Multiple sequence alignment - TraesCS7A01G415700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G415700 chr7A 100.000 3911 0 0 1 3911 607560928 607557018 0.000000e+00 7223.0
1 TraesCS7A01G415700 chr7A 81.899 790 125 14 1150 1931 607714294 607713515 0.000000e+00 651.0
2 TraesCS7A01G415700 chr7A 80.892 785 136 8 1150 1929 607906635 607905860 1.200000e-169 606.0
3 TraesCS7A01G415700 chr7A 80.405 791 132 19 1150 1930 607707874 607707097 7.280000e-162 580.0
4 TraesCS7A01G415700 chr7A 82.601 546 87 6 1946 2487 607713545 607713004 3.540000e-130 475.0
5 TraesCS7A01G415700 chr7A 93.092 304 17 3 1 303 139202447 139202747 3.590000e-120 442.0
6 TraesCS7A01G415700 chr7A 91.830 306 21 3 1 303 139205011 139205315 1.300000e-114 424.0
7 TraesCS7A01G415700 chr7A 92.491 293 18 4 13 303 139203742 139204032 2.170000e-112 416.0
8 TraesCS7A01G415700 chr7A 91.205 307 22 4 1 303 139201182 139201487 2.810000e-111 412.0
9 TraesCS7A01G415700 chr7A 93.204 103 3 4 246 346 648669110 648669210 8.760000e-32 148.0
10 TraesCS7A01G415700 chr7A 93.204 103 3 4 246 346 648672166 648672266 8.760000e-32 148.0
11 TraesCS7A01G415700 chr7A 92.381 105 4 4 246 348 121905301 121905199 3.150000e-31 147.0
12 TraesCS7A01G415700 chr7A 91.509 106 5 4 244 347 59398291 59398394 4.070000e-30 143.0
13 TraesCS7A01G415700 chr7A 98.734 79 1 0 1 79 139203708 139203786 1.470000e-29 141.0
14 TraesCS7A01G415700 chr7A 94.444 54 3 0 884 937 607559991 607559938 2.500000e-12 84.2
15 TraesCS7A01G415700 chr7A 94.444 54 3 0 938 991 607560045 607559992 2.500000e-12 84.2
16 TraesCS7A01G415700 chr7D 96.853 2923 64 7 345 3254 527735808 527732901 0.000000e+00 4863.0
17 TraesCS7A01G415700 chr7D 83.418 790 114 13 1150 1931 527974969 527974189 0.000000e+00 717.0
18 TraesCS7A01G415700 chr7D 83.459 532 80 5 1960 2487 527974205 527973678 4.540000e-134 488.0
19 TraesCS7A01G415700 chr7D 96.169 261 10 0 3364 3624 527730622 527730362 1.000000e-115 427.0
20 TraesCS7A01G415700 chr7D 75.248 909 160 40 1992 2853 527787700 527786810 4.770000e-99 372.0
21 TraesCS7A01G415700 chr7D 97.902 143 3 0 3555 3697 527730173 527730031 8.390000e-62 248.0
22 TraesCS7A01G415700 chr7D 81.366 161 25 4 940 1100 527970138 527969983 4.100000e-25 126.0
23 TraesCS7A01G415700 chr7D 89.899 99 9 1 355 453 527975611 527975514 4.100000e-25 126.0
24 TraesCS7A01G415700 chr7D 98.571 70 1 0 3555 3624 527730216 527730147 1.480000e-24 124.0
25 TraesCS7A01G415700 chr7D 98.571 70 1 0 3555 3624 527730259 527730190 1.480000e-24 124.0
26 TraesCS7A01G415700 chr7D 98.571 70 1 0 3555 3624 527730302 527730233 1.480000e-24 124.0
27 TraesCS7A01G415700 chr7D 98.571 70 1 0 3555 3624 527730388 527730319 1.480000e-24 124.0
28 TraesCS7A01G415700 chr7D 97.143 70 2 0 3555 3624 527730345 527730276 6.860000e-23 119.0
29 TraesCS7A01G415700 chr7D 96.491 57 2 0 3314 3370 527732904 527732848 1.160000e-15 95.3
30 TraesCS7A01G415700 chr7D 96.552 58 1 1 884 940 527735218 527735161 1.160000e-15 95.3
31 TraesCS7A01G415700 chr7D 93.220 59 3 1 938 996 527735269 527735212 6.960000e-13 86.1
32 TraesCS7A01G415700 chr7B 97.248 2362 50 7 884 3233 564187625 564185267 0.000000e+00 3988.0
33 TraesCS7A01G415700 chr7B 95.223 649 25 3 348 996 564188210 564187568 0.000000e+00 1022.0
34 TraesCS7A01G415700 chr7B 81.313 792 132 11 1150 1931 565024103 565023318 2.560000e-176 628.0
35 TraesCS7A01G415700 chr7B 80.000 795 130 19 1155 1942 564993417 564992645 9.490000e-156 560.0
36 TraesCS7A01G415700 chr7B 85.234 535 65 9 1242 1771 564952847 564952322 4.450000e-149 538.0
37 TraesCS7A01G415700 chr7B 77.826 920 156 32 1992 2868 564999650 564998736 3.460000e-145 525.0
38 TraesCS7A01G415700 chr7B 97.015 201 6 0 3424 3624 564185128 564184928 4.840000e-89 339.0
39 TraesCS7A01G415700 chr7B 95.804 143 6 0 3555 3697 564184910 564184768 8.450000e-57 231.0
40 TraesCS7A01G415700 chr7B 80.795 302 50 6 1960 2257 565023334 565023037 3.040000e-56 230.0
41 TraesCS7A01G415700 chr7B 98.214 112 1 1 3316 3427 564185265 564185155 1.110000e-45 195.0
42 TraesCS7A01G415700 chr7B 85.135 148 17 4 346 492 564996418 564996275 3.150000e-31 147.0
43 TraesCS7A01G415700 chr7B 98.148 54 1 0 884 937 564187574 564187521 1.160000e-15 95.3
44 TraesCS7A01G415700 chr7B 93.220 59 3 1 938 996 564187676 564187619 6.960000e-13 86.1
45 TraesCS7A01G415700 chr3D 93.522 247 10 4 50 293 556837828 556837585 2.870000e-96 363.0
46 TraesCS7A01G415700 chr3D 86.765 68 5 1 14 77 242109316 242109383 5.420000e-09 73.1
47 TraesCS7A01G415700 chr2D 91.532 248 13 5 50 293 453693343 453693586 6.260000e-88 335.0
48 TraesCS7A01G415700 chr2D 92.537 67 5 0 387 453 258420372 258420438 3.220000e-16 97.1
49 TraesCS7A01G415700 chr2D 95.556 45 2 0 3266 3310 213893446 213893402 5.420000e-09 73.1
50 TraesCS7A01G415700 chr6A 92.050 239 12 5 58 293 530086503 530086737 2.910000e-86 329.0
51 TraesCS7A01G415700 chr6A 90.323 248 15 7 50 293 293324209 293323967 2.270000e-82 316.0
52 TraesCS7A01G415700 chr6A 91.824 159 12 1 3696 3854 577623819 577623976 1.830000e-53 220.0
53 TraesCS7A01G415700 chr6A 87.879 66 8 0 387 452 202132434 202132499 1.170000e-10 78.7
54 TraesCS7A01G415700 chr6A 100.000 38 0 0 3273 3310 382780598 382780561 1.950000e-08 71.3
55 TraesCS7A01G415700 chr6A 96.970 33 1 0 3282 3314 2401403 2401435 5.460000e-04 56.5
56 TraesCS7A01G415700 chr5D 90.417 240 17 4 57 293 416183708 416183472 1.060000e-80 311.0
57 TraesCS7A01G415700 chr5D 91.824 159 12 1 3696 3854 225272416 225272573 1.830000e-53 220.0
58 TraesCS7A01G415700 chr5D 100.000 55 0 0 3857 3911 542683266 542683212 6.910000e-18 102.0
59 TraesCS7A01G415700 chr5A 93.827 162 9 1 3696 3857 535518502 535518662 3.900000e-60 243.0
60 TraesCS7A01G415700 chr5A 91.975 162 13 0 3696 3857 433565638 433565799 1.090000e-55 228.0
61 TraesCS7A01G415700 chr5B 92.453 159 10 2 3696 3854 429424661 429424817 3.930000e-55 226.0
62 TraesCS7A01G415700 chr5B 93.333 105 5 2 246 349 472795549 472795446 1.880000e-33 154.0
63 TraesCS7A01G415700 chr5B 97.674 43 1 0 3268 3310 418319483 418319441 1.510000e-09 75.0
64 TraesCS7A01G415700 chr5B 97.674 43 1 0 3268 3310 418322674 418322632 1.510000e-09 75.0
65 TraesCS7A01G415700 chr5B 97.674 43 1 0 3268 3310 418324801 418324759 1.510000e-09 75.0
66 TraesCS7A01G415700 chr5B 92.000 50 2 2 3261 3310 419618843 419618890 7.010000e-08 69.4
67 TraesCS7A01G415700 chr3A 92.453 159 11 1 3696 3854 468323485 468323642 3.930000e-55 226.0
68 TraesCS7A01G415700 chr3A 91.358 162 13 1 3693 3854 721830155 721830315 1.830000e-53 220.0
69 TraesCS7A01G415700 chr3A 89.720 107 7 4 244 348 23260281 23260177 2.450000e-27 134.0
70 TraesCS7A01G415700 chr1D 90.173 173 15 2 3686 3857 100461832 100462003 1.410000e-54 224.0
71 TraesCS7A01G415700 chr6B 90.798 163 13 2 3692 3854 81010509 81010669 2.370000e-52 217.0
72 TraesCS7A01G415700 chr6B 92.453 53 3 1 3268 3319 120808813 120808761 1.510000e-09 75.0
73 TraesCS7A01G415700 chr2A 88.136 118 10 4 239 353 17725337 17725221 1.900000e-28 137.0
74 TraesCS7A01G415700 chr2A 85.714 112 8 8 240 349 606805843 606805948 1.150000e-20 111.0
75 TraesCS7A01G415700 chr4A 89.091 110 7 5 236 341 562605724 562605832 8.820000e-27 132.0
76 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 37693213 37693267 6.910000e-18 102.0
77 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 243183617 243183563 6.910000e-18 102.0
78 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 251835077 251835023 6.910000e-18 102.0
79 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 302734760 302734706 6.910000e-18 102.0
80 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 306604588 306604534 6.910000e-18 102.0
81 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 539674507 539674453 6.910000e-18 102.0
82 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 609476141 609476195 6.910000e-18 102.0
83 TraesCS7A01G415700 chr4B 100.000 55 0 0 3857 3911 625963332 625963278 6.910000e-18 102.0
84 TraesCS7A01G415700 chr4B 95.349 43 2 0 3268 3310 44252490 44252532 7.010000e-08 69.4
85 TraesCS7A01G415700 chr4B 93.617 47 2 1 3268 3314 99962354 99962309 7.010000e-08 69.4
86 TraesCS7A01G415700 chrUn 94.000 50 1 2 3261 3310 357738490 357738537 1.510000e-09 75.0
87 TraesCS7A01G415700 chrUn 94.000 50 1 2 3261 3310 378019351 378019398 1.510000e-09 75.0
88 TraesCS7A01G415700 chrUn 94.000 50 1 2 3261 3310 452685184 452685231 1.510000e-09 75.0
89 TraesCS7A01G415700 chr1B 95.455 44 2 0 3268 3311 669746022 669746065 1.950000e-08 71.3
90 TraesCS7A01G415700 chr1B 92.000 50 2 2 3261 3310 567855524 567855571 7.010000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G415700 chr7A 607557018 607560928 3910 True 2463.800000 7223 96.296000 1 3911 3 chr7A.!!$R4 3910
1 TraesCS7A01G415700 chr7A 607905860 607906635 775 True 606.000000 606 80.892000 1150 1929 1 chr7A.!!$R3 779
2 TraesCS7A01G415700 chr7A 607707097 607707874 777 True 580.000000 580 80.405000 1150 1930 1 chr7A.!!$R2 780
3 TraesCS7A01G415700 chr7A 607713004 607714294 1290 True 563.000000 651 82.250000 1150 2487 2 chr7A.!!$R5 1337
4 TraesCS7A01G415700 chr7A 139201182 139205315 4133 False 367.000000 442 93.470400 1 303 5 chr7A.!!$F2 302
5 TraesCS7A01G415700 chr7D 527730031 527735808 5777 True 584.518182 4863 97.146727 345 3697 11 chr7D.!!$R2 3352
6 TraesCS7A01G415700 chr7D 527786810 527787700 890 True 372.000000 372 75.248000 1992 2853 1 chr7D.!!$R1 861
7 TraesCS7A01G415700 chr7D 527969983 527975611 5628 True 364.250000 717 84.535500 355 2487 4 chr7D.!!$R3 2132
8 TraesCS7A01G415700 chr7B 564184768 564188210 3442 True 850.914286 3988 96.410286 348 3697 7 chr7B.!!$R2 3349
9 TraesCS7A01G415700 chr7B 564952322 564952847 525 True 538.000000 538 85.234000 1242 1771 1 chr7B.!!$R1 529
10 TraesCS7A01G415700 chr7B 565023037 565024103 1066 True 429.000000 628 81.054000 1150 2257 2 chr7B.!!$R4 1107
11 TraesCS7A01G415700 chr7B 564992645 564999650 7005 True 410.666667 560 80.987000 346 2868 3 chr7B.!!$R3 2522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.413434 AGAAAAACCATGGGAGGGGG 59.587 55.000 18.09 0.0 0.0 5.40 F
285 286 1.065998 TGGGAGGAAATAAACCGGACG 60.066 52.381 9.46 0.0 0.0 4.79 F
1561 6858 1.203038 TGGTTGATGATGTTGGTGCCT 60.203 47.619 0.00 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 7335 0.249573 AGCAGCACACCAAAATGCAC 60.250 50.000 0.00 0.0 44.59 4.57 R
2085 7387 7.877612 TCAGATTCTAGTTTAAGCAACACATCA 59.122 33.333 0.00 0.0 37.93 3.07 R
3290 11419 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 8.378228 GCAAATTGCATTAATGAGATAGATCG 57.622 34.615 19.73 0.09 44.26 3.69
128 129 7.484007 GCAAATTGCATTAATGAGATAGATCGG 59.516 37.037 19.73 0.00 44.26 4.18
129 130 8.509690 CAAATTGCATTAATGAGATAGATCGGT 58.490 33.333 19.73 0.00 0.00 4.69
130 131 8.627208 AATTGCATTAATGAGATAGATCGGTT 57.373 30.769 19.73 0.00 0.00 4.44
131 132 7.425577 TTGCATTAATGAGATAGATCGGTTG 57.574 36.000 19.73 0.00 0.00 3.77
132 133 6.758254 TGCATTAATGAGATAGATCGGTTGA 58.242 36.000 19.73 0.00 0.00 3.18
133 134 7.389232 TGCATTAATGAGATAGATCGGTTGAT 58.611 34.615 19.73 0.00 37.60 2.57
134 135 7.879677 TGCATTAATGAGATAGATCGGTTGATT 59.120 33.333 19.73 0.00 34.09 2.57
137 138 8.607441 TTAATGAGATAGATCGGTTGATTTGG 57.393 34.615 0.00 0.00 34.09 3.28
138 139 5.869649 TGAGATAGATCGGTTGATTTGGA 57.130 39.130 0.00 0.00 34.09 3.53
140 141 7.539034 TGAGATAGATCGGTTGATTTGGATA 57.461 36.000 0.00 0.00 34.09 2.59
141 142 7.962441 TGAGATAGATCGGTTGATTTGGATAA 58.038 34.615 0.00 0.00 34.09 1.75
142 143 8.090831 TGAGATAGATCGGTTGATTTGGATAAG 58.909 37.037 0.00 0.00 34.09 1.73
143 144 7.967908 AGATAGATCGGTTGATTTGGATAAGT 58.032 34.615 0.00 0.00 34.09 2.24
145 146 9.706691 GATAGATCGGTTGATTTGGATAAGTTA 57.293 33.333 0.00 0.00 34.09 2.24
146 147 9.712305 ATAGATCGGTTGATTTGGATAAGTTAG 57.288 33.333 0.00 0.00 34.09 2.34
147 148 6.992715 AGATCGGTTGATTTGGATAAGTTAGG 59.007 38.462 0.00 0.00 34.09 2.69
148 149 6.302535 TCGGTTGATTTGGATAAGTTAGGA 57.697 37.500 0.00 0.00 0.00 2.94
149 150 6.713276 TCGGTTGATTTGGATAAGTTAGGAA 58.287 36.000 0.00 0.00 0.00 3.36
150 151 7.169591 TCGGTTGATTTGGATAAGTTAGGAAA 58.830 34.615 0.00 0.00 0.00 3.13
151 152 7.335924 TCGGTTGATTTGGATAAGTTAGGAAAG 59.664 37.037 0.00 0.00 0.00 2.62
153 154 8.803235 GGTTGATTTGGATAAGTTAGGAAAGTT 58.197 33.333 0.00 0.00 32.89 2.66
159 160 9.901172 TTTGGATAAGTTAGGAAAGTTAGATCC 57.099 33.333 0.00 0.00 35.48 3.36
160 161 7.723324 TGGATAAGTTAGGAAAGTTAGATCCG 58.277 38.462 0.00 0.00 36.63 4.18
162 163 7.652507 GGATAAGTTAGGAAAGTTAGATCCGTG 59.347 40.741 0.00 0.00 40.78 4.94
164 165 6.793505 AGTTAGGAAAGTTAGATCCGTGAT 57.206 37.500 0.00 0.00 40.78 3.06
165 166 6.807789 AGTTAGGAAAGTTAGATCCGTGATC 58.192 40.000 5.94 5.94 40.78 2.92
167 168 5.941555 AGGAAAGTTAGATCCGTGATCTT 57.058 39.130 17.79 4.02 45.86 2.40
168 169 6.301169 AGGAAAGTTAGATCCGTGATCTTT 57.699 37.500 17.79 9.02 45.86 2.52
169 170 6.712276 AGGAAAGTTAGATCCGTGATCTTTT 58.288 36.000 17.79 13.37 45.86 2.27
170 171 6.595716 AGGAAAGTTAGATCCGTGATCTTTTG 59.404 38.462 17.79 0.00 45.86 2.44
171 172 6.371825 GGAAAGTTAGATCCGTGATCTTTTGT 59.628 38.462 17.79 4.12 45.86 2.83
173 174 9.099454 GAAAGTTAGATCCGTGATCTTTTGTAT 57.901 33.333 17.79 5.24 45.86 2.29
174 175 8.425577 AAGTTAGATCCGTGATCTTTTGTATG 57.574 34.615 17.79 0.00 45.86 2.39
175 176 7.556844 AGTTAGATCCGTGATCTTTTGTATGT 58.443 34.615 17.79 0.00 45.86 2.29
176 177 8.041323 AGTTAGATCCGTGATCTTTTGTATGTT 58.959 33.333 17.79 0.00 45.86 2.71
177 178 8.665685 GTTAGATCCGTGATCTTTTGTATGTTT 58.334 33.333 17.79 0.00 45.86 2.83
178 179 7.076842 AGATCCGTGATCTTTTGTATGTTTG 57.923 36.000 9.74 0.00 45.86 2.93
179 180 5.621197 TCCGTGATCTTTTGTATGTTTGG 57.379 39.130 0.00 0.00 0.00 3.28
180 181 5.309638 TCCGTGATCTTTTGTATGTTTGGA 58.690 37.500 0.00 0.00 0.00 3.53
181 182 5.765677 TCCGTGATCTTTTGTATGTTTGGAA 59.234 36.000 0.00 0.00 0.00 3.53
182 183 6.263392 TCCGTGATCTTTTGTATGTTTGGAAA 59.737 34.615 0.00 0.00 0.00 3.13
183 184 6.582295 CCGTGATCTTTTGTATGTTTGGAAAG 59.418 38.462 0.00 0.00 0.00 2.62
184 185 7.138736 CGTGATCTTTTGTATGTTTGGAAAGT 58.861 34.615 0.00 0.00 0.00 2.66
186 187 6.922957 TGATCTTTTGTATGTTTGGAAAGTGC 59.077 34.615 0.00 0.00 0.00 4.40
187 188 6.463995 TCTTTTGTATGTTTGGAAAGTGCT 57.536 33.333 0.00 0.00 0.00 4.40
188 189 6.272318 TCTTTTGTATGTTTGGAAAGTGCTG 58.728 36.000 0.00 0.00 0.00 4.41
189 190 5.843673 TTTGTATGTTTGGAAAGTGCTGA 57.156 34.783 0.00 0.00 0.00 4.26
190 191 6.403866 TTTGTATGTTTGGAAAGTGCTGAT 57.596 33.333 0.00 0.00 0.00 2.90
191 192 6.403866 TTGTATGTTTGGAAAGTGCTGATT 57.596 33.333 0.00 0.00 0.00 2.57
192 193 6.403866 TGTATGTTTGGAAAGTGCTGATTT 57.596 33.333 0.00 0.00 0.00 2.17
193 194 6.815089 TGTATGTTTGGAAAGTGCTGATTTT 58.185 32.000 0.00 0.00 0.00 1.82
194 195 7.271511 TGTATGTTTGGAAAGTGCTGATTTTT 58.728 30.769 0.00 0.00 0.00 1.94
247 248 8.620116 AAACCAATTGATAAGAAAAACCATGG 57.380 30.769 11.19 11.19 0.00 3.66
248 249 6.710278 ACCAATTGATAAGAAAAACCATGGG 58.290 36.000 18.09 0.00 0.00 4.00
249 250 6.500049 ACCAATTGATAAGAAAAACCATGGGA 59.500 34.615 18.09 0.00 0.00 4.37
250 251 7.043565 CCAATTGATAAGAAAAACCATGGGAG 58.956 38.462 18.09 0.00 0.00 4.30
251 252 6.796785 ATTGATAAGAAAAACCATGGGAGG 57.203 37.500 18.09 0.00 0.00 4.30
252 253 4.609301 TGATAAGAAAAACCATGGGAGGG 58.391 43.478 18.09 0.00 0.00 4.30
253 254 2.325661 AAGAAAAACCATGGGAGGGG 57.674 50.000 18.09 0.00 0.00 4.79
254 255 0.413434 AGAAAAACCATGGGAGGGGG 59.587 55.000 18.09 0.00 0.00 5.40
257 258 2.105640 AAAACCATGGGAGGGGGTGG 62.106 60.000 18.09 0.00 34.51 4.61
260 261 3.743017 CATGGGAGGGGGTGGTGG 61.743 72.222 0.00 0.00 0.00 4.61
265 266 4.677151 GAGGGGGTGGTGGGAGGT 62.677 72.222 0.00 0.00 0.00 3.85
269 270 4.995058 GGGTGGTGGGAGGTGGGA 62.995 72.222 0.00 0.00 0.00 4.37
271 272 3.330720 GTGGTGGGAGGTGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
272 273 3.537506 TGGTGGGAGGTGGGAGGA 61.538 66.667 0.00 0.00 0.00 3.71
275 276 1.214992 GGTGGGAGGTGGGAGGAAAT 61.215 60.000 0.00 0.00 0.00 2.17
276 277 1.591768 GTGGGAGGTGGGAGGAAATA 58.408 55.000 0.00 0.00 0.00 1.40
277 278 1.920351 GTGGGAGGTGGGAGGAAATAA 59.080 52.381 0.00 0.00 0.00 1.40
278 279 2.310647 GTGGGAGGTGGGAGGAAATAAA 59.689 50.000 0.00 0.00 0.00 1.40
279 280 2.310647 TGGGAGGTGGGAGGAAATAAAC 59.689 50.000 0.00 0.00 0.00 2.01
280 281 2.357881 GGGAGGTGGGAGGAAATAAACC 60.358 54.545 0.00 0.00 0.00 3.27
284 285 2.362736 GTGGGAGGAAATAAACCGGAC 58.637 52.381 9.46 0.00 0.00 4.79
285 286 1.065998 TGGGAGGAAATAAACCGGACG 60.066 52.381 9.46 0.00 0.00 4.79
286 287 1.207811 GGGAGGAAATAAACCGGACGA 59.792 52.381 9.46 0.00 0.00 4.20
287 288 2.355007 GGGAGGAAATAAACCGGACGAA 60.355 50.000 9.46 0.00 0.00 3.85
288 289 3.337358 GGAGGAAATAAACCGGACGAAA 58.663 45.455 9.46 0.00 0.00 3.46
289 290 3.752747 GGAGGAAATAAACCGGACGAAAA 59.247 43.478 9.46 0.00 0.00 2.29
314 315 3.981313 ACGAAAGTGGTGGGGACT 58.019 55.556 0.00 0.00 46.97 3.85
315 316 3.152662 ACGAAAGTGGTGGGGACTA 57.847 52.632 0.00 0.00 46.97 2.59
316 317 1.652947 ACGAAAGTGGTGGGGACTAT 58.347 50.000 0.00 0.00 46.97 2.12
317 318 1.982958 ACGAAAGTGGTGGGGACTATT 59.017 47.619 0.00 0.00 46.97 1.73
318 319 2.027469 ACGAAAGTGGTGGGGACTATTC 60.027 50.000 0.00 0.00 46.97 1.75
319 320 2.027561 CGAAAGTGGTGGGGACTATTCA 60.028 50.000 0.00 0.00 0.00 2.57
320 321 3.558321 CGAAAGTGGTGGGGACTATTCAA 60.558 47.826 0.00 0.00 0.00 2.69
322 323 1.633945 AGTGGTGGGGACTATTCAACC 59.366 52.381 0.00 0.00 0.00 3.77
323 324 1.353022 GTGGTGGGGACTATTCAACCA 59.647 52.381 0.00 0.00 0.00 3.67
324 325 2.066592 TGGTGGGGACTATTCAACCAA 58.933 47.619 0.00 0.00 33.51 3.67
325 326 2.224917 TGGTGGGGACTATTCAACCAAC 60.225 50.000 4.69 4.69 38.11 3.77
326 327 2.041216 GGTGGGGACTATTCAACCAACT 59.959 50.000 4.47 0.00 35.90 3.16
329 330 2.027469 GGGGACTATTCAACCAACTCGT 60.027 50.000 0.00 0.00 0.00 4.18
330 331 3.259902 GGGACTATTCAACCAACTCGTC 58.740 50.000 0.00 0.00 0.00 4.20
331 332 3.259902 GGACTATTCAACCAACTCGTCC 58.740 50.000 0.00 0.00 33.73 4.79
332 333 3.306502 GGACTATTCAACCAACTCGTCCA 60.307 47.826 0.00 0.00 39.47 4.02
334 335 4.906618 ACTATTCAACCAACTCGTCCATT 58.093 39.130 0.00 0.00 0.00 3.16
338 339 2.901192 TCAACCAACTCGTCCATTAGGA 59.099 45.455 0.00 0.00 43.21 2.94
339 340 3.056107 TCAACCAACTCGTCCATTAGGAG 60.056 47.826 0.00 0.00 46.92 3.69
519 3409 1.809684 GGTTTGAGACCTAGCACCAC 58.190 55.000 0.00 0.00 45.55 4.16
666 3564 8.733128 CGATATTTACCAAAATTGTCATCGTTG 58.267 33.333 0.00 0.00 36.25 4.10
735 3633 2.557924 TGCTTTAAAGTGGCATGGTGAG 59.442 45.455 16.38 0.00 0.00 3.51
762 3660 4.058124 GGCAACCCTTCAAAAATGTCTTC 58.942 43.478 0.00 0.00 0.00 2.87
768 3666 5.480422 ACCCTTCAAAAATGTCTTCCCATAC 59.520 40.000 0.00 0.00 0.00 2.39
796 3694 5.889853 ACTGTTCATCCATCATATTGTTGCT 59.110 36.000 0.00 0.00 0.00 3.91
984 6276 5.999600 TGGATACATGAGTGCAGGAATAATG 59.000 40.000 0.00 0.00 46.17 1.90
1125 6417 3.133542 CCTCTATGGACATGTCTTCTGCA 59.866 47.826 24.50 14.15 38.35 4.41
1197 6489 3.389925 TCTTGGGCAGAAAAAGCAATG 57.610 42.857 0.00 0.00 0.00 2.82
1523 6820 1.336702 CGAGGACATGGATGAGCTAGC 60.337 57.143 6.62 6.62 0.00 3.42
1561 6858 1.203038 TGGTTGATGATGTTGGTGCCT 60.203 47.619 0.00 0.00 0.00 4.75
1661 6958 2.017049 CCATTCATTCTTCGTCCCACC 58.983 52.381 0.00 0.00 0.00 4.61
2033 7335 4.769688 TGTGGCATAGTAAAGACAGATGG 58.230 43.478 0.00 0.00 0.00 3.51
2490 8787 4.450305 AGAGCCTATTCCCTCGTACTTA 57.550 45.455 0.00 0.00 33.39 2.24
2494 8791 7.008941 AGAGCCTATTCCCTCGTACTTATTTA 58.991 38.462 0.00 0.00 33.39 1.40
2575 8978 9.196552 GGAATTAAGTTTTGACCATTTCTTCAG 57.803 33.333 0.00 0.00 0.00 3.02
2778 10809 1.671901 CCCACCACAACAGGCGTTTT 61.672 55.000 0.00 0.00 31.13 2.43
2929 10961 9.407380 ACACATAGACATAGCAATTTTATTCCA 57.593 29.630 0.00 0.00 0.00 3.53
3019 11060 4.385405 AGAGCCGTGGCAGCAGAC 62.385 66.667 14.29 0.00 44.88 3.51
3045 11087 2.886862 TGGACCAAATGTTGCAACAG 57.113 45.000 33.44 23.13 43.04 3.16
3250 11379 1.003118 GGCAGTGGTACCATGAGTCAA 59.997 52.381 19.72 0.00 0.00 3.18
3251 11380 2.350522 GCAGTGGTACCATGAGTCAAG 58.649 52.381 19.72 2.96 0.00 3.02
3252 11381 2.289694 GCAGTGGTACCATGAGTCAAGT 60.290 50.000 19.72 0.16 0.00 3.16
3253 11382 3.056107 GCAGTGGTACCATGAGTCAAGTA 60.056 47.826 19.72 0.00 0.00 2.24
3254 11383 4.495422 CAGTGGTACCATGAGTCAAGTAC 58.505 47.826 19.72 20.68 35.44 2.73
3255 11384 4.220821 CAGTGGTACCATGAGTCAAGTACT 59.779 45.833 19.72 12.66 42.80 2.73
3264 11393 0.896226 AGTCAAGTACTCCCTTCCGC 59.104 55.000 0.00 0.00 30.33 5.54
3265 11394 0.108281 GTCAAGTACTCCCTTCCGCC 60.108 60.000 0.00 0.00 0.00 6.13
3266 11395 0.252103 TCAAGTACTCCCTTCCGCCT 60.252 55.000 0.00 0.00 0.00 5.52
3267 11396 0.613777 CAAGTACTCCCTTCCGCCTT 59.386 55.000 0.00 0.00 0.00 4.35
3268 11397 1.003233 CAAGTACTCCCTTCCGCCTTT 59.997 52.381 0.00 0.00 0.00 3.11
3269 11398 1.359168 AGTACTCCCTTCCGCCTTTT 58.641 50.000 0.00 0.00 0.00 2.27
3270 11399 1.703513 AGTACTCCCTTCCGCCTTTTT 59.296 47.619 0.00 0.00 0.00 1.94
3271 11400 1.810755 GTACTCCCTTCCGCCTTTTTG 59.189 52.381 0.00 0.00 0.00 2.44
3272 11401 0.185175 ACTCCCTTCCGCCTTTTTGT 59.815 50.000 0.00 0.00 0.00 2.83
3273 11402 1.328279 CTCCCTTCCGCCTTTTTGTT 58.672 50.000 0.00 0.00 0.00 2.83
3274 11403 1.269723 CTCCCTTCCGCCTTTTTGTTC 59.730 52.381 0.00 0.00 0.00 3.18
3275 11404 1.036707 CCCTTCCGCCTTTTTGTTCA 58.963 50.000 0.00 0.00 0.00 3.18
3276 11405 1.618343 CCCTTCCGCCTTTTTGTTCAT 59.382 47.619 0.00 0.00 0.00 2.57
3277 11406 2.037121 CCCTTCCGCCTTTTTGTTCATT 59.963 45.455 0.00 0.00 0.00 2.57
3278 11407 3.494223 CCCTTCCGCCTTTTTGTTCATTT 60.494 43.478 0.00 0.00 0.00 2.32
3279 11408 4.126437 CCTTCCGCCTTTTTGTTCATTTT 58.874 39.130 0.00 0.00 0.00 1.82
3280 11409 4.024977 CCTTCCGCCTTTTTGTTCATTTTG 60.025 41.667 0.00 0.00 0.00 2.44
3281 11410 4.392921 TCCGCCTTTTTGTTCATTTTGA 57.607 36.364 0.00 0.00 0.00 2.69
3282 11411 4.954875 TCCGCCTTTTTGTTCATTTTGAT 58.045 34.783 0.00 0.00 0.00 2.57
3283 11412 4.749099 TCCGCCTTTTTGTTCATTTTGATG 59.251 37.500 0.00 0.00 0.00 3.07
3284 11413 4.749099 CCGCCTTTTTGTTCATTTTGATGA 59.251 37.500 0.00 0.00 0.00 2.92
3285 11414 5.333263 CCGCCTTTTTGTTCATTTTGATGAC 60.333 40.000 0.00 0.00 0.00 3.06
3286 11415 5.233902 CGCCTTTTTGTTCATTTTGATGACA 59.766 36.000 0.00 0.00 0.00 3.58
3287 11416 6.238049 CGCCTTTTTGTTCATTTTGATGACAA 60.238 34.615 0.00 0.00 0.00 3.18
3288 11417 7.127686 GCCTTTTTGTTCATTTTGATGACAAG 58.872 34.615 0.00 0.00 37.32 3.16
3289 11418 7.127686 CCTTTTTGTTCATTTTGATGACAAGC 58.872 34.615 0.00 0.00 37.32 4.01
3290 11419 7.201626 CCTTTTTGTTCATTTTGATGACAAGCA 60.202 33.333 0.00 0.00 37.32 3.91
3291 11420 7.789273 TTTTGTTCATTTTGATGACAAGCAT 57.211 28.000 0.00 0.00 40.77 3.79
3292 11421 7.789273 TTTGTTCATTTTGATGACAAGCATT 57.211 28.000 0.00 0.00 37.34 3.56
3293 11422 7.789273 TTGTTCATTTTGATGACAAGCATTT 57.211 28.000 0.00 0.00 37.34 2.32
3294 11423 7.410800 TGTTCATTTTGATGACAAGCATTTC 57.589 32.000 0.00 0.00 37.34 2.17
3295 11424 6.424509 TGTTCATTTTGATGACAAGCATTTCC 59.575 34.615 0.00 0.00 37.34 3.13
3296 11425 5.162794 TCATTTTGATGACAAGCATTTCCG 58.837 37.500 0.00 0.00 37.34 4.30
3297 11426 3.574284 TTTGATGACAAGCATTTCCGG 57.426 42.857 0.00 0.00 37.34 5.14
3298 11427 2.488204 TGATGACAAGCATTTCCGGA 57.512 45.000 0.00 0.00 37.34 5.14
3299 11428 2.083774 TGATGACAAGCATTTCCGGAC 58.916 47.619 1.83 0.00 37.34 4.79
3300 11429 1.062587 GATGACAAGCATTTCCGGACG 59.937 52.381 1.83 0.00 37.34 4.79
3301 11430 0.953471 TGACAAGCATTTCCGGACGG 60.953 55.000 1.83 3.96 0.00 4.79
3302 11431 0.672401 GACAAGCATTTCCGGACGGA 60.672 55.000 1.83 9.76 43.52 4.69
3303 11432 0.673644 ACAAGCATTTCCGGACGGAG 60.674 55.000 13.64 3.92 46.06 4.63
3304 11433 1.078426 AAGCATTTCCGGACGGAGG 60.078 57.895 13.64 8.82 46.06 4.30
3305 11434 2.513897 GCATTTCCGGACGGAGGG 60.514 66.667 13.64 8.49 46.06 4.30
3306 11435 3.026431 GCATTTCCGGACGGAGGGA 62.026 63.158 13.64 4.95 46.06 4.20
3307 11436 1.144057 CATTTCCGGACGGAGGGAG 59.856 63.158 13.64 2.33 46.06 4.30
3308 11437 1.305887 ATTTCCGGACGGAGGGAGT 60.306 57.895 13.64 0.00 46.06 3.85
3309 11438 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3310 11439 0.251742 TTTCCGGACGGAGGGAGTAA 60.252 55.000 13.64 1.47 46.06 2.24
3311 11440 0.682209 TTCCGGACGGAGGGAGTAAG 60.682 60.000 13.64 0.00 46.06 2.34
3312 11441 1.379576 CCGGACGGAGGGAGTAAGT 60.380 63.158 4.40 0.00 37.50 2.24
3437 13827 5.705905 AGAAGGCAAACACTAGTTTATGGTC 59.294 40.000 0.00 0.00 45.80 4.02
3438 13828 4.332828 AGGCAAACACTAGTTTATGGTCC 58.667 43.478 0.00 0.00 45.80 4.46
3552 13942 6.920758 GGATCATGCTGACGATAGGTATTATC 59.079 42.308 0.00 0.00 43.77 1.75
3603 14251 6.144402 CCAAGTGTTTTGACTATTGCATCAAC 59.856 38.462 0.00 0.00 34.61 3.18
3697 15104 7.570691 GCAGTGTCAGTACCTAATGTTTGTTAC 60.571 40.741 0.00 0.00 0.00 2.50
3699 15106 7.871463 AGTGTCAGTACCTAATGTTTGTTACTC 59.129 37.037 0.00 0.00 0.00 2.59
3701 15108 6.592994 GTCAGTACCTAATGTTTGTTACTCCC 59.407 42.308 0.00 0.00 0.00 4.30
3702 15109 6.499350 TCAGTACCTAATGTTTGTTACTCCCT 59.501 38.462 0.00 0.00 0.00 4.20
3703 15110 6.817140 CAGTACCTAATGTTTGTTACTCCCTC 59.183 42.308 0.00 0.00 0.00 4.30
3705 15112 4.189231 CCTAATGTTTGTTACTCCCTCCG 58.811 47.826 0.00 0.00 0.00 4.63
3706 15113 2.781681 ATGTTTGTTACTCCCTCCGG 57.218 50.000 0.00 0.00 0.00 5.14
3708 15115 1.345415 TGTTTGTTACTCCCTCCGGTC 59.655 52.381 0.00 0.00 0.00 4.79
3709 15116 0.978907 TTTGTTACTCCCTCCGGTCC 59.021 55.000 0.00 0.00 0.00 4.46
3710 15117 0.115745 TTGTTACTCCCTCCGGTCCT 59.884 55.000 0.00 0.00 0.00 3.85
3713 15120 1.627329 GTTACTCCCTCCGGTCCTTTT 59.373 52.381 0.00 0.00 0.00 2.27
3714 15121 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
3715 15122 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3716 15123 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
3717 15124 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
3718 15125 1.904537 TCCCTCCGGTCCTTTTTAGTC 59.095 52.381 0.00 0.00 0.00 2.59
3719 15126 1.907255 CCCTCCGGTCCTTTTTAGTCT 59.093 52.381 0.00 0.00 0.00 3.24
3720 15127 2.354805 CCCTCCGGTCCTTTTTAGTCTG 60.355 54.545 0.00 0.00 0.00 3.51
3721 15128 2.347731 CTCCGGTCCTTTTTAGTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3722 15129 1.695242 TCCGGTCCTTTTTAGTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3723 15130 2.304761 TCCGGTCCTTTTTAGTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
3724 15131 3.516300 TCCGGTCCTTTTTAGTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
3725 15132 4.163458 TCCGGTCCTTTTTAGTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
3728 15135 6.202954 CCGGTCCTTTTTAGTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
3730 15137 7.280205 CGGTCCTTTTTAGTCTGCATATAAGTT 59.720 37.037 0.00 0.00 0.00 2.66
3738 15145 9.719355 TTTAGTCTGCATATAAGTTTTGTCTGA 57.281 29.630 0.00 0.00 0.00 3.27
3740 15147 8.261492 AGTCTGCATATAAGTTTTGTCTGAAG 57.739 34.615 0.00 0.00 0.00 3.02
3741 15148 7.880195 AGTCTGCATATAAGTTTTGTCTGAAGT 59.120 33.333 0.00 0.00 0.00 3.01
3742 15149 8.171840 GTCTGCATATAAGTTTTGTCTGAAGTC 58.828 37.037 0.00 0.00 0.00 3.01
3743 15150 7.877612 TCTGCATATAAGTTTTGTCTGAAGTCA 59.122 33.333 0.00 0.00 0.00 3.41
3744 15151 8.389779 TGCATATAAGTTTTGTCTGAAGTCAA 57.610 30.769 0.00 0.00 0.00 3.18
3745 15152 8.845227 TGCATATAAGTTTTGTCTGAAGTCAAA 58.155 29.630 0.00 0.00 32.81 2.69
3746 15153 9.334693 GCATATAAGTTTTGTCTGAAGTCAAAG 57.665 33.333 3.59 0.00 35.29 2.77
3751 15158 8.738645 AAGTTTTGTCTGAAGTCAAAGTATCT 57.261 30.769 3.59 0.84 35.29 1.98
3752 15159 8.371770 AGTTTTGTCTGAAGTCAAAGTATCTC 57.628 34.615 3.59 0.00 35.29 2.75
3754 15161 9.477484 GTTTTGTCTGAAGTCAAAGTATCTCTA 57.523 33.333 3.59 0.00 35.29 2.43
3755 15162 9.477484 TTTTGTCTGAAGTCAAAGTATCTCTAC 57.523 33.333 3.59 0.00 35.29 2.59
3756 15163 8.410673 TTGTCTGAAGTCAAAGTATCTCTACT 57.589 34.615 0.00 0.00 39.97 2.57
3885 16323 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
3886 16324 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
3887 16325 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
3888 16326 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
3892 16330 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
3895 16333 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
3896 16334 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
3897 16335 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
3898 16336 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
3899 16337 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
3900 16338 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
3901 16339 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
3902 16340 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
3903 16341 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
3904 16342 4.337145 AGCGAGAATAGTACTAGGATGGG 58.663 47.826 8.85 0.00 0.00 4.00
3905 16343 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
3906 16344 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
3907 16345 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
3908 16346 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 8.668510 TGCAATTTGCTTTAGGAAACAAATAA 57.331 26.923 21.19 0.00 45.31 1.40
87 88 8.845413 ATGCAATTTGCTTTAGGAAACAAATA 57.155 26.923 21.19 0.00 45.31 1.40
89 90 7.565323 AATGCAATTTGCTTTAGGAAACAAA 57.435 28.000 21.19 0.00 45.31 2.83
90 91 8.668510 TTAATGCAATTTGCTTTAGGAAACAA 57.331 26.923 21.19 8.47 45.31 2.83
92 93 8.934825 TCATTAATGCAATTTGCTTTAGGAAAC 58.065 29.630 21.19 0.00 45.31 2.78
93 94 9.153721 CTCATTAATGCAATTTGCTTTAGGAAA 57.846 29.630 21.19 12.43 45.31 3.13
94 95 8.530311 TCTCATTAATGCAATTTGCTTTAGGAA 58.470 29.630 21.19 12.73 45.31 3.36
95 96 8.065473 TCTCATTAATGCAATTTGCTTTAGGA 57.935 30.769 21.19 20.45 45.31 2.94
96 97 8.882415 ATCTCATTAATGCAATTTGCTTTAGG 57.118 30.769 21.19 18.17 45.31 2.69
100 101 9.909644 GATCTATCTCATTAATGCAATTTGCTT 57.090 29.630 21.19 12.91 45.31 3.91
101 102 8.235226 CGATCTATCTCATTAATGCAATTTGCT 58.765 33.333 21.19 5.71 45.31 3.91
103 104 8.509690 ACCGATCTATCTCATTAATGCAATTTG 58.490 33.333 10.76 0.00 37.87 2.32
104 105 8.627208 ACCGATCTATCTCATTAATGCAATTT 57.373 30.769 10.76 0.00 37.87 1.82
105 106 8.509690 CAACCGATCTATCTCATTAATGCAATT 58.490 33.333 10.76 0.00 41.28 2.32
107 108 7.216494 TCAACCGATCTATCTCATTAATGCAA 58.784 34.615 10.76 1.52 0.00 4.08
108 109 6.758254 TCAACCGATCTATCTCATTAATGCA 58.242 36.000 10.76 0.00 0.00 3.96
109 110 7.840342 ATCAACCGATCTATCTCATTAATGC 57.160 36.000 10.76 0.00 0.00 3.56
113 114 7.962441 TCCAAATCAACCGATCTATCTCATTA 58.038 34.615 0.00 0.00 0.00 1.90
115 116 6.425210 TCCAAATCAACCGATCTATCTCAT 57.575 37.500 0.00 0.00 0.00 2.90
116 117 5.869649 TCCAAATCAACCGATCTATCTCA 57.130 39.130 0.00 0.00 0.00 3.27
117 118 8.091449 ACTTATCCAAATCAACCGATCTATCTC 58.909 37.037 0.00 0.00 0.00 2.75
118 119 7.967908 ACTTATCCAAATCAACCGATCTATCT 58.032 34.615 0.00 0.00 0.00 1.98
119 120 8.608844 AACTTATCCAAATCAACCGATCTATC 57.391 34.615 0.00 0.00 0.00 2.08
120 121 9.712305 CTAACTTATCCAAATCAACCGATCTAT 57.288 33.333 0.00 0.00 0.00 1.98
121 122 8.148351 CCTAACTTATCCAAATCAACCGATCTA 58.852 37.037 0.00 0.00 0.00 1.98
123 124 6.990349 TCCTAACTTATCCAAATCAACCGATC 59.010 38.462 0.00 0.00 0.00 3.69
124 125 6.895782 TCCTAACTTATCCAAATCAACCGAT 58.104 36.000 0.00 0.00 0.00 4.18
125 126 6.302535 TCCTAACTTATCCAAATCAACCGA 57.697 37.500 0.00 0.00 0.00 4.69
126 127 6.995511 TTCCTAACTTATCCAAATCAACCG 57.004 37.500 0.00 0.00 0.00 4.44
127 128 8.349568 ACTTTCCTAACTTATCCAAATCAACC 57.650 34.615 0.00 0.00 0.00 3.77
133 134 9.901172 GGATCTAACTTTCCTAACTTATCCAAA 57.099 33.333 0.00 0.00 31.51 3.28
134 135 8.202137 CGGATCTAACTTTCCTAACTTATCCAA 58.798 37.037 0.00 0.00 31.51 3.53
136 137 7.652507 CACGGATCTAACTTTCCTAACTTATCC 59.347 40.741 0.00 0.00 0.00 2.59
137 138 8.411683 TCACGGATCTAACTTTCCTAACTTATC 58.588 37.037 0.00 0.00 0.00 1.75
138 139 8.302515 TCACGGATCTAACTTTCCTAACTTAT 57.697 34.615 0.00 0.00 0.00 1.73
140 141 6.600882 TCACGGATCTAACTTTCCTAACTT 57.399 37.500 0.00 0.00 0.00 2.66
141 142 6.608002 AGATCACGGATCTAACTTTCCTAACT 59.392 38.462 12.88 0.00 46.15 2.24
142 143 6.807789 AGATCACGGATCTAACTTTCCTAAC 58.192 40.000 12.88 0.00 46.15 2.34
155 156 6.093495 TCCAAACATACAAAAGATCACGGATC 59.907 38.462 0.00 5.94 39.17 3.36
156 157 5.943416 TCCAAACATACAAAAGATCACGGAT 59.057 36.000 0.00 0.00 0.00 4.18
157 158 5.309638 TCCAAACATACAAAAGATCACGGA 58.690 37.500 0.00 0.00 0.00 4.69
159 160 7.113404 CACTTTCCAAACATACAAAAGATCACG 59.887 37.037 0.00 0.00 32.59 4.35
160 161 7.096065 GCACTTTCCAAACATACAAAAGATCAC 60.096 37.037 0.00 0.00 32.59 3.06
162 163 7.115378 CAGCACTTTCCAAACATACAAAAGATC 59.885 37.037 0.00 0.00 32.59 2.75
164 165 6.096141 TCAGCACTTTCCAAACATACAAAAGA 59.904 34.615 0.00 0.00 32.59 2.52
165 166 6.272318 TCAGCACTTTCCAAACATACAAAAG 58.728 36.000 0.00 0.00 34.05 2.27
166 167 6.214191 TCAGCACTTTCCAAACATACAAAA 57.786 33.333 0.00 0.00 0.00 2.44
167 168 5.843673 TCAGCACTTTCCAAACATACAAA 57.156 34.783 0.00 0.00 0.00 2.83
168 169 6.403866 AATCAGCACTTTCCAAACATACAA 57.596 33.333 0.00 0.00 0.00 2.41
169 170 6.403866 AAATCAGCACTTTCCAAACATACA 57.596 33.333 0.00 0.00 0.00 2.29
170 171 7.713764 AAAAATCAGCACTTTCCAAACATAC 57.286 32.000 0.00 0.00 0.00 2.39
221 222 9.717942 CCATGGTTTTTCTTATCAATTGGTTTA 57.282 29.630 2.57 0.00 0.00 2.01
222 223 7.665145 CCCATGGTTTTTCTTATCAATTGGTTT 59.335 33.333 11.73 0.00 0.00 3.27
224 225 6.500049 TCCCATGGTTTTTCTTATCAATTGGT 59.500 34.615 11.73 0.00 0.00 3.67
225 226 6.945218 TCCCATGGTTTTTCTTATCAATTGG 58.055 36.000 11.73 0.00 0.00 3.16
226 227 7.043565 CCTCCCATGGTTTTTCTTATCAATTG 58.956 38.462 11.73 0.00 0.00 2.32
227 228 6.156775 CCCTCCCATGGTTTTTCTTATCAATT 59.843 38.462 11.73 0.00 0.00 2.32
228 229 5.662657 CCCTCCCATGGTTTTTCTTATCAAT 59.337 40.000 11.73 0.00 0.00 2.57
230 231 4.571792 CCCCTCCCATGGTTTTTCTTATCA 60.572 45.833 11.73 0.00 0.00 2.15
231 232 3.960755 CCCCTCCCATGGTTTTTCTTATC 59.039 47.826 11.73 0.00 0.00 1.75
232 233 3.310583 CCCCCTCCCATGGTTTTTCTTAT 60.311 47.826 11.73 0.00 0.00 1.73
233 234 2.043801 CCCCCTCCCATGGTTTTTCTTA 59.956 50.000 11.73 0.00 0.00 2.10
234 235 1.203300 CCCCCTCCCATGGTTTTTCTT 60.203 52.381 11.73 0.00 0.00 2.52
235 236 0.413434 CCCCCTCCCATGGTTTTTCT 59.587 55.000 11.73 0.00 0.00 2.52
236 237 0.116342 ACCCCCTCCCATGGTTTTTC 59.884 55.000 11.73 0.00 0.00 2.29
237 238 0.178906 CACCCCCTCCCATGGTTTTT 60.179 55.000 11.73 0.00 0.00 1.94
238 239 1.469251 CACCCCCTCCCATGGTTTT 59.531 57.895 11.73 0.00 0.00 2.43
239 240 2.557181 CCACCCCCTCCCATGGTTT 61.557 63.158 11.73 0.00 0.00 3.27
240 241 2.946650 CCACCCCCTCCCATGGTT 60.947 66.667 11.73 0.00 0.00 3.67
241 242 4.301662 ACCACCCCCTCCCATGGT 62.302 66.667 11.73 0.00 40.71 3.55
242 243 3.743017 CACCACCCCCTCCCATGG 61.743 72.222 4.14 4.14 38.26 3.66
248 249 4.677151 ACCTCCCACCACCCCCTC 62.677 72.222 0.00 0.00 0.00 4.30
252 253 4.995058 TCCCACCTCCCACCACCC 62.995 72.222 0.00 0.00 0.00 4.61
253 254 3.330720 CTCCCACCTCCCACCACC 61.331 72.222 0.00 0.00 0.00 4.61
254 255 3.330720 CCTCCCACCTCCCACCAC 61.331 72.222 0.00 0.00 0.00 4.16
257 258 1.591768 TATTTCCTCCCACCTCCCAC 58.408 55.000 0.00 0.00 0.00 4.61
260 261 2.682858 CGGTTTATTTCCTCCCACCTCC 60.683 54.545 0.00 0.00 0.00 4.30
261 262 2.640184 CGGTTTATTTCCTCCCACCTC 58.360 52.381 0.00 0.00 0.00 3.85
262 263 1.283905 CCGGTTTATTTCCTCCCACCT 59.716 52.381 0.00 0.00 0.00 4.00
264 265 2.362736 GTCCGGTTTATTTCCTCCCAC 58.637 52.381 0.00 0.00 0.00 4.61
265 266 1.065998 CGTCCGGTTTATTTCCTCCCA 60.066 52.381 0.00 0.00 0.00 4.37
266 267 1.207811 TCGTCCGGTTTATTTCCTCCC 59.792 52.381 0.00 0.00 0.00 4.30
267 268 2.678471 TCGTCCGGTTTATTTCCTCC 57.322 50.000 0.00 0.00 0.00 4.30
268 269 5.361135 TTTTTCGTCCGGTTTATTTCCTC 57.639 39.130 0.00 0.00 0.00 3.71
288 289 2.425668 CCACCACTTTCGTCTGGTTTTT 59.574 45.455 0.00 0.00 38.84 1.94
289 290 2.021457 CCACCACTTTCGTCTGGTTTT 58.979 47.619 0.00 0.00 38.84 2.43
291 292 0.179029 CCCACCACTTTCGTCTGGTT 60.179 55.000 0.00 0.00 38.84 3.67
292 293 1.450211 CCCACCACTTTCGTCTGGT 59.550 57.895 0.00 0.00 41.78 4.00
293 294 1.302511 CCCCACCACTTTCGTCTGG 60.303 63.158 0.00 0.00 0.00 3.86
294 295 0.602905 GTCCCCACCACTTTCGTCTG 60.603 60.000 0.00 0.00 0.00 3.51
295 296 0.763223 AGTCCCCACCACTTTCGTCT 60.763 55.000 0.00 0.00 0.00 4.18
296 297 0.971386 TAGTCCCCACCACTTTCGTC 59.029 55.000 0.00 0.00 0.00 4.20
297 298 1.652947 ATAGTCCCCACCACTTTCGT 58.347 50.000 0.00 0.00 0.00 3.85
299 300 3.713826 TGAATAGTCCCCACCACTTTC 57.286 47.619 0.00 0.00 0.00 2.62
300 301 3.499745 GGTTGAATAGTCCCCACCACTTT 60.500 47.826 0.00 0.00 0.00 2.66
301 302 2.041216 GGTTGAATAGTCCCCACCACTT 59.959 50.000 0.00 0.00 0.00 3.16
302 303 1.633945 GGTTGAATAGTCCCCACCACT 59.366 52.381 0.00 0.00 0.00 4.00
303 304 1.353022 TGGTTGAATAGTCCCCACCAC 59.647 52.381 2.73 0.00 0.00 4.16
304 305 1.748732 TGGTTGAATAGTCCCCACCA 58.251 50.000 2.73 2.73 0.00 4.17
305 306 2.041216 AGTTGGTTGAATAGTCCCCACC 59.959 50.000 0.00 0.00 0.00 4.61
306 307 3.344515 GAGTTGGTTGAATAGTCCCCAC 58.655 50.000 0.00 0.00 0.00 4.61
307 308 2.027561 CGAGTTGGTTGAATAGTCCCCA 60.028 50.000 0.00 0.00 0.00 4.96
308 309 2.027469 ACGAGTTGGTTGAATAGTCCCC 60.027 50.000 0.00 0.00 0.00 4.81
309 310 3.259902 GACGAGTTGGTTGAATAGTCCC 58.740 50.000 0.00 0.00 0.00 4.46
311 312 3.921677 TGGACGAGTTGGTTGAATAGTC 58.078 45.455 0.00 0.00 0.00 2.59
312 313 4.553330 ATGGACGAGTTGGTTGAATAGT 57.447 40.909 0.00 0.00 0.00 2.12
314 315 5.188163 TCCTAATGGACGAGTTGGTTGAATA 59.812 40.000 0.00 0.00 37.46 1.75
315 316 4.019681 TCCTAATGGACGAGTTGGTTGAAT 60.020 41.667 0.00 0.00 37.46 2.57
316 317 3.325425 TCCTAATGGACGAGTTGGTTGAA 59.675 43.478 0.00 0.00 37.46 2.69
317 318 2.901192 TCCTAATGGACGAGTTGGTTGA 59.099 45.455 0.00 0.00 37.46 3.18
318 319 3.262420 CTCCTAATGGACGAGTTGGTTG 58.738 50.000 0.00 0.00 37.46 3.77
319 320 2.904434 ACTCCTAATGGACGAGTTGGTT 59.096 45.455 0.00 0.00 37.46 3.67
320 321 2.537143 ACTCCTAATGGACGAGTTGGT 58.463 47.619 0.00 0.00 37.46 3.67
322 323 4.882427 TCTCTACTCCTAATGGACGAGTTG 59.118 45.833 0.00 0.00 37.93 3.16
323 324 5.113446 TCTCTACTCCTAATGGACGAGTT 57.887 43.478 0.00 0.00 37.93 3.01
324 325 4.774660 TCTCTACTCCTAATGGACGAGT 57.225 45.455 0.00 0.00 40.00 4.18
325 326 6.317642 CCATATCTCTACTCCTAATGGACGAG 59.682 46.154 0.00 0.00 37.46 4.18
326 327 6.181190 CCATATCTCTACTCCTAATGGACGA 58.819 44.000 0.00 0.00 37.46 4.20
329 330 8.651389 CAAAACCATATCTCTACTCCTAATGGA 58.349 37.037 5.50 0.00 40.69 3.41
330 331 8.432805 ACAAAACCATATCTCTACTCCTAATGG 58.567 37.037 0.00 0.00 38.66 3.16
331 332 9.265901 CACAAAACCATATCTCTACTCCTAATG 57.734 37.037 0.00 0.00 0.00 1.90
332 333 8.432805 CCACAAAACCATATCTCTACTCCTAAT 58.567 37.037 0.00 0.00 0.00 1.73
334 335 6.326583 CCCACAAAACCATATCTCTACTCCTA 59.673 42.308 0.00 0.00 0.00 2.94
338 339 6.215636 AGTTCCCACAAAACCATATCTCTACT 59.784 38.462 0.00 0.00 0.00 2.57
339 340 6.415573 AGTTCCCACAAAACCATATCTCTAC 58.584 40.000 0.00 0.00 0.00 2.59
342 343 6.884836 AGTTAGTTCCCACAAAACCATATCTC 59.115 38.462 0.00 0.00 0.00 2.75
343 344 6.790319 AGTTAGTTCCCACAAAACCATATCT 58.210 36.000 0.00 0.00 0.00 1.98
762 3660 6.298361 TGATGGATGAACAGTAATGTATGGG 58.702 40.000 0.00 0.00 0.00 4.00
768 3666 9.673454 CAACAATATGATGGATGAACAGTAATG 57.327 33.333 0.00 0.00 0.00 1.90
849 3748 5.552870 ACCAATAGCCGACAGATAAAGAT 57.447 39.130 0.00 0.00 0.00 2.40
938 6230 8.149973 TCCAAAGTGTTATTCTCACAAGTTAC 57.850 34.615 0.00 0.00 38.16 2.50
940 6232 7.823745 ATCCAAAGTGTTATTCTCACAAGTT 57.176 32.000 0.00 0.00 38.16 2.66
941 6233 7.936847 TGTATCCAAAGTGTTATTCTCACAAGT 59.063 33.333 0.00 0.00 38.16 3.16
942 6234 8.322906 TGTATCCAAAGTGTTATTCTCACAAG 57.677 34.615 0.00 0.00 38.16 3.16
984 6276 7.112452 ACCTCCCTGCAATAATTAACAATTC 57.888 36.000 0.00 0.00 32.38 2.17
1125 6417 4.631813 GGTTTCGATTGTTCTAGCTGTGAT 59.368 41.667 0.00 0.00 0.00 3.06
1197 6489 4.143263 CCAACTTCAAAGATGAAATTGCGC 60.143 41.667 0.00 0.00 46.28 6.09
1392 6688 5.778241 TCGGCTCTTCCAACTATCCATAATA 59.222 40.000 0.00 0.00 34.01 0.98
1523 6820 2.936498 ACCACACGAGAAAACACTGAAG 59.064 45.455 0.00 0.00 0.00 3.02
1561 6858 7.977789 TTCTGATAACTTGAACTATGTTGCA 57.022 32.000 0.00 0.00 0.00 4.08
1661 6958 1.002576 TGATGCAAAAGTCAGCACACG 60.003 47.619 0.00 0.00 44.49 4.49
2033 7335 0.249573 AGCAGCACACCAAAATGCAC 60.250 50.000 0.00 0.00 44.59 4.57
2085 7387 7.877612 TCAGATTCTAGTTTAAGCAACACATCA 59.122 33.333 0.00 0.00 37.93 3.07
2490 8787 9.701098 TCGTATTCTACAAGTCAAAGTGTAAAT 57.299 29.630 0.00 0.00 30.11 1.40
2494 8791 7.431249 TCTTCGTATTCTACAAGTCAAAGTGT 58.569 34.615 0.00 0.00 0.00 3.55
2560 8956 6.601613 ACAACTGTAACTGAAGAAATGGTCAA 59.398 34.615 0.00 0.00 0.00 3.18
2575 8978 2.032426 CCGACCACCAAACAACTGTAAC 59.968 50.000 0.00 0.00 0.00 2.50
2578 8981 1.381165 GCCGACCACCAAACAACTGT 61.381 55.000 0.00 0.00 0.00 3.55
2609 9390 3.586461 CTCTGCAGCTCAGGCGTGT 62.586 63.158 9.47 0.00 43.06 4.49
2631 9412 2.202570 CGTAAGACCCGAGTGGCG 60.203 66.667 0.00 0.00 43.02 5.69
2985 11025 3.432749 GGCTCTGATGGCTGAATGTAAGA 60.433 47.826 0.00 0.00 0.00 2.10
3045 11087 4.039366 GGGGATGCCGAGAAGGTATATATC 59.961 50.000 0.00 0.00 45.76 1.63
3250 11379 1.359168 AAAAGGCGGAAGGGAGTACT 58.641 50.000 0.00 0.00 0.00 2.73
3251 11380 1.810755 CAAAAAGGCGGAAGGGAGTAC 59.189 52.381 0.00 0.00 0.00 2.73
3252 11381 1.422402 ACAAAAAGGCGGAAGGGAGTA 59.578 47.619 0.00 0.00 0.00 2.59
3253 11382 0.185175 ACAAAAAGGCGGAAGGGAGT 59.815 50.000 0.00 0.00 0.00 3.85
3254 11383 1.269723 GAACAAAAAGGCGGAAGGGAG 59.730 52.381 0.00 0.00 0.00 4.30
3255 11384 1.324383 GAACAAAAAGGCGGAAGGGA 58.676 50.000 0.00 0.00 0.00 4.20
3256 11385 1.036707 TGAACAAAAAGGCGGAAGGG 58.963 50.000 0.00 0.00 0.00 3.95
3257 11386 3.385193 AATGAACAAAAAGGCGGAAGG 57.615 42.857 0.00 0.00 0.00 3.46
3258 11387 4.808364 TCAAAATGAACAAAAAGGCGGAAG 59.192 37.500 0.00 0.00 0.00 3.46
3259 11388 4.759782 TCAAAATGAACAAAAAGGCGGAA 58.240 34.783 0.00 0.00 0.00 4.30
3260 11389 4.392921 TCAAAATGAACAAAAAGGCGGA 57.607 36.364 0.00 0.00 0.00 5.54
3261 11390 4.749099 TCATCAAAATGAACAAAAAGGCGG 59.251 37.500 0.00 0.00 38.97 6.13
3262 11391 5.233902 TGTCATCAAAATGAACAAAAAGGCG 59.766 36.000 0.00 0.00 43.42 5.52
3263 11392 6.601741 TGTCATCAAAATGAACAAAAAGGC 57.398 33.333 0.00 0.00 43.42 4.35
3264 11393 7.127686 GCTTGTCATCAAAATGAACAAAAAGG 58.872 34.615 0.87 0.00 43.42 3.11
3265 11394 7.686519 TGCTTGTCATCAAAATGAACAAAAAG 58.313 30.769 0.87 0.00 43.42 2.27
3266 11395 7.606858 TGCTTGTCATCAAAATGAACAAAAA 57.393 28.000 0.87 0.00 43.42 1.94
3267 11396 7.789273 ATGCTTGTCATCAAAATGAACAAAA 57.211 28.000 0.87 0.00 43.42 2.44
3268 11397 7.789273 AATGCTTGTCATCAAAATGAACAAA 57.211 28.000 0.87 0.00 43.42 2.83
3269 11398 7.041916 GGAAATGCTTGTCATCAAAATGAACAA 60.042 33.333 0.00 0.00 43.42 2.83
3270 11399 6.424509 GGAAATGCTTGTCATCAAAATGAACA 59.575 34.615 0.00 0.00 43.42 3.18
3271 11400 6.400303 CGGAAATGCTTGTCATCAAAATGAAC 60.400 38.462 0.00 0.00 43.42 3.18
3272 11401 5.634439 CGGAAATGCTTGTCATCAAAATGAA 59.366 36.000 0.00 0.00 43.42 2.57
3273 11402 5.162794 CGGAAATGCTTGTCATCAAAATGA 58.837 37.500 0.00 0.00 39.63 2.57
3274 11403 4.327898 CCGGAAATGCTTGTCATCAAAATG 59.672 41.667 0.00 0.00 33.40 2.32
3275 11404 4.220382 TCCGGAAATGCTTGTCATCAAAAT 59.780 37.500 0.00 0.00 33.40 1.82
3276 11405 3.571828 TCCGGAAATGCTTGTCATCAAAA 59.428 39.130 0.00 0.00 33.40 2.44
3277 11406 3.057596 GTCCGGAAATGCTTGTCATCAAA 60.058 43.478 5.23 0.00 33.40 2.69
3278 11407 2.487762 GTCCGGAAATGCTTGTCATCAA 59.512 45.455 5.23 0.00 33.40 2.57
3279 11408 2.083774 GTCCGGAAATGCTTGTCATCA 58.916 47.619 5.23 0.00 33.40 3.07
3280 11409 1.062587 CGTCCGGAAATGCTTGTCATC 59.937 52.381 5.23 0.00 33.40 2.92
3281 11410 1.086696 CGTCCGGAAATGCTTGTCAT 58.913 50.000 5.23 0.00 36.87 3.06
3282 11411 0.953471 CCGTCCGGAAATGCTTGTCA 60.953 55.000 5.23 0.00 37.50 3.58
3283 11412 0.672401 TCCGTCCGGAAATGCTTGTC 60.672 55.000 5.23 0.00 42.05 3.18
3284 11413 0.673644 CTCCGTCCGGAAATGCTTGT 60.674 55.000 5.23 0.00 44.66 3.16
3285 11414 1.369091 CCTCCGTCCGGAAATGCTTG 61.369 60.000 5.23 0.00 44.66 4.01
3286 11415 1.078426 CCTCCGTCCGGAAATGCTT 60.078 57.895 5.23 0.00 44.66 3.91
3287 11416 2.584608 CCTCCGTCCGGAAATGCT 59.415 61.111 5.23 0.00 44.66 3.79
3288 11417 2.513897 CCCTCCGTCCGGAAATGC 60.514 66.667 5.23 0.00 44.66 3.56
3289 11418 1.144057 CTCCCTCCGTCCGGAAATG 59.856 63.158 5.23 0.00 44.66 2.32
3290 11419 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3291 11420 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
3292 11421 0.682209 CTTACTCCCTCCGTCCGGAA 60.682 60.000 5.23 0.00 44.66 4.30
3293 11422 1.077212 CTTACTCCCTCCGTCCGGA 60.077 63.158 0.00 0.00 42.90 5.14
3294 11423 0.107017 TACTTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
3295 11424 1.307097 CTACTTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
3296 11425 2.433662 ACTACTTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3297 11426 2.877786 GCTACTACTTACTCCCTCCGTC 59.122 54.545 0.00 0.00 0.00 4.79
3298 11427 2.744494 CGCTACTACTTACTCCCTCCGT 60.744 54.545 0.00 0.00 0.00 4.69
3299 11428 1.872313 CGCTACTACTTACTCCCTCCG 59.128 57.143 0.00 0.00 0.00 4.63
3300 11429 1.608109 GCGCTACTACTTACTCCCTCC 59.392 57.143 0.00 0.00 0.00 4.30
3301 11430 2.291190 CTGCGCTACTACTTACTCCCTC 59.709 54.545 9.73 0.00 0.00 4.30
3302 11431 2.092538 TCTGCGCTACTACTTACTCCCT 60.093 50.000 9.73 0.00 0.00 4.20
3303 11432 2.295885 TCTGCGCTACTACTTACTCCC 58.704 52.381 9.73 0.00 0.00 4.30
3304 11433 4.036498 TGAATCTGCGCTACTACTTACTCC 59.964 45.833 9.73 0.00 0.00 3.85
3305 11434 5.171147 TGAATCTGCGCTACTACTTACTC 57.829 43.478 9.73 0.00 0.00 2.59
3306 11435 4.641094 ACTGAATCTGCGCTACTACTTACT 59.359 41.667 9.73 0.00 0.00 2.24
3307 11436 4.922719 ACTGAATCTGCGCTACTACTTAC 58.077 43.478 9.73 0.00 0.00 2.34
3308 11437 5.578005 AACTGAATCTGCGCTACTACTTA 57.422 39.130 9.73 0.00 0.00 2.24
3309 11438 4.457834 AACTGAATCTGCGCTACTACTT 57.542 40.909 9.73 0.00 0.00 2.24
3310 11439 4.457834 AAACTGAATCTGCGCTACTACT 57.542 40.909 9.73 0.00 0.00 2.57
3311 11440 4.625742 TGAAAACTGAATCTGCGCTACTAC 59.374 41.667 9.73 0.00 0.00 2.73
3312 11441 4.625742 GTGAAAACTGAATCTGCGCTACTA 59.374 41.667 9.73 0.00 0.00 1.82
3437 13827 1.115467 AGTGCCTCTTCGGAGTATGG 58.885 55.000 0.00 0.00 40.29 2.74
3438 13828 2.544685 CAAGTGCCTCTTCGGAGTATG 58.455 52.381 0.00 0.00 40.29 2.39
3701 15108 2.289444 TGCAGACTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3702 15109 1.695242 TGCAGACTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3703 15110 2.178912 TGCAGACTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
3705 15112 8.507524 AACTTATATGCAGACTAAAAAGGACC 57.492 34.615 0.00 0.00 0.00 4.46
3713 15120 9.719355 TTCAGACAAAACTTATATGCAGACTAA 57.281 29.630 0.00 0.00 0.00 2.24
3714 15121 9.371136 CTTCAGACAAAACTTATATGCAGACTA 57.629 33.333 0.00 0.00 0.00 2.59
3715 15122 7.880195 ACTTCAGACAAAACTTATATGCAGACT 59.120 33.333 0.00 0.00 0.00 3.24
3716 15123 8.034058 ACTTCAGACAAAACTTATATGCAGAC 57.966 34.615 0.00 0.00 0.00 3.51
3717 15124 7.877612 TGACTTCAGACAAAACTTATATGCAGA 59.122 33.333 0.00 0.00 0.00 4.26
3718 15125 8.032952 TGACTTCAGACAAAACTTATATGCAG 57.967 34.615 0.00 0.00 0.00 4.41
3719 15126 7.977789 TGACTTCAGACAAAACTTATATGCA 57.022 32.000 0.00 0.00 0.00 3.96
3720 15127 9.334693 CTTTGACTTCAGACAAAACTTATATGC 57.665 33.333 6.05 0.00 38.68 3.14
3725 15132 9.832445 AGATACTTTGACTTCAGACAAAACTTA 57.168 29.630 6.05 0.34 38.68 2.24
3728 15135 8.371770 AGAGATACTTTGACTTCAGACAAAAC 57.628 34.615 6.05 0.51 38.68 2.43
3730 15137 8.861086 AGTAGAGATACTTTGACTTCAGACAAA 58.139 33.333 4.72 4.72 37.36 2.83
3732 15139 8.410673 AAGTAGAGATACTTTGACTTCAGACA 57.589 34.615 0.00 0.00 36.98 3.41
3849 16287 8.164070 GGTTTCATACCTATGGGACTATCAAAT 58.836 37.037 0.25 0.00 44.10 2.32
3853 16291 5.546499 TGGGTTTCATACCTATGGGACTATC 59.454 44.000 0.25 0.00 46.86 2.08
3856 16294 3.743132 TGGGTTTCATACCTATGGGACT 58.257 45.455 0.25 0.00 46.86 3.85
3859 16297 5.454062 TCAAATGGGTTTCATACCTATGGG 58.546 41.667 0.00 0.00 46.51 4.00
3860 16298 5.010012 GCTCAAATGGGTTTCATACCTATGG 59.990 44.000 0.00 0.00 46.51 2.74
3861 16299 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
3863 16301 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
3864 16302 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
3867 16305 4.214986 TCTCGCTCAAATGGGTTTCATA 57.785 40.909 0.00 0.00 34.44 2.15
3868 16306 3.071874 TCTCGCTCAAATGGGTTTCAT 57.928 42.857 0.00 0.00 37.79 2.57
3869 16307 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
3870 16308 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
3871 16309 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
3872 16310 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
3873 16311 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
3874 16312 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
3875 16313 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
3878 16316 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
3882 16320 4.202588 ACCCATCCTAGTACTATTCTCGCT 60.203 45.833 2.33 0.00 0.00 4.93
3883 16321 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
3884 16322 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
3885 16323 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
3886 16324 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
3887 16325 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
3888 16326 5.420215 AGGTCACCCATCCTAGTACTATT 57.580 43.478 2.33 0.00 31.66 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.