Multiple sequence alignment - TraesCS7A01G415600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G415600 chr7A 100.000 5355 0 0 1 5355 607551719 607557073 0.000000e+00 9889.0
1 TraesCS7A01G415600 chr7B 96.980 4172 94 17 812 4972 564180619 564184769 0.000000e+00 6977.0
2 TraesCS7A01G415600 chr7B 100.000 271 0 0 5084 5354 137463397 137463127 8.010000e-138 501.0
3 TraesCS7A01G415600 chr7D 96.727 4125 80 19 864 4972 527725947 527730032 0.000000e+00 6818.0
4 TraesCS7A01G415600 chr7D 87.130 575 71 3 7 579 527725056 527725629 0.000000e+00 649.0
5 TraesCS7A01G415600 chr7D 82.162 185 29 3 623 806 277558663 277558844 7.180000e-34 156.0
6 TraesCS7A01G415600 chr7D 95.455 44 2 0 805 848 527725906 527725949 2.680000e-08 71.3
7 TraesCS7A01G415600 chr2A 99.638 276 1 0 5079 5354 678161078 678160803 6.190000e-139 505.0
8 TraesCS7A01G415600 chr3A 98.929 280 3 0 5075 5354 319968438 319968717 8.010000e-138 501.0
9 TraesCS7A01G415600 chr3A 98.577 281 2 2 5076 5354 275852448 275852168 3.730000e-136 496.0
10 TraesCS7A01G415600 chr3A 94.017 117 7 0 4971 5087 627272236 627272120 1.530000e-40 178.0
11 TraesCS7A01G415600 chr1A 99.634 273 1 0 5082 5354 487492104 487491832 2.880000e-137 499.0
12 TraesCS7A01G415600 chr1A 85.859 198 26 2 614 810 262941238 262941434 5.430000e-50 209.0
13 TraesCS7A01G415600 chr1A 94.872 117 6 0 4971 5087 456324508 456324624 3.290000e-42 183.0
14 TraesCS7A01G415600 chr1A 94.118 119 7 0 4969 5087 480593958 480593840 1.180000e-41 182.0
15 TraesCS7A01G415600 chr4B 99.275 276 1 1 5079 5354 609476415 609476141 1.040000e-136 497.0
16 TraesCS7A01G415600 chr4B 94.068 118 7 0 4970 5087 232098795 232098678 4.260000e-41 180.0
17 TraesCS7A01G415600 chr5B 98.246 285 1 4 5073 5354 692693444 692693161 3.730000e-136 496.0
18 TraesCS7A01G415600 chr5B 93.388 121 8 0 4967 5087 609842456 609842576 4.260000e-41 180.0
19 TraesCS7A01G415600 chr3B 98.582 282 1 3 5073 5354 353864592 353864870 3.730000e-136 496.0
20 TraesCS7A01G415600 chr4A 98.571 280 2 2 5075 5354 450790069 450790346 1.340000e-135 494.0
21 TraesCS7A01G415600 chr4A 94.068 118 7 0 4970 5087 467683852 467683969 4.260000e-41 180.0
22 TraesCS7A01G415600 chr4A 86.875 160 20 1 623 782 36476585 36476743 1.530000e-40 178.0
23 TraesCS7A01G415600 chr4A 85.542 166 24 0 643 808 603533145 603533310 1.980000e-39 174.0
24 TraesCS7A01G415600 chr4A 84.706 170 26 0 642 811 610127930 610127761 2.560000e-38 171.0
25 TraesCS7A01G415600 chr5A 90.058 171 17 0 642 812 510886576 510886406 6.980000e-54 222.0
26 TraesCS7A01G415600 chr5A 94.783 115 6 0 4971 5085 38147906 38147792 4.260000e-41 180.0
27 TraesCS7A01G415600 chr5A 85.714 168 24 0 642 809 3323503 3323336 1.530000e-40 178.0
28 TraesCS7A01G415600 chrUn 89.820 167 17 0 642 808 74790821 74790987 1.170000e-51 215.0
29 TraesCS7A01G415600 chrUn 86.420 81 11 0 2047 2127 162951 163031 7.390000e-14 89.8
30 TraesCS7A01G415600 chr4D 94.915 118 6 0 4970 5087 233079445 233079328 9.160000e-43 185.0
31 TraesCS7A01G415600 chr6B 85.965 171 23 1 642 811 169103726 169103896 1.180000e-41 182.0
32 TraesCS7A01G415600 chr6B 86.207 145 19 1 638 782 312853413 312853556 7.180000e-34 156.0
33 TraesCS7A01G415600 chr2D 93.388 121 5 3 4968 5087 74146850 74146968 5.510000e-40 176.0
34 TraesCS7A01G415600 chr5D 79.394 165 33 1 643 806 477957231 477957395 1.220000e-21 115.0
35 TraesCS7A01G415600 chr1D 86.420 81 11 0 2047 2127 18762685 18762765 7.390000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G415600 chr7A 607551719 607557073 5354 False 9889.000000 9889 100.000 1 5355 1 chr7A.!!$F1 5354
1 TraesCS7A01G415600 chr7B 564180619 564184769 4150 False 6977.000000 6977 96.980 812 4972 1 chr7B.!!$F1 4160
2 TraesCS7A01G415600 chr7D 527725056 527730032 4976 False 2512.766667 6818 93.104 7 4972 3 chr7D.!!$F2 4965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 1030 0.036875 CACCTCTCCAAACACCTCCC 59.963 60.000 0.0 0.0 0.00 4.30 F
792 1031 0.401395 ACCTCTCCAAACACCTCCCA 60.401 55.000 0.0 0.0 0.00 4.37 F
1983 2233 0.257039 GTCATGCTGGGGTTGATCCT 59.743 55.000 0.0 0.0 36.25 3.24 F
2989 3243 1.208535 ACCCAAGTGTCAGTTCGTTCA 59.791 47.619 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 2098 0.791983 CGCAGCGCAAGACAGAATTG 60.792 55.0 11.47 0.0 43.02 2.32 R
2260 2514 5.068329 TCCACAACAATCACATACTGCAAAA 59.932 36.0 0.00 0.0 0.00 2.44 R
3599 3857 1.633852 GCAGAGCTCCTGTGCTTTCG 61.634 60.0 16.83 0.0 45.47 3.46 R
4977 5236 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.0 9.46 0.0 43.15 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.370849 TGGGACCTGTTTGAAGTAGTCC 59.629 50.000 0.00 0.00 42.48 3.85
33 34 3.072622 GGGACCTGTTTGAAGTAGTCCTT 59.927 47.826 6.92 0.00 42.74 3.36
34 35 4.285260 GGGACCTGTTTGAAGTAGTCCTTA 59.715 45.833 6.92 0.00 42.74 2.69
37 38 7.266400 GGACCTGTTTGAAGTAGTCCTTATAG 58.734 42.308 0.00 0.00 40.51 1.31
39 40 8.431910 ACCTGTTTGAAGTAGTCCTTATAGAA 57.568 34.615 0.00 0.00 32.03 2.10
48 49 7.700022 AGTAGTCCTTATAGAAAAGTCGTGT 57.300 36.000 0.00 0.00 0.00 4.49
49 50 7.536855 AGTAGTCCTTATAGAAAAGTCGTGTG 58.463 38.462 0.00 0.00 0.00 3.82
60 61 3.125607 TCGTGTGTCAGCGACCTT 58.874 55.556 6.30 0.00 31.76 3.50
67 68 1.400846 GTGTCAGCGACCTTATCTCGA 59.599 52.381 6.30 0.00 32.65 4.04
75 76 2.426024 CGACCTTATCTCGAGGGAACAA 59.574 50.000 13.56 0.00 38.65 2.83
81 82 2.588464 TCTCGAGGGAACAACTCTCT 57.412 50.000 13.56 0.00 43.48 3.10
82 83 3.715638 TCTCGAGGGAACAACTCTCTA 57.284 47.619 13.56 0.00 43.48 2.43
83 84 3.345414 TCTCGAGGGAACAACTCTCTAC 58.655 50.000 13.56 0.00 43.48 2.59
84 85 3.009253 TCTCGAGGGAACAACTCTCTACT 59.991 47.826 13.56 0.00 43.48 2.57
89 90 4.494591 AGGGAACAACTCTCTACTCCTTT 58.505 43.478 0.00 0.00 30.72 3.11
124 125 4.101114 TCTAAACATGCTCCACCTCCTTA 58.899 43.478 0.00 0.00 0.00 2.69
125 126 2.789409 AACATGCTCCACCTCCTTAC 57.211 50.000 0.00 0.00 0.00 2.34
171 173 4.585364 GCTCATCATCAACGTCATTTCAG 58.415 43.478 0.00 0.00 0.00 3.02
231 233 9.289782 ACTCTTTATATATGAATTCACCAAGCC 57.710 33.333 11.07 0.00 0.00 4.35
232 234 9.512588 CTCTTTATATATGAATTCACCAAGCCT 57.487 33.333 11.07 0.00 0.00 4.58
241 243 2.550830 TCACCAAGCCTCTTGTTCTC 57.449 50.000 5.92 0.00 0.00 2.87
246 248 2.030451 CCAAGCCTCTTGTTCTCAAAGC 60.030 50.000 5.92 0.00 32.87 3.51
258 260 8.588915 CTTGTTCTCAAAGCCATCATCCGATG 62.589 46.154 1.55 1.55 39.77 3.84
326 328 4.150627 CACTCGAACATTTCATCGAACACT 59.849 41.667 0.00 0.00 46.26 3.55
333 335 6.037786 ACATTTCATCGAACACTTAGAGGA 57.962 37.500 0.00 0.00 0.00 3.71
338 340 3.049708 TCGAACACTTAGAGGACGAGA 57.950 47.619 0.00 0.00 0.00 4.04
353 355 0.668535 CGAGATGTATGTCCGGAGCA 59.331 55.000 3.06 6.82 0.00 4.26
364 366 2.240279 GTCCGGAGCAGTAGGATGTAT 58.760 52.381 3.06 0.00 36.34 2.29
367 369 1.200252 CGGAGCAGTAGGATGTATCGG 59.800 57.143 0.00 0.00 0.00 4.18
378 380 1.471829 ATGTATCGGAGCGGCATCCA 61.472 55.000 15.51 6.31 39.53 3.41
397 399 4.293648 TGGCGGCGACCATATCCG 62.294 66.667 11.74 0.00 45.46 4.18
400 402 3.612681 CGGCGACCATATCCGGGT 61.613 66.667 0.00 0.00 42.61 5.28
401 403 2.826702 GGCGACCATATCCGGGTT 59.173 61.111 0.00 0.00 39.19 4.11
409 411 2.047061 CCATATCCGGGTTGAGAAGGA 58.953 52.381 0.00 0.00 37.17 3.36
411 413 2.241281 TATCCGGGTTGAGAAGGACA 57.759 50.000 0.00 0.00 35.36 4.02
428 430 2.933834 AGTCGGGAGGGGTTTGGG 60.934 66.667 0.00 0.00 0.00 4.12
463 465 2.201732 CGATGTGGGTTATGGAAGACG 58.798 52.381 0.00 0.00 0.00 4.18
464 466 2.561569 GATGTGGGTTATGGAAGACGG 58.438 52.381 0.00 0.00 0.00 4.79
465 467 1.354101 TGTGGGTTATGGAAGACGGT 58.646 50.000 0.00 0.00 0.00 4.83
475 477 3.316573 GAAGACGGTGGAGCCAGGG 62.317 68.421 0.00 0.00 36.97 4.45
485 487 2.121506 AGCCAGGGAAAGGGGTGA 60.122 61.111 0.00 0.00 32.74 4.02
486 488 2.035783 GCCAGGGAAAGGGGTGAC 59.964 66.667 0.00 0.00 0.00 3.67
494 496 0.531311 GAAAGGGGTGACACGAACGT 60.531 55.000 0.00 0.00 40.46 3.99
509 511 5.550981 CACGAACGTGGAAAAAGATATGAG 58.449 41.667 17.83 0.00 42.00 2.90
511 513 5.577164 ACGAACGTGGAAAAAGATATGAGAG 59.423 40.000 0.00 0.00 0.00 3.20
523 525 3.839490 AGATATGAGAGGAAGATGGCAGG 59.161 47.826 0.00 0.00 0.00 4.85
528 530 1.292242 AGAGGAAGATGGCAGGTAGGA 59.708 52.381 0.00 0.00 0.00 2.94
529 531 2.119495 GAGGAAGATGGCAGGTAGGAA 58.881 52.381 0.00 0.00 0.00 3.36
541 544 3.136626 GCAGGTAGGAATAGGTTGTGGAT 59.863 47.826 0.00 0.00 0.00 3.41
550 553 7.872138 AGGAATAGGTTGTGGATGATTTAGAA 58.128 34.615 0.00 0.00 0.00 2.10
552 555 8.624776 GGAATAGGTTGTGGATGATTTAGAAAG 58.375 37.037 0.00 0.00 0.00 2.62
555 558 7.454260 AGGTTGTGGATGATTTAGAAAGAAC 57.546 36.000 0.00 0.00 0.00 3.01
562 565 8.825745 GTGGATGATTTAGAAAGAACTGAGATC 58.174 37.037 0.00 0.00 0.00 2.75
566 569 6.813649 TGATTTAGAAAGAACTGAGATCCGTG 59.186 38.462 0.00 0.00 0.00 4.94
569 572 3.574396 AGAAAGAACTGAGATCCGTGTGA 59.426 43.478 0.00 0.00 0.00 3.58
571 574 2.520069 AGAACTGAGATCCGTGTGACT 58.480 47.619 0.00 0.00 0.00 3.41
572 575 2.230025 AGAACTGAGATCCGTGTGACTG 59.770 50.000 0.00 0.00 0.00 3.51
579 582 1.880894 TCCGTGTGACTGATCGGAC 59.119 57.895 9.00 2.21 45.49 4.79
580 583 0.608308 TCCGTGTGACTGATCGGACT 60.608 55.000 9.00 0.00 45.49 3.85
581 584 0.456824 CCGTGTGACTGATCGGACTG 60.457 60.000 9.00 0.00 44.86 3.51
582 585 0.241213 CGTGTGACTGATCGGACTGT 59.759 55.000 9.00 0.00 0.00 3.55
583 586 1.335964 CGTGTGACTGATCGGACTGTT 60.336 52.381 9.00 0.00 0.00 3.16
584 587 2.061773 GTGTGACTGATCGGACTGTTG 58.938 52.381 9.00 0.00 0.00 3.33
585 588 1.000843 TGTGACTGATCGGACTGTTGG 59.999 52.381 9.00 0.00 0.00 3.77
586 589 0.037326 TGACTGATCGGACTGTTGGC 60.037 55.000 9.00 0.00 0.00 4.52
587 590 0.247736 GACTGATCGGACTGTTGGCT 59.752 55.000 9.00 0.00 0.00 4.75
595 834 0.315251 GGACTGTTGGCTTTTGAGGC 59.685 55.000 0.00 0.00 0.00 4.70
598 837 0.319297 CTGTTGGCTTTTGAGGCAGC 60.319 55.000 9.32 9.32 45.06 5.25
600 839 2.563798 TTGGCTTTTGAGGCAGCGG 61.564 57.895 2.92 0.00 45.06 5.52
602 841 3.752339 GCTTTTGAGGCAGCGGGG 61.752 66.667 0.00 0.00 0.00 5.73
623 862 1.088340 CCGGTTGCAGATGCTCTCAG 61.088 60.000 6.35 0.00 42.66 3.35
624 863 1.088340 CGGTTGCAGATGCTCTCAGG 61.088 60.000 6.35 0.00 42.66 3.86
625 864 1.375098 GGTTGCAGATGCTCTCAGGC 61.375 60.000 6.35 0.00 42.66 4.85
626 865 1.077930 TTGCAGATGCTCTCAGGCC 60.078 57.895 6.35 0.00 42.66 5.19
627 866 1.559965 TTGCAGATGCTCTCAGGCCT 61.560 55.000 0.00 0.00 42.66 5.19
628 867 1.224039 GCAGATGCTCTCAGGCCTT 59.776 57.895 0.00 0.00 38.21 4.35
629 868 1.096386 GCAGATGCTCTCAGGCCTTG 61.096 60.000 0.00 0.00 38.21 3.61
630 869 0.252479 CAGATGCTCTCAGGCCTTGT 59.748 55.000 0.00 0.00 0.00 3.16
631 870 1.483827 CAGATGCTCTCAGGCCTTGTA 59.516 52.381 0.00 0.00 0.00 2.41
632 871 1.484240 AGATGCTCTCAGGCCTTGTAC 59.516 52.381 0.00 0.00 0.00 2.90
633 872 1.208052 GATGCTCTCAGGCCTTGTACA 59.792 52.381 0.00 0.00 0.00 2.90
634 873 1.055849 TGCTCTCAGGCCTTGTACAA 58.944 50.000 0.00 8.28 0.00 2.41
635 874 1.630369 TGCTCTCAGGCCTTGTACAAT 59.370 47.619 9.13 0.00 0.00 2.71
636 875 2.837591 TGCTCTCAGGCCTTGTACAATA 59.162 45.455 9.13 0.00 0.00 1.90
637 876 3.263170 TGCTCTCAGGCCTTGTACAATAA 59.737 43.478 9.13 0.00 0.00 1.40
638 877 3.873952 GCTCTCAGGCCTTGTACAATAAG 59.126 47.826 9.13 2.52 0.00 1.73
639 878 4.383118 GCTCTCAGGCCTTGTACAATAAGA 60.383 45.833 9.13 5.41 0.00 2.10
640 879 5.686124 GCTCTCAGGCCTTGTACAATAAGAT 60.686 44.000 9.13 0.00 0.00 2.40
641 880 5.674525 TCTCAGGCCTTGTACAATAAGATG 58.325 41.667 9.13 5.35 0.00 2.90
642 881 5.189736 TCTCAGGCCTTGTACAATAAGATGT 59.810 40.000 9.13 0.00 37.32 3.06
643 882 5.185454 TCAGGCCTTGTACAATAAGATGTG 58.815 41.667 9.13 1.52 34.75 3.21
644 883 3.947834 AGGCCTTGTACAATAAGATGTGC 59.052 43.478 9.13 2.65 36.58 4.57
645 884 3.947834 GGCCTTGTACAATAAGATGTGCT 59.052 43.478 9.13 0.00 36.92 4.40
646 885 4.399303 GGCCTTGTACAATAAGATGTGCTT 59.601 41.667 9.13 0.00 40.68 3.91
647 886 5.588648 GGCCTTGTACAATAAGATGTGCTTA 59.411 40.000 9.13 0.00 42.92 3.09
648 887 6.238484 GGCCTTGTACAATAAGATGTGCTTAG 60.238 42.308 9.13 0.00 42.08 2.18
649 888 6.538742 GCCTTGTACAATAAGATGTGCTTAGA 59.461 38.462 9.13 0.00 42.08 2.10
650 889 7.065803 GCCTTGTACAATAAGATGTGCTTAGAA 59.934 37.037 9.13 0.00 42.08 2.10
651 890 8.946085 CCTTGTACAATAAGATGTGCTTAGAAA 58.054 33.333 9.13 0.00 42.08 2.52
662 901 7.707104 AGATGTGCTTAGAAAAATAAATCGGG 58.293 34.615 0.00 0.00 0.00 5.14
663 902 5.646606 TGTGCTTAGAAAAATAAATCGGGC 58.353 37.500 0.00 0.00 0.00 6.13
664 903 5.417580 TGTGCTTAGAAAAATAAATCGGGCT 59.582 36.000 0.00 0.00 0.00 5.19
665 904 6.071616 TGTGCTTAGAAAAATAAATCGGGCTT 60.072 34.615 0.00 0.00 0.00 4.35
666 905 6.811665 GTGCTTAGAAAAATAAATCGGGCTTT 59.188 34.615 0.00 0.00 0.00 3.51
667 906 7.009265 GTGCTTAGAAAAATAAATCGGGCTTTC 59.991 37.037 0.00 0.00 0.00 2.62
668 907 6.475727 GCTTAGAAAAATAAATCGGGCTTTCC 59.524 38.462 0.00 0.00 0.00 3.13
669 908 7.630728 GCTTAGAAAAATAAATCGGGCTTTCCT 60.631 37.037 0.00 0.00 0.00 3.36
670 909 6.605471 AGAAAAATAAATCGGGCTTTCCTT 57.395 33.333 0.00 0.00 0.00 3.36
671 910 7.712204 AGAAAAATAAATCGGGCTTTCCTTA 57.288 32.000 0.00 0.00 0.00 2.69
672 911 8.129496 AGAAAAATAAATCGGGCTTTCCTTAA 57.871 30.769 0.00 0.00 0.00 1.85
673 912 8.251026 AGAAAAATAAATCGGGCTTTCCTTAAG 58.749 33.333 0.00 0.00 36.90 1.85
697 936 6.801539 CACCGATGCTTATTTATACATGGT 57.198 37.500 0.00 0.00 0.00 3.55
698 937 7.899178 CACCGATGCTTATTTATACATGGTA 57.101 36.000 0.00 0.00 0.00 3.25
699 938 7.963981 CACCGATGCTTATTTATACATGGTAG 58.036 38.462 0.00 0.00 0.00 3.18
700 939 7.817478 CACCGATGCTTATTTATACATGGTAGA 59.183 37.037 0.00 0.00 0.00 2.59
701 940 8.540388 ACCGATGCTTATTTATACATGGTAGAT 58.460 33.333 0.00 0.00 0.00 1.98
702 941 8.820933 CCGATGCTTATTTATACATGGTAGATG 58.179 37.037 0.00 0.00 0.00 2.90
703 942 8.331022 CGATGCTTATTTATACATGGTAGATGC 58.669 37.037 0.00 0.00 0.00 3.91
704 943 9.388506 GATGCTTATTTATACATGGTAGATGCT 57.611 33.333 0.00 0.00 0.00 3.79
705 944 9.745018 ATGCTTATTTATACATGGTAGATGCTT 57.255 29.630 0.00 0.00 0.00 3.91
786 1025 4.911514 TTTTAAGCACCTCTCCAAACAC 57.088 40.909 0.00 0.00 0.00 3.32
787 1026 2.561478 TAAGCACCTCTCCAAACACC 57.439 50.000 0.00 0.00 0.00 4.16
788 1027 0.846693 AAGCACCTCTCCAAACACCT 59.153 50.000 0.00 0.00 0.00 4.00
789 1028 0.398318 AGCACCTCTCCAAACACCTC 59.602 55.000 0.00 0.00 0.00 3.85
790 1029 0.606673 GCACCTCTCCAAACACCTCC 60.607 60.000 0.00 0.00 0.00 4.30
791 1030 0.036875 CACCTCTCCAAACACCTCCC 59.963 60.000 0.00 0.00 0.00 4.30
792 1031 0.401395 ACCTCTCCAAACACCTCCCA 60.401 55.000 0.00 0.00 0.00 4.37
793 1032 0.995024 CCTCTCCAAACACCTCCCAT 59.005 55.000 0.00 0.00 0.00 4.00
794 1033 1.355720 CCTCTCCAAACACCTCCCATT 59.644 52.381 0.00 0.00 0.00 3.16
795 1034 2.576191 CCTCTCCAAACACCTCCCATTA 59.424 50.000 0.00 0.00 0.00 1.90
796 1035 3.203040 CCTCTCCAAACACCTCCCATTAT 59.797 47.826 0.00 0.00 0.00 1.28
797 1036 4.412199 CCTCTCCAAACACCTCCCATTATA 59.588 45.833 0.00 0.00 0.00 0.98
798 1037 5.367945 TCTCCAAACACCTCCCATTATAC 57.632 43.478 0.00 0.00 0.00 1.47
799 1038 4.785914 TCTCCAAACACCTCCCATTATACA 59.214 41.667 0.00 0.00 0.00 2.29
800 1039 5.251932 TCTCCAAACACCTCCCATTATACAA 59.748 40.000 0.00 0.00 0.00 2.41
801 1040 5.505780 TCCAAACACCTCCCATTATACAAG 58.494 41.667 0.00 0.00 0.00 3.16
802 1041 4.644685 CCAAACACCTCCCATTATACAAGG 59.355 45.833 0.00 0.00 0.00 3.61
803 1042 3.577805 ACACCTCCCATTATACAAGGC 57.422 47.619 0.00 0.00 0.00 4.35
804 1043 2.174854 ACACCTCCCATTATACAAGGCC 59.825 50.000 0.00 0.00 0.00 5.19
805 1044 2.443255 CACCTCCCATTATACAAGGCCT 59.557 50.000 0.00 0.00 0.00 5.19
806 1045 3.117512 CACCTCCCATTATACAAGGCCTT 60.118 47.826 13.78 13.78 0.00 4.35
807 1046 4.104102 CACCTCCCATTATACAAGGCCTTA 59.896 45.833 20.00 3.48 0.00 2.69
808 1047 4.104261 ACCTCCCATTATACAAGGCCTTAC 59.896 45.833 20.00 0.00 0.00 2.34
809 1048 4.104102 CCTCCCATTATACAAGGCCTTACA 59.896 45.833 20.00 9.35 0.00 2.41
810 1049 5.398581 CCTCCCATTATACAAGGCCTTACAA 60.399 44.000 20.00 10.01 0.00 2.41
875 1114 2.429236 CGCTGCGCTATCCTACCG 60.429 66.667 9.88 0.00 0.00 4.02
965 1204 1.435515 CTCCTCTCCTCGCTTTCCG 59.564 63.158 0.00 0.00 38.61 4.30
975 1214 2.652095 CGCTTTCCGTCCTACCCCA 61.652 63.158 0.00 0.00 0.00 4.96
1054 1293 1.135527 CGTGCCTCCGGTGAGTTATTA 59.864 52.381 4.76 0.00 36.86 0.98
1060 1300 4.638865 GCCTCCGGTGAGTTATTACATTTT 59.361 41.667 4.76 0.00 36.86 1.82
1061 1301 5.220796 GCCTCCGGTGAGTTATTACATTTTC 60.221 44.000 4.76 0.00 36.86 2.29
1062 1302 5.296035 CCTCCGGTGAGTTATTACATTTTCC 59.704 44.000 4.76 0.00 36.86 3.13
1063 1303 5.187687 TCCGGTGAGTTATTACATTTTCCC 58.812 41.667 0.00 0.00 0.00 3.97
1064 1304 4.034742 CCGGTGAGTTATTACATTTTCCCG 59.965 45.833 0.00 0.00 0.00 5.14
1065 1305 4.034742 CGGTGAGTTATTACATTTTCCCGG 59.965 45.833 0.00 0.00 0.00 5.73
1091 1331 1.745087 AGCATGTATTTTGCCCAGTCG 59.255 47.619 0.00 0.00 41.06 4.18
1200 1443 3.832490 GAGCACCAAACCCTAGGATTTTT 59.168 43.478 11.48 3.72 0.00 1.94
1201 1444 3.578282 AGCACCAAACCCTAGGATTTTTG 59.422 43.478 11.48 15.42 0.00 2.44
1202 1445 3.323691 GCACCAAACCCTAGGATTTTTGT 59.676 43.478 11.48 8.37 0.00 2.83
1247 1490 1.596603 GACTAGAGGAGGCTCGGTAC 58.403 60.000 8.69 0.00 0.00 3.34
1476 1722 4.260456 CGAAGAAACAGTTGCTCGGTTTAA 60.260 41.667 0.00 0.00 42.54 1.52
1485 1731 4.120589 GTTGCTCGGTTTAAGAGGGATAG 58.879 47.826 0.00 0.00 36.31 2.08
1500 1746 3.640967 AGGGATAGCTGCACAAAAACAAA 59.359 39.130 1.02 0.00 0.00 2.83
1562 1808 4.041723 GCTTTGTGCGTAAAGTTTGATGT 58.958 39.130 12.34 0.00 39.33 3.06
1563 1809 4.502645 GCTTTGTGCGTAAAGTTTGATGTT 59.497 37.500 12.34 0.00 39.33 2.71
1567 1813 5.270083 TGTGCGTAAAGTTTGATGTTGAAG 58.730 37.500 0.00 0.00 0.00 3.02
1609 1855 8.872845 CATTTCCTTGTTTATTTCTTACCATGC 58.127 33.333 0.00 0.00 0.00 4.06
1719 1969 5.643777 GCTACACAACAGGACACAAGATTAT 59.356 40.000 0.00 0.00 0.00 1.28
1816 2066 5.475564 GGTTAATGCAGTGGGAAACTCTTTA 59.524 40.000 0.00 0.00 36.83 1.85
1848 2098 1.679032 GGTACCAACAGTCAGCCCATC 60.679 57.143 7.15 0.00 0.00 3.51
1921 2171 1.732809 GCTTAAGGAGAACCAGTTCGC 59.267 52.381 4.29 5.79 43.97 4.70
1946 2196 7.044052 GCTTCACTTGGCAAATAATAATCGAAC 60.044 37.037 0.00 0.00 0.00 3.95
1983 2233 0.257039 GTCATGCTGGGGTTGATCCT 59.743 55.000 0.00 0.00 36.25 3.24
2192 2442 3.410631 TCGCCAAGGAAAAGTATGTCA 57.589 42.857 0.00 0.00 0.00 3.58
2215 2465 9.180678 GTCATGTTACCAAAGTTATGTTTTCTG 57.819 33.333 0.00 0.00 0.00 3.02
2260 2514 7.129457 TGCTCTGTAATCCTAACTGATTCAT 57.871 36.000 0.00 0.00 36.41 2.57
2529 2783 8.595362 TTTCTAGTCAGAATTCTGGTCTATGA 57.405 34.615 30.33 23.62 43.91 2.15
2989 3243 1.208535 ACCCAAGTGTCAGTTCGTTCA 59.791 47.619 0.00 0.00 0.00 3.18
3063 3317 5.116180 CGGATGGCAACTAGAGAACAATTA 58.884 41.667 0.00 0.00 37.61 1.40
3428 3685 8.196771 TGAACAAAACTAAATTCAGCAAGACAT 58.803 29.630 0.00 0.00 0.00 3.06
4352 4610 2.472695 TAGTGGCAGCGAACAAGATT 57.527 45.000 0.00 0.00 0.00 2.40
4563 4821 4.335400 CCTTGGTTTGTAAGGTTTGCAT 57.665 40.909 0.00 0.00 39.85 3.96
4632 4890 2.363306 AATTTGGTCAGTGTCCTGCA 57.637 45.000 7.93 0.00 38.66 4.41
4695 4954 2.245159 TTGTGAGCCAGAGTGTTGAG 57.755 50.000 0.00 0.00 0.00 3.02
4831 5090 2.354704 CGGCACCTCCTGTTAAATCTCA 60.355 50.000 0.00 0.00 0.00 3.27
4837 5096 4.018050 ACCTCCTGTTAAATCTCAAGGCAT 60.018 41.667 0.00 0.00 0.00 4.40
4904 5163 5.709966 CCAAAATTTGACCCTTGCTACTAC 58.290 41.667 7.37 0.00 0.00 2.73
4950 5209 7.541162 TGAGCAATCCACTATTGAAAGAAATG 58.459 34.615 2.01 0.00 46.81 2.32
4973 5232 7.379059 TGTCACATTCATGGGAGATTATACT 57.621 36.000 0.00 0.00 41.63 2.12
4974 5233 7.445121 TGTCACATTCATGGGAGATTATACTC 58.555 38.462 0.00 0.00 41.63 2.59
4984 5243 3.090790 GAGATTATACTCCCTCCGGTCC 58.909 54.545 0.00 0.00 0.00 4.46
4985 5244 2.723010 AGATTATACTCCCTCCGGTCCT 59.277 50.000 0.00 0.00 0.00 3.85
4986 5245 3.142407 AGATTATACTCCCTCCGGTCCTT 59.858 47.826 0.00 0.00 0.00 3.36
4987 5246 3.409804 TTATACTCCCTCCGGTCCTTT 57.590 47.619 0.00 0.00 0.00 3.11
4988 5247 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
4989 5248 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
4990 5249 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
4991 5250 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
4992 5251 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
4993 5252 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
4994 5253 1.065636 CCCTCCGGTCCTTTTTACTCC 60.066 57.143 0.00 0.00 0.00 3.85
4995 5254 1.405121 CCTCCGGTCCTTTTTACTCCG 60.405 57.143 0.00 0.00 40.72 4.63
4996 5255 0.037046 TCCGGTCCTTTTTACTCCGC 60.037 55.000 0.00 0.00 39.87 5.54
4997 5256 1.356527 CCGGTCCTTTTTACTCCGCG 61.357 60.000 0.00 0.00 39.87 6.46
4998 5257 0.668401 CGGTCCTTTTTACTCCGCGT 60.668 55.000 4.92 0.00 35.01 6.01
4999 5258 1.402720 CGGTCCTTTTTACTCCGCGTA 60.403 52.381 4.92 0.00 35.01 4.42
5000 5259 2.736400 CGGTCCTTTTTACTCCGCGTAT 60.736 50.000 4.92 0.00 35.01 3.06
5001 5260 3.264947 GGTCCTTTTTACTCCGCGTATT 58.735 45.455 4.92 0.00 0.00 1.89
5002 5261 4.432712 GGTCCTTTTTACTCCGCGTATTA 58.567 43.478 4.92 0.00 0.00 0.98
5003 5262 4.505556 GGTCCTTTTTACTCCGCGTATTAG 59.494 45.833 4.92 0.00 0.00 1.73
5004 5263 5.343249 GTCCTTTTTACTCCGCGTATTAGA 58.657 41.667 4.92 0.00 0.00 2.10
5005 5264 5.981915 GTCCTTTTTACTCCGCGTATTAGAT 59.018 40.000 4.92 0.00 0.00 1.98
5006 5265 6.478016 GTCCTTTTTACTCCGCGTATTAGATT 59.522 38.462 4.92 0.00 0.00 2.40
5007 5266 7.010830 GTCCTTTTTACTCCGCGTATTAGATTT 59.989 37.037 4.92 0.00 0.00 2.17
5008 5267 7.223387 TCCTTTTTACTCCGCGTATTAGATTTC 59.777 37.037 4.92 0.00 0.00 2.17
5009 5268 7.224167 CCTTTTTACTCCGCGTATTAGATTTCT 59.776 37.037 4.92 0.00 0.00 2.52
5010 5269 7.459394 TTTTACTCCGCGTATTAGATTTCTG 57.541 36.000 4.92 0.00 0.00 3.02
5011 5270 4.650754 ACTCCGCGTATTAGATTTCTGT 57.349 40.909 4.92 0.00 0.00 3.41
5012 5271 4.608951 ACTCCGCGTATTAGATTTCTGTC 58.391 43.478 4.92 0.00 0.00 3.51
5013 5272 4.097437 ACTCCGCGTATTAGATTTCTGTCA 59.903 41.667 4.92 0.00 0.00 3.58
5014 5273 5.001237 TCCGCGTATTAGATTTCTGTCAA 57.999 39.130 4.92 0.00 0.00 3.18
5015 5274 5.041287 TCCGCGTATTAGATTTCTGTCAAG 58.959 41.667 4.92 0.00 0.00 3.02
5016 5275 4.804139 CCGCGTATTAGATTTCTGTCAAGT 59.196 41.667 4.92 0.00 0.00 3.16
5017 5276 5.051641 CCGCGTATTAGATTTCTGTCAAGTC 60.052 44.000 4.92 0.00 0.00 3.01
5018 5277 5.515270 CGCGTATTAGATTTCTGTCAAGTCA 59.485 40.000 0.00 0.00 0.00 3.41
5019 5278 6.034577 CGCGTATTAGATTTCTGTCAAGTCAA 59.965 38.462 0.00 0.00 0.00 3.18
5020 5279 7.411480 CGCGTATTAGATTTCTGTCAAGTCAAA 60.411 37.037 0.00 0.00 0.00 2.69
5021 5280 7.688578 GCGTATTAGATTTCTGTCAAGTCAAAC 59.311 37.037 0.00 0.00 0.00 2.93
5022 5281 8.926710 CGTATTAGATTTCTGTCAAGTCAAACT 58.073 33.333 0.00 0.00 0.00 2.66
5027 5286 8.506168 AGATTTCTGTCAAGTCAAACTTTACA 57.494 30.769 6.66 6.66 39.27 2.41
5028 5287 8.956426 AGATTTCTGTCAAGTCAAACTTTACAA 58.044 29.630 7.89 0.00 40.51 2.41
5029 5288 9.567848 GATTTCTGTCAAGTCAAACTTTACAAA 57.432 29.630 7.89 2.54 40.51 2.83
5030 5289 8.964420 TTTCTGTCAAGTCAAACTTTACAAAG 57.036 30.769 7.89 0.13 40.51 2.77
5108 5367 7.459795 ACTTACTTACTTACTTACGAAGCCT 57.540 36.000 0.00 0.00 0.00 4.58
5109 5368 7.890515 ACTTACTTACTTACTTACGAAGCCTT 58.109 34.615 0.00 0.00 0.00 4.35
5110 5369 8.363390 ACTTACTTACTTACTTACGAAGCCTTT 58.637 33.333 0.00 0.00 0.00 3.11
5111 5370 9.201127 CTTACTTACTTACTTACGAAGCCTTTT 57.799 33.333 0.00 0.00 0.00 2.27
5114 5373 9.363763 ACTTACTTACTTACGAAGCCTTTTATC 57.636 33.333 0.00 0.00 0.00 1.75
5115 5374 8.707938 TTACTTACTTACGAAGCCTTTTATCC 57.292 34.615 0.00 0.00 0.00 2.59
5116 5375 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
5117 5376 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
5118 5377 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
5119 5378 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
5120 5379 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
5121 5380 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
5122 5381 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
5123 5382 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
5124 5383 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
5125 5384 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
5126 5385 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
5135 5394 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
5136 5395 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
5137 5396 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
5138 5397 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
5139 5398 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
5140 5399 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
5141 5400 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
5142 5401 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
5143 5402 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
5144 5403 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
5145 5404 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
5146 5405 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
5147 5406 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
5148 5407 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
5149 5408 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
5150 5409 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
5151 5410 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
5152 5411 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
5160 5419 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
5161 5420 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
5162 5421 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
5163 5422 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
5164 5423 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
5165 5424 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
5166 5425 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
5167 5426 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
5168 5427 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
5169 5428 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
5170 5429 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
5171 5430 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
5172 5431 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
5173 5432 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
5176 5435 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
5177 5436 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
5178 5437 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
5179 5438 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
5180 5439 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
5181 5440 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
5182 5441 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
5183 5442 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
5184 5443 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
5185 5444 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
5186 5445 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
5187 5446 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
5188 5447 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
5189 5448 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
5190 5449 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
5191 5450 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
5192 5451 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
5193 5452 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
5194 5453 5.447757 GTCACCCATCCTAGTACTACTCTT 58.552 45.833 0.00 0.00 0.00 2.85
5195 5454 5.299782 GTCACCCATCCTAGTACTACTCTTG 59.700 48.000 0.00 0.00 0.00 3.02
5196 5455 4.038162 CACCCATCCTAGTACTACTCTTGC 59.962 50.000 0.00 0.00 0.00 4.01
5197 5456 3.574826 CCCATCCTAGTACTACTCTTGCC 59.425 52.174 0.00 0.00 0.00 4.52
5198 5457 3.574826 CCATCCTAGTACTACTCTTGCCC 59.425 52.174 0.00 0.00 0.00 5.36
5199 5458 4.215908 CATCCTAGTACTACTCTTGCCCA 58.784 47.826 0.00 0.00 0.00 5.36
5200 5459 4.326600 TCCTAGTACTACTCTTGCCCAA 57.673 45.455 0.00 0.00 0.00 4.12
5201 5460 4.680407 TCCTAGTACTACTCTTGCCCAAA 58.320 43.478 0.00 0.00 0.00 3.28
5202 5461 5.278061 TCCTAGTACTACTCTTGCCCAAAT 58.722 41.667 0.00 0.00 0.00 2.32
5203 5462 5.128827 TCCTAGTACTACTCTTGCCCAAATG 59.871 44.000 0.00 0.00 0.00 2.32
5204 5463 4.222124 AGTACTACTCTTGCCCAAATGG 57.778 45.455 0.00 0.00 37.09 3.16
5225 5484 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
5226 5485 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
5227 5486 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
5228 5487 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
5229 5488 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
5230 5489 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
5231 5490 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
5232 5491 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
5233 5492 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
5234 5493 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
5235 5494 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
5236 5495 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
5237 5496 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
5238 5497 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
5239 5498 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
5240 5499 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
5241 5500 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
5242 5501 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
5243 5502 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
5244 5503 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
5245 5504 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
5246 5505 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
5247 5506 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
5248 5507 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
5258 5517 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
5259 5518 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
5260 5519 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
5261 5520 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
5262 5521 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
5263 5522 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
5264 5523 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
5265 5524 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
5266 5525 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
5267 5526 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
5268 5527 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
5269 5528 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
5270 5529 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
5271 5530 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
5272 5531 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
5273 5532 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
5274 5533 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
5275 5534 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
5276 5535 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
5277 5536 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
5278 5537 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
5279 5538 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
5280 5539 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
5281 5540 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
5282 5541 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
5290 5549 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
5291 5550 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
5292 5551 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
5293 5552 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
5294 5553 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
5295 5554 6.553615 GAAACCCTTTCACGAGGACTTCCT 62.554 50.000 0.00 0.00 43.41 3.36
5296 5555 7.251005 GAAACCCTTTCACGAGGACTTCCTA 62.251 48.000 0.00 0.00 42.02 2.94
5297 5556 8.945486 GAAACCCTTTCACGAGGACTTCCTAG 62.945 50.000 0.00 0.27 42.02 3.02
5307 5566 1.487300 GACTTCCTAGGAGGTCACCC 58.513 60.000 36.64 18.70 46.32 4.61
5308 5567 0.790993 ACTTCCTAGGAGGTCACCCA 59.209 55.000 20.38 0.00 36.53 4.51
5309 5568 1.366435 ACTTCCTAGGAGGTCACCCAT 59.634 52.381 20.38 0.00 36.53 4.00
5310 5569 2.043227 CTTCCTAGGAGGTCACCCATC 58.957 57.143 12.26 0.00 36.53 3.51
5311 5570 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.00 36.53 3.51
5312 5571 0.266152 CCTAGGAGGTCACCCATCCT 59.734 60.000 9.58 9.58 39.90 3.24
5313 5572 1.503784 CCTAGGAGGTCACCCATCCTA 59.496 57.143 10.74 10.74 38.53 2.94
5314 5573 2.491825 CCTAGGAGGTCACCCATCCTAG 60.492 59.091 24.06 24.06 46.05 3.02
5315 5574 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
5316 5575 2.224077 AGGAGGTCACCCATCCTAGTA 58.776 52.381 2.60 0.00 36.91 1.82
5317 5576 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
5318 5577 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
5319 5578 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
5320 5579 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
5321 5580 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
5322 5581 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
5323 5582 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
5324 5583 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
5325 5584 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
5326 5585 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
5327 5586 4.202588 ACCCATCCTAGTACTATTCTCGCT 60.203 45.833 2.33 0.00 0.00 4.93
5328 5587 4.396790 CCCATCCTAGTACTATTCTCGCTC 59.603 50.000 2.33 0.00 0.00 5.03
5329 5588 5.004448 CCATCCTAGTACTATTCTCGCTCA 58.996 45.833 2.33 0.00 0.00 4.26
5330 5589 5.473846 CCATCCTAGTACTATTCTCGCTCAA 59.526 44.000 2.33 0.00 0.00 3.02
5331 5590 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
5332 5591 7.309499 CCATCCTAGTACTATTCTCGCTCAAAT 60.309 40.741 2.33 0.00 0.00 2.32
5333 5592 6.971602 TCCTAGTACTATTCTCGCTCAAATG 58.028 40.000 2.33 0.00 0.00 2.32
5334 5593 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
5335 5594 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
5336 5595 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
5337 5596 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
5338 5597 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
5339 5598 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
5340 5599 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
5341 5600 3.071874 TCTCGCTCAAATGGGTTTCAT 57.928 42.857 0.00 0.00 37.79 2.57
5342 5601 4.214986 TCTCGCTCAAATGGGTTTCATA 57.785 40.909 0.00 0.00 34.44 2.15
5343 5602 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
5344 5603 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
5345 5604 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
5346 5605 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
5348 5607 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
5349 5608 5.010012 GCTCAAATGGGTTTCATACCTATGG 59.990 44.000 0.00 0.00 46.51 2.74
5350 5609 5.454062 TCAAATGGGTTTCATACCTATGGG 58.546 41.667 0.00 0.00 46.51 4.00
5351 5610 5.194740 TCAAATGGGTTTCATACCTATGGGA 59.805 40.000 0.25 0.00 46.51 4.37
5352 5611 4.724279 ATGGGTTTCATACCTATGGGAC 57.276 45.455 0.25 0.00 45.57 4.46
5353 5612 3.743132 TGGGTTTCATACCTATGGGACT 58.257 45.455 0.25 0.00 46.86 3.85
5354 5613 4.898268 TGGGTTTCATACCTATGGGACTA 58.102 43.478 0.25 0.00 46.86 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.009631 TCAAACAGGTCCCAACATATCTTG 58.990 41.667 0.00 0.00 0.00 3.02
1 2 5.255397 TCAAACAGGTCCCAACATATCTT 57.745 39.130 0.00 0.00 0.00 2.40
2 3 4.927267 TCAAACAGGTCCCAACATATCT 57.073 40.909 0.00 0.00 0.00 1.98
3 4 5.010282 ACTTCAAACAGGTCCCAACATATC 58.990 41.667 0.00 0.00 0.00 1.63
4 5 4.998051 ACTTCAAACAGGTCCCAACATAT 58.002 39.130 0.00 0.00 0.00 1.78
5 6 4.447138 ACTTCAAACAGGTCCCAACATA 57.553 40.909 0.00 0.00 0.00 2.29
31 32 5.220043 CGCTGACACACGACTTTTCTATAAG 60.220 44.000 0.00 0.00 0.00 1.73
33 34 4.083164 TCGCTGACACACGACTTTTCTATA 60.083 41.667 0.00 0.00 32.45 1.31
34 35 2.987149 CGCTGACACACGACTTTTCTAT 59.013 45.455 0.00 0.00 0.00 1.98
37 38 1.205657 TCGCTGACACACGACTTTTC 58.794 50.000 0.00 0.00 32.45 2.29
44 45 1.135373 AGATAAGGTCGCTGACACACG 60.135 52.381 10.14 0.00 33.68 4.49
48 49 1.671328 CTCGAGATAAGGTCGCTGACA 59.329 52.381 6.58 0.00 37.35 3.58
49 50 1.002251 CCTCGAGATAAGGTCGCTGAC 60.002 57.143 15.71 0.79 37.35 3.51
59 60 4.601084 AGAGAGTTGTTCCCTCGAGATAA 58.399 43.478 15.71 4.55 34.08 1.75
60 61 4.237976 AGAGAGTTGTTCCCTCGAGATA 57.762 45.455 15.71 0.00 34.08 1.98
67 68 3.837399 AGGAGTAGAGAGTTGTTCCCT 57.163 47.619 0.00 0.00 0.00 4.20
75 76 8.616799 AAGGATTCAATAAAGGAGTAGAGAGT 57.383 34.615 0.00 0.00 0.00 3.24
89 90 8.686334 GGAGCATGTTTAGAAAAGGATTCAATA 58.314 33.333 0.00 0.00 0.00 1.90
143 144 2.604914 GACGTTGATGATGAGCGTTCAT 59.395 45.455 15.12 15.12 46.61 2.57
144 145 1.992667 GACGTTGATGATGAGCGTTCA 59.007 47.619 3.86 3.86 35.86 3.18
145 146 1.992667 TGACGTTGATGATGAGCGTTC 59.007 47.619 0.00 0.00 35.86 3.95
146 147 2.078849 TGACGTTGATGATGAGCGTT 57.921 45.000 0.00 0.00 35.86 4.84
148 149 3.062504 TGAAATGACGTTGATGATGAGCG 59.937 43.478 0.00 0.00 0.00 5.03
162 164 4.410492 ACAACGAAGATGCTGAAATGAC 57.590 40.909 0.00 0.00 31.73 3.06
212 214 7.293073 ACAAGAGGCTTGGTGAATTCATATAT 58.707 34.615 12.12 0.00 0.00 0.86
231 233 4.096081 GGATGATGGCTTTGAGAACAAGAG 59.904 45.833 0.00 0.00 37.32 2.85
232 234 4.012374 GGATGATGGCTTTGAGAACAAGA 58.988 43.478 0.00 0.00 37.32 3.02
258 260 6.329496 TCATTTTAGGCAAAACGATGGATTC 58.671 36.000 0.00 0.00 36.49 2.52
302 304 4.055360 TGTTCGATGAAATGTTCGAGTGT 58.945 39.130 0.00 0.00 44.32 3.55
306 308 6.153756 TCTAAGTGTTCGATGAAATGTTCGA 58.846 36.000 0.00 0.00 42.19 3.71
307 309 6.389622 TCTAAGTGTTCGATGAAATGTTCG 57.610 37.500 0.00 0.00 36.72 3.95
317 319 3.607741 TCTCGTCCTCTAAGTGTTCGAT 58.392 45.455 0.00 0.00 0.00 3.59
326 328 3.813724 CGGACATACATCTCGTCCTCTAA 59.186 47.826 6.27 0.00 45.83 2.10
333 335 0.669077 GCTCCGGACATACATCTCGT 59.331 55.000 0.00 0.00 0.00 4.18
338 340 1.964223 CCTACTGCTCCGGACATACAT 59.036 52.381 0.00 0.00 0.00 2.29
353 355 1.535833 CCGCTCCGATACATCCTACT 58.464 55.000 0.00 0.00 0.00 2.57
364 366 2.203056 CATTGGATGCCGCTCCGA 60.203 61.111 0.00 0.00 38.21 4.55
367 369 3.957535 CGCCATTGGATGCCGCTC 61.958 66.667 6.95 0.00 0.00 5.03
378 380 1.302511 GGATATGGTCGCCGCCATT 60.303 57.895 16.12 6.64 46.33 3.16
393 395 0.905357 CTGTCCTTCTCAACCCGGAT 59.095 55.000 0.73 0.00 0.00 4.18
397 399 0.037232 CCGACTGTCCTTCTCAACCC 60.037 60.000 1.55 0.00 0.00 4.11
400 402 1.257743 CTCCCGACTGTCCTTCTCAA 58.742 55.000 1.55 0.00 0.00 3.02
401 403 0.612174 CCTCCCGACTGTCCTTCTCA 60.612 60.000 1.55 0.00 0.00 3.27
409 411 2.526046 CCAAACCCCTCCCGACTGT 61.526 63.158 0.00 0.00 0.00 3.55
411 413 2.933834 CCCAAACCCCTCCCGACT 60.934 66.667 0.00 0.00 0.00 4.18
463 465 2.356667 CCTTTCCCTGGCTCCACC 59.643 66.667 0.00 0.00 39.84 4.61
464 466 2.356667 CCCTTTCCCTGGCTCCAC 59.643 66.667 0.00 0.00 0.00 4.02
465 467 2.941025 CCCCTTTCCCTGGCTCCA 60.941 66.667 0.00 0.00 0.00 3.86
475 477 0.531311 ACGTTCGTGTCACCCCTTTC 60.531 55.000 0.00 0.00 0.00 2.62
485 487 4.992319 TCATATCTTTTTCCACGTTCGTGT 59.008 37.500 20.93 5.57 34.59 4.49
486 488 5.347635 TCTCATATCTTTTTCCACGTTCGTG 59.652 40.000 16.87 16.87 36.03 4.35
494 496 7.285566 CCATCTTCCTCTCATATCTTTTTCCA 58.714 38.462 0.00 0.00 0.00 3.53
499 501 5.221884 CCTGCCATCTTCCTCTCATATCTTT 60.222 44.000 0.00 0.00 0.00 2.52
500 502 4.286549 CCTGCCATCTTCCTCTCATATCTT 59.713 45.833 0.00 0.00 0.00 2.40
505 507 1.890552 ACCTGCCATCTTCCTCTCAT 58.109 50.000 0.00 0.00 0.00 2.90
509 511 1.794714 TCCTACCTGCCATCTTCCTC 58.205 55.000 0.00 0.00 0.00 3.71
511 513 3.008485 CCTATTCCTACCTGCCATCTTCC 59.992 52.174 0.00 0.00 0.00 3.46
523 525 8.429641 TCTAAATCATCCACAACCTATTCCTAC 58.570 37.037 0.00 0.00 0.00 3.18
528 530 9.753674 TTCTTTCTAAATCATCCACAACCTATT 57.246 29.630 0.00 0.00 0.00 1.73
529 531 9.178758 GTTCTTTCTAAATCATCCACAACCTAT 57.821 33.333 0.00 0.00 0.00 2.57
541 544 6.813649 CACGGATCTCAGTTCTTTCTAAATCA 59.186 38.462 0.00 0.00 0.00 2.57
550 553 2.894126 AGTCACACGGATCTCAGTTCTT 59.106 45.455 0.00 0.00 0.00 2.52
552 555 2.229062 TCAGTCACACGGATCTCAGTTC 59.771 50.000 0.00 0.00 0.00 3.01
555 558 2.540565 CGATCAGTCACACGGATCTCAG 60.541 54.545 12.86 0.00 44.18 3.35
562 565 0.456824 CAGTCCGATCAGTCACACGG 60.457 60.000 0.00 0.00 45.61 4.94
566 569 1.714794 CCAACAGTCCGATCAGTCAC 58.285 55.000 0.00 0.00 0.00 3.67
569 572 0.687354 AAGCCAACAGTCCGATCAGT 59.313 50.000 0.00 0.00 0.00 3.41
571 574 1.879380 CAAAAGCCAACAGTCCGATCA 59.121 47.619 0.00 0.00 0.00 2.92
572 575 2.151202 TCAAAAGCCAACAGTCCGATC 58.849 47.619 0.00 0.00 0.00 3.69
579 582 0.319297 GCTGCCTCAAAAGCCAACAG 60.319 55.000 0.00 0.00 33.12 3.16
580 583 1.741525 GCTGCCTCAAAAGCCAACA 59.258 52.632 0.00 0.00 33.12 3.33
581 584 1.372128 CGCTGCCTCAAAAGCCAAC 60.372 57.895 0.00 0.00 35.98 3.77
582 585 2.563798 CCGCTGCCTCAAAAGCCAA 61.564 57.895 0.00 0.00 35.98 4.52
583 586 2.985282 CCGCTGCCTCAAAAGCCA 60.985 61.111 0.00 0.00 35.98 4.75
584 587 3.752339 CCCGCTGCCTCAAAAGCC 61.752 66.667 0.00 0.00 35.98 4.35
585 588 3.752339 CCCCGCTGCCTCAAAAGC 61.752 66.667 0.00 0.00 36.03 3.51
586 589 2.282462 ACCCCGCTGCCTCAAAAG 60.282 61.111 0.00 0.00 0.00 2.27
587 590 2.282180 GACCCCGCTGCCTCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
600 839 3.134127 GCATCTGCAACCGGACCC 61.134 66.667 9.46 0.00 41.59 4.46
602 841 3.490890 GAGCATCTGCAACCGGAC 58.509 61.111 9.46 0.00 45.16 4.79
623 862 3.947834 AGCACATCTTATTGTACAAGGCC 59.052 43.478 14.65 0.00 0.00 5.19
624 863 5.567138 AAGCACATCTTATTGTACAAGGC 57.433 39.130 14.65 7.18 32.10 4.35
625 864 8.492673 TTCTAAGCACATCTTATTGTACAAGG 57.507 34.615 14.65 7.01 36.72 3.61
636 875 8.190784 CCCGATTTATTTTTCTAAGCACATCTT 58.809 33.333 0.00 0.00 38.79 2.40
637 876 7.682021 GCCCGATTTATTTTTCTAAGCACATCT 60.682 37.037 0.00 0.00 0.00 2.90
638 877 6.417930 GCCCGATTTATTTTTCTAAGCACATC 59.582 38.462 0.00 0.00 0.00 3.06
639 878 6.096846 AGCCCGATTTATTTTTCTAAGCACAT 59.903 34.615 0.00 0.00 0.00 3.21
640 879 5.417580 AGCCCGATTTATTTTTCTAAGCACA 59.582 36.000 0.00 0.00 0.00 4.57
641 880 5.891451 AGCCCGATTTATTTTTCTAAGCAC 58.109 37.500 0.00 0.00 0.00 4.40
642 881 6.524101 AAGCCCGATTTATTTTTCTAAGCA 57.476 33.333 0.00 0.00 0.00 3.91
643 882 6.475727 GGAAAGCCCGATTTATTTTTCTAAGC 59.524 38.462 0.00 0.00 0.00 3.09
644 883 7.772166 AGGAAAGCCCGATTTATTTTTCTAAG 58.228 34.615 0.00 0.00 40.87 2.18
645 884 7.712204 AGGAAAGCCCGATTTATTTTTCTAA 57.288 32.000 0.00 0.00 40.87 2.10
646 885 7.712204 AAGGAAAGCCCGATTTATTTTTCTA 57.288 32.000 0.00 0.00 40.87 2.10
647 886 6.605471 AAGGAAAGCCCGATTTATTTTTCT 57.395 33.333 0.00 0.00 40.87 2.52
648 887 8.407457 CTTAAGGAAAGCCCGATTTATTTTTC 57.593 34.615 0.00 0.00 40.87 2.29
674 913 6.801539 ACCATGTATAAATAAGCATCGGTG 57.198 37.500 0.00 0.00 0.00 4.94
675 914 7.903145 TCTACCATGTATAAATAAGCATCGGT 58.097 34.615 0.00 0.00 32.19 4.69
676 915 8.820933 CATCTACCATGTATAAATAAGCATCGG 58.179 37.037 0.00 0.00 0.00 4.18
677 916 8.331022 GCATCTACCATGTATAAATAAGCATCG 58.669 37.037 0.00 0.00 0.00 3.84
678 917 9.388506 AGCATCTACCATGTATAAATAAGCATC 57.611 33.333 0.00 0.00 0.00 3.91
679 918 9.745018 AAGCATCTACCATGTATAAATAAGCAT 57.255 29.630 0.00 0.00 0.00 3.79
764 1003 4.098807 GGTGTTTGGAGAGGTGCTTAAAAA 59.901 41.667 0.00 0.00 0.00 1.94
765 1004 3.634910 GGTGTTTGGAGAGGTGCTTAAAA 59.365 43.478 0.00 0.00 0.00 1.52
766 1005 3.117663 AGGTGTTTGGAGAGGTGCTTAAA 60.118 43.478 0.00 0.00 0.00 1.52
767 1006 2.441750 AGGTGTTTGGAGAGGTGCTTAA 59.558 45.455 0.00 0.00 0.00 1.85
768 1007 2.038557 GAGGTGTTTGGAGAGGTGCTTA 59.961 50.000 0.00 0.00 0.00 3.09
769 1008 0.846693 AGGTGTTTGGAGAGGTGCTT 59.153 50.000 0.00 0.00 0.00 3.91
770 1009 0.398318 GAGGTGTTTGGAGAGGTGCT 59.602 55.000 0.00 0.00 0.00 4.40
771 1010 0.606673 GGAGGTGTTTGGAGAGGTGC 60.607 60.000 0.00 0.00 0.00 5.01
772 1011 0.036875 GGGAGGTGTTTGGAGAGGTG 59.963 60.000 0.00 0.00 0.00 4.00
773 1012 0.401395 TGGGAGGTGTTTGGAGAGGT 60.401 55.000 0.00 0.00 0.00 3.85
774 1013 0.995024 ATGGGAGGTGTTTGGAGAGG 59.005 55.000 0.00 0.00 0.00 3.69
775 1014 2.887151 AATGGGAGGTGTTTGGAGAG 57.113 50.000 0.00 0.00 0.00 3.20
776 1015 4.785914 TGTATAATGGGAGGTGTTTGGAGA 59.214 41.667 0.00 0.00 0.00 3.71
777 1016 5.110814 TGTATAATGGGAGGTGTTTGGAG 57.889 43.478 0.00 0.00 0.00 3.86
778 1017 5.505780 CTTGTATAATGGGAGGTGTTTGGA 58.494 41.667 0.00 0.00 0.00 3.53
779 1018 4.644685 CCTTGTATAATGGGAGGTGTTTGG 59.355 45.833 0.00 0.00 0.00 3.28
780 1019 4.097892 GCCTTGTATAATGGGAGGTGTTTG 59.902 45.833 0.00 0.00 0.00 2.93
781 1020 4.278310 GCCTTGTATAATGGGAGGTGTTT 58.722 43.478 0.00 0.00 0.00 2.83
782 1021 3.372675 GGCCTTGTATAATGGGAGGTGTT 60.373 47.826 0.00 0.00 0.00 3.32
783 1022 2.174854 GGCCTTGTATAATGGGAGGTGT 59.825 50.000 0.00 0.00 0.00 4.16
784 1023 2.443255 AGGCCTTGTATAATGGGAGGTG 59.557 50.000 0.00 0.00 0.00 4.00
785 1024 2.789219 AGGCCTTGTATAATGGGAGGT 58.211 47.619 0.00 0.00 0.00 3.85
786 1025 3.884037 AAGGCCTTGTATAATGGGAGG 57.116 47.619 19.73 0.00 0.00 4.30
787 1026 5.304686 TGTAAGGCCTTGTATAATGGGAG 57.695 43.478 28.77 0.00 0.00 4.30
788 1027 5.690865 CTTGTAAGGCCTTGTATAATGGGA 58.309 41.667 28.77 0.00 0.00 4.37
789 1028 4.278419 GCTTGTAAGGCCTTGTATAATGGG 59.722 45.833 28.77 8.96 0.00 4.00
790 1029 4.278419 GGCTTGTAAGGCCTTGTATAATGG 59.722 45.833 28.77 10.34 45.57 3.16
791 1030 5.438761 GGCTTGTAAGGCCTTGTATAATG 57.561 43.478 28.77 11.89 45.57 1.90
803 1042 3.243737 GGGAAAAGTTGTGGCTTGTAAGG 60.244 47.826 0.00 0.00 0.00 2.69
804 1043 3.243737 GGGGAAAAGTTGTGGCTTGTAAG 60.244 47.826 0.00 0.00 0.00 2.34
805 1044 2.696187 GGGGAAAAGTTGTGGCTTGTAA 59.304 45.455 0.00 0.00 0.00 2.41
806 1045 2.312390 GGGGAAAAGTTGTGGCTTGTA 58.688 47.619 0.00 0.00 0.00 2.41
807 1046 1.119684 GGGGAAAAGTTGTGGCTTGT 58.880 50.000 0.00 0.00 0.00 3.16
808 1047 1.118838 TGGGGAAAAGTTGTGGCTTG 58.881 50.000 0.00 0.00 0.00 4.01
809 1048 1.119684 GTGGGGAAAAGTTGTGGCTT 58.880 50.000 0.00 0.00 0.00 4.35
810 1049 0.759060 GGTGGGGAAAAGTTGTGGCT 60.759 55.000 0.00 0.00 0.00 4.75
1054 1293 1.674322 CTCACGGCCGGGAAAATGT 60.674 57.895 32.95 2.42 0.00 2.71
1061 1301 2.940890 AATACATGCTCACGGCCGGG 62.941 60.000 31.76 28.69 40.92 5.73
1062 1302 1.095228 AAATACATGCTCACGGCCGG 61.095 55.000 31.76 18.67 40.92 6.13
1063 1303 0.732571 AAAATACATGCTCACGGCCG 59.267 50.000 26.86 26.86 40.92 6.13
1064 1304 1.798813 GCAAAATACATGCTCACGGCC 60.799 52.381 0.00 0.00 40.64 6.13
1065 1305 1.548986 GCAAAATACATGCTCACGGC 58.451 50.000 0.00 0.00 40.64 5.68
1091 1331 3.587797 TCGACTGTAAATCCACTGACC 57.412 47.619 0.00 0.00 0.00 4.02
1170 1413 1.457346 GGTTTGGTGCTCAGAGATGG 58.543 55.000 0.00 0.00 0.00 3.51
1200 1443 1.136828 AGCCCAAACAGACCACTACA 58.863 50.000 0.00 0.00 0.00 2.74
1201 1444 3.335579 CTTAGCCCAAACAGACCACTAC 58.664 50.000 0.00 0.00 0.00 2.73
1202 1445 2.290071 GCTTAGCCCAAACAGACCACTA 60.290 50.000 0.00 0.00 0.00 2.74
1378 1624 6.043590 TGAAGCACAATCCACATCTCCTATAT 59.956 38.462 0.00 0.00 0.00 0.86
1379 1625 5.366477 TGAAGCACAATCCACATCTCCTATA 59.634 40.000 0.00 0.00 0.00 1.31
1453 1699 1.217882 ACCGAGCAACTGTTTCTTCG 58.782 50.000 9.72 9.72 0.00 3.79
1476 1722 3.084786 GTTTTTGTGCAGCTATCCCTCT 58.915 45.455 0.00 0.00 0.00 3.69
1485 1731 5.964751 CCTTTGTATTTTGTTTTTGTGCAGC 59.035 36.000 0.00 0.00 0.00 5.25
1500 1746 3.010584 AGTGACTCCATGCCCTTTGTATT 59.989 43.478 0.00 0.00 0.00 1.89
1562 1808 5.560722 TGTGGGTGAGTAGAAATCTTCAA 57.439 39.130 0.00 0.00 0.00 2.69
1563 1809 5.762179 ATGTGGGTGAGTAGAAATCTTCA 57.238 39.130 0.00 0.00 0.00 3.02
1567 1813 5.501156 AGGAAATGTGGGTGAGTAGAAATC 58.499 41.667 0.00 0.00 0.00 2.17
1609 1855 5.791336 TCATGCCTACTGTATACAAGGAG 57.209 43.478 22.61 14.74 0.00 3.69
1796 2046 4.278419 GTGTAAAGAGTTTCCCACTGCATT 59.722 41.667 0.00 0.00 35.01 3.56
1816 2066 0.831966 TTGGTACCAGTGAACCGTGT 59.168 50.000 15.65 0.00 38.70 4.49
1848 2098 0.791983 CGCAGCGCAAGACAGAATTG 60.792 55.000 11.47 0.00 43.02 2.32
1921 2171 7.432252 GGTTCGATTATTATTTGCCAAGTGAAG 59.568 37.037 0.00 0.00 0.00 3.02
1983 2233 9.438228 TGACCATTTATAACAATACGTTCTGAA 57.562 29.630 0.00 0.00 39.14 3.02
2260 2514 5.068329 TCCACAACAATCACATACTGCAAAA 59.932 36.000 0.00 0.00 0.00 2.44
3063 3317 7.549134 TCATCAAACTGTAGCTTTCATATTCGT 59.451 33.333 0.00 0.00 0.00 3.85
3599 3857 1.633852 GCAGAGCTCCTGTGCTTTCG 61.634 60.000 16.83 0.00 45.47 3.46
3600 3858 2.169842 GCAGAGCTCCTGTGCTTTC 58.830 57.895 16.83 0.00 45.47 2.62
3601 3859 4.393693 GCAGAGCTCCTGTGCTTT 57.606 55.556 16.83 0.00 45.47 3.51
4038 4296 3.623510 GCTCAGGAGTTGTAATACAAGCC 59.376 47.826 6.03 10.82 39.00 4.35
4352 4610 8.011290 AGACATTTATTAAGGCTCTAGGGTCTA 58.989 37.037 0.00 0.00 0.00 2.59
4563 4821 7.725251 AGGATCAAAGTTTTTACTGAAATGCA 58.275 30.769 0.00 0.00 0.00 3.96
4654 4912 9.950680 CACAAACTCATTTAAGTACACTTTGAT 57.049 29.630 0.00 0.00 37.40 2.57
4655 4913 9.168451 TCACAAACTCATTTAAGTACACTTTGA 57.832 29.630 0.00 0.00 37.40 2.69
4656 4914 9.438291 CTCACAAACTCATTTAAGTACACTTTG 57.562 33.333 0.00 0.00 37.40 2.77
4658 4916 7.255139 GGCTCACAAACTCATTTAAGTACACTT 60.255 37.037 0.00 0.00 39.85 3.16
4659 4917 6.204882 GGCTCACAAACTCATTTAAGTACACT 59.795 38.462 0.00 0.00 0.00 3.55
4662 4920 6.426937 TCTGGCTCACAAACTCATTTAAGTAC 59.573 38.462 0.00 0.00 0.00 2.73
4695 4954 8.495148 CAACTTTAACCAATTCAAATTACCAGC 58.505 33.333 0.00 0.00 0.00 4.85
4763 5022 4.313282 TTCACAGATGAAACTGAGCTCAG 58.687 43.478 36.57 36.57 41.99 3.35
4817 5076 4.922206 ACATGCCTTGAGATTTAACAGGA 58.078 39.130 0.00 0.00 0.00 3.86
4837 5096 2.890311 CCCAACTAGTTTTGGCATGACA 59.110 45.455 5.07 0.00 44.29 3.58
4904 5163 6.006759 TCATCTCTATTGCATGAGTAGACG 57.993 41.667 0.00 0.00 0.00 4.18
4950 5209 6.876257 GGAGTATAATCTCCCATGAATGTGAC 59.124 42.308 0.00 0.00 45.84 3.67
4976 5235 2.005560 GCGGAGTAAAAAGGACCGGAG 61.006 57.143 9.46 0.00 43.15 4.63
4977 5236 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.000 9.46 0.00 43.15 5.14
4978 5237 1.356527 CGCGGAGTAAAAAGGACCGG 61.357 60.000 0.00 0.00 43.15 5.28
4979 5238 0.668401 ACGCGGAGTAAAAAGGACCG 60.668 55.000 12.47 0.00 45.26 4.79
4980 5239 2.368655 TACGCGGAGTAAAAAGGACC 57.631 50.000 12.47 0.00 31.26 4.46
4981 5240 5.343249 TCTAATACGCGGAGTAAAAAGGAC 58.657 41.667 12.47 0.00 39.04 3.85
4982 5241 5.581126 TCTAATACGCGGAGTAAAAAGGA 57.419 39.130 12.47 0.00 39.04 3.36
4983 5242 6.839820 AATCTAATACGCGGAGTAAAAAGG 57.160 37.500 12.47 0.00 39.04 3.11
4984 5243 8.056571 CAGAAATCTAATACGCGGAGTAAAAAG 58.943 37.037 12.47 0.00 39.04 2.27
4985 5244 7.546667 ACAGAAATCTAATACGCGGAGTAAAAA 59.453 33.333 12.47 0.00 39.04 1.94
4986 5245 7.037438 ACAGAAATCTAATACGCGGAGTAAAA 58.963 34.615 12.47 0.00 39.04 1.52
4987 5246 6.567050 ACAGAAATCTAATACGCGGAGTAAA 58.433 36.000 12.47 0.00 39.04 2.01
4988 5247 6.140303 ACAGAAATCTAATACGCGGAGTAA 57.860 37.500 12.47 0.00 39.04 2.24
4989 5248 5.297527 TGACAGAAATCTAATACGCGGAGTA 59.702 40.000 12.47 4.11 40.03 2.59
4990 5249 4.097437 TGACAGAAATCTAATACGCGGAGT 59.903 41.667 12.47 2.60 0.00 3.85
4991 5250 4.607955 TGACAGAAATCTAATACGCGGAG 58.392 43.478 12.47 1.75 0.00 4.63
4992 5251 4.642445 TGACAGAAATCTAATACGCGGA 57.358 40.909 12.47 0.00 0.00 5.54
4993 5252 4.804139 ACTTGACAGAAATCTAATACGCGG 59.196 41.667 12.47 0.00 0.00 6.46
4994 5253 5.515270 TGACTTGACAGAAATCTAATACGCG 59.485 40.000 3.53 3.53 0.00 6.01
4995 5254 6.887376 TGACTTGACAGAAATCTAATACGC 57.113 37.500 0.00 0.00 0.00 4.42
4996 5255 8.926710 AGTTTGACTTGACAGAAATCTAATACG 58.073 33.333 0.00 0.00 0.00 3.06
5001 5260 9.607988 TGTAAAGTTTGACTTGACAGAAATCTA 57.392 29.630 6.87 0.00 42.97 1.98
5002 5261 8.506168 TGTAAAGTTTGACTTGACAGAAATCT 57.494 30.769 6.87 0.00 42.97 2.40
5003 5262 9.567848 TTTGTAAAGTTTGACTTGACAGAAATC 57.432 29.630 10.12 0.00 46.96 2.17
5004 5263 9.573133 CTTTGTAAAGTTTGACTTGACAGAAAT 57.427 29.630 10.12 0.00 46.96 2.17
5005 5264 8.573035 ACTTTGTAAAGTTTGACTTGACAGAAA 58.427 29.630 10.12 4.09 46.96 2.52
5006 5265 8.106247 ACTTTGTAAAGTTTGACTTGACAGAA 57.894 30.769 10.12 7.80 46.96 3.02
5007 5266 7.681939 ACTTTGTAAAGTTTGACTTGACAGA 57.318 32.000 10.12 6.33 46.96 3.41
5082 5341 9.183368 AGGCTTCGTAAGTAAGTAAGTAAGTAT 57.817 33.333 0.00 0.00 39.48 2.12
5083 5342 8.567285 AGGCTTCGTAAGTAAGTAAGTAAGTA 57.433 34.615 0.00 0.00 39.48 2.24
5084 5343 7.459795 AGGCTTCGTAAGTAAGTAAGTAAGT 57.540 36.000 0.00 0.00 39.48 2.24
5085 5344 8.754230 AAAGGCTTCGTAAGTAAGTAAGTAAG 57.246 34.615 0.00 0.00 39.48 2.34
5088 5347 9.363763 GATAAAAGGCTTCGTAAGTAAGTAAGT 57.636 33.333 0.00 0.00 39.48 2.24
5089 5348 8.815189 GGATAAAAGGCTTCGTAAGTAAGTAAG 58.185 37.037 0.00 0.00 39.48 2.34
5090 5349 7.765819 GGGATAAAAGGCTTCGTAAGTAAGTAA 59.234 37.037 0.00 0.00 39.48 2.24
5091 5350 7.093377 TGGGATAAAAGGCTTCGTAAGTAAGTA 60.093 37.037 0.00 0.00 39.48 2.24
5092 5351 6.111382 GGGATAAAAGGCTTCGTAAGTAAGT 58.889 40.000 0.00 0.00 39.48 2.24
5093 5352 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
5094 5353 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
5095 5354 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
5096 5355 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
5097 5356 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
5098 5357 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
5099 5358 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
5100 5359 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
5101 5360 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
5102 5361 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
5103 5362 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
5104 5363 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
5116 5375 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5117 5376 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
5118 5377 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
5119 5378 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
5120 5379 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
5121 5380 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
5122 5381 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
5123 5382 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
5124 5383 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
5125 5384 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
5126 5385 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
5127 5386 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
5128 5387 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
5129 5388 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
5131 5390 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
5141 5400 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
5142 5401 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
5143 5402 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
5144 5403 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
5145 5404 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
5146 5405 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
5147 5406 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
5148 5407 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
5149 5408 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
5150 5409 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
5151 5410 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
5152 5411 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
5153 5412 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
5154 5413 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
5155 5414 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
5156 5415 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
5157 5416 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
5158 5417 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
5159 5418 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
5171 5430 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
5172 5431 5.446860 CAAGAGTAGTACTAGGATGGGTGA 58.553 45.833 1.87 0.00 0.00 4.02
5173 5432 4.038162 GCAAGAGTAGTACTAGGATGGGTG 59.962 50.000 1.87 0.00 0.00 4.61
5174 5433 4.216708 GCAAGAGTAGTACTAGGATGGGT 58.783 47.826 1.87 0.00 0.00 4.51
5175 5434 3.574826 GGCAAGAGTAGTACTAGGATGGG 59.425 52.174 1.87 0.00 0.00 4.00
5176 5435 3.574826 GGGCAAGAGTAGTACTAGGATGG 59.425 52.174 1.87 0.00 0.00 3.51
5177 5436 4.215908 TGGGCAAGAGTAGTACTAGGATG 58.784 47.826 1.87 2.08 0.00 3.51
5178 5437 4.537945 TGGGCAAGAGTAGTACTAGGAT 57.462 45.455 1.87 0.00 0.00 3.24
5179 5438 4.326600 TTGGGCAAGAGTAGTACTAGGA 57.673 45.455 1.87 0.00 0.00 2.94
5180 5439 5.360591 CATTTGGGCAAGAGTAGTACTAGG 58.639 45.833 1.87 0.00 0.00 3.02
5181 5440 5.360591 CCATTTGGGCAAGAGTAGTACTAG 58.639 45.833 1.87 0.00 0.00 2.57
5182 5441 5.353394 CCATTTGGGCAAGAGTAGTACTA 57.647 43.478 1.88 0.00 0.00 1.82
5183 5442 4.222124 CCATTTGGGCAAGAGTAGTACT 57.778 45.455 1.37 1.37 0.00 2.73
5204 5463 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
5205 5464 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
5206 5465 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
5207 5466 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
5208 5467 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
5209 5468 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
5210 5469 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
5211 5470 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
5213 5472 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
5214 5473 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
5215 5474 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
5216 5475 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
5217 5476 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
5218 5477 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
5219 5478 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
5220 5479 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
5221 5480 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
5222 5481 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
5223 5482 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
5224 5483 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
5225 5484 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
5226 5485 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
5227 5486 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
5228 5487 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
5229 5488 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
5230 5489 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
5231 5490 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
5242 5501 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
5243 5502 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
5244 5503 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
5245 5504 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
5246 5505 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
5247 5506 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
5248 5507 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
5249 5508 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
5250 5509 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
5251 5510 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
5252 5511 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
5253 5512 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
5254 5513 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
5255 5514 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
5256 5515 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
5257 5516 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
5258 5517 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
5259 5518 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
5260 5519 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
5271 5530 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
5272 5531 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
5273 5532 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
5274 5533 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
5275 5534 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
5276 5535 0.977395 AGGAAGTCCTCGTGAAAGGG 59.023 55.000 0.00 0.00 44.77 3.95
5277 5536 2.166664 CCTAGGAAGTCCTCGTGAAAGG 59.833 54.545 1.05 0.05 44.77 3.11
5278 5537 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
5279 5538 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
5280 5539 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
5281 5540 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
5282 5541 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
5283 5542 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
5284 5543 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
5285 5544 2.380941 GTGACCTCCTAGGAAGTCCTC 58.619 57.143 29.70 21.09 44.77 3.71
5287 5546 1.487300 GGTGACCTCCTAGGAAGTCC 58.513 60.000 29.70 22.12 37.67 3.85
5301 5560 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
5302 5561 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
5303 5562 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
5304 5563 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
5305 5564 4.337145 AGCGAGAATAGTACTAGGATGGG 58.663 47.826 8.85 0.00 0.00 4.00
5306 5565 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
5307 5566 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
5308 5567 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
5309 5568 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
5310 5569 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
5311 5570 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
5312 5571 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
5313 5572 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
5314 5573 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
5315 5574 5.353394 AACCCATTTGAGCGAGAATAGTA 57.647 39.130 0.00 0.00 0.00 1.82
5316 5575 3.914426 ACCCATTTGAGCGAGAATAGT 57.086 42.857 0.00 0.00 0.00 2.12
5317 5576 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
5318 5577 4.584874 TGAAACCCATTTGAGCGAGAATA 58.415 39.130 0.00 0.00 0.00 1.75
5319 5578 3.420893 TGAAACCCATTTGAGCGAGAAT 58.579 40.909 0.00 0.00 0.00 2.40
5320 5579 2.857483 TGAAACCCATTTGAGCGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
5321 5580 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
5322 5581 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
5323 5582 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
5324 5583 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.