 3.69
254 274 4.038522 CACCCTCTGATCGAGATTACATGT 59.961 45.833 2.69 2.69 42.62 3.21
297 317 1.040646 TGAGCGACTCCAACTTCACT 58.959 50.000 4.73 0.00 0.00 3.41
299 319 2.229062 TGAGCGACTCCAACTTCACTAG 59.771 50.000 4.73 0.00 0.00 2.57
306 326 1.771854 TCCAACTTCACTAGGCCAACA 59.228 47.619 5.01 0.00 0.00 3.33
320 340 5.549742 AGGCCAACAAAGAAATTGAATCA 57.450 34.783 5.01 0.00 41.85 2.57
351 371 6.794374 TGCATCTATATTTGTGCGAAAATGT 58.206 32.000 6.66 3.35 40.34 2.71
352 372 7.924940 TGCATCTATATTTGTGCGAAAATGTA 58.075 30.769 6.66 4.19 40.34 2.29
353 373 8.567104 TGCATCTATATTTGTGCGAAAATGTAT 58.433 29.630 6.66 0.00 40.34 2.29
360 380 5.705813 TTGTGCGAAAATGTATACCTACG 57.294 39.130 0.00 1.20 0.00 3.51
361 381 3.552699 TGTGCGAAAATGTATACCTACGC 59.447 43.478 16.74 16.74 43.98 4.42
363 383 4.985044 GCGAAAATGTATACCTACGCAT 57.015 40.909 17.86 0.00 43.35 4.73
365 385 6.456447 GCGAAAATGTATACCTACGCATAA 57.544 37.500 17.86 0.00 43.35 1.90
366 386 6.294363 GCGAAAATGTATACCTACGCATAAC 58.706 40.000 17.86 0.00 43.35 1.89
367 387 6.145048 GCGAAAATGTATACCTACGCATAACT 59.855 38.462 17.86 0.00 43.35 2.24
378 398 7.814264 ACCTACGCATAACTTACTATACAGT 57.186 36.000 0.00 0.00 38.91 3.55
379 399 7.869800 ACCTACGCATAACTTACTATACAGTC 58.130 38.462 0.00 0.00 36.14 3.51
380 400 7.718753 ACCTACGCATAACTTACTATACAGTCT 59.281 37.037 0.00 0.00 36.14 3.24
381 401 8.566260 CCTACGCATAACTTACTATACAGTCTT 58.434 37.037 0.00 0.00 36.14 3.01
382 402 9.383462 CTACGCATAACTTACTATACAGTCTTG 57.617 37.037 0.00 0.00 36.14 3.02
383 403 6.696148 ACGCATAACTTACTATACAGTCTTGC 59.304 38.462 0.00 0.00 36.14 4.01
384 404 6.918569 CGCATAACTTACTATACAGTCTTGCT 59.081 38.462 0.00 0.00 36.14 3.91
385 405 8.074370 CGCATAACTTACTATACAGTCTTGCTA 58.926 37.037 0.00 0.00 36.14 3.49
386 406 9.745880 GCATAACTTACTATACAGTCTTGCTAA 57.254 33.333 0.00 0.00 36.14 3.09
390 410 8.810990 ACTTACTATACAGTCTTGCTAAGTCT 57.189 34.615 0.00 0.00 36.14 3.24
391 411 8.895737 ACTTACTATACAGTCTTGCTAAGTCTC 58.104 37.037 0.00 0.00 36.14 3.36
392 412 8.803397 TTACTATACAGTCTTGCTAAGTCTCA 57.197 34.615 0.00 0.00 36.14 3.27
393 413 7.328277 ACTATACAGTCTTGCTAAGTCTCAG 57.672 40.000 0.00 0.00 0.00 3.35
394 414 6.887545 ACTATACAGTCTTGCTAAGTCTCAGT 59.112 38.462 0.00 0.00 0.00 3.41
395 415 4.513198 ACAGTCTTGCTAAGTCTCAGTC 57.487 45.455 0.00 0.00 0.00 3.51
396 416 3.057876 ACAGTCTTGCTAAGTCTCAGTCG 60.058 47.826 0.00 0.00 0.00 4.18
397 417 3.189495 CAGTCTTGCTAAGTCTCAGTCGA 59.811 47.826 0.00 0.00 0.00 4.20
398 418 3.189702 AGTCTTGCTAAGTCTCAGTCGAC 59.810 47.826 7.70 7.70 0.00 4.20
399 419 3.189702 GTCTTGCTAAGTCTCAGTCGACT 59.810 47.826 13.58 13.58 45.73 4.18
400 420 3.189495 TCTTGCTAAGTCTCAGTCGACTG 59.811 47.826 34.76 34.76 43.14 3.51
412 432 2.896243 GTCGACTGAGACTTCGCTAA 57.104 50.000 8.70 0.00 38.09 3.09
413 433 3.198863 GTCGACTGAGACTTCGCTAAA 57.801 47.619 8.70 0.00 38.09 1.85
414 434 3.760537 GTCGACTGAGACTTCGCTAAAT 58.239 45.455 8.70 0.00 38.09 1.40
415 435 3.787105 GTCGACTGAGACTTCGCTAAATC 59.213 47.826 8.70 0.00 38.09 2.17
416 436 3.690139 TCGACTGAGACTTCGCTAAATCT 59.310 43.478 0.00 0.00 35.15 2.40
417 437 4.032355 CGACTGAGACTTCGCTAAATCTC 58.968 47.826 2.72 2.72 38.46 2.75
418 438 4.437524 CGACTGAGACTTCGCTAAATCTCA 60.438 45.833 11.10 11.10 44.05 3.27
421 441 4.987832 TGAGACTTCGCTAAATCTCAGTC 58.012 43.478 7.93 0.00 41.99 3.51
422 442 4.022464 AGACTTCGCTAAATCTCAGTCG 57.978 45.455 0.00 0.00 36.56 4.18
423 443 3.690139 AGACTTCGCTAAATCTCAGTCGA 59.310 43.478 0.00 0.00 36.56 4.20
424 444 4.336993 AGACTTCGCTAAATCTCAGTCGAT 59.663 41.667 0.00 0.00 36.56 3.59
425 445 4.355437 ACTTCGCTAAATCTCAGTCGATG 58.645 43.478 0.00 0.00 0.00 3.84
426 446 4.142359 ACTTCGCTAAATCTCAGTCGATGT 60.142 41.667 0.00 0.00 31.67 3.06
427 447 4.371855 TCGCTAAATCTCAGTCGATGTT 57.628 40.909 0.00 0.00 0.00 2.71
428 448 5.494632 TCGCTAAATCTCAGTCGATGTTA 57.505 39.130 0.00 0.00 0.00 2.41
429 449 6.073327 TCGCTAAATCTCAGTCGATGTTAT 57.927 37.500 0.00 0.00 0.00 1.89
430 450 7.198306 TCGCTAAATCTCAGTCGATGTTATA 57.802 36.000 0.00 0.00 0.00 0.98
431 451 7.817641 TCGCTAAATCTCAGTCGATGTTATAT 58.182 34.615 0.00 0.00 0.00 0.86
432 452 7.963465 TCGCTAAATCTCAGTCGATGTTATATC 59.037 37.037 0.00 0.00 0.00 1.63
433 453 7.219154 CGCTAAATCTCAGTCGATGTTATATCC 59.781 40.741 0.00 0.00 0.00 2.59
434 454 8.029522 GCTAAATCTCAGTCGATGTTATATCCA 58.970 37.037 0.00 0.00 0.00 3.41
439 459 8.863872 TCTCAGTCGATGTTATATCCATAAGA 57.136 34.615 0.00 0.00 0.00 2.10
440 460 9.467796 TCTCAGTCGATGTTATATCCATAAGAT 57.532 33.333 0.00 0.00 34.27 2.40
507 527 9.944663 TTTCTTTTGTATGTTATGTCACTTGAC 57.055 29.630 2.19 2.19 44.97 3.18
508 528 8.094798 TCTTTTGTATGTTATGTCACTTGACC 57.905 34.615 6.91 0.00 44.15 4.02
509 529 7.717436 TCTTTTGTATGTTATGTCACTTGACCA 59.283 33.333 6.91 0.00 44.15 4.02
510 530 7.809546 TTTGTATGTTATGTCACTTGACCAA 57.190 32.000 6.91 0.00 44.15 3.67
511 531 7.433708 TTGTATGTTATGTCACTTGACCAAG 57.566 36.000 6.91 8.11 44.15 3.61
512 532 6.764379 TGTATGTTATGTCACTTGACCAAGA 58.236 36.000 15.84 0.91 44.15 3.02
513 533 6.649141 TGTATGTTATGTCACTTGACCAAGAC 59.351 38.462 15.84 6.07 44.15 3.01
514 534 5.290493 TGTTATGTCACTTGACCAAGACT 57.710 39.130 15.84 0.00 44.15 3.24
515 535 5.680619 TGTTATGTCACTTGACCAAGACTT 58.319 37.500 15.84 6.34 44.15 3.01
516 536 5.527214 TGTTATGTCACTTGACCAAGACTTG 59.473 40.000 15.84 8.31 44.15 3.16
530 550 5.230182 CCAAGACTTGGTTAAATTTCAGCC 58.770 41.667 23.92 0.00 45.93 4.85
531 551 5.221422 CCAAGACTTGGTTAAATTTCAGCCA 60.221 40.000 23.92 0.00 45.93 4.75
532 552 6.279882 CAAGACTTGGTTAAATTTCAGCCAA 58.720 36.000 7.35 15.60 37.60 4.52
533 553 6.670695 AGACTTGGTTAAATTTCAGCCAAT 57.329 33.333 16.34 10.01 38.37 3.16
534 554 7.066307 AGACTTGGTTAAATTTCAGCCAATT 57.934 32.000 16.34 12.84 38.37 2.32
535 555 6.930722 AGACTTGGTTAAATTTCAGCCAATTG 59.069 34.615 16.34 0.00 38.37 2.32
536 556 6.825610 ACTTGGTTAAATTTCAGCCAATTGA 58.174 32.000 7.12 0.00 38.37 2.57
537 557 6.930722 ACTTGGTTAAATTTCAGCCAATTGAG 59.069 34.615 7.12 10.31 38.37 3.02
538 558 6.662865 TGGTTAAATTTCAGCCAATTGAGA 57.337 33.333 7.12 0.00 0.00 3.27
539 559 6.454795 TGGTTAAATTTCAGCCAATTGAGAC 58.545 36.000 7.12 0.00 0.00 3.36
540 560 5.869344 GGTTAAATTTCAGCCAATTGAGACC 59.131 40.000 7.12 0.00 0.00 3.85
541 561 6.295292 GGTTAAATTTCAGCCAATTGAGACCT 60.295 38.462 7.12 0.00 0.00 3.85
542 562 7.093945 GGTTAAATTTCAGCCAATTGAGACCTA 60.094 37.037 7.12 0.00 0.00 3.08
543 563 8.470002 GTTAAATTTCAGCCAATTGAGACCTAT 58.530 33.333 7.12 0.00 0.00 2.57
544 564 6.705863 AATTTCAGCCAATTGAGACCTATC 57.294 37.500 7.12 0.00 0.00 2.08
545 565 3.845781 TCAGCCAATTGAGACCTATCC 57.154 47.619 7.12 0.00 0.00 2.59
546 566 3.114606 TCAGCCAATTGAGACCTATCCA 58.885 45.455 7.12 0.00 0.00 3.41
547 567 3.718434 TCAGCCAATTGAGACCTATCCAT 59.282 43.478 7.12 0.00 0.00 3.41
548 568 4.907269 TCAGCCAATTGAGACCTATCCATA 59.093 41.667 7.12 0.00 0.00 2.74
549 569 4.999950 CAGCCAATTGAGACCTATCCATAC 59.000 45.833 7.12 0.00 0.00 2.39
550 570 4.042187 AGCCAATTGAGACCTATCCATACC 59.958 45.833 7.12 0.00 0.00 2.73
551 571 4.807643 GCCAATTGAGACCTATCCATACCC 60.808 50.000 7.12 0.00 0.00 3.69
557 577 4.422592 TGAGACCTATCCATACCCCTTACT 59.577 45.833 0.00 0.00 0.00 2.24
568 588 7.729116 TCCATACCCCTTACTAAATTCTTACG 58.271 38.462 0.00 0.00 0.00 3.18
569 589 7.345392 TCCATACCCCTTACTAAATTCTTACGT 59.655 37.037 0.00 0.00 0.00 3.57
570 590 8.641541 CCATACCCCTTACTAAATTCTTACGTA 58.358 37.037 0.00 0.00 0.00 3.57
593 948 9.197694 CGTAACATTCCTATAATCTCTTTCCAG 57.802 37.037 0.00 0.00 0.00 3.86
599 954 3.872459 ATAATCTCTTTCCAGCCCCTG 57.128 47.619 0.00 0.00 0.00 4.45
609 964 1.180029 CCAGCCCCTGATTTCAACTG 58.820 55.000 0.00 0.00 32.44 3.16
612 967 0.890683 GCCCCTGATTTCAACTGTGG 59.109 55.000 0.00 0.00 0.00 4.17
614 969 0.890683 CCCTGATTTCAACTGTGGGC 59.109 55.000 0.00 0.00 0.00 5.36
615 970 0.890683 CCTGATTTCAACTGTGGGCC 59.109 55.000 0.00 0.00 0.00 5.80
650 1005 7.288810 TGATTACATCCAATCAAAATAGCCC 57.711 36.000 0.00 0.00 40.95 5.19
655 1010 3.364549 TCCAATCAAAATAGCCCACCTG 58.635 45.455 0.00 0.00 0.00 4.00
660 1015 2.025037 TCAAAATAGCCCACCTGATGCT 60.025 45.455 0.00 0.00 39.10 3.79
664 1019 3.498774 ATAGCCCACCTGATGCTTTAG 57.501 47.619 0.00 0.00 36.57 1.85
668 1023 2.158608 GCCCACCTGATGCTTTAGGTAT 60.159 50.000 14.73 0.00 45.26 2.73
669 1024 3.688414 GCCCACCTGATGCTTTAGGTATT 60.688 47.826 14.73 0.00 45.26 1.89
670 1025 3.885297 CCCACCTGATGCTTTAGGTATTG 59.115 47.826 14.73 7.55 45.26 1.90
671 1026 4.526970 CCACCTGATGCTTTAGGTATTGT 58.473 43.478 14.73 0.00 45.26 2.71
674 1029 6.601613 CCACCTGATGCTTTAGGTATTGTTAA 59.398 38.462 14.73 0.00 45.26 2.01
727 1098 1.266718 TGGACGCTTTGCTTCATTCAC 59.733 47.619 0.00 0.00 0.00 3.18
934 1305 2.816360 CTCGTACGTCGGCCGATCA 61.816 63.158 33.58 16.71 40.70 2.92
966 1337 2.300967 CCAGCCTGCAGACCCCTAA 61.301 63.158 17.39 0.00 0.00 2.69
969 1340 2.971598 GCCTGCAGACCCCTAAGCA 61.972 63.158 17.39 0.00 35.43 3.91
976 1347 3.584868 GACCCCTAAGCACGCACGT 62.585 63.158 0.00 0.00 0.00 4.49
1081 1457 1.373435 CCGCAAGTCCAAGGTACCA 59.627 57.895 15.94 0.00 0.00 3.25
1084 1460 0.036875 GCAAGTCCAAGGTACCAGCT 59.963 55.000 15.94 1.31 0.00 4.24
1085 1461 1.813513 CAAGTCCAAGGTACCAGCTG 58.186 55.000 15.94 6.78 0.00 4.24
1086 1462 0.036875 AAGTCCAAGGTACCAGCTGC 59.963 55.000 15.94 1.06 0.00 5.25
1087 1463 1.127567 AGTCCAAGGTACCAGCTGCA 61.128 55.000 15.94 0.00 0.00 4.41
1171 1547 2.351774 CGCGCACGCTCTAGAGAG 60.352 66.667 24.24 22.27 44.75 3.20
1172 1548 2.795297 GCGCACGCTCTAGAGAGT 59.205 61.111 24.24 22.99 43.85 3.24
1183 1560 5.078411 GCTCTAGAGAGTGACATTTTGGA 57.922 43.478 24.24 0.00 43.85 3.53
1388 1765 1.452651 CAGCCCCACGCAGATCATT 60.453 57.895 0.00 0.00 41.38 2.57
1425 1802 1.246056 CGTCGTCTACAAGGGGGTCA 61.246 60.000 0.00 0.00 0.00 4.02
1509 1890 2.565391 TGGCTGGTCAGTTTCTATCGAA 59.435 45.455 0.00 0.00 0.00 3.71
1512 1893 4.034510 GGCTGGTCAGTTTCTATCGAAATG 59.965 45.833 0.00 0.00 40.91 2.32
1516 1897 7.652105 GCTGGTCAGTTTCTATCGAAATGTATA 59.348 37.037 0.00 0.00 40.91 1.47
1530 1911 7.958088 TCGAAATGTATAATCCACTATCACCA 58.042 34.615 0.00 0.00 0.00 4.17
1531 1912 8.425703 TCGAAATGTATAATCCACTATCACCAA 58.574 33.333 0.00 0.00 0.00 3.67
1532 1913 9.219603 CGAAATGTATAATCCACTATCACCAAT 57.780 33.333 0.00 0.00 0.00 3.16
1536 1917 8.902540 TGTATAATCCACTATCACCAATTCAC 57.097 34.615 0.00 0.00 0.00 3.18
1537 1918 8.713971 TGTATAATCCACTATCACCAATTCACT 58.286 33.333 0.00 0.00 0.00 3.41
1538 1919 9.209175 GTATAATCCACTATCACCAATTCACTC 57.791 37.037 0.00 0.00 0.00 3.51
1539 1920 5.965033 ATCCACTATCACCAATTCACTCT 57.035 39.130 0.00 0.00 0.00 3.24
1540 1921 5.762179 TCCACTATCACCAATTCACTCTT 57.238 39.130 0.00 0.00 0.00 2.85
1541 1922 6.126863 TCCACTATCACCAATTCACTCTTT 57.873 37.500 0.00 0.00 0.00 2.52
1542 1923 7.252612 TCCACTATCACCAATTCACTCTTTA 57.747 36.000 0.00 0.00 0.00 1.85
1543 1924 7.861629 TCCACTATCACCAATTCACTCTTTAT 58.138 34.615 0.00 0.00 0.00 1.40
1544 1925 7.770433 TCCACTATCACCAATTCACTCTTTATG 59.230 37.037 0.00 0.00 0.00 1.90
1545 1926 7.012704 CCACTATCACCAATTCACTCTTTATGG 59.987 40.741 0.00 0.00 0.00 2.74
1546 1927 7.770433 CACTATCACCAATTCACTCTTTATGGA 59.230 37.037 0.00 0.00 0.00 3.41
1547 1928 8.328758 ACTATCACCAATTCACTCTTTATGGAA 58.671 33.333 0.00 0.00 0.00 3.53
1548 1929 9.177608 CTATCACCAATTCACTCTTTATGGAAA 57.822 33.333 0.00 0.00 0.00 3.13
1615 2002 2.287393 AACACGGGAAGTTGCAAAAC 57.713 45.000 0.00 0.00 0.00 2.43
1616 2003 1.178276 ACACGGGAAGTTGCAAAACA 58.822 45.000 0.00 0.00 0.00 2.83
1617 2004 1.546476 ACACGGGAAGTTGCAAAACAA 59.454 42.857 0.00 0.00 35.33 2.83
1618 2005 2.028930 ACACGGGAAGTTGCAAAACAAA 60.029 40.909 0.00 0.00 40.82 2.83
1619 2006 2.996621 CACGGGAAGTTGCAAAACAAAA 59.003 40.909 0.00 0.00 40.82 2.44
1620 2007 3.433615 CACGGGAAGTTGCAAAACAAAAA 59.566 39.130 0.00 0.00 40.82 1.94
1621 2008 4.094146 CACGGGAAGTTGCAAAACAAAAAT 59.906 37.500 0.00 0.00 40.82 1.82
1628 2015 5.871539 AGTTGCAAAACAAAAATCTGCTTG 58.128 33.333 0.00 0.00 40.82 4.01
1634 2021 6.183360 GCAAAACAAAAATCTGCTTGGAAGAA 60.183 34.615 0.00 0.00 0.00 2.52
1644 2031 4.576463 TCTGCTTGGAAGAAAGTGAGTTTC 59.424 41.667 4.61 4.61 44.48 2.78
1646 2033 3.304057 GCTTGGAAGAAAGTGAGTTTCCG 60.304 47.826 9.03 0.00 45.16 4.30
1660 2055 6.645415 AGTGAGTTTCCGTGTAAGATACAAAG 59.355 38.462 0.00 0.00 40.93 2.77
1679 2083 6.133356 ACAAAGGGATTTTTAGTCAGGTTCA 58.867 36.000 0.00 0.00 0.00 3.18
1702 3472 1.131883 GATCTTGTGTGCATGCAGACC 59.868 52.381 36.40 21.53 39.16 3.85
1860 3636 1.072505 ACACCCACACCAACGATCC 59.927 57.895 0.00 0.00 0.00 3.36
1861 3637 1.674322 CACCCACACCAACGATCCC 60.674 63.158 0.00 0.00 0.00 3.85
1890 3666 5.352569 ACTTCTTACATACTGCATGCTGAAC 59.647 40.000 28.74 0.00 38.29 3.18
1906 3682 3.503363 GCTGAACATCTGTTTCATCACCA 59.497 43.478 0.00 0.00 38.56 4.17
1945 3795 1.073025 GTGCACCCTGTCATGGACA 59.927 57.895 5.22 0.00 40.50 4.02
2032 3882 3.186909 CATCATCTACCGCGACTTCAAA 58.813 45.455 8.23 0.00 0.00 2.69
2247 4097 3.731728 GGAGATGCTGGTGGGGCA 61.732 66.667 0.00 0.00 44.05 5.36
2326 4176 3.543536 GATCCTCATCCGGGGCAGC 62.544 68.421 0.00 0.00 0.00 5.25
2622 4484 2.103432 TGTTTTGGTAACTGCGAGAGGA 59.897 45.455 0.00 0.00 37.61 3.71
2623 4485 3.244422 TGTTTTGGTAACTGCGAGAGGAT 60.244 43.478 0.00 0.00 37.61 3.24
2624 4486 4.020928 TGTTTTGGTAACTGCGAGAGGATA 60.021 41.667 0.00 0.00 37.61 2.59
2626 4488 2.307768 TGGTAACTGCGAGAGGATAGG 58.692 52.381 0.00 0.00 37.61 2.57
2627 4489 2.308690 GGTAACTGCGAGAGGATAGGT 58.691 52.381 0.00 0.00 0.00 3.08
2628 4490 2.293955 GGTAACTGCGAGAGGATAGGTC 59.706 54.545 0.00 0.00 0.00 3.85
2639 4501 2.563179 GAGGATAGGTCTGTGTGTGTGT 59.437 50.000 0.00 0.00 0.00 3.72
2655 4517 7.009631 TGTGTGTGTGTGTGTAAATTTAAATGC 59.990 33.333 0.39 0.00 0.00 3.56
2679 4542 2.515057 AAAGCGCGGTTGTGGACA 60.515 55.556 25.77 0.00 0.00 4.02
2692 4555 5.560183 CGGTTGTGGACAAACTACTCAAATC 60.560 44.000 6.03 0.00 41.22 2.17
2694 4557 4.699637 TGTGGACAAACTACTCAAATCGT 58.300 39.130 0.00 0.00 0.00 3.73
2698 4561 6.970613 GTGGACAAACTACTCAAATCGTTTTT 59.029 34.615 0.00 0.00 0.00 1.94
2723 4586 7.159437 TGTTCAAAAATAAAATGTGCTCGTG 57.841 32.000 0.00 0.00 0.00 4.35
2724 4587 6.975197 TGTTCAAAAATAAAATGTGCTCGTGA 59.025 30.769 0.00 0.00 0.00 4.35
2725 4588 7.651304 TGTTCAAAAATAAAATGTGCTCGTGAT 59.349 29.630 0.00 0.00 0.00 3.06
2726 4589 7.565450 TCAAAAATAAAATGTGCTCGTGATG 57.435 32.000 0.00 0.00 0.00 3.07
2730 4593 7.566760 AAATAAAATGTGCTCGTGATGGATA 57.433 32.000 0.00 0.00 0.00 2.59
2731 4594 4.882671 AAAATGTGCTCGTGATGGATAC 57.117 40.909 0.00 0.00 0.00 2.24
2733 4596 0.102300 TGTGCTCGTGATGGATACGG 59.898 55.000 0.00 0.00 41.58 4.02
2734 4597 0.597637 GTGCTCGTGATGGATACGGG 60.598 60.000 0.00 0.00 44.51 5.28
2736 4599 0.387929 GCTCGTGATGGATACGGGAA 59.612 55.000 1.10 0.00 44.47 3.97
2784 4680 4.857871 AAATGTGTTCGTGATGGATACG 57.142 40.909 0.00 0.00 42.56 3.06
2785 4681 2.287393 TGTGTTCGTGATGGATACGG 57.713 50.000 0.00 0.00 41.58 4.02
2786 4682 1.134936 TGTGTTCGTGATGGATACGGG 60.135 52.381 0.00 0.00 41.58 5.28
2787 4683 0.462375 TGTTCGTGATGGATACGGGG 59.538 55.000 0.00 0.00 41.58 5.73
2792 4688 2.236644 TCGTGATGGATACGGGGAAAAA 59.763 45.455 0.00 0.00 41.58 1.94
2877 4813 4.202419 ACCACTAAACTACAGCCACATTGA 60.202 41.667 0.00 0.00 0.00 2.57
2884 4820 1.830279 ACAGCCACATTGATGGACAG 58.170 50.000 8.80 2.03 43.02 3.51
2886 4822 2.224843 ACAGCCACATTGATGGACAGAA 60.225 45.455 8.80 0.00 43.02 3.02
2891 4827 2.813754 CACATTGATGGACAGAAACCGT 59.186 45.455 0.00 0.00 0.00 4.83
2893 4829 4.454161 CACATTGATGGACAGAAACCGTTA 59.546 41.667 0.00 0.00 0.00 3.18
2895 4831 4.345859 TTGATGGACAGAAACCGTTACT 57.654 40.909 0.00 0.00 0.00 2.24
2897 4833 4.813027 TGATGGACAGAAACCGTTACTAC 58.187 43.478 0.00 0.00 0.00 2.73
2901 4837 3.311966 GACAGAAACCGTTACTACGCTT 58.688 45.455 0.00 0.00 46.27 4.68
2902 4838 4.475944 GACAGAAACCGTTACTACGCTTA 58.524 43.478 0.00 0.00 46.27 3.09
2904 4840 5.473039 ACAGAAACCGTTACTACGCTTAAT 58.527 37.500 0.00 0.00 46.27 1.40
2905 4841 6.620678 ACAGAAACCGTTACTACGCTTAATA 58.379 36.000 0.00 0.00 46.27 0.98
2906 4842 7.260603 ACAGAAACCGTTACTACGCTTAATAT 58.739 34.615 0.00 0.00 46.27 1.28
2907 4843 8.405531 ACAGAAACCGTTACTACGCTTAATATA 58.594 33.333 0.00 0.00 46.27 0.86
2908 4844 8.685536 CAGAAACCGTTACTACGCTTAATATAC 58.314 37.037 0.00 0.00 46.27 1.47
2909 4845 7.862873 AGAAACCGTTACTACGCTTAATATACC 59.137 37.037 0.00 0.00 46.27 2.73
2920 4856 9.355215 CTACGCTTAATATACCATAGAAACCAG 57.645 37.037 0.00 0.00 0.00 4.00
2925 4861 9.930693 CTTAATATACCATAGAAACCAGAGGAC 57.069 37.037 0.00 0.00 0.00 3.85
2945 4883 1.467035 CGCAGTACGGAACCTACTGTC 60.467 57.143 20.29 15.20 42.15 3.51
2947 4885 2.159407 GCAGTACGGAACCTACTGTCTC 60.159 54.545 20.29 9.35 42.15 3.36
2949 4887 2.079925 GTACGGAACCTACTGTCTCGT 58.920 52.381 0.00 0.00 38.47 4.18
2951 4889 1.959282 ACGGAACCTACTGTCTCGTTT 59.041 47.619 0.00 0.00 33.63 3.60
2961 4903 1.618837 CTGTCTCGTTTCTTCCTGGGA 59.381 52.381 0.00 0.00 0.00 4.37
2965 4907 4.072839 GTCTCGTTTCTTCCTGGGAAATT 58.927 43.478 3.55 0.00 35.55 1.82
2970 4912 4.320494 CGTTTCTTCCTGGGAAATTGACAG 60.320 45.833 3.55 0.00 35.55 3.51
2977 4930 3.828451 CCTGGGAAATTGACAGTGACATT 59.172 43.478 0.00 0.00 0.00 2.71
2994 4947 8.694394 CAGTGACATTGTGATCTATATTACGTG 58.306 37.037 0.00 0.00 0.00 4.49
3008 4961 8.347771 TCTATATTACGTGGACTCATGTTACAC 58.652 37.037 0.00 0.00 42.56 2.90
3015 4968 4.002982 TGGACTCATGTTACACATTGCTC 58.997 43.478 0.00 0.00 36.53 4.26
3016 4969 3.062639 GGACTCATGTTACACATTGCTCG 59.937 47.826 0.00 0.00 36.53 5.03
3017 4970 3.002791 ACTCATGTTACACATTGCTCGG 58.997 45.455 0.00 0.00 36.53 4.63
3018 4971 1.737236 TCATGTTACACATTGCTCGGC 59.263 47.619 0.00 0.00 36.53 5.54
3019 4972 1.094785 ATGTTACACATTGCTCGGCC 58.905 50.000 0.00 0.00 34.67 6.13
3020 4973 0.958382 TGTTACACATTGCTCGGCCC 60.958 55.000 0.00 0.00 0.00 5.80
3021 4974 0.676782 GTTACACATTGCTCGGCCCT 60.677 55.000 0.00 0.00 0.00 5.19
3022 4975 0.676466 TTACACATTGCTCGGCCCTG 60.676 55.000 0.00 0.00 0.00 4.45
3023 4976 1.549243 TACACATTGCTCGGCCCTGA 61.549 55.000 0.00 0.00 0.00 3.86
3024 4977 1.675310 CACATTGCTCGGCCCTGAA 60.675 57.895 0.00 0.00 0.00 3.02
3025 4978 1.675641 ACATTGCTCGGCCCTGAAC 60.676 57.895 0.00 0.00 0.00 3.18
3026 4979 1.675310 CATTGCTCGGCCCTGAACA 60.675 57.895 0.00 0.00 0.00 3.18
3027 4980 1.675641 ATTGCTCGGCCCTGAACAC 60.676 57.895 0.00 0.00 0.00 3.32
3028 4981 3.842925 TTGCTCGGCCCTGAACACC 62.843 63.158 0.00 0.00 0.00 4.16
3029 4982 4.329545 GCTCGGCCCTGAACACCA 62.330 66.667 0.00 0.00 0.00 4.17
3043 4996 1.298859 ACACCAGCGCCTTTTCGATC 61.299 55.000 2.29 0.00 0.00 3.69
3056 5009 4.378874 CCTTTTCGATCTGAAACAGCTTCC 60.379 45.833 10.79 0.00 45.98 3.46
3062 5015 1.768275 TCTGAAACAGCTTCCCACTCA 59.232 47.619 0.00 0.00 32.53 3.41
3063 5016 1.876156 CTGAAACAGCTTCCCACTCAC 59.124 52.381 0.00 0.00 32.53 3.51
3064 5017 1.490490 TGAAACAGCTTCCCACTCACT 59.510 47.619 0.00 0.00 32.53 3.41
3065 5018 2.147150 GAAACAGCTTCCCACTCACTC 58.853 52.381 0.00 0.00 0.00 3.51
3067 5020 2.310779 ACAGCTTCCCACTCACTCTA 57.689 50.000 0.00 0.00 0.00 2.43
3068 5021 1.896465 ACAGCTTCCCACTCACTCTAC 59.104 52.381 0.00 0.00 0.00 2.59
3069 5022 1.895798 CAGCTTCCCACTCACTCTACA 59.104 52.381 0.00 0.00 0.00 2.74
3070 5023 2.499289 CAGCTTCCCACTCACTCTACAT 59.501 50.000 0.00 0.00 0.00 2.29
3071 5024 2.499289 AGCTTCCCACTCACTCTACATG 59.501 50.000 0.00 0.00 0.00 3.21
3072 5025 2.419297 GCTTCCCACTCACTCTACATGG 60.419 54.545 0.00 0.00 0.00 3.66
3073 5026 2.623418 TCCCACTCACTCTACATGGT 57.377 50.000 0.00 0.00 0.00 3.55
3074 5027 2.902608 TCCCACTCACTCTACATGGTT 58.097 47.619 0.00 0.00 0.00 3.67
3075 5028 3.248024 TCCCACTCACTCTACATGGTTT 58.752 45.455 0.00 0.00 0.00 3.27
3076 5029 3.007940 TCCCACTCACTCTACATGGTTTG 59.992 47.826 0.00 0.00 0.00 2.93
3082 5035 7.148407 CCACTCACTCTACATGGTTTGTATTTC 60.148 40.741 0.00 0.00 40.02 2.17
3098 5051 3.947910 ATTTCTGAAACATGTGCAGGG 57.052 42.857 21.90 5.79 0.00 4.45
3100 5053 0.178995 TCTGAAACATGTGCAGGGCA 60.179 50.000 21.90 6.85 35.60 5.36
3110 5063 1.905894 TGTGCAGGGCATACAGTAGAA 59.094 47.619 0.00 0.00 41.91 2.10
3118 5071 2.603560 GGCATACAGTAGAAACGAGCAC 59.396 50.000 0.00 0.00 0.00 4.40
3200 5269 1.228124 CCCGCCTGAACCAACAGAA 60.228 57.895 0.00 0.00 39.94 3.02
3210 5279 5.309323 TGAACCAACAGAACAAGAACAAG 57.691 39.130 0.00 0.00 0.00 3.16
3225 5294 5.248380 AGAACAAGGCCTCTCAACTAAAT 57.752 39.130 5.23 0.00 0.00 1.40
3236 5305 6.016276 GCCTCTCAACTAAATTTCTCAAACCA 60.016 38.462 0.00 0.00 0.00 3.67
3240 5309 5.538433 TCAACTAAATTTCTCAAACCAGGGG 59.462 40.000 0.00 0.00 0.00 4.79
3241 5310 3.832490 ACTAAATTTCTCAAACCAGGGGC 59.168 43.478 0.00 0.00 0.00 5.80
3242 5311 2.397044 AATTTCTCAAACCAGGGGCA 57.603 45.000 0.00 0.00 0.00 5.36
3337 5416 1.811359 AGCGACTAGTATCCCGTATGC 59.189 52.381 0.00 0.00 0.00 3.14
3381 5462 2.143876 AGTTACATGTTGGGATGGGC 57.856 50.000 2.30 0.00 0.00 5.36
3383 5464 1.750778 GTTACATGTTGGGATGGGCAG 59.249 52.381 2.30 0.00 0.00 4.85
3384 5465 0.258484 TACATGTTGGGATGGGCAGG 59.742 55.000 2.30 0.00 0.00 4.85
3419 5504 4.168291 CAGCTTCCTCGAGGGGCC 62.168 72.222 31.66 21.02 35.88 5.80
3446 5531 0.670546 TCTGTTGAACAGCCGCTAGC 60.671 55.000 19.99 4.06 45.54 3.42
3467 5552 1.405661 GGGTTCATCTGGACGGAGAAC 60.406 57.143 11.62 11.62 38.22 3.01
3482 5567 4.269523 AACGCAAGCTGGAGGGCA 62.270 61.111 0.00 0.00 45.62 5.36
3535 5621 3.050275 GAACACCGCCCTGTCAGC 61.050 66.667 0.00 0.00 0.00 4.26
3543 5629 2.467826 GCCCTGTCAGCGCAGATTC 61.468 63.158 11.47 0.00 38.70 2.52
3544 5630 1.078918 CCCTGTCAGCGCAGATTCA 60.079 57.895 11.47 0.95 38.70 2.57
3554 5640 5.453587 GTCAGCGCAGATTCATATGAAAAAC 59.546 40.000 21.50 15.08 37.61 2.43
3555 5641 5.123661 TCAGCGCAGATTCATATGAAAAACA 59.876 36.000 21.50 0.00 37.61 2.83
3556 5642 5.975344 CAGCGCAGATTCATATGAAAAACAT 59.025 36.000 21.50 5.24 42.39 2.71
3558 5644 6.694411 AGCGCAGATTCATATGAAAAACATTC 59.306 34.615 21.50 13.17 40.07 2.67
3559 5645 6.473131 GCGCAGATTCATATGAAAAACATTCA 59.527 34.615 21.50 0.00 40.07 2.57
3561 5647 8.316046 CGCAGATTCATATGAAAAACATTCAAC 58.684 33.333 21.50 8.79 40.07 3.18
3562 5648 9.362539 GCAGATTCATATGAAAAACATTCAACT 57.637 29.630 21.50 1.00 40.07 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.129871 GAGGCATTGTCTAGAGCATGTC 58.870 50.000 7.37 7.37 0.00 3.06
24 27 2.089980 CTTCACTCCTTGGAGGCATTG 58.910 52.381 19.51 9.54 34.61 2.82
30 33 3.736433 CGTAGCATCTTCACTCCTTGGAG 60.736 52.174 14.58 14.58 30.79 3.86
39 42 0.108138 AGGCACCGTAGCATCTTCAC 60.108 55.000 0.00 0.00 35.83 3.18
61 64 2.901042 CTTGTCCTACCGGGGAGC 59.099 66.667 6.32 0.00 35.87 4.70
64 67 4.157120 CGGCTTGTCCTACCGGGG 62.157 72.222 6.32 0.00 43.23 5.73
74 77 1.406860 AAAACCATTGGCCGGCTTGT 61.407 50.000 28.56 13.37 0.00 3.16
103 106 2.558359 GGTTGTCATCCTTCACCTTTGG 59.442 50.000 0.00 0.00 0.00 3.28
112 115 1.774254 TCACTGTGGGTTGTCATCCTT 59.226 47.619 8.11 0.00 0.00 3.36
124 127 1.372683 CCTGGAGGTGTCACTGTGG 59.627 63.158 8.11 0.00 0.00 4.17
151 154 3.387374 CCTATGATGCTCTTGAGTGTCCT 59.613 47.826 0.00 0.00 0.00 3.85
153 156 3.129871 GCCTATGATGCTCTTGAGTGTC 58.870 50.000 0.00 0.00 0.00 3.67
154 157 2.502947 TGCCTATGATGCTCTTGAGTGT 59.497 45.455 0.00 0.00 0.00 3.55
155 158 2.871022 GTGCCTATGATGCTCTTGAGTG 59.129 50.000 0.00 0.00 0.00 3.51
156 159 2.158842 GGTGCCTATGATGCTCTTGAGT 60.159 50.000 0.00 0.00 0.00 3.41
166 169 2.170397 TGACGATGTTGGTGCCTATGAT 59.830 45.455 0.00 0.00 0.00 2.45
184 187 2.815478 CCGATTCTAACTCAGCCTGAC 58.185 52.381 0.00 0.00 0.00 3.51
187 190 0.466124 GGCCGATTCTAACTCAGCCT 59.534 55.000 0.00 0.00 36.00 4.58
189 192 1.134670 AGTGGCCGATTCTAACTCAGC 60.135 52.381 0.00 0.00 0.00 4.26
204 215 0.237498 GACTTTGTGCGGTTAGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
209 220 0.881159 CGGTGGACTTTGTGCGGTTA 60.881 55.000 0.00 0.00 0.00 2.85
211 222 2.590575 CGGTGGACTTTGTGCGGT 60.591 61.111 0.00 0.00 0.00 5.68
213 224 2.590575 ACCGGTGGACTTTGTGCG 60.591 61.111 6.12 0.00 0.00 5.34
214 225 1.525077 TGACCGGTGGACTTTGTGC 60.525 57.895 14.63 0.00 0.00 4.57
230 241 3.898482 TGTAATCTCGATCAGAGGGTGA 58.102 45.455 12.54 0.00 46.82 4.02
238 249 5.438761 ACGATGACATGTAATCTCGATCA 57.561 39.130 19.15 1.40 0.00 2.92
254 274 6.311935 CACTCGGAAAAAGGTAATTACGATGA 59.688 38.462 9.46 0.00 0.00 2.92
288 308 3.882888 TCTTTGTTGGCCTAGTGAAGTTG 59.117 43.478 3.32 0.00 0.00 3.16
297 317 6.662865 TGATTCAATTTCTTTGTTGGCCTA 57.337 33.333 3.32 0.00 36.65 3.93
299 319 6.348704 CCAATGATTCAATTTCTTTGTTGGCC 60.349 38.462 0.00 0.00 32.77 5.36
306 326 6.297582 TGCAACCCAATGATTCAATTTCTTT 58.702 32.000 0.00 0.00 0.00 2.52
320 340 5.507817 CGCACAAATATAGATGCAACCCAAT 60.508 40.000 0.00 0.00 37.97 3.16
352 372 9.512588 ACTGTATAGTAAGTTATGCGTAGGTAT 57.487 33.333 0.00 0.00 34.74 2.73
353 373 8.908786 ACTGTATAGTAAGTTATGCGTAGGTA 57.091 34.615 0.00 0.00 34.74 3.08
354 374 7.718753 AGACTGTATAGTAAGTTATGCGTAGGT 59.281 37.037 0.00 0.00 37.25 3.08
355 375 8.097078 AGACTGTATAGTAAGTTATGCGTAGG 57.903 38.462 0.00 0.00 37.25 3.18
358 378 6.696148 GCAAGACTGTATAGTAAGTTATGCGT 59.304 38.462 0.00 0.00 37.25 5.24
359 379 6.918569 AGCAAGACTGTATAGTAAGTTATGCG 59.081 38.462 0.00 0.00 40.40 4.73
360 380 9.745880 TTAGCAAGACTGTATAGTAAGTTATGC 57.254 33.333 0.00 0.00 37.25 3.14
364 384 9.245481 AGACTTAGCAAGACTGTATAGTAAGTT 57.755 33.333 5.14 0.00 37.25 2.66
365 385 8.810990 AGACTTAGCAAGACTGTATAGTAAGT 57.189 34.615 3.66 3.66 37.25 2.24
366 386 8.894731 TGAGACTTAGCAAGACTGTATAGTAAG 58.105 37.037 0.00 0.00 37.25 2.34
367 387 8.803397 TGAGACTTAGCAAGACTGTATAGTAA 57.197 34.615 0.00 0.00 37.25 2.24
370 390 7.328277 ACTGAGACTTAGCAAGACTGTATAG 57.672 40.000 5.85 0.00 33.75 1.31
371 391 6.037281 CGACTGAGACTTAGCAAGACTGTATA 59.963 42.308 5.85 0.00 33.75 1.47
373 393 4.154375 CGACTGAGACTTAGCAAGACTGTA 59.846 45.833 5.85 0.00 33.75 2.74
374 394 3.057876 CGACTGAGACTTAGCAAGACTGT 60.058 47.826 5.85 0.00 33.75 3.55
375 395 3.189495 TCGACTGAGACTTAGCAAGACTG 59.811 47.826 5.85 0.00 33.75 3.51
376 396 3.189702 GTCGACTGAGACTTAGCAAGACT 59.810 47.826 8.70 2.60 38.09 3.24
377 397 3.494232 GTCGACTGAGACTTAGCAAGAC 58.506 50.000 8.70 0.00 38.09 3.01
378 398 3.833545 GTCGACTGAGACTTAGCAAGA 57.166 47.619 8.70 0.00 38.09 3.02
391 411 0.519519 AGCGAAGTCTCAGTCGACTG 59.480 55.000 34.76 34.76 43.14 3.51
392 412 2.096220 TAGCGAAGTCTCAGTCGACT 57.904 50.000 13.58 13.58 45.73 4.18
393 413 2.896243 TTAGCGAAGTCTCAGTCGAC 57.104 50.000 7.70 7.70 39.64 4.20
394 414 3.690139 AGATTTAGCGAAGTCTCAGTCGA 59.310 43.478 0.00 0.00 39.64 4.20
395 415 4.022464 AGATTTAGCGAAGTCTCAGTCG 57.978 45.455 0.00 0.00 40.24 4.18
400 420 4.032355 CGACTGAGATTTAGCGAAGTCTC 58.968 47.826 20.38 20.38 44.64 3.36
401 421 3.690139 TCGACTGAGATTTAGCGAAGTCT 59.310 43.478 4.27 4.27 34.54 3.24
402 422 4.017380 TCGACTGAGATTTAGCGAAGTC 57.983 45.455 0.00 0.00 0.00 3.01
403 423 4.142359 ACATCGACTGAGATTTAGCGAAGT 60.142 41.667 0.00 0.00 31.38 3.01
404 424 4.355437 ACATCGACTGAGATTTAGCGAAG 58.645 43.478 0.00 0.00 31.38 3.79
405 425 4.371855 ACATCGACTGAGATTTAGCGAA 57.628 40.909 0.00 0.00 31.38 4.70
406 426 4.371855 AACATCGACTGAGATTTAGCGA 57.628 40.909 0.00 0.00 0.00 4.93
407 427 7.219154 GGATATAACATCGACTGAGATTTAGCG 59.781 40.741 0.00 0.00 0.00 4.26
408 428 8.029522 TGGATATAACATCGACTGAGATTTAGC 58.970 37.037 0.00 0.00 0.00 3.09
413 433 9.467796 TCTTATGGATATAACATCGACTGAGAT 57.532 33.333 0.00 0.00 0.00 2.75
414 434 8.863872 TCTTATGGATATAACATCGACTGAGA 57.136 34.615 0.00 0.00 0.00 3.27
481 501 9.944663 GTCAAGTGACATAACATACAAAAGAAA 57.055 29.630 6.57 0.00 44.18 2.52
482 502 8.564574 GGTCAAGTGACATAACATACAAAAGAA 58.435 33.333 13.21 0.00 46.47 2.52
483 503 7.717436 TGGTCAAGTGACATAACATACAAAAGA 59.283 33.333 13.21 0.00 46.47 2.52
484 504 7.870826 TGGTCAAGTGACATAACATACAAAAG 58.129 34.615 13.21 0.00 46.47 2.27
485 505 7.809546 TGGTCAAGTGACATAACATACAAAA 57.190 32.000 13.21 0.00 46.47 2.44
486 506 7.717436 TCTTGGTCAAGTGACATAACATACAAA 59.283 33.333 13.21 0.00 46.47 2.83
487 507 7.172532 GTCTTGGTCAAGTGACATAACATACAA 59.827 37.037 13.21 4.96 46.47 2.41
488 508 6.649141 GTCTTGGTCAAGTGACATAACATACA 59.351 38.462 13.21 0.00 46.47 2.29
489 509 6.874134 AGTCTTGGTCAAGTGACATAACATAC 59.126 38.462 13.21 4.36 46.47 2.39
490 510 7.004555 AGTCTTGGTCAAGTGACATAACATA 57.995 36.000 13.21 0.00 46.47 2.29
491 511 5.869579 AGTCTTGGTCAAGTGACATAACAT 58.130 37.500 13.21 0.00 46.47 2.71
492 512 5.290493 AGTCTTGGTCAAGTGACATAACA 57.710 39.130 13.21 0.00 46.47 2.41
493 513 5.049405 CCAAGTCTTGGTCAAGTGACATAAC 60.049 44.000 21.76 5.79 46.47 1.89
494 514 5.063204 CCAAGTCTTGGTCAAGTGACATAA 58.937 41.667 21.76 6.92 46.47 1.90
495 515 4.641396 CCAAGTCTTGGTCAAGTGACATA 58.359 43.478 21.76 0.00 46.47 2.29
496 516 3.480470 CCAAGTCTTGGTCAAGTGACAT 58.520 45.455 21.76 0.00 46.47 3.06
497 517 2.917933 CCAAGTCTTGGTCAAGTGACA 58.082 47.619 21.76 0.00 46.47 3.58
508 528 5.841810 TGGCTGAAATTTAACCAAGTCTTG 58.158 37.500 5.53 5.53 0.00 3.02
509 529 6.478512 TTGGCTGAAATTTAACCAAGTCTT 57.521 33.333 12.63 0.00 35.53 3.01
510 530 6.670695 ATTGGCTGAAATTTAACCAAGTCT 57.329 33.333 18.52 5.61 43.22 3.24
511 531 6.928492 TCAATTGGCTGAAATTTAACCAAGTC 59.072 34.615 18.52 4.43 43.22 3.01
512 532 6.825610 TCAATTGGCTGAAATTTAACCAAGT 58.174 32.000 18.52 15.12 43.22 3.16
513 533 7.116805 GTCTCAATTGGCTGAAATTTAACCAAG 59.883 37.037 18.52 10.20 43.22 3.61
514 534 6.928492 GTCTCAATTGGCTGAAATTTAACCAA 59.072 34.615 16.88 16.88 44.04 3.67
515 535 6.454795 GTCTCAATTGGCTGAAATTTAACCA 58.545 36.000 5.42 0.00 0.00 3.67
516 536 5.869344 GGTCTCAATTGGCTGAAATTTAACC 59.131 40.000 5.42 0.00 0.00 2.85
517 537 6.691508 AGGTCTCAATTGGCTGAAATTTAAC 58.308 36.000 5.42 0.00 0.00 2.01
518 538 6.916360 AGGTCTCAATTGGCTGAAATTTAA 57.084 33.333 5.42 0.00 0.00 1.52
519 539 7.285401 GGATAGGTCTCAATTGGCTGAAATTTA 59.715 37.037 5.42 0.00 0.00 1.40
520 540 6.097412 GGATAGGTCTCAATTGGCTGAAATTT 59.903 38.462 5.42 0.00 0.00 1.82
521 541 5.595952 GGATAGGTCTCAATTGGCTGAAATT 59.404 40.000 5.42 0.00 0.00 1.82
522 542 5.136105 GGATAGGTCTCAATTGGCTGAAAT 58.864 41.667 5.42 0.00 0.00 2.17
523 543 4.018506 TGGATAGGTCTCAATTGGCTGAAA 60.019 41.667 5.42 0.00 0.00 2.69
524 544 3.523157 TGGATAGGTCTCAATTGGCTGAA 59.477 43.478 5.42 0.00 0.00 3.02
525 545 3.114606 TGGATAGGTCTCAATTGGCTGA 58.885 45.455 5.42 0.00 0.00 4.26
526 546 3.565764 TGGATAGGTCTCAATTGGCTG 57.434 47.619 5.42 0.00 0.00 4.85
527 547 4.042187 GGTATGGATAGGTCTCAATTGGCT 59.958 45.833 5.42 0.00 0.00 4.75
528 548 4.327680 GGTATGGATAGGTCTCAATTGGC 58.672 47.826 5.42 0.00 0.00 4.52
529 549 4.263506 GGGGTATGGATAGGTCTCAATTGG 60.264 50.000 5.42 0.00 0.00 3.16
530 550 4.599241 AGGGGTATGGATAGGTCTCAATTG 59.401 45.833 0.00 0.00 0.00 2.32
531 551 4.844348 AGGGGTATGGATAGGTCTCAATT 58.156 43.478 0.00 0.00 0.00 2.32
532 552 4.510303 AGGGGTATGGATAGGTCTCAAT 57.490 45.455 0.00 0.00 0.00 2.57
533 553 4.295905 AAGGGGTATGGATAGGTCTCAA 57.704 45.455 0.00 0.00 0.00 3.02
534 554 4.422592 AGTAAGGGGTATGGATAGGTCTCA 59.577 45.833 0.00 0.00 0.00 3.27
535 555 5.013258 AGTAAGGGGTATGGATAGGTCTC 57.987 47.826 0.00 0.00 0.00 3.36
536 556 6.556644 TTAGTAAGGGGTATGGATAGGTCT 57.443 41.667 0.00 0.00 0.00 3.85
537 557 7.809880 ATTTAGTAAGGGGTATGGATAGGTC 57.190 40.000 0.00 0.00 0.00 3.85
538 558 8.023271 AGAATTTAGTAAGGGGTATGGATAGGT 58.977 37.037 0.00 0.00 0.00 3.08
539 559 8.450780 AGAATTTAGTAAGGGGTATGGATAGG 57.549 38.462 0.00 0.00 0.00 2.57
542 562 8.373220 CGTAAGAATTTAGTAAGGGGTATGGAT 58.627 37.037 0.00 0.00 43.02 3.41
543 563 7.345392 ACGTAAGAATTTAGTAAGGGGTATGGA 59.655 37.037 0.00 0.00 43.62 3.41
544 564 7.503549 ACGTAAGAATTTAGTAAGGGGTATGG 58.496 38.462 0.00 0.00 43.62 2.74
547 567 9.030452 TGTTACGTAAGAATTTAGTAAGGGGTA 57.970 33.333 8.60 0.00 43.62 3.69
548 568 7.906327 TGTTACGTAAGAATTTAGTAAGGGGT 58.094 34.615 8.60 0.00 43.62 4.95
549 569 8.953368 ATGTTACGTAAGAATTTAGTAAGGGG 57.047 34.615 8.60 0.00 43.62 4.79
568 588 8.994170 GCTGGAAAGAGATTATAGGAATGTTAC 58.006 37.037 0.00 0.00 0.00 2.50
569 589 8.157476 GGCTGGAAAGAGATTATAGGAATGTTA 58.843 37.037 0.00 0.00 0.00 2.41
570 590 7.001073 GGCTGGAAAGAGATTATAGGAATGTT 58.999 38.462 0.00 0.00 0.00 2.71
581 601 1.673767 TCAGGGGCTGGAAAGAGATT 58.326 50.000 0.00 0.00 31.51 2.40
582 602 1.904440 ATCAGGGGCTGGAAAGAGAT 58.096 50.000 0.00 0.00 31.51 2.75
583 603 1.673767 AATCAGGGGCTGGAAAGAGA 58.326 50.000 0.00 0.00 31.51 3.10
584 604 2.291153 TGAAATCAGGGGCTGGAAAGAG 60.291 50.000 0.00 0.00 31.51 2.85
588 943 1.428912 AGTTGAAATCAGGGGCTGGAA 59.571 47.619 0.00 0.00 31.51 3.53
593 948 0.890683 CCACAGTTGAAATCAGGGGC 59.109 55.000 0.00 0.00 0.00 5.80
599 954 1.257750 GGGGGCCCACAGTTGAAATC 61.258 60.000 26.86 0.00 35.81 2.17
615 970 1.981495 GATGTAATCAGGGAGAGGGGG 59.019 57.143 0.00 0.00 44.70 5.40
631 986 3.706086 GGTGGGCTATTTTGATTGGATGT 59.294 43.478 0.00 0.00 0.00 3.06
650 1005 7.624360 TTAACAATACCTAAAGCATCAGGTG 57.376 36.000 12.07 0.76 44.93 4.00
655 1010 8.009974 CGTGCTATTAACAATACCTAAAGCATC 58.990 37.037 0.00 0.00 0.00 3.91
660 1015 7.465989 GCAACGTGCTATTAACAATACCTAAA 58.534 34.615 0.00 0.00 40.96 1.85
664 1019 4.201744 ACGCAACGTGCTATTAACAATACC 60.202 41.667 8.07 0.00 42.25 2.73
668 1023 3.002451 ACAACGCAACGTGCTATTAACAA 59.998 39.130 8.07 0.00 42.25 2.83
669 1024 2.544686 ACAACGCAACGTGCTATTAACA 59.455 40.909 8.07 0.00 42.25 2.41
670 1025 3.150731 GACAACGCAACGTGCTATTAAC 58.849 45.455 8.07 0.00 42.25 2.01
671 1026 2.801111 TGACAACGCAACGTGCTATTAA 59.199 40.909 8.07 0.00 42.25 1.40
674 1029 0.511221 GTGACAACGCAACGTGCTAT 59.489 50.000 8.07 0.00 42.25 2.97
755 1126 1.816074 GTCTGTTGTTTCGGGCCATA 58.184 50.000 4.39 0.00 0.00 2.74
917 1288 2.819154 TGATCGGCCGACGTACGA 60.819 61.111 33.75 6.41 45.77 3.43
934 1305 0.252197 GGCTGGTTAGTTGATCGGGT 59.748 55.000 0.00 0.00 0.00 5.28
976 1347 0.465097 GGAGATGGGGAGACGTACGA 60.465 60.000 24.41 0.00 0.00 3.43
984 1360 1.312815 GCATTTTCGGAGATGGGGAG 58.687 55.000 0.00 0.00 35.04 4.30
1059 1435 0.035739 TACCTTGGACTTGCGGTTCC 59.964 55.000 0.00 0.00 0.00 3.62
1086 1462 4.505217 GAACGTGAGCGGCGCATG 62.505 66.667 35.02 21.85 43.45 4.06
1087 1463 4.742201 AGAACGTGAGCGGCGCAT 62.742 61.111 35.02 19.11 43.45 4.73
1096 1472 4.733815 GCAATCTAAGATCCGAGAACGTGA 60.734 45.833 0.00 0.00 37.88 4.35
1154 1530 3.102107 ACTCTCTAGAGCGTGCGCG 62.102 63.158 16.86 16.86 45.79 6.86
1170 1546 4.827284 ACGAAGGAATTCCAAAATGTCACT 59.173 37.500 26.22 0.00 38.89 3.41
1171 1547 4.917415 CACGAAGGAATTCCAAAATGTCAC 59.083 41.667 26.22 5.72 38.89 3.67
1172 1548 4.582656 ACACGAAGGAATTCCAAAATGTCA 59.417 37.500 26.22 0.00 38.89 3.58
1173 1549 5.121221 ACACGAAGGAATTCCAAAATGTC 57.879 39.130 26.22 11.57 38.89 3.06
1175 1551 6.403636 CCTCTACACGAAGGAATTCCAAAATG 60.404 42.308 26.22 19.22 38.89 2.32
1183 1560 2.168728 GGCTCCTCTACACGAAGGAATT 59.831 50.000 0.00 0.00 0.00 2.17
1244 1621 2.574399 GGCTCCGAGCTCGTCTTT 59.426 61.111 32.41 0.00 41.99 2.52
1379 1756 2.550101 GCCCTCGCCAATGATCTGC 61.550 63.158 0.00 0.00 0.00 4.26
1425 1802 2.672996 GACCACCACAGCGCCAAT 60.673 61.111 2.29 0.00 0.00 3.16
1512 1893 9.209175 GAGTGAATTGGTGATAGTGGATTATAC 57.791 37.037 0.00 0.00 0.00 1.47
1516 1897 6.319048 AGAGTGAATTGGTGATAGTGGATT 57.681 37.500 0.00 0.00 0.00 3.01
1547 1928 6.700352 CCATGGTGAATTGGTGATAGTTTTT 58.300 36.000 2.57 0.00 0.00 1.94
1548 1929 5.337491 GCCATGGTGAATTGGTGATAGTTTT 60.337 40.000 14.67 0.00 35.34 2.43
1552 1933 3.067180 GTGCCATGGTGAATTGGTGATAG 59.933 47.826 14.67 0.00 35.34 2.08
1553 1934 3.023119 GTGCCATGGTGAATTGGTGATA 58.977 45.455 14.67 0.00 35.34 2.15
1555 1936 1.255882 GTGCCATGGTGAATTGGTGA 58.744 50.000 14.67 0.00 35.34 4.02
1558 1939 2.234168 TCAATGTGCCATGGTGAATTGG 59.766 45.455 23.57 12.69 36.03 3.16
1560 1941 4.468510 AGATTCAATGTGCCATGGTGAATT 59.531 37.500 21.88 13.15 38.65 2.17
1564 1945 3.880047 AAGATTCAATGTGCCATGGTG 57.120 42.857 14.67 2.98 0.00 4.17
1565 1946 4.142403 CGTAAAGATTCAATGTGCCATGGT 60.142 41.667 14.67 0.00 0.00 3.55
1566 1947 4.096231 TCGTAAAGATTCAATGTGCCATGG 59.904 41.667 7.63 7.63 0.00 3.66
1567 1948 5.233957 TCGTAAAGATTCAATGTGCCATG 57.766 39.130 0.00 0.00 0.00 3.66
1568 1949 5.895636 TTCGTAAAGATTCAATGTGCCAT 57.104 34.783 0.00 0.00 0.00 4.40
1569 1950 5.457140 GTTTCGTAAAGATTCAATGTGCCA 58.543 37.500 0.00 0.00 0.00 4.92
1570 1951 4.857037 GGTTTCGTAAAGATTCAATGTGCC 59.143 41.667 0.00 0.00 0.00 5.01
1615 2002 6.275335 TCACTTTCTTCCAAGCAGATTTTTG 58.725 36.000 0.00 0.00 0.00 2.44
1616 2003 6.097412 ACTCACTTTCTTCCAAGCAGATTTTT 59.903 34.615 0.00 0.00 0.00 1.94
1617 2004 5.595952 ACTCACTTTCTTCCAAGCAGATTTT 59.404 36.000 0.00 0.00 0.00 1.82
1618 2005 5.136105 ACTCACTTTCTTCCAAGCAGATTT 58.864 37.500 0.00 0.00 0.00 2.17
1619 2006 4.723309 ACTCACTTTCTTCCAAGCAGATT 58.277 39.130 0.00 0.00 0.00 2.40
1620 2007 4.363991 ACTCACTTTCTTCCAAGCAGAT 57.636 40.909 0.00 0.00 0.00 2.90
1621 2008 3.845781 ACTCACTTTCTTCCAAGCAGA 57.154 42.857 0.00 0.00 0.00 4.26
1628 2015 3.203716 ACACGGAAACTCACTTTCTTCC 58.796 45.455 0.00 0.00 38.72 3.46
1634 2021 6.092955 TGTATCTTACACGGAAACTCACTT 57.907 37.500 0.00 0.00 32.89 3.16
1644 2031 6.753107 AAAATCCCTTTGTATCTTACACGG 57.247 37.500 0.00 0.00 38.63 4.94
1660 2055 5.805728 TCTCTGAACCTGACTAAAAATCCC 58.194 41.667 0.00 0.00 0.00 3.85
1679 2083 2.027469 TCTGCATGCACACAAGATCTCT 60.027 45.455 18.46 0.00 0.00 3.10
1860 3636 3.270877 GCAGTATGTAAGAAGTGGGTGG 58.729 50.000 0.00 0.00 39.31 4.61
1861 3637 3.937814 TGCAGTATGTAAGAAGTGGGTG 58.062 45.455 0.00 0.00 39.31 4.61
1890 3666 4.024302 CCGATGATGGTGATGAAACAGATG 60.024 45.833 0.00 0.00 0.00 2.90
1906 3682 1.228063 GCCTGGTGCATCCGATGAT 60.228 57.895 12.79 0.00 40.77 2.45
1939 3789 2.602676 CCTCACCCGGGTTGTCCAT 61.603 63.158 27.83 0.00 34.36 3.41
1945 3795 3.782443 GCGATCCTCACCCGGGTT 61.782 66.667 27.83 9.58 0.00 4.11
2032 3882 0.905357 CGAGGAGGATGTTGGAGGTT 59.095 55.000 0.00 0.00 0.00 3.50
2077 3927 3.249189 TTGGCCAGCCCGAAGTCT 61.249 61.111 5.11 0.00 35.87 3.24
2326 4176 1.205655 TCCACGATCTTCTCCAGCTTG 59.794 52.381 0.00 0.00 0.00 4.01
2622 4484 2.434336 ACACACACACACACAGACCTAT 59.566 45.455 0.00 0.00 0.00 2.57
2623 4485 1.828595 ACACACACACACACAGACCTA 59.171 47.619 0.00 0.00 0.00 3.08
2624 4486 0.613260 ACACACACACACACAGACCT 59.387 50.000 0.00 0.00 0.00 3.85
2626 4488 4.875544 ATTTACACACACACACACAGAC 57.124 40.909 0.00 0.00 0.00 3.51
2627 4489 5.888691 AAATTTACACACACACACACAGA 57.111 34.783 0.00 0.00 0.00 3.41
2628 4490 8.530720 CATTTAAATTTACACACACACACACAG 58.469 33.333 0.00 0.00 0.00 3.66
2639 4501 7.441890 TTCTCTCCGCATTTAAATTTACACA 57.558 32.000 0.00 0.00 0.00 3.72
2655 4517 2.432628 AACCGCGCTTTCTCTCCG 60.433 61.111 5.56 0.00 0.00 4.63
2698 4561 7.489435 TCACGAGCACATTTTATTTTTGAACAA 59.511 29.630 0.00 0.00 0.00 2.83
2707 4570 6.292865 CGTATCCATCACGAGCACATTTTATT 60.293 38.462 0.00 0.00 41.91 1.40
2709 4572 4.506288 CGTATCCATCACGAGCACATTTTA 59.494 41.667 0.00 0.00 41.91 1.52
2712 4575 2.473816 CGTATCCATCACGAGCACATT 58.526 47.619 0.00 0.00 41.91 2.71
2713 4576 1.269778 CCGTATCCATCACGAGCACAT 60.270 52.381 0.00 0.00 41.91 3.21
2714 4577 0.102300 CCGTATCCATCACGAGCACA 59.898 55.000 0.00 0.00 41.91 4.57
2717 4580 0.387929 TTCCCGTATCCATCACGAGC 59.612 55.000 0.00 0.00 41.91 5.03
2718 4581 2.882927 TTTCCCGTATCCATCACGAG 57.117 50.000 0.00 0.00 41.91 4.18
2719 4582 3.613494 TTTTTCCCGTATCCATCACGA 57.387 42.857 0.00 0.00 41.91 4.35
2792 4688 1.454479 AGCAGCCACACAGTGCTTT 60.454 52.632 0.00 0.00 45.31 3.51
2795 4691 3.667282 CCAGCAGCCACACAGTGC 61.667 66.667 0.00 0.00 37.48 4.40
2798 4694 1.303888 AATCCCAGCAGCCACACAG 60.304 57.895 0.00 0.00 0.00 3.66
2846 4782 5.705905 GGCTGTAGTTTAGTGGTGAGAATTT 59.294 40.000 0.00 0.00 0.00 1.82
2877 4813 3.841643 CGTAGTAACGGTTTCTGTCCAT 58.158 45.455 9.90 0.00 45.50 3.41
2893 4829 8.863086 TGGTTTCTATGGTATATTAAGCGTAGT 58.137 33.333 4.60 0.00 37.60 2.73
2895 4831 9.081204 TCTGGTTTCTATGGTATATTAAGCGTA 57.919 33.333 0.00 0.00 0.00 4.42
2897 4833 7.545965 CCTCTGGTTTCTATGGTATATTAAGCG 59.454 40.741 0.00 0.00 0.00 4.68
2898 4834 8.594550 TCCTCTGGTTTCTATGGTATATTAAGC 58.405 37.037 0.00 0.00 0.00 3.09
2901 4837 7.309621 GCGTCCTCTGGTTTCTATGGTATATTA 60.310 40.741 0.00 0.00 0.00 0.98
2902 4838 6.518537 GCGTCCTCTGGTTTCTATGGTATATT 60.519 42.308 0.00 0.00 0.00 1.28
2904 4840 4.280174 GCGTCCTCTGGTTTCTATGGTATA 59.720 45.833 0.00 0.00 0.00 1.47
2905 4841 3.069729 GCGTCCTCTGGTTTCTATGGTAT 59.930 47.826 0.00 0.00 0.00 2.73
2906 4842 2.429610 GCGTCCTCTGGTTTCTATGGTA 59.570 50.000 0.00 0.00 0.00 3.25
2907 4843 1.207329 GCGTCCTCTGGTTTCTATGGT 59.793 52.381 0.00 0.00 0.00 3.55
2908 4844 1.207089 TGCGTCCTCTGGTTTCTATGG 59.793 52.381 0.00 0.00 0.00 2.74
2909 4845 2.093973 ACTGCGTCCTCTGGTTTCTATG 60.094 50.000 0.00 0.00 0.00 2.23
2917 4853 1.592400 TTCCGTACTGCGTCCTCTGG 61.592 60.000 0.00 0.00 39.32 3.86
2920 4856 1.153881 GGTTCCGTACTGCGTCCTC 60.154 63.158 0.00 0.00 39.32 3.71
2925 4861 3.324170 CAGTAGGTTCCGTACTGCG 57.676 57.895 10.15 0.00 42.83 5.18
2931 4867 1.613836 AACGAGACAGTAGGTTCCGT 58.386 50.000 0.00 0.00 38.73 4.69
2933 4869 3.938289 AGAAACGAGACAGTAGGTTCC 57.062 47.619 0.00 0.00 0.00 3.62
2934 4870 4.022155 AGGAAGAAACGAGACAGTAGGTTC 60.022 45.833 0.00 0.00 0.00 3.62
2936 4872 3.256136 CAGGAAGAAACGAGACAGTAGGT 59.744 47.826 0.00 0.00 0.00 3.08
2940 4878 1.344763 CCCAGGAAGAAACGAGACAGT 59.655 52.381 0.00 0.00 0.00 3.55
2942 4880 1.712056 TCCCAGGAAGAAACGAGACA 58.288 50.000 0.00 0.00 0.00 3.41
2945 4883 4.072131 TCAATTTCCCAGGAAGAAACGAG 58.928 43.478 0.00 0.00 36.13 4.18
2947 4885 3.568007 TGTCAATTTCCCAGGAAGAAACG 59.432 43.478 0.00 0.00 36.13 3.60
2949 4887 4.584325 CACTGTCAATTTCCCAGGAAGAAA 59.416 41.667 0.00 0.00 37.61 2.52
2951 4889 3.394274 TCACTGTCAATTTCCCAGGAAGA 59.606 43.478 0.00 0.00 35.38 2.87
2961 4903 6.889301 AGATCACAATGTCACTGTCAATTT 57.111 33.333 0.00 0.00 0.00 1.82
2965 4907 9.750125 GTAATATAGATCACAATGTCACTGTCA 57.250 33.333 0.00 0.00 0.00 3.58
2970 4912 7.865889 TCCACGTAATATAGATCACAATGTCAC 59.134 37.037 0.00 0.00 0.00 3.67
2977 4930 7.230712 ACATGAGTCCACGTAATATAGATCACA 59.769 37.037 0.00 0.00 0.00 3.58
3008 4961 1.675310 TGTTCAGGGCCGAGCAATG 60.675 57.895 11.18 0.00 0.00 2.82
3019 4972 1.455383 AAAAGGCGCTGGTGTTCAGG 61.455 55.000 7.64 0.00 43.54 3.86
3020 4973 0.040067 GAAAAGGCGCTGGTGTTCAG 60.040 55.000 7.64 0.00 46.03 3.02
3021 4974 1.781025 CGAAAAGGCGCTGGTGTTCA 61.781 55.000 7.64 0.00 0.00 3.18
3022 4975 1.082104 CGAAAAGGCGCTGGTGTTC 60.082 57.895 7.64 2.54 0.00 3.18
3023 4976 0.889186 ATCGAAAAGGCGCTGGTGTT 60.889 50.000 7.64 0.00 0.00 3.32
3024 4977 1.298859 GATCGAAAAGGCGCTGGTGT 61.299 55.000 7.64 0.00 0.00 4.16
3025 4978 1.021390 AGATCGAAAAGGCGCTGGTG 61.021 55.000 7.64 0.00 0.00 4.17
3026 4979 1.021390 CAGATCGAAAAGGCGCTGGT 61.021 55.000 7.64 0.00 0.00 4.00
3027 4980 0.740868 TCAGATCGAAAAGGCGCTGG 60.741 55.000 7.64 0.00 0.00 4.85
3028 4981 1.078709 TTCAGATCGAAAAGGCGCTG 58.921 50.000 7.64 0.00 0.00 5.18
3029 4982 1.464997 GTTTCAGATCGAAAAGGCGCT 59.535 47.619 7.64 0.00 45.11 5.92
3043 4996 1.876156 GTGAGTGGGAAGCTGTTTCAG 59.124 52.381 6.58 0.00 37.54 3.02
3056 5009 4.008074 ACAAACCATGTAGAGTGAGTGG 57.992 45.455 0.00 0.00 41.63 4.00
3067 5020 7.652909 CACATGTTTCAGAAATACAAACCATGT 59.347 33.333 15.35 15.35 46.36 3.21
3068 5021 7.359431 GCACATGTTTCAGAAATACAAACCATG 60.359 37.037 14.43 14.43 31.72 3.66
3069 5022 6.646240 GCACATGTTTCAGAAATACAAACCAT 59.354 34.615 0.00 0.00 30.32 3.55
3070 5023 5.982516 GCACATGTTTCAGAAATACAAACCA 59.017 36.000 0.00 0.00 30.32 3.67
3071 5024 5.982516 TGCACATGTTTCAGAAATACAAACC 59.017 36.000 0.00 0.00 30.32 3.27
3072 5025 6.144402 CCTGCACATGTTTCAGAAATACAAAC 59.856 38.462 20.70 0.00 0.00 2.93
3073 5026 6.215121 CCTGCACATGTTTCAGAAATACAAA 58.785 36.000 20.70 0.00 0.00 2.83
3074 5027 5.278907 CCCTGCACATGTTTCAGAAATACAA 60.279 40.000 20.70 0.00 0.00 2.41
3075 5028 4.218200 CCCTGCACATGTTTCAGAAATACA 59.782 41.667 20.70 0.00 0.00 2.29
3076 5029 4.737054 CCCTGCACATGTTTCAGAAATAC 58.263 43.478 20.70 0.00 0.00 1.89
3082 5035 0.892755 ATGCCCTGCACATGTTTCAG 59.107 50.000 14.82 14.82 43.04 3.02
3098 5051 3.250744 TGTGCTCGTTTCTACTGTATGC 58.749 45.455 0.00 0.00 0.00 3.14
3100 5053 4.798907 CGATTGTGCTCGTTTCTACTGTAT 59.201 41.667 0.00 0.00 34.00 2.29
3118 5071 3.627123 TGGAGAATTGTATGCACCGATTG 59.373 43.478 5.60 0.00 0.00 2.67
3156 5109 3.316308 AGTTTCAGTAAAGTTGCAGCTGG 59.684 43.478 17.12 0.00 0.00 4.85
3157 5110 4.558538 AGTTTCAGTAAAGTTGCAGCTG 57.441 40.909 10.11 10.11 0.00 4.24
3200 5269 2.173569 AGTTGAGAGGCCTTGTTCTTGT 59.826 45.455 6.77 0.00 0.00 3.16
3210 5279 6.382608 GTTTGAGAAATTTAGTTGAGAGGCC 58.617 40.000 0.00 0.00 0.00 5.19
3225 5294 0.469144 GGTGCCCCTGGTTTGAGAAA 60.469 55.000 0.00 0.00 0.00 2.52
3236 5305 0.916086 TGTTTCATATCGGTGCCCCT 59.084 50.000 0.00 0.00 0.00 4.79
3240 5309 2.098934 TGGCAATGTTTCATATCGGTGC 59.901 45.455 0.00 0.00 0.00 5.01
3241 5310 4.036616 TCATGGCAATGTTTCATATCGGTG 59.963 41.667 0.00 0.00 35.15 4.94
3242 5311 4.206375 TCATGGCAATGTTTCATATCGGT 58.794 39.130 0.00 0.00 35.15 4.69
3309 5388 3.621715 GGGATACTAGTCGCTTTTTGTGG 59.378 47.826 0.00 0.00 0.00 4.17
3337 5416 2.500392 TACCGGGAATTGAAGTTGGG 57.500 50.000 6.32 0.00 0.00 4.12
3419 5504 2.243957 TGTTCAACAGACGCCGCAG 61.244 57.895 0.00 0.00 0.00 5.18
3446 5531 1.141881 CTCCGTCCAGATGAACCCG 59.858 63.158 0.00 0.00 0.00 5.28
3467 5552 3.207669 GATGCCCTCCAGCTTGCG 61.208 66.667 0.00 0.00 0.00 4.85
3470 5555 2.739996 CCTCGATGCCCTCCAGCTT 61.740 63.158 0.00 0.00 0.00 3.74
3473 5558 1.144936 GTTCCTCGATGCCCTCCAG 59.855 63.158 0.00 0.00 0.00 3.86
3482 5567 4.189188 CGACGGGCGTTCCTCGAT 62.189 66.667 0.00 0.00 42.86 3.59
3535 5621 7.974243 TGAATGTTTTTCATATGAATCTGCG 57.026 32.000 18.61 0.00 35.48 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.