Multiple sequence alignment - TraesCS7A01G414800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G414800 chr7A 100.000 2983 0 0 1 2983 606192708 606195690 0.000000e+00 5509
1 TraesCS7A01G414800 chrUn 99.046 2517 23 1 1 2516 122646245 122648761 0.000000e+00 4514
2 TraesCS7A01G414800 chrUn 87.838 296 29 7 2568 2857 71401148 71400854 1.020000e-89 340
3 TraesCS7A01G414800 chrUn 87.838 296 29 7 2568 2857 71495867 71495573 1.020000e-89 340
4 TraesCS7A01G414800 chr5B 96.065 2516 70 4 1 2513 345810462 345812951 0.000000e+00 4071
5 TraesCS7A01G414800 chr5B 96.095 1562 36 1 949 2510 474614615 474613079 0.000000e+00 2523
6 TraesCS7A01G414800 chr4B 92.683 2542 148 20 1 2512 97793151 97790618 0.000000e+00 3629
7 TraesCS7A01G414800 chr4B 97.512 1849 32 3 1 1849 535058510 535060344 0.000000e+00 3147
8 TraesCS7A01G414800 chr4B 97.865 1780 36 2 734 2513 2711861 2710084 0.000000e+00 3075
9 TraesCS7A01G414800 chr4B 92.199 1833 107 22 1 1802 97890527 97888700 0.000000e+00 2560
10 TraesCS7A01G414800 chr4B 97.841 741 16 0 1 741 2732420 2731680 0.000000e+00 1280
11 TraesCS7A01G414800 chr4B 83.042 401 40 23 2563 2945 103547853 103548243 3.680000e-89 339
12 TraesCS7A01G414800 chr4B 82.620 374 49 14 2564 2923 389427437 389427066 1.730000e-82 316
13 TraesCS7A01G414800 chr2A 99.494 1778 9 0 1 1778 572843941 572845718 0.000000e+00 3234
14 TraesCS7A01G414800 chr2A 92.395 1407 82 5 732 2115 173514672 173513268 0.000000e+00 1982
15 TraesCS7A01G414800 chr2A 89.500 200 16 5 612 807 173514711 173514513 6.390000e-62 248
16 TraesCS7A01G414800 chr3D 95.652 1771 75 2 742 2511 384008839 384010608 0.000000e+00 2843
17 TraesCS7A01G414800 chr3D 95.232 797 30 6 1 796 384008187 384008976 0.000000e+00 1254
18 TraesCS7A01G414800 chr3D 84.031 382 31 21 2563 2923 278939553 278939925 1.020000e-89 340
19 TraesCS7A01G414800 chr3D 81.984 383 47 17 2563 2935 59974571 59974941 3.740000e-79 305
20 TraesCS7A01G414800 chr7B 96.989 1561 47 0 950 2510 51266276 51267836 0.000000e+00 2623
21 TraesCS7A01G414800 chr6B 95.566 1511 59 6 1009 2513 690878403 690876895 0.000000e+00 2412
22 TraesCS7A01G414800 chr6A 91.997 1412 77 15 728 2115 511525941 511527340 0.000000e+00 1949
23 TraesCS7A01G414800 chr6A 82.653 392 42 24 2555 2931 600262318 600261938 1.030000e-84 324
24 TraesCS7A01G414800 chr1B 97.413 773 19 1 1 773 66932312 66931541 0.000000e+00 1315
25 TraesCS7A01G414800 chr5D 82.850 379 52 9 2563 2933 506689932 506689559 7.970000e-86 327
26 TraesCS7A01G414800 chr5A 84.091 352 39 16 2564 2909 124620866 124621206 1.030000e-84 324
27 TraesCS7A01G414800 chr3A 85.052 194 23 6 618 807 14048990 14048799 3.030000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G414800 chr7A 606192708 606195690 2982 False 5509.0 5509 100.0000 1 2983 1 chr7A.!!$F1 2982
1 TraesCS7A01G414800 chrUn 122646245 122648761 2516 False 4514.0 4514 99.0460 1 2516 1 chrUn.!!$F1 2515
2 TraesCS7A01G414800 chr5B 345810462 345812951 2489 False 4071.0 4071 96.0650 1 2513 1 chr5B.!!$F1 2512
3 TraesCS7A01G414800 chr5B 474613079 474614615 1536 True 2523.0 2523 96.0950 949 2510 1 chr5B.!!$R1 1561
4 TraesCS7A01G414800 chr4B 97790618 97793151 2533 True 3629.0 3629 92.6830 1 2512 1 chr4B.!!$R3 2511
5 TraesCS7A01G414800 chr4B 535058510 535060344 1834 False 3147.0 3147 97.5120 1 1849 1 chr4B.!!$F2 1848
6 TraesCS7A01G414800 chr4B 2710084 2711861 1777 True 3075.0 3075 97.8650 734 2513 1 chr4B.!!$R1 1779
7 TraesCS7A01G414800 chr4B 97888700 97890527 1827 True 2560.0 2560 92.1990 1 1802 1 chr4B.!!$R4 1801
8 TraesCS7A01G414800 chr4B 2731680 2732420 740 True 1280.0 1280 97.8410 1 741 1 chr4B.!!$R2 740
9 TraesCS7A01G414800 chr2A 572843941 572845718 1777 False 3234.0 3234 99.4940 1 1778 1 chr2A.!!$F1 1777
10 TraesCS7A01G414800 chr2A 173513268 173514711 1443 True 1115.0 1982 90.9475 612 2115 2 chr2A.!!$R1 1503
11 TraesCS7A01G414800 chr3D 384008187 384010608 2421 False 2048.5 2843 95.4420 1 2511 2 chr3D.!!$F3 2510
12 TraesCS7A01G414800 chr7B 51266276 51267836 1560 False 2623.0 2623 96.9890 950 2510 1 chr7B.!!$F1 1560
13 TraesCS7A01G414800 chr6B 690876895 690878403 1508 True 2412.0 2412 95.5660 1009 2513 1 chr6B.!!$R1 1504
14 TraesCS7A01G414800 chr6A 511525941 511527340 1399 False 1949.0 1949 91.9970 728 2115 1 chr6A.!!$F1 1387
15 TraesCS7A01G414800 chr1B 66931541 66932312 771 True 1315.0 1315 97.4130 1 773 1 chr1B.!!$R1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 6.983906 AGGAAAATTCTTCCTTGTTGATGT 57.016 33.333 13.15 0.00 46.21 3.06 F
1176 1339 3.421844 GAATAGGTGGACAAGGCTTGTT 58.578 45.455 31.60 18.81 45.52 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1975 2.148916 TGACAGCCTTGTACAAGTCG 57.851 50.0 29.05 20.12 37.76 4.18 R
2774 2997 0.036010 ATGTGTGTGCTACTGGCCTC 60.036 55.0 3.32 0.00 40.92 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 184 6.983906 AGGAAAATTCTTCCTTGTTGATGT 57.016 33.333 13.15 0.00 46.21 3.06
1176 1339 3.421844 GAATAGGTGGACAAGGCTTGTT 58.578 45.455 31.60 18.81 45.52 2.83
1341 1507 8.507249 AGTGCTCAAAGAGTGTTAAAATGATAC 58.493 33.333 0.00 0.00 31.39 2.24
1808 1975 1.966762 CCATGCTGAAACACACCCC 59.033 57.895 0.00 0.00 0.00 4.95
2395 2618 1.065345 AGTCTCAGCTCAGCATGCATT 60.065 47.619 21.98 0.00 34.76 3.56
2514 2737 4.079253 CAGCTACCAAACACACCCTAAAT 58.921 43.478 0.00 0.00 0.00 1.40
2515 2738 4.079253 AGCTACCAAACACACCCTAAATG 58.921 43.478 0.00 0.00 0.00 2.32
2517 2740 3.603965 ACCAAACACACCCTAAATGGA 57.396 42.857 0.00 0.00 38.35 3.41
2518 2741 3.227614 ACCAAACACACCCTAAATGGAC 58.772 45.455 0.00 0.00 38.35 4.02
2519 2742 3.117284 ACCAAACACACCCTAAATGGACT 60.117 43.478 0.00 0.00 38.35 3.85
2520 2743 3.895041 CCAAACACACCCTAAATGGACTT 59.105 43.478 0.00 0.00 38.35 3.01
2521 2744 4.343814 CCAAACACACCCTAAATGGACTTT 59.656 41.667 0.00 0.00 38.35 2.66
2522 2745 5.288804 CAAACACACCCTAAATGGACTTTG 58.711 41.667 0.00 0.00 38.35 2.77
2523 2746 2.890945 ACACACCCTAAATGGACTTTGC 59.109 45.455 0.00 0.00 38.35 3.68
2524 2747 3.157087 CACACCCTAAATGGACTTTGCT 58.843 45.455 0.00 0.00 38.35 3.91
2525 2748 3.057315 CACACCCTAAATGGACTTTGCTG 60.057 47.826 0.00 0.00 38.35 4.41
2526 2749 2.094545 CACCCTAAATGGACTTTGCTGC 60.095 50.000 0.00 0.00 38.35 5.25
2527 2750 2.170166 CCCTAAATGGACTTTGCTGCA 58.830 47.619 0.00 0.00 38.35 4.41
2528 2751 2.094545 CCCTAAATGGACTTTGCTGCAC 60.095 50.000 0.00 0.00 38.35 4.57
2529 2752 2.414559 CCTAAATGGACTTTGCTGCACG 60.415 50.000 0.00 0.00 38.35 5.34
2530 2753 1.317613 AAATGGACTTTGCTGCACGA 58.682 45.000 0.00 0.00 0.00 4.35
2531 2754 1.317613 AATGGACTTTGCTGCACGAA 58.682 45.000 0.00 0.00 0.00 3.85
2532 2755 0.593128 ATGGACTTTGCTGCACGAAC 59.407 50.000 0.00 0.00 0.00 3.95
2533 2756 1.082756 GGACTTTGCTGCACGAACG 60.083 57.895 0.00 0.00 0.00 3.95
2534 2757 1.722507 GACTTTGCTGCACGAACGC 60.723 57.895 0.00 0.00 0.00 4.84
2535 2758 2.105960 GACTTTGCTGCACGAACGCT 62.106 55.000 0.00 0.00 0.00 5.07
2536 2759 1.439365 CTTTGCTGCACGAACGCTC 60.439 57.895 0.00 0.00 0.00 5.03
2537 2760 2.770587 CTTTGCTGCACGAACGCTCC 62.771 60.000 0.00 0.00 0.00 4.70
2538 2761 4.600576 TGCTGCACGAACGCTCCA 62.601 61.111 0.00 0.00 0.00 3.86
2539 2762 4.077188 GCTGCACGAACGCTCCAC 62.077 66.667 0.00 0.00 0.00 4.02
2540 2763 2.356313 CTGCACGAACGCTCCACT 60.356 61.111 0.00 0.00 0.00 4.00
2541 2764 2.355837 TGCACGAACGCTCCACTC 60.356 61.111 0.00 0.00 0.00 3.51
2542 2765 2.355837 GCACGAACGCTCCACTCA 60.356 61.111 0.00 0.00 0.00 3.41
2543 2766 1.738099 GCACGAACGCTCCACTCAT 60.738 57.895 0.00 0.00 0.00 2.90
2544 2767 1.959899 GCACGAACGCTCCACTCATG 61.960 60.000 0.00 0.00 0.00 3.07
2545 2768 1.738099 ACGAACGCTCCACTCATGC 60.738 57.895 0.00 0.00 0.00 4.06
2546 2769 1.737735 CGAACGCTCCACTCATGCA 60.738 57.895 0.00 0.00 0.00 3.96
2547 2770 1.086067 CGAACGCTCCACTCATGCAT 61.086 55.000 0.00 0.00 0.00 3.96
2548 2771 0.376152 GAACGCTCCACTCATGCATG 59.624 55.000 21.07 21.07 0.00 4.06
2549 2772 1.028330 AACGCTCCACTCATGCATGG 61.028 55.000 25.97 18.30 37.32 3.66
2550 2773 2.184830 CGCTCCACTCATGCATGGG 61.185 63.158 25.24 25.24 36.56 4.00
2551 2774 1.826921 GCTCCACTCATGCATGGGG 60.827 63.158 29.60 24.27 39.73 4.96
2552 2775 1.611419 CTCCACTCATGCATGGGGT 59.389 57.895 29.60 22.26 36.56 4.95
2553 2776 0.750546 CTCCACTCATGCATGGGGTG 60.751 60.000 29.60 29.54 36.56 4.61
2554 2777 1.206811 TCCACTCATGCATGGGGTGA 61.207 55.000 33.87 25.82 36.56 4.02
2555 2778 0.106369 CCACTCATGCATGGGGTGAT 60.106 55.000 33.87 15.69 35.56 3.06
2556 2779 1.143481 CCACTCATGCATGGGGTGATA 59.857 52.381 33.87 15.32 35.56 2.15
2557 2780 2.224942 CCACTCATGCATGGGGTGATAT 60.225 50.000 33.87 14.78 35.56 1.63
2558 2781 3.009363 CCACTCATGCATGGGGTGATATA 59.991 47.826 33.87 14.17 35.56 0.86
2559 2782 4.324797 CCACTCATGCATGGGGTGATATAT 60.325 45.833 33.87 13.58 35.56 0.86
2560 2783 4.638865 CACTCATGCATGGGGTGATATATG 59.361 45.833 31.19 17.35 35.56 1.78
2561 2784 4.204799 CTCATGCATGGGGTGATATATGG 58.795 47.826 25.97 0.00 0.00 2.74
2562 2785 3.851374 TCATGCATGGGGTGATATATGGA 59.149 43.478 25.97 0.00 0.00 3.41
2563 2786 4.080186 TCATGCATGGGGTGATATATGGAG 60.080 45.833 25.97 0.00 0.00 3.86
2564 2787 3.530017 TGCATGGGGTGATATATGGAGA 58.470 45.455 0.00 0.00 0.00 3.71
2565 2788 3.915711 TGCATGGGGTGATATATGGAGAA 59.084 43.478 0.00 0.00 0.00 2.87
2566 2789 4.353489 TGCATGGGGTGATATATGGAGAAA 59.647 41.667 0.00 0.00 0.00 2.52
2567 2790 4.702131 GCATGGGGTGATATATGGAGAAAC 59.298 45.833 0.00 0.00 0.00 2.78
2568 2791 5.748734 GCATGGGGTGATATATGGAGAAACA 60.749 44.000 0.00 0.00 0.00 2.83
2569 2792 5.985175 TGGGGTGATATATGGAGAAACAA 57.015 39.130 0.00 0.00 0.00 2.83
2570 2793 6.529084 TGGGGTGATATATGGAGAAACAAT 57.471 37.500 0.00 0.00 0.00 2.71
2571 2794 6.921412 TGGGGTGATATATGGAGAAACAATT 58.079 36.000 0.00 0.00 0.00 2.32
2572 2795 7.004086 TGGGGTGATATATGGAGAAACAATTC 58.996 38.462 0.00 0.00 35.70 2.17
2573 2796 6.434340 GGGGTGATATATGGAGAAACAATTCC 59.566 42.308 0.00 0.00 36.12 3.01
2574 2797 7.234355 GGGTGATATATGGAGAAACAATTCCT 58.766 38.462 0.00 0.00 36.12 3.36
2575 2798 7.725844 GGGTGATATATGGAGAAACAATTCCTT 59.274 37.037 0.00 0.00 36.12 3.36
2576 2799 9.793259 GGTGATATATGGAGAAACAATTCCTTA 57.207 33.333 0.00 0.00 36.12 2.69
2622 2845 8.938906 TCGTTTCCTTATTTGACACTAAATACC 58.061 33.333 0.00 0.00 33.53 2.73
2623 2846 8.943002 CGTTTCCTTATTTGACACTAAATACCT 58.057 33.333 0.00 0.00 33.53 3.08
2646 2869 9.280174 ACCTTTTTCTTTCATATCTAACAACGA 57.720 29.630 0.00 0.00 0.00 3.85
2647 2870 9.760660 CCTTTTTCTTTCATATCTAACAACGAG 57.239 33.333 0.00 0.00 0.00 4.18
2650 2873 9.706691 TTTTCTTTCATATCTAACAACGAGTCT 57.293 29.630 0.00 0.00 0.00 3.24
2662 2885 9.431887 TCTAACAACGAGTCTAAATTTTATGCT 57.568 29.630 0.00 0.00 0.00 3.79
2665 2888 9.744468 AACAACGAGTCTAAATTTTATGCTTTT 57.256 25.926 0.00 0.00 0.00 2.27
2666 2889 9.744468 ACAACGAGTCTAAATTTTATGCTTTTT 57.256 25.926 0.00 0.00 0.00 1.94
2681 2904 9.615295 TTTATGCTTTTTATAACACTTTCGTCC 57.385 29.630 0.00 0.00 0.00 4.79
2682 2905 6.621316 TGCTTTTTATAACACTTTCGTCCA 57.379 33.333 0.00 0.00 0.00 4.02
2683 2906 7.209471 TGCTTTTTATAACACTTTCGTCCAT 57.791 32.000 0.00 0.00 0.00 3.41
2684 2907 7.653647 TGCTTTTTATAACACTTTCGTCCATT 58.346 30.769 0.00 0.00 0.00 3.16
2685 2908 8.138712 TGCTTTTTATAACACTTTCGTCCATTT 58.861 29.630 0.00 0.00 0.00 2.32
2686 2909 8.974408 GCTTTTTATAACACTTTCGTCCATTTT 58.026 29.630 0.00 0.00 0.00 1.82
2692 2915 6.937436 AACACTTTCGTCCATTTTAAGACT 57.063 33.333 0.00 0.00 0.00 3.24
2693 2916 9.715121 ATAACACTTTCGTCCATTTTAAGACTA 57.285 29.630 0.00 0.00 0.00 2.59
2694 2917 8.441312 AACACTTTCGTCCATTTTAAGACTAA 57.559 30.769 0.00 0.00 0.00 2.24
2695 2918 8.441312 ACACTTTCGTCCATTTTAAGACTAAA 57.559 30.769 0.00 0.00 0.00 1.85
2696 2919 9.063615 ACACTTTCGTCCATTTTAAGACTAAAT 57.936 29.630 0.00 0.00 30.30 1.40
2702 2925 8.938906 TCGTCCATTTTAAGACTAAATAACACC 58.061 33.333 0.00 0.00 0.00 4.16
2703 2926 8.943002 CGTCCATTTTAAGACTAAATAACACCT 58.057 33.333 0.00 0.00 0.00 4.00
2712 2935 7.981102 AGACTAAATAACACCTGAAAAGACC 57.019 36.000 0.00 0.00 0.00 3.85
2713 2936 6.940867 AGACTAAATAACACCTGAAAAGACCC 59.059 38.462 0.00 0.00 0.00 4.46
2714 2937 6.849151 ACTAAATAACACCTGAAAAGACCCT 58.151 36.000 0.00 0.00 0.00 4.34
2715 2938 7.295340 ACTAAATAACACCTGAAAAGACCCTT 58.705 34.615 0.00 0.00 0.00 3.95
2716 2939 7.783119 ACTAAATAACACCTGAAAAGACCCTTT 59.217 33.333 0.00 0.00 0.00 3.11
2717 2940 7.432148 AAATAACACCTGAAAAGACCCTTTT 57.568 32.000 4.55 4.55 0.00 2.27
2718 2941 4.736126 AACACCTGAAAAGACCCTTTTG 57.264 40.909 9.14 0.00 0.00 2.44
2719 2942 2.430694 ACACCTGAAAAGACCCTTTTGC 59.569 45.455 9.14 3.16 0.00 3.68
2720 2943 2.695147 CACCTGAAAAGACCCTTTTGCT 59.305 45.455 9.14 0.00 0.00 3.91
2721 2944 2.959030 ACCTGAAAAGACCCTTTTGCTC 59.041 45.455 9.14 0.00 0.00 4.26
2722 2945 2.297315 CCTGAAAAGACCCTTTTGCTCC 59.703 50.000 9.14 0.00 0.00 4.70
2723 2946 3.225940 CTGAAAAGACCCTTTTGCTCCT 58.774 45.455 9.14 0.00 0.00 3.69
2724 2947 3.222603 TGAAAAGACCCTTTTGCTCCTC 58.777 45.455 9.14 0.00 0.00 3.71
2725 2948 3.222603 GAAAAGACCCTTTTGCTCCTCA 58.777 45.455 9.14 0.00 0.00 3.86
2726 2949 3.532641 AAAGACCCTTTTGCTCCTCAT 57.467 42.857 0.00 0.00 0.00 2.90
2727 2950 4.657814 AAAGACCCTTTTGCTCCTCATA 57.342 40.909 0.00 0.00 0.00 2.15
2728 2951 4.870021 AAGACCCTTTTGCTCCTCATAT 57.130 40.909 0.00 0.00 0.00 1.78
2729 2952 5.975988 AAGACCCTTTTGCTCCTCATATA 57.024 39.130 0.00 0.00 0.00 0.86
2730 2953 5.975988 AGACCCTTTTGCTCCTCATATAA 57.024 39.130 0.00 0.00 0.00 0.98
2731 2954 6.521527 AGACCCTTTTGCTCCTCATATAAT 57.478 37.500 0.00 0.00 0.00 1.28
2732 2955 7.633018 AGACCCTTTTGCTCCTCATATAATA 57.367 36.000 0.00 0.00 0.00 0.98
2733 2956 8.224620 AGACCCTTTTGCTCCTCATATAATAT 57.775 34.615 0.00 0.00 0.00 1.28
2734 2957 8.105829 AGACCCTTTTGCTCCTCATATAATATG 58.894 37.037 0.00 0.00 0.00 1.78
2735 2958 7.759607 ACCCTTTTGCTCCTCATATAATATGT 58.240 34.615 0.00 0.00 0.00 2.29
2736 2959 7.667219 ACCCTTTTGCTCCTCATATAATATGTG 59.333 37.037 0.00 0.00 0.00 3.21
2737 2960 7.667219 CCCTTTTGCTCCTCATATAATATGTGT 59.333 37.037 0.00 0.00 0.00 3.72
2738 2961 8.509690 CCTTTTGCTCCTCATATAATATGTGTG 58.490 37.037 0.00 0.00 0.00 3.82
2739 2962 8.978874 TTTTGCTCCTCATATAATATGTGTGT 57.021 30.769 0.00 0.00 0.00 3.72
2740 2963 7.967890 TTGCTCCTCATATAATATGTGTGTG 57.032 36.000 0.00 0.00 0.00 3.82
2741 2964 6.466812 TGCTCCTCATATAATATGTGTGTGG 58.533 40.000 0.00 0.25 0.00 4.17
2742 2965 6.269769 TGCTCCTCATATAATATGTGTGTGGA 59.730 38.462 0.00 7.94 0.00 4.02
2743 2966 6.815641 GCTCCTCATATAATATGTGTGTGGAG 59.184 42.308 20.27 20.27 37.43 3.86
2744 2967 7.244886 TCCTCATATAATATGTGTGTGGAGG 57.755 40.000 0.00 0.00 39.56 4.30
2745 2968 6.213397 TCCTCATATAATATGTGTGTGGAGGG 59.787 42.308 0.00 0.00 38.89 4.30
2746 2969 5.804639 TCATATAATATGTGTGTGGAGGGC 58.195 41.667 0.00 0.00 0.00 5.19
2747 2970 5.309282 TCATATAATATGTGTGTGGAGGGCA 59.691 40.000 0.00 0.00 0.00 5.36
2748 2971 2.425143 AATATGTGTGTGGAGGGCAG 57.575 50.000 0.00 0.00 0.00 4.85
2749 2972 1.289160 ATATGTGTGTGGAGGGCAGT 58.711 50.000 0.00 0.00 0.00 4.40
2750 2973 0.324614 TATGTGTGTGGAGGGCAGTG 59.675 55.000 0.00 0.00 0.00 3.66
2751 2974 2.281761 GTGTGTGGAGGGCAGTGG 60.282 66.667 0.00 0.00 0.00 4.00
2752 2975 4.269523 TGTGTGGAGGGCAGTGGC 62.270 66.667 8.47 8.47 40.13 5.01
2753 2976 4.269523 GTGTGGAGGGCAGTGGCA 62.270 66.667 19.48 0.00 43.71 4.92
2754 2977 4.269523 TGTGGAGGGCAGTGGCAC 62.270 66.667 19.48 10.29 46.58 5.01
2766 2989 2.747855 TGGCACACACACGCAACA 60.748 55.556 0.00 0.00 0.00 3.33
2767 2990 2.117779 TGGCACACACACGCAACAT 61.118 52.632 0.00 0.00 0.00 2.71
2768 2991 1.370414 GGCACACACACGCAACATC 60.370 57.895 0.00 0.00 0.00 3.06
2769 2992 1.354858 GCACACACACGCAACATCA 59.645 52.632 0.00 0.00 0.00 3.07
2770 2993 0.658244 GCACACACACGCAACATCAG 60.658 55.000 0.00 0.00 0.00 2.90
2771 2994 0.657312 CACACACACGCAACATCAGT 59.343 50.000 0.00 0.00 0.00 3.41
2772 2995 0.657312 ACACACACGCAACATCAGTG 59.343 50.000 0.00 0.00 41.28 3.66
2777 3000 2.918571 ACGCAACATCAGTGTGAGG 58.081 52.632 0.00 0.00 38.92 3.86
2778 3001 1.230635 ACGCAACATCAGTGTGAGGC 61.231 55.000 0.00 0.00 38.92 4.70
2779 3002 1.878775 GCAACATCAGTGTGAGGCC 59.121 57.895 0.00 0.00 38.92 5.19
2780 3003 0.890542 GCAACATCAGTGTGAGGCCA 60.891 55.000 5.01 0.00 38.92 5.36
2781 3004 1.162698 CAACATCAGTGTGAGGCCAG 58.837 55.000 5.01 0.00 38.92 4.85
2782 3005 0.767375 AACATCAGTGTGAGGCCAGT 59.233 50.000 5.01 0.00 38.92 4.00
2783 3006 1.644509 ACATCAGTGTGAGGCCAGTA 58.355 50.000 5.01 0.00 37.14 2.74
2784 3007 1.552337 ACATCAGTGTGAGGCCAGTAG 59.448 52.381 5.01 0.00 37.14 2.57
2785 3008 0.539051 ATCAGTGTGAGGCCAGTAGC 59.461 55.000 5.01 0.00 42.60 3.58
2786 3009 0.831711 TCAGTGTGAGGCCAGTAGCA 60.832 55.000 5.01 0.00 46.50 3.49
2787 3010 0.671781 CAGTGTGAGGCCAGTAGCAC 60.672 60.000 5.01 6.68 46.50 4.40
2788 3011 1.121407 AGTGTGAGGCCAGTAGCACA 61.121 55.000 5.01 8.40 46.50 4.57
2789 3012 1.371183 TGTGAGGCCAGTAGCACAC 59.629 57.895 5.01 4.13 46.50 3.82
2790 3013 1.371183 GTGAGGCCAGTAGCACACA 59.629 57.895 5.01 0.00 46.50 3.72
2791 3014 0.951040 GTGAGGCCAGTAGCACACAC 60.951 60.000 5.01 0.00 46.50 3.82
2792 3015 1.371183 GAGGCCAGTAGCACACACA 59.629 57.895 5.01 0.00 46.50 3.72
2793 3016 0.036010 GAGGCCAGTAGCACACACAT 60.036 55.000 5.01 0.00 46.50 3.21
2794 3017 1.207089 GAGGCCAGTAGCACACACATA 59.793 52.381 5.01 0.00 46.50 2.29
2795 3018 1.208052 AGGCCAGTAGCACACACATAG 59.792 52.381 5.01 0.00 46.50 2.23
2796 3019 1.009829 GCCAGTAGCACACACATAGC 58.990 55.000 0.00 0.00 42.97 2.97
2797 3020 1.675714 GCCAGTAGCACACACATAGCA 60.676 52.381 0.00 0.00 42.97 3.49
2798 3021 2.698803 CCAGTAGCACACACATAGCAA 58.301 47.619 0.00 0.00 0.00 3.91
2799 3022 2.416547 CCAGTAGCACACACATAGCAAC 59.583 50.000 0.00 0.00 0.00 4.17
2800 3023 3.066380 CAGTAGCACACACATAGCAACA 58.934 45.455 0.00 0.00 0.00 3.33
2801 3024 3.067106 AGTAGCACACACATAGCAACAC 58.933 45.455 0.00 0.00 0.00 3.32
2802 3025 1.965935 AGCACACACATAGCAACACA 58.034 45.000 0.00 0.00 0.00 3.72
2803 3026 2.507484 AGCACACACATAGCAACACAT 58.493 42.857 0.00 0.00 0.00 3.21
2804 3027 3.673902 AGCACACACATAGCAACACATA 58.326 40.909 0.00 0.00 0.00 2.29
2805 3028 4.071423 AGCACACACATAGCAACACATAA 58.929 39.130 0.00 0.00 0.00 1.90
2806 3029 4.518590 AGCACACACATAGCAACACATAAA 59.481 37.500 0.00 0.00 0.00 1.40
2807 3030 4.853196 GCACACACATAGCAACACATAAAG 59.147 41.667 0.00 0.00 0.00 1.85
2808 3031 5.334802 GCACACACATAGCAACACATAAAGA 60.335 40.000 0.00 0.00 0.00 2.52
2809 3032 6.079763 CACACACATAGCAACACATAAAGAC 58.920 40.000 0.00 0.00 0.00 3.01
2810 3033 5.107104 ACACACATAGCAACACATAAAGACG 60.107 40.000 0.00 0.00 0.00 4.18
2811 3034 4.142902 ACACATAGCAACACATAAAGACGC 60.143 41.667 0.00 0.00 0.00 5.19
2812 3035 4.000325 ACATAGCAACACATAAAGACGCA 59.000 39.130 0.00 0.00 0.00 5.24
2813 3036 4.093408 ACATAGCAACACATAAAGACGCAG 59.907 41.667 0.00 0.00 0.00 5.18
2814 3037 1.197721 AGCAACACATAAAGACGCAGC 59.802 47.619 0.00 0.00 0.00 5.25
2815 3038 1.069296 GCAACACATAAAGACGCAGCA 60.069 47.619 0.00 0.00 0.00 4.41
2816 3039 2.604373 GCAACACATAAAGACGCAGCAA 60.604 45.455 0.00 0.00 0.00 3.91
2817 3040 2.969443 ACACATAAAGACGCAGCAAC 57.031 45.000 0.00 0.00 0.00 4.17
2818 3041 1.535462 ACACATAAAGACGCAGCAACC 59.465 47.619 0.00 0.00 0.00 3.77
2819 3042 1.535028 CACATAAAGACGCAGCAACCA 59.465 47.619 0.00 0.00 0.00 3.67
2820 3043 1.535462 ACATAAAGACGCAGCAACCAC 59.465 47.619 0.00 0.00 0.00 4.16
2821 3044 1.535028 CATAAAGACGCAGCAACCACA 59.465 47.619 0.00 0.00 0.00 4.17
2822 3045 0.941542 TAAAGACGCAGCAACCACAC 59.058 50.000 0.00 0.00 0.00 3.82
2823 3046 2.047151 AAAGACGCAGCAACCACACG 62.047 55.000 0.00 0.00 0.00 4.49
2824 3047 4.666532 GACGCAGCAACCACACGC 62.667 66.667 0.00 0.00 0.00 5.34
2826 3049 4.962122 CGCAGCAACCACACGCAC 62.962 66.667 0.00 0.00 0.00 5.34
2827 3050 4.962122 GCAGCAACCACACGCACG 62.962 66.667 0.00 0.00 0.00 5.34
2828 3051 4.962122 CAGCAACCACACGCACGC 62.962 66.667 0.00 0.00 0.00 5.34
2831 3054 3.870422 CAACCACACGCACGCACA 61.870 61.111 0.00 0.00 0.00 4.57
2832 3055 3.871574 AACCACACGCACGCACAC 61.872 61.111 0.00 0.00 0.00 3.82
2834 3057 4.589700 CCACACGCACGCACACAC 62.590 66.667 0.00 0.00 0.00 3.82
2835 3058 3.858989 CACACGCACGCACACACA 61.859 61.111 0.00 0.00 0.00 3.72
2836 3059 3.563088 ACACGCACGCACACACAG 61.563 61.111 0.00 0.00 0.00 3.66
2837 3060 4.943591 CACGCACGCACACACAGC 62.944 66.667 0.00 0.00 0.00 4.40
2839 3062 4.654904 CGCACGCACACACAGCAG 62.655 66.667 0.00 0.00 0.00 4.24
2840 3063 4.969604 GCACGCACACACAGCAGC 62.970 66.667 0.00 0.00 0.00 5.25
2841 3064 3.575400 CACGCACACACAGCAGCA 61.575 61.111 0.00 0.00 0.00 4.41
2842 3065 3.576356 ACGCACACACAGCAGCAC 61.576 61.111 0.00 0.00 0.00 4.40
2843 3066 3.575400 CGCACACACAGCAGCACA 61.575 61.111 0.00 0.00 0.00 4.57
2844 3067 2.025156 GCACACACAGCAGCACAC 59.975 61.111 0.00 0.00 0.00 3.82
2845 3068 2.763273 GCACACACAGCAGCACACA 61.763 57.895 0.00 0.00 0.00 3.72
2846 3069 1.063006 CACACACAGCAGCACACAC 59.937 57.895 0.00 0.00 0.00 3.82
2847 3070 2.325511 CACACAGCAGCACACACG 59.674 61.111 0.00 0.00 0.00 4.49
2848 3071 3.576356 ACACAGCAGCACACACGC 61.576 61.111 0.00 0.00 0.00 5.34
2849 3072 3.575400 CACAGCAGCACACACGCA 61.575 61.111 0.00 0.00 0.00 5.24
2850 3073 3.576356 ACAGCAGCACACACGCAC 61.576 61.111 0.00 0.00 0.00 5.34
2851 3074 4.654904 CAGCAGCACACACGCACG 62.655 66.667 0.00 0.00 0.00 5.34
2854 3077 4.235025 CAGCACACACGCACGCAA 62.235 61.111 0.00 0.00 0.00 4.85
2855 3078 4.236416 AGCACACACGCACGCAAC 62.236 61.111 0.00 0.00 0.00 4.17
2856 3079 4.528740 GCACACACGCACGCAACA 62.529 61.111 0.00 0.00 0.00 3.33
2857 3080 2.647481 CACACACGCACGCAACAC 60.647 61.111 0.00 0.00 0.00 3.32
2858 3081 3.121676 ACACACGCACGCAACACA 61.122 55.556 0.00 0.00 0.00 3.72
2859 3082 2.647481 CACACGCACGCAACACAC 60.647 61.111 0.00 0.00 0.00 3.82
2860 3083 2.817834 ACACGCACGCAACACACT 60.818 55.556 0.00 0.00 0.00 3.55
2861 3084 2.053116 CACGCACGCAACACACTC 60.053 61.111 0.00 0.00 0.00 3.51
2862 3085 2.510464 ACGCACGCAACACACTCA 60.510 55.556 0.00 0.00 0.00 3.41
2863 3086 2.053116 CGCACGCAACACACTCAC 60.053 61.111 0.00 0.00 0.00 3.51
2864 3087 2.807906 CGCACGCAACACACTCACA 61.808 57.895 0.00 0.00 0.00 3.58
2865 3088 1.010797 GCACGCAACACACTCACAG 60.011 57.895 0.00 0.00 0.00 3.66
2866 3089 1.643292 CACGCAACACACTCACAGG 59.357 57.895 0.00 0.00 0.00 4.00
2867 3090 2.180204 ACGCAACACACTCACAGGC 61.180 57.895 0.00 0.00 0.00 4.85
2868 3091 2.179547 CGCAACACACTCACAGGCA 61.180 57.895 0.00 0.00 0.00 4.75
2869 3092 1.650912 GCAACACACTCACAGGCAG 59.349 57.895 0.00 0.00 0.00 4.85
2870 3093 1.650912 CAACACACTCACAGGCAGC 59.349 57.895 0.00 0.00 0.00 5.25
2871 3094 1.096967 CAACACACTCACAGGCAGCA 61.097 55.000 0.00 0.00 0.00 4.41
2872 3095 0.816825 AACACACTCACAGGCAGCAG 60.817 55.000 0.00 0.00 0.00 4.24
2873 3096 2.281345 ACACTCACAGGCAGCAGC 60.281 61.111 0.00 0.00 41.10 5.25
2874 3097 2.281276 CACTCACAGGCAGCAGCA 60.281 61.111 2.65 0.00 44.61 4.41
2875 3098 2.281345 ACTCACAGGCAGCAGCAC 60.281 61.111 2.65 0.00 44.61 4.40
2876 3099 2.281276 CTCACAGGCAGCAGCACA 60.281 61.111 2.65 0.00 44.61 4.57
2877 3100 2.592574 TCACAGGCAGCAGCACAC 60.593 61.111 2.65 0.00 44.61 3.82
2878 3101 2.903350 CACAGGCAGCAGCACACA 60.903 61.111 2.65 0.00 44.61 3.72
2879 3102 2.903855 ACAGGCAGCAGCACACAC 60.904 61.111 2.65 0.00 44.61 3.82
2880 3103 2.903350 CAGGCAGCAGCACACACA 60.903 61.111 2.65 0.00 44.61 3.72
2881 3104 2.903855 AGGCAGCAGCACACACAC 60.904 61.111 2.65 0.00 44.61 3.82
2882 3105 3.211245 GGCAGCAGCACACACACA 61.211 61.111 2.65 0.00 44.61 3.72
2883 3106 2.025156 GCAGCAGCACACACACAC 59.975 61.111 0.00 0.00 41.58 3.82
2884 3107 2.763273 GCAGCAGCACACACACACA 61.763 57.895 0.00 0.00 41.58 3.72
2885 3108 1.063006 CAGCAGCACACACACACAC 59.937 57.895 0.00 0.00 0.00 3.82
2886 3109 2.023181 GCAGCACACACACACACG 59.977 61.111 0.00 0.00 0.00 4.49
2887 3110 2.749865 GCAGCACACACACACACGT 61.750 57.895 0.00 0.00 0.00 4.49
2888 3111 1.425267 GCAGCACACACACACACGTA 61.425 55.000 0.00 0.00 0.00 3.57
2889 3112 0.576798 CAGCACACACACACACGTAG 59.423 55.000 0.00 0.00 0.00 3.51
2890 3113 1.151777 AGCACACACACACACGTAGC 61.152 55.000 0.00 0.00 0.00 3.58
2891 3114 1.425267 GCACACACACACACGTAGCA 61.425 55.000 0.00 0.00 0.00 3.49
2892 3115 0.300491 CACACACACACACGTAGCAC 59.700 55.000 0.00 0.00 0.00 4.40
2893 3116 0.108567 ACACACACACACGTAGCACA 60.109 50.000 0.00 0.00 0.00 4.57
2894 3117 0.300491 CACACACACACGTAGCACAC 59.700 55.000 0.00 0.00 0.00 3.82
2895 3118 0.108567 ACACACACACGTAGCACACA 60.109 50.000 0.00 0.00 0.00 3.72
2896 3119 0.300491 CACACACACGTAGCACACAC 59.700 55.000 0.00 0.00 0.00 3.82
2897 3120 1.143373 ACACACACGTAGCACACACG 61.143 55.000 0.00 0.00 44.80 4.49
2898 3121 2.235016 ACACACGTAGCACACACGC 61.235 57.895 0.00 0.00 43.10 5.34
2899 3122 2.105328 ACACGTAGCACACACGCA 59.895 55.556 0.00 0.00 43.10 5.24
2900 3123 1.949133 ACACGTAGCACACACGCAG 60.949 57.895 0.00 0.00 43.10 5.18
2901 3124 3.036084 ACGTAGCACACACGCAGC 61.036 61.111 0.00 0.00 43.10 5.25
2902 3125 3.035503 CGTAGCACACACGCAGCA 61.036 61.111 0.00 0.00 31.94 4.41
2903 3126 2.856032 GTAGCACACACGCAGCAG 59.144 61.111 0.00 0.00 0.00 4.24
2904 3127 3.043713 TAGCACACACGCAGCAGC 61.044 61.111 0.00 0.00 37.42 5.25
2905 3128 3.805891 TAGCACACACGCAGCAGCA 62.806 57.895 0.82 0.00 42.27 4.41
2906 3129 4.678269 GCACACACGCAGCAGCAG 62.678 66.667 0.82 0.00 42.27 4.24
2907 3130 4.678269 CACACACGCAGCAGCAGC 62.678 66.667 0.82 0.00 42.27 5.25
2909 3132 4.678269 CACACGCAGCAGCAGCAC 62.678 66.667 10.77 0.00 45.49 4.40
2911 3134 3.733960 CACGCAGCAGCAGCACAT 61.734 61.111 10.77 0.00 45.49 3.21
2912 3135 2.046988 ACGCAGCAGCAGCACATA 60.047 55.556 10.77 0.00 45.49 2.29
2913 3136 2.393768 ACGCAGCAGCAGCACATAC 61.394 57.895 10.77 0.00 45.49 2.39
2914 3137 2.796651 GCAGCAGCAGCACATACC 59.203 61.111 4.63 0.00 45.49 2.73
2915 3138 1.748122 GCAGCAGCAGCACATACCT 60.748 57.895 4.63 0.00 45.49 3.08
2916 3139 0.462581 GCAGCAGCAGCACATACCTA 60.463 55.000 4.63 0.00 45.49 3.08
2917 3140 1.579698 CAGCAGCAGCACATACCTAG 58.420 55.000 3.17 0.00 45.49 3.02
2918 3141 0.179062 AGCAGCAGCACATACCTAGC 60.179 55.000 3.17 0.00 45.49 3.42
2919 3142 0.462581 GCAGCAGCACATACCTAGCA 60.463 55.000 0.00 0.00 41.58 3.49
2920 3143 1.579698 CAGCAGCACATACCTAGCAG 58.420 55.000 0.00 0.00 0.00 4.24
2921 3144 0.179062 AGCAGCACATACCTAGCAGC 60.179 55.000 0.00 0.00 40.51 5.25
2922 3145 0.462581 GCAGCACATACCTAGCAGCA 60.463 55.000 0.00 0.00 40.04 4.41
2923 3146 1.579698 CAGCACATACCTAGCAGCAG 58.420 55.000 0.00 0.00 0.00 4.24
2924 3147 0.179062 AGCACATACCTAGCAGCAGC 60.179 55.000 0.00 0.00 42.56 5.25
2934 3157 2.976350 GCAGCAGCTCACAGCACA 60.976 61.111 0.00 0.00 45.56 4.57
2935 3158 2.944429 CAGCAGCTCACAGCACAC 59.056 61.111 0.00 0.00 45.56 3.82
2936 3159 1.890510 CAGCAGCTCACAGCACACA 60.891 57.895 0.00 0.00 45.56 3.72
2937 3160 1.153107 AGCAGCTCACAGCACACAA 60.153 52.632 0.00 0.00 45.56 3.33
2938 3161 1.164662 AGCAGCTCACAGCACACAAG 61.165 55.000 0.00 0.00 45.56 3.16
2939 3162 1.281960 CAGCTCACAGCACACAAGC 59.718 57.895 0.00 0.00 45.56 4.01
2940 3163 1.153107 AGCTCACAGCACACAAGCA 60.153 52.632 0.00 0.00 45.56 3.91
2941 3164 0.536687 AGCTCACAGCACACAAGCAT 60.537 50.000 0.00 0.00 45.56 3.79
2942 3165 0.386858 GCTCACAGCACACAAGCATG 60.387 55.000 0.00 0.00 41.89 4.06
2943 3166 0.386858 CTCACAGCACACAAGCATGC 60.387 55.000 10.51 10.51 42.39 4.06
2944 3167 1.102222 TCACAGCACACAAGCATGCA 61.102 50.000 21.98 0.00 44.59 3.96
2945 3168 0.249114 CACAGCACACAAGCATGCAA 60.249 50.000 21.98 0.00 44.59 4.08
2946 3169 0.460722 ACAGCACACAAGCATGCAAA 59.539 45.000 21.98 0.00 44.59 3.68
2947 3170 0.856641 CAGCACACAAGCATGCAAAC 59.143 50.000 21.98 1.58 44.59 2.93
2948 3171 0.460722 AGCACACAAGCATGCAAACA 59.539 45.000 21.98 0.00 44.59 2.83
2949 3172 1.069513 AGCACACAAGCATGCAAACAT 59.930 42.857 21.98 0.00 44.59 2.71
2950 3173 1.458064 GCACACAAGCATGCAAACATC 59.542 47.619 21.98 0.00 41.65 3.06
2951 3174 2.745102 CACACAAGCATGCAAACATCA 58.255 42.857 21.98 0.00 32.87 3.07
2952 3175 2.473609 CACACAAGCATGCAAACATCAC 59.526 45.455 21.98 0.00 32.87 3.06
2953 3176 2.101082 ACACAAGCATGCAAACATCACA 59.899 40.909 21.98 0.00 32.87 3.58
2954 3177 2.473609 CACAAGCATGCAAACATCACAC 59.526 45.455 21.98 0.00 32.87 3.82
2955 3178 2.101082 ACAAGCATGCAAACATCACACA 59.899 40.909 21.98 0.00 32.87 3.72
2956 3179 2.427232 AGCATGCAAACATCACACAC 57.573 45.000 21.98 0.00 32.87 3.82
2957 3180 1.682323 AGCATGCAAACATCACACACA 59.318 42.857 21.98 0.00 32.87 3.72
2958 3181 1.788308 GCATGCAAACATCACACACAC 59.212 47.619 14.21 0.00 32.87 3.82
2959 3182 2.798853 GCATGCAAACATCACACACACA 60.799 45.455 14.21 0.00 32.87 3.72
2960 3183 2.558265 TGCAAACATCACACACACAC 57.442 45.000 0.00 0.00 0.00 3.82
2961 3184 1.202121 TGCAAACATCACACACACACG 60.202 47.619 0.00 0.00 0.00 4.49
2962 3185 1.202132 GCAAACATCACACACACACGT 60.202 47.619 0.00 0.00 0.00 4.49
2963 3186 2.031068 GCAAACATCACACACACACGTA 59.969 45.455 0.00 0.00 0.00 3.57
2964 3187 3.603379 CAAACATCACACACACACGTAC 58.397 45.455 0.00 0.00 0.00 3.67
2965 3188 2.588027 ACATCACACACACACGTACA 57.412 45.000 0.00 0.00 0.00 2.90
2966 3189 3.106242 ACATCACACACACACGTACAT 57.894 42.857 0.00 0.00 0.00 2.29
2967 3190 4.245845 ACATCACACACACACGTACATA 57.754 40.909 0.00 0.00 0.00 2.29
2968 3191 3.985279 ACATCACACACACACGTACATAC 59.015 43.478 0.00 0.00 0.00 2.39
2980 3203 1.452025 CGTACATACGCATGCACTAGC 59.548 52.381 19.57 0.00 43.14 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 184 2.679342 GGCCTCACAGCATACCCCA 61.679 63.158 0.00 0.00 0.00 4.96
1176 1339 4.221924 GCCCCACTTAAAGCCTTCAAATAA 59.778 41.667 0.00 0.00 0.00 1.40
1341 1507 9.384682 GAAACATCATTATTTTTGGCAAAACTG 57.615 29.630 24.04 17.63 34.63 3.16
1808 1975 2.148916 TGACAGCCTTGTACAAGTCG 57.851 50.000 29.05 20.12 37.76 4.18
2300 2523 2.896685 AGCCTGTATCTGAGGTATGCTC 59.103 50.000 0.00 0.00 32.60 4.26
2395 2618 8.098286 AGTTGTTTGGTAGCAATGTATGTACTA 58.902 33.333 8.40 0.00 0.00 1.82
2514 2737 1.771073 CGTTCGTGCAGCAAAGTCCA 61.771 55.000 0.00 0.00 0.00 4.02
2515 2738 1.082756 CGTTCGTGCAGCAAAGTCC 60.083 57.895 0.00 0.00 0.00 3.85
2517 2740 2.105960 GAGCGTTCGTGCAGCAAAGT 62.106 55.000 0.00 0.00 37.31 2.66
2518 2741 1.439365 GAGCGTTCGTGCAGCAAAG 60.439 57.895 0.00 0.00 37.31 2.77
2519 2742 2.631428 GAGCGTTCGTGCAGCAAA 59.369 55.556 0.00 0.00 37.31 3.68
2520 2743 3.345808 GGAGCGTTCGTGCAGCAA 61.346 61.111 0.00 0.00 37.31 3.91
2521 2744 4.600576 TGGAGCGTTCGTGCAGCA 62.601 61.111 0.00 0.00 37.31 4.41
2522 2745 4.077188 GTGGAGCGTTCGTGCAGC 62.077 66.667 0.00 0.00 37.31 5.25
2523 2746 2.356313 AGTGGAGCGTTCGTGCAG 60.356 61.111 0.00 0.00 37.31 4.41
2524 2747 2.355837 GAGTGGAGCGTTCGTGCA 60.356 61.111 0.00 0.00 37.31 4.57
2525 2748 1.738099 ATGAGTGGAGCGTTCGTGC 60.738 57.895 0.00 0.00 0.00 5.34
2526 2749 1.959899 GCATGAGTGGAGCGTTCGTG 61.960 60.000 0.00 0.00 0.00 4.35
2527 2750 1.738099 GCATGAGTGGAGCGTTCGT 60.738 57.895 0.00 0.00 0.00 3.85
2528 2751 1.086067 ATGCATGAGTGGAGCGTTCG 61.086 55.000 0.00 0.00 0.00 3.95
2529 2752 0.376152 CATGCATGAGTGGAGCGTTC 59.624 55.000 22.59 0.00 0.00 3.95
2530 2753 1.028330 CCATGCATGAGTGGAGCGTT 61.028 55.000 28.31 0.00 37.72 4.84
2531 2754 1.450848 CCATGCATGAGTGGAGCGT 60.451 57.895 28.31 0.00 37.72 5.07
2532 2755 2.184830 CCCATGCATGAGTGGAGCG 61.185 63.158 28.31 8.24 37.72 5.03
2533 2756 1.826921 CCCCATGCATGAGTGGAGC 60.827 63.158 28.31 0.00 37.72 4.70
2534 2757 0.750546 CACCCCATGCATGAGTGGAG 60.751 60.000 28.47 20.14 37.72 3.86
2535 2758 1.206811 TCACCCCATGCATGAGTGGA 61.207 55.000 32.01 22.34 37.72 4.02
2536 2759 0.106369 ATCACCCCATGCATGAGTGG 60.106 55.000 32.01 27.01 34.61 4.00
2537 2760 2.643995 TATCACCCCATGCATGAGTG 57.356 50.000 29.47 29.47 34.93 3.51
2538 2761 4.324797 CCATATATCACCCCATGCATGAGT 60.325 45.833 28.31 20.56 0.00 3.41
2539 2762 4.080186 TCCATATATCACCCCATGCATGAG 60.080 45.833 28.31 19.91 0.00 2.90
2540 2763 3.851374 TCCATATATCACCCCATGCATGA 59.149 43.478 28.31 9.01 0.00 3.07
2541 2764 4.080186 TCTCCATATATCACCCCATGCATG 60.080 45.833 20.19 20.19 0.00 4.06
2542 2765 4.113841 TCTCCATATATCACCCCATGCAT 58.886 43.478 0.00 0.00 0.00 3.96
2543 2766 3.530017 TCTCCATATATCACCCCATGCA 58.470 45.455 0.00 0.00 0.00 3.96
2544 2767 4.574674 TTCTCCATATATCACCCCATGC 57.425 45.455 0.00 0.00 0.00 4.06
2545 2768 5.879763 TGTTTCTCCATATATCACCCCATG 58.120 41.667 0.00 0.00 0.00 3.66
2546 2769 6.529084 TTGTTTCTCCATATATCACCCCAT 57.471 37.500 0.00 0.00 0.00 4.00
2547 2770 5.985175 TTGTTTCTCCATATATCACCCCA 57.015 39.130 0.00 0.00 0.00 4.96
2548 2771 6.434340 GGAATTGTTTCTCCATATATCACCCC 59.566 42.308 0.00 0.00 32.16 4.95
2549 2772 7.234355 AGGAATTGTTTCTCCATATATCACCC 58.766 38.462 0.00 0.00 33.83 4.61
2550 2773 8.697507 AAGGAATTGTTTCTCCATATATCACC 57.302 34.615 0.00 0.00 33.83 4.02
2596 2819 8.938906 GGTATTTAGTGTCAAATAAGGAAACGA 58.061 33.333 0.00 0.00 33.36 3.85
2597 2820 8.943002 AGGTATTTAGTGTCAAATAAGGAAACG 58.057 33.333 0.00 0.00 33.36 3.60
2620 2843 9.280174 TCGTTGTTAGATATGAAAGAAAAAGGT 57.720 29.630 0.00 0.00 0.00 3.50
2621 2844 9.760660 CTCGTTGTTAGATATGAAAGAAAAAGG 57.239 33.333 0.00 0.00 0.00 3.11
2624 2847 9.706691 AGACTCGTTGTTAGATATGAAAGAAAA 57.293 29.630 0.00 0.00 0.00 2.29
2636 2859 9.431887 AGCATAAAATTTAGACTCGTTGTTAGA 57.568 29.630 0.00 0.00 0.00 2.10
2639 2862 9.744468 AAAAGCATAAAATTTAGACTCGTTGTT 57.256 25.926 0.00 0.00 0.00 2.83
2640 2863 9.744468 AAAAAGCATAAAATTTAGACTCGTTGT 57.256 25.926 0.00 0.00 0.00 3.32
2670 2893 9.063615 ATTTAGTCTTAAAATGGACGAAAGTGT 57.936 29.630 0.00 0.00 39.19 3.55
2676 2899 8.938906 GGTGTTATTTAGTCTTAAAATGGACGA 58.061 33.333 0.00 0.00 37.52 4.20
2677 2900 8.943002 AGGTGTTATTTAGTCTTAAAATGGACG 58.057 33.333 0.00 0.00 37.52 4.79
2686 2909 9.498176 GGTCTTTTCAGGTGTTATTTAGTCTTA 57.502 33.333 0.00 0.00 0.00 2.10
2687 2910 7.447545 GGGTCTTTTCAGGTGTTATTTAGTCTT 59.552 37.037 0.00 0.00 0.00 3.01
2688 2911 6.940867 GGGTCTTTTCAGGTGTTATTTAGTCT 59.059 38.462 0.00 0.00 0.00 3.24
2689 2912 6.940867 AGGGTCTTTTCAGGTGTTATTTAGTC 59.059 38.462 0.00 0.00 0.00 2.59
2690 2913 6.849151 AGGGTCTTTTCAGGTGTTATTTAGT 58.151 36.000 0.00 0.00 0.00 2.24
2691 2914 7.761038 AAGGGTCTTTTCAGGTGTTATTTAG 57.239 36.000 0.00 0.00 0.00 1.85
2692 2915 8.417884 CAAAAGGGTCTTTTCAGGTGTTATTTA 58.582 33.333 3.00 0.00 0.00 1.40
2693 2916 7.272244 CAAAAGGGTCTTTTCAGGTGTTATTT 58.728 34.615 3.00 0.00 0.00 1.40
2694 2917 6.685368 GCAAAAGGGTCTTTTCAGGTGTTATT 60.685 38.462 3.00 0.00 0.00 1.40
2695 2918 5.221441 GCAAAAGGGTCTTTTCAGGTGTTAT 60.221 40.000 3.00 0.00 0.00 1.89
2696 2919 4.098807 GCAAAAGGGTCTTTTCAGGTGTTA 59.901 41.667 3.00 0.00 0.00 2.41
2697 2920 3.118775 GCAAAAGGGTCTTTTCAGGTGTT 60.119 43.478 3.00 0.00 0.00 3.32
2698 2921 2.430694 GCAAAAGGGTCTTTTCAGGTGT 59.569 45.455 3.00 0.00 0.00 4.16
2699 2922 2.695147 AGCAAAAGGGTCTTTTCAGGTG 59.305 45.455 3.00 0.00 0.00 4.00
2700 2923 2.959030 GAGCAAAAGGGTCTTTTCAGGT 59.041 45.455 3.00 0.17 40.87 4.00
2701 2924 2.297315 GGAGCAAAAGGGTCTTTTCAGG 59.703 50.000 3.00 0.00 43.58 3.86
2702 2925 3.225940 AGGAGCAAAAGGGTCTTTTCAG 58.774 45.455 3.00 0.00 43.58 3.02
2703 2926 3.222603 GAGGAGCAAAAGGGTCTTTTCA 58.777 45.455 3.00 0.00 43.58 2.69
2704 2927 3.222603 TGAGGAGCAAAAGGGTCTTTTC 58.777 45.455 3.00 0.47 43.58 2.29
2705 2928 3.312736 TGAGGAGCAAAAGGGTCTTTT 57.687 42.857 0.33 0.33 43.58 2.27
2706 2929 3.532641 ATGAGGAGCAAAAGGGTCTTT 57.467 42.857 0.00 0.00 43.58 2.52
2707 2930 4.870021 ATATGAGGAGCAAAAGGGTCTT 57.130 40.909 0.00 0.00 43.58 3.01
2708 2931 5.975988 TTATATGAGGAGCAAAAGGGTCT 57.024 39.130 0.00 0.00 43.58 3.85
2709 2932 7.885399 ACATATTATATGAGGAGCAAAAGGGTC 59.115 37.037 17.95 0.00 43.35 4.46
2710 2933 7.667219 CACATATTATATGAGGAGCAAAAGGGT 59.333 37.037 17.95 0.00 0.00 4.34
2711 2934 7.667219 ACACATATTATATGAGGAGCAAAAGGG 59.333 37.037 17.95 0.00 0.00 3.95
2712 2935 8.509690 CACACATATTATATGAGGAGCAAAAGG 58.490 37.037 17.95 0.00 0.00 3.11
2713 2936 9.060347 ACACACATATTATATGAGGAGCAAAAG 57.940 33.333 17.95 0.61 0.00 2.27
2714 2937 8.839343 CACACACATATTATATGAGGAGCAAAA 58.161 33.333 17.95 0.00 0.00 2.44
2715 2938 7.445096 CCACACACATATTATATGAGGAGCAAA 59.555 37.037 17.95 0.00 0.00 3.68
2716 2939 6.936335 CCACACACATATTATATGAGGAGCAA 59.064 38.462 17.95 0.00 0.00 3.91
2717 2940 6.269769 TCCACACACATATTATATGAGGAGCA 59.730 38.462 17.95 0.00 0.00 4.26
2718 2941 6.701340 TCCACACACATATTATATGAGGAGC 58.299 40.000 17.95 0.00 0.00 4.70
2719 2942 7.326454 CCTCCACACACATATTATATGAGGAG 58.674 42.308 17.95 19.79 38.30 3.69
2720 2943 6.213397 CCCTCCACACACATATTATATGAGGA 59.787 42.308 17.95 13.81 38.30 3.71
2721 2944 6.409704 CCCTCCACACACATATTATATGAGG 58.590 44.000 17.95 11.65 36.32 3.86
2722 2945 5.877012 GCCCTCCACACACATATTATATGAG 59.123 44.000 17.95 12.70 0.00 2.90
2723 2946 5.309282 TGCCCTCCACACACATATTATATGA 59.691 40.000 17.95 0.00 0.00 2.15
2724 2947 5.559770 TGCCCTCCACACACATATTATATG 58.440 41.667 10.37 10.37 0.00 1.78
2725 2948 5.310594 ACTGCCCTCCACACACATATTATAT 59.689 40.000 0.00 0.00 0.00 0.86
2726 2949 4.658435 ACTGCCCTCCACACACATATTATA 59.342 41.667 0.00 0.00 0.00 0.98
2727 2950 3.459598 ACTGCCCTCCACACACATATTAT 59.540 43.478 0.00 0.00 0.00 1.28
2728 2951 2.843730 ACTGCCCTCCACACACATATTA 59.156 45.455 0.00 0.00 0.00 0.98
2729 2952 1.635487 ACTGCCCTCCACACACATATT 59.365 47.619 0.00 0.00 0.00 1.28
2730 2953 1.065199 CACTGCCCTCCACACACATAT 60.065 52.381 0.00 0.00 0.00 1.78
2731 2954 0.324614 CACTGCCCTCCACACACATA 59.675 55.000 0.00 0.00 0.00 2.29
2732 2955 1.073722 CACTGCCCTCCACACACAT 59.926 57.895 0.00 0.00 0.00 3.21
2733 2956 2.510411 CACTGCCCTCCACACACA 59.490 61.111 0.00 0.00 0.00 3.72
2734 2957 2.281761 CCACTGCCCTCCACACAC 60.282 66.667 0.00 0.00 0.00 3.82
2735 2958 4.269523 GCCACTGCCCTCCACACA 62.270 66.667 0.00 0.00 0.00 3.72
2736 2959 4.269523 TGCCACTGCCCTCCACAC 62.270 66.667 0.00 0.00 36.33 3.82
2737 2960 4.269523 GTGCCACTGCCCTCCACA 62.270 66.667 0.00 0.00 36.33 4.17
2738 2961 4.269523 TGTGCCACTGCCCTCCAC 62.270 66.667 0.00 0.00 36.33 4.02
2739 2962 4.269523 GTGTGCCACTGCCCTCCA 62.270 66.667 0.00 0.00 36.33 3.86
2740 2963 4.269523 TGTGTGCCACTGCCCTCC 62.270 66.667 0.00 0.00 35.11 4.30
2741 2964 2.980233 GTGTGTGCCACTGCCCTC 60.980 66.667 0.00 0.00 41.11 4.30
2742 2965 3.807839 TGTGTGTGCCACTGCCCT 61.808 61.111 0.00 0.00 44.81 5.19
2743 2966 3.595758 GTGTGTGTGCCACTGCCC 61.596 66.667 0.00 0.00 44.81 5.36
2744 2967 3.952675 CGTGTGTGTGCCACTGCC 61.953 66.667 0.00 0.00 44.81 4.85
2745 2968 4.612536 GCGTGTGTGTGCCACTGC 62.613 66.667 0.00 1.54 44.81 4.40
2746 2969 2.759123 TTGCGTGTGTGTGCCACTG 61.759 57.895 0.00 0.00 44.81 3.66
2747 2970 2.437537 TTGCGTGTGTGTGCCACT 60.438 55.556 0.00 0.00 44.81 4.00
2748 2971 2.277884 GTTGCGTGTGTGTGCCAC 60.278 61.111 0.00 0.00 44.78 5.01
2749 2972 2.057654 GATGTTGCGTGTGTGTGCCA 62.058 55.000 0.00 0.00 0.00 4.92
2750 2973 1.370414 GATGTTGCGTGTGTGTGCC 60.370 57.895 0.00 0.00 0.00 5.01
2751 2974 0.658244 CTGATGTTGCGTGTGTGTGC 60.658 55.000 0.00 0.00 0.00 4.57
2752 2975 0.657312 ACTGATGTTGCGTGTGTGTG 59.343 50.000 0.00 0.00 0.00 3.82
2753 2976 0.657312 CACTGATGTTGCGTGTGTGT 59.343 50.000 0.00 0.00 0.00 3.72
2754 2977 0.657312 ACACTGATGTTGCGTGTGTG 59.343 50.000 0.00 0.00 40.11 3.82
2755 2978 3.079131 ACACTGATGTTGCGTGTGT 57.921 47.368 0.00 0.00 40.11 3.72
2757 2980 1.220529 CTCACACTGATGTTGCGTGT 58.779 50.000 0.00 0.00 42.14 4.49
2758 2981 0.514255 CCTCACACTGATGTTGCGTG 59.486 55.000 0.00 0.00 36.72 5.34
2759 2982 1.230635 GCCTCACACTGATGTTGCGT 61.231 55.000 0.00 0.00 36.72 5.24
2760 2983 1.499056 GCCTCACACTGATGTTGCG 59.501 57.895 0.00 0.00 36.72 4.85
2761 2984 0.890542 TGGCCTCACACTGATGTTGC 60.891 55.000 3.32 0.00 36.72 4.17
2762 2985 1.162698 CTGGCCTCACACTGATGTTG 58.837 55.000 3.32 0.00 36.72 3.33
2763 2986 0.767375 ACTGGCCTCACACTGATGTT 59.233 50.000 3.32 0.00 36.72 2.71
2764 2987 1.552337 CTACTGGCCTCACACTGATGT 59.448 52.381 3.32 0.00 40.80 3.06
2765 2988 1.741732 GCTACTGGCCTCACACTGATG 60.742 57.143 3.32 0.00 34.27 3.07
2766 2989 0.539051 GCTACTGGCCTCACACTGAT 59.461 55.000 3.32 0.00 34.27 2.90
2767 2990 0.831711 TGCTACTGGCCTCACACTGA 60.832 55.000 3.32 0.00 40.92 3.41
2768 2991 0.671781 GTGCTACTGGCCTCACACTG 60.672 60.000 3.32 0.00 40.92 3.66
2769 2992 1.121407 TGTGCTACTGGCCTCACACT 61.121 55.000 3.32 0.00 40.92 3.55
2770 2993 1.371183 TGTGCTACTGGCCTCACAC 59.629 57.895 3.32 6.16 40.92 3.82
2771 2994 1.371183 GTGTGCTACTGGCCTCACA 59.629 57.895 3.32 7.72 41.09 3.58
2772 2995 0.951040 GTGTGTGCTACTGGCCTCAC 60.951 60.000 3.32 5.07 41.46 3.51
2773 2996 1.371183 GTGTGTGCTACTGGCCTCA 59.629 57.895 3.32 0.00 40.92 3.86
2774 2997 0.036010 ATGTGTGTGCTACTGGCCTC 60.036 55.000 3.32 0.00 40.92 4.70
2775 2998 1.208052 CTATGTGTGTGCTACTGGCCT 59.792 52.381 3.32 0.00 40.92 5.19
2776 2999 1.656652 CTATGTGTGTGCTACTGGCC 58.343 55.000 0.00 0.00 40.92 5.36
2777 3000 1.009829 GCTATGTGTGTGCTACTGGC 58.990 55.000 0.00 0.00 42.22 4.85
2778 3001 2.385013 TGCTATGTGTGTGCTACTGG 57.615 50.000 0.00 0.00 0.00 4.00
2779 3002 3.066380 TGTTGCTATGTGTGTGCTACTG 58.934 45.455 0.00 0.00 34.55 2.74
2780 3003 3.067106 GTGTTGCTATGTGTGTGCTACT 58.933 45.455 0.00 0.00 34.55 2.57
2781 3004 2.805671 TGTGTTGCTATGTGTGTGCTAC 59.194 45.455 0.00 0.00 34.18 3.58
2782 3005 3.118905 TGTGTTGCTATGTGTGTGCTA 57.881 42.857 0.00 0.00 0.00 3.49
2783 3006 1.965935 TGTGTTGCTATGTGTGTGCT 58.034 45.000 0.00 0.00 0.00 4.40
2784 3007 2.995466 ATGTGTTGCTATGTGTGTGC 57.005 45.000 0.00 0.00 0.00 4.57
2785 3008 6.079763 GTCTTTATGTGTTGCTATGTGTGTG 58.920 40.000 0.00 0.00 0.00 3.82
2786 3009 5.107104 CGTCTTTATGTGTTGCTATGTGTGT 60.107 40.000 0.00 0.00 0.00 3.72
2787 3010 5.315982 CGTCTTTATGTGTTGCTATGTGTG 58.684 41.667 0.00 0.00 0.00 3.82
2788 3011 4.142902 GCGTCTTTATGTGTTGCTATGTGT 60.143 41.667 0.00 0.00 0.00 3.72
2789 3012 4.142924 TGCGTCTTTATGTGTTGCTATGTG 60.143 41.667 0.00 0.00 0.00 3.21
2790 3013 4.000325 TGCGTCTTTATGTGTTGCTATGT 59.000 39.130 0.00 0.00 0.00 2.29
2791 3014 4.581493 CTGCGTCTTTATGTGTTGCTATG 58.419 43.478 0.00 0.00 0.00 2.23
2792 3015 3.063997 GCTGCGTCTTTATGTGTTGCTAT 59.936 43.478 0.00 0.00 0.00 2.97
2793 3016 2.415168 GCTGCGTCTTTATGTGTTGCTA 59.585 45.455 0.00 0.00 0.00 3.49
2794 3017 1.197721 GCTGCGTCTTTATGTGTTGCT 59.802 47.619 0.00 0.00 0.00 3.91
2795 3018 1.069296 TGCTGCGTCTTTATGTGTTGC 60.069 47.619 0.00 0.00 0.00 4.17
2796 3019 2.967459 TGCTGCGTCTTTATGTGTTG 57.033 45.000 0.00 0.00 0.00 3.33
2797 3020 2.031157 GGTTGCTGCGTCTTTATGTGTT 60.031 45.455 0.00 0.00 0.00 3.32
2798 3021 1.535462 GGTTGCTGCGTCTTTATGTGT 59.465 47.619 0.00 0.00 0.00 3.72
2799 3022 1.535028 TGGTTGCTGCGTCTTTATGTG 59.465 47.619 0.00 0.00 0.00 3.21
2800 3023 1.535462 GTGGTTGCTGCGTCTTTATGT 59.465 47.619 0.00 0.00 0.00 2.29
2801 3024 1.535028 TGTGGTTGCTGCGTCTTTATG 59.465 47.619 0.00 0.00 0.00 1.90
2802 3025 1.535462 GTGTGGTTGCTGCGTCTTTAT 59.465 47.619 0.00 0.00 0.00 1.40
2803 3026 0.941542 GTGTGGTTGCTGCGTCTTTA 59.058 50.000 0.00 0.00 0.00 1.85
2804 3027 1.727467 GTGTGGTTGCTGCGTCTTT 59.273 52.632 0.00 0.00 0.00 2.52
2805 3028 2.534019 CGTGTGGTTGCTGCGTCTT 61.534 57.895 0.00 0.00 0.00 3.01
2806 3029 2.967076 CGTGTGGTTGCTGCGTCT 60.967 61.111 0.00 0.00 0.00 4.18
2807 3030 4.666532 GCGTGTGGTTGCTGCGTC 62.667 66.667 0.00 0.00 0.00 5.19
2809 3032 4.962122 GTGCGTGTGGTTGCTGCG 62.962 66.667 0.00 0.00 0.00 5.18
2810 3033 4.962122 CGTGCGTGTGGTTGCTGC 62.962 66.667 0.00 0.00 0.00 5.25
2811 3034 4.962122 GCGTGCGTGTGGTTGCTG 62.962 66.667 0.00 0.00 0.00 4.41
2814 3037 3.870422 TGTGCGTGCGTGTGGTTG 61.870 61.111 0.00 0.00 0.00 3.77
2815 3038 3.871574 GTGTGCGTGCGTGTGGTT 61.872 61.111 0.00 0.00 0.00 3.67
2817 3040 4.589700 GTGTGTGCGTGCGTGTGG 62.590 66.667 0.00 0.00 0.00 4.17
2818 3041 3.772000 CTGTGTGTGCGTGCGTGTG 62.772 63.158 0.00 0.00 0.00 3.82
2819 3042 3.563088 CTGTGTGTGCGTGCGTGT 61.563 61.111 0.00 0.00 0.00 4.49
2820 3043 4.943591 GCTGTGTGTGCGTGCGTG 62.944 66.667 0.00 0.00 0.00 5.34
2822 3045 4.654904 CTGCTGTGTGTGCGTGCG 62.655 66.667 0.00 0.00 0.00 5.34
2823 3046 4.969604 GCTGCTGTGTGTGCGTGC 62.970 66.667 0.00 0.00 0.00 5.34
2824 3047 3.575400 TGCTGCTGTGTGTGCGTG 61.575 61.111 0.00 0.00 0.00 5.34
2825 3048 3.576356 GTGCTGCTGTGTGTGCGT 61.576 61.111 0.00 0.00 0.00 5.24
2826 3049 3.575400 TGTGCTGCTGTGTGTGCG 61.575 61.111 0.00 0.00 0.00 5.34
2827 3050 2.025156 GTGTGCTGCTGTGTGTGC 59.975 61.111 0.00 0.00 0.00 4.57
2828 3051 1.063006 GTGTGTGCTGCTGTGTGTG 59.937 57.895 0.00 0.00 0.00 3.82
2829 3052 2.463620 CGTGTGTGCTGCTGTGTGT 61.464 57.895 0.00 0.00 0.00 3.72
2830 3053 2.325511 CGTGTGTGCTGCTGTGTG 59.674 61.111 0.00 0.00 0.00 3.82
2831 3054 3.576356 GCGTGTGTGCTGCTGTGT 61.576 61.111 0.00 0.00 0.00 3.72
2832 3055 3.575400 TGCGTGTGTGCTGCTGTG 61.575 61.111 0.00 0.00 35.36 3.66
2833 3056 3.576356 GTGCGTGTGTGCTGCTGT 61.576 61.111 0.00 0.00 35.36 4.40
2834 3057 4.654904 CGTGCGTGTGTGCTGCTG 62.655 66.667 0.00 0.00 35.36 4.41
2837 3060 4.235025 TTGCGTGCGTGTGTGCTG 62.235 61.111 0.00 0.00 35.36 4.41
2838 3061 4.236416 GTTGCGTGCGTGTGTGCT 62.236 61.111 0.00 0.00 35.36 4.40
2839 3062 4.528740 TGTTGCGTGCGTGTGTGC 62.529 61.111 0.00 0.00 0.00 4.57
2840 3063 2.647481 GTGTTGCGTGCGTGTGTG 60.647 61.111 0.00 0.00 0.00 3.82
2841 3064 3.121676 TGTGTTGCGTGCGTGTGT 61.122 55.556 0.00 0.00 0.00 3.72
2842 3065 2.647481 GTGTGTTGCGTGCGTGTG 60.647 61.111 0.00 0.00 0.00 3.82
2843 3066 2.808958 GAGTGTGTTGCGTGCGTGT 61.809 57.895 0.00 0.00 0.00 4.49
2844 3067 2.053116 GAGTGTGTTGCGTGCGTG 60.053 61.111 0.00 0.00 0.00 5.34
2845 3068 2.510464 TGAGTGTGTTGCGTGCGT 60.510 55.556 0.00 0.00 0.00 5.24
2846 3069 2.053116 GTGAGTGTGTTGCGTGCG 60.053 61.111 0.00 0.00 0.00 5.34
2847 3070 1.010797 CTGTGAGTGTGTTGCGTGC 60.011 57.895 0.00 0.00 0.00 5.34
2848 3071 1.643292 CCTGTGAGTGTGTTGCGTG 59.357 57.895 0.00 0.00 0.00 5.34
2849 3072 2.180204 GCCTGTGAGTGTGTTGCGT 61.180 57.895 0.00 0.00 0.00 5.24
2850 3073 2.109538 CTGCCTGTGAGTGTGTTGCG 62.110 60.000 0.00 0.00 0.00 4.85
2851 3074 1.650912 CTGCCTGTGAGTGTGTTGC 59.349 57.895 0.00 0.00 0.00 4.17
2852 3075 1.096967 TGCTGCCTGTGAGTGTGTTG 61.097 55.000 0.00 0.00 0.00 3.33
2853 3076 0.816825 CTGCTGCCTGTGAGTGTGTT 60.817 55.000 0.00 0.00 0.00 3.32
2854 3077 1.227764 CTGCTGCCTGTGAGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
2855 3078 2.614446 GCTGCTGCCTGTGAGTGTG 61.614 63.158 3.85 0.00 0.00 3.82
2856 3079 2.281345 GCTGCTGCCTGTGAGTGT 60.281 61.111 3.85 0.00 0.00 3.55
2857 3080 2.281276 TGCTGCTGCCTGTGAGTG 60.281 61.111 13.47 0.00 38.71 3.51
2858 3081 2.281345 GTGCTGCTGCCTGTGAGT 60.281 61.111 13.47 0.00 38.71 3.41
2859 3082 2.281276 TGTGCTGCTGCCTGTGAG 60.281 61.111 13.47 0.00 38.71 3.51
2860 3083 2.592574 GTGTGCTGCTGCCTGTGA 60.593 61.111 13.47 0.00 38.71 3.58
2861 3084 2.903350 TGTGTGCTGCTGCCTGTG 60.903 61.111 13.47 0.00 38.71 3.66
2862 3085 2.903855 GTGTGTGCTGCTGCCTGT 60.904 61.111 13.47 0.00 38.71 4.00
2863 3086 2.903350 TGTGTGTGCTGCTGCCTG 60.903 61.111 13.47 0.00 38.71 4.85
2864 3087 2.903855 GTGTGTGTGCTGCTGCCT 60.904 61.111 13.47 0.00 38.71 4.75
2865 3088 3.211245 TGTGTGTGTGCTGCTGCC 61.211 61.111 13.47 5.20 38.71 4.85
2866 3089 2.025156 GTGTGTGTGTGCTGCTGC 59.975 61.111 8.89 8.89 40.20 5.25
2867 3090 1.063006 GTGTGTGTGTGTGCTGCTG 59.937 57.895 0.00 0.00 0.00 4.41
2868 3091 2.463620 CGTGTGTGTGTGTGCTGCT 61.464 57.895 0.00 0.00 0.00 4.24
2869 3092 1.425267 TACGTGTGTGTGTGTGCTGC 61.425 55.000 0.00 0.00 0.00 5.25
2870 3093 0.576798 CTACGTGTGTGTGTGTGCTG 59.423 55.000 0.00 0.00 0.00 4.41
2871 3094 1.151777 GCTACGTGTGTGTGTGTGCT 61.152 55.000 0.00 0.00 0.00 4.40
2872 3095 1.275657 GCTACGTGTGTGTGTGTGC 59.724 57.895 0.00 0.00 0.00 4.57
2873 3096 0.300491 GTGCTACGTGTGTGTGTGTG 59.700 55.000 0.00 0.00 0.00 3.82
2874 3097 0.108567 TGTGCTACGTGTGTGTGTGT 60.109 50.000 0.00 0.00 0.00 3.72
2875 3098 0.300491 GTGTGCTACGTGTGTGTGTG 59.700 55.000 0.00 0.00 0.00 3.82
2876 3099 0.108567 TGTGTGCTACGTGTGTGTGT 60.109 50.000 0.00 0.00 0.00 3.72
2877 3100 0.300491 GTGTGTGCTACGTGTGTGTG 59.700 55.000 0.00 0.00 0.00 3.82
2878 3101 1.143373 CGTGTGTGCTACGTGTGTGT 61.143 55.000 0.00 0.00 36.83 3.72
2879 3102 1.557907 CGTGTGTGCTACGTGTGTG 59.442 57.895 0.00 0.00 36.83 3.82
2880 3103 2.235016 GCGTGTGTGCTACGTGTGT 61.235 57.895 0.00 0.00 43.09 3.72
2881 3104 2.146005 CTGCGTGTGTGCTACGTGTG 62.146 60.000 0.00 0.00 43.09 3.82
2882 3105 1.949133 CTGCGTGTGTGCTACGTGT 60.949 57.895 0.00 0.00 43.09 4.49
2883 3106 2.846224 CTGCGTGTGTGCTACGTG 59.154 61.111 0.00 0.00 43.09 4.49
2884 3107 3.036084 GCTGCGTGTGTGCTACGT 61.036 61.111 0.00 0.00 43.09 3.57
2885 3108 3.003568 CTGCTGCGTGTGTGCTACG 62.004 63.158 0.00 0.00 43.93 3.51
2886 3109 2.856032 CTGCTGCGTGTGTGCTAC 59.144 61.111 0.00 0.00 35.36 3.58
2887 3110 3.043713 GCTGCTGCGTGTGTGCTA 61.044 61.111 0.00 0.00 35.36 3.49
2889 3112 4.678269 CTGCTGCTGCGTGTGTGC 62.678 66.667 11.21 0.00 43.34 4.57
2890 3113 4.678269 GCTGCTGCTGCGTGTGTG 62.678 66.667 15.65 0.00 43.34 3.82
2892 3115 4.678269 GTGCTGCTGCTGCGTGTG 62.678 66.667 23.38 2.65 43.34 3.82
2894 3117 2.392974 TATGTGCTGCTGCTGCGTG 61.393 57.895 23.38 7.48 43.34 5.34
2895 3118 2.046988 TATGTGCTGCTGCTGCGT 60.047 55.556 23.38 15.37 43.34 5.24
2896 3119 2.402388 GTATGTGCTGCTGCTGCG 59.598 61.111 23.38 7.03 43.34 5.18
2897 3120 0.462581 TAGGTATGTGCTGCTGCTGC 60.463 55.000 22.51 22.51 40.48 5.25
2898 3121 1.579698 CTAGGTATGTGCTGCTGCTG 58.420 55.000 17.00 0.77 40.48 4.41
2899 3122 0.179062 GCTAGGTATGTGCTGCTGCT 60.179 55.000 17.00 0.00 40.48 4.24
2900 3123 0.462581 TGCTAGGTATGTGCTGCTGC 60.463 55.000 8.89 8.89 40.20 5.25
2901 3124 1.579698 CTGCTAGGTATGTGCTGCTG 58.420 55.000 0.00 0.00 0.00 4.41
2902 3125 0.179062 GCTGCTAGGTATGTGCTGCT 60.179 55.000 0.00 0.00 44.40 4.24
2903 3126 0.462581 TGCTGCTAGGTATGTGCTGC 60.463 55.000 0.00 8.67 46.71 5.25
2904 3127 1.579698 CTGCTGCTAGGTATGTGCTG 58.420 55.000 0.00 0.00 0.00 4.41
2905 3128 0.179062 GCTGCTGCTAGGTATGTGCT 60.179 55.000 8.53 0.00 36.03 4.40
2906 3129 2.315246 GCTGCTGCTAGGTATGTGC 58.685 57.895 8.53 0.00 36.03 4.57
2917 3140 2.976350 TGTGCTGTGAGCTGCTGC 60.976 61.111 7.01 7.62 42.97 5.25
2918 3141 1.441732 TTGTGTGCTGTGAGCTGCTG 61.442 55.000 7.01 0.00 42.97 4.41
2919 3142 1.153107 TTGTGTGCTGTGAGCTGCT 60.153 52.632 0.00 0.00 42.97 4.24
2920 3143 1.281960 CTTGTGTGCTGTGAGCTGC 59.718 57.895 0.00 0.00 42.97 5.25
2921 3144 1.281960 GCTTGTGTGCTGTGAGCTG 59.718 57.895 0.00 0.00 42.97 4.24
2922 3145 0.536687 ATGCTTGTGTGCTGTGAGCT 60.537 50.000 0.00 0.00 42.97 4.09
2923 3146 0.386858 CATGCTTGTGTGCTGTGAGC 60.387 55.000 0.00 0.00 42.82 4.26
2924 3147 0.386858 GCATGCTTGTGTGCTGTGAG 60.387 55.000 11.37 0.00 38.30 3.51
2925 3148 1.102222 TGCATGCTTGTGTGCTGTGA 61.102 50.000 20.33 0.00 41.78 3.58
2926 3149 0.249114 TTGCATGCTTGTGTGCTGTG 60.249 50.000 20.33 0.00 41.78 3.66
2927 3150 0.460722 TTTGCATGCTTGTGTGCTGT 59.539 45.000 20.33 0.00 41.78 4.40
2928 3151 0.856641 GTTTGCATGCTTGTGTGCTG 59.143 50.000 20.33 0.00 41.78 4.41
2929 3152 0.460722 TGTTTGCATGCTTGTGTGCT 59.539 45.000 20.33 0.00 41.78 4.40
2930 3153 1.458064 GATGTTTGCATGCTTGTGTGC 59.542 47.619 20.33 2.94 41.61 4.57
2931 3154 2.473609 GTGATGTTTGCATGCTTGTGTG 59.526 45.455 20.33 0.00 35.07 3.82
2932 3155 2.101082 TGTGATGTTTGCATGCTTGTGT 59.899 40.909 20.33 2.02 35.07 3.72
2933 3156 2.473609 GTGTGATGTTTGCATGCTTGTG 59.526 45.455 20.33 0.00 35.07 3.33
2934 3157 2.101082 TGTGTGATGTTTGCATGCTTGT 59.899 40.909 20.33 0.06 35.07 3.16
2935 3158 2.473609 GTGTGTGATGTTTGCATGCTTG 59.526 45.455 20.33 0.00 35.07 4.01
2936 3159 2.101082 TGTGTGTGATGTTTGCATGCTT 59.899 40.909 20.33 0.00 35.07 3.91
2937 3160 1.682323 TGTGTGTGATGTTTGCATGCT 59.318 42.857 20.33 0.00 35.07 3.79
2938 3161 1.788308 GTGTGTGTGATGTTTGCATGC 59.212 47.619 11.82 11.82 35.07 4.06
2939 3162 2.790448 GTGTGTGTGTGATGTTTGCATG 59.210 45.455 0.00 0.00 35.07 4.06
2940 3163 2.541383 CGTGTGTGTGTGATGTTTGCAT 60.541 45.455 0.00 0.00 38.18 3.96
2941 3164 1.202121 CGTGTGTGTGTGATGTTTGCA 60.202 47.619 0.00 0.00 0.00 4.08
2942 3165 1.202132 ACGTGTGTGTGTGATGTTTGC 60.202 47.619 0.00 0.00 0.00 3.68
2943 3166 2.823196 ACGTGTGTGTGTGATGTTTG 57.177 45.000 0.00 0.00 0.00 2.93
2944 3167 3.263261 TGTACGTGTGTGTGTGATGTTT 58.737 40.909 0.00 0.00 0.00 2.83
2945 3168 2.894902 TGTACGTGTGTGTGTGATGTT 58.105 42.857 0.00 0.00 0.00 2.71
2946 3169 2.588027 TGTACGTGTGTGTGTGATGT 57.412 45.000 0.00 0.00 0.00 3.06
2947 3170 3.058913 CGTATGTACGTGTGTGTGTGATG 59.941 47.826 0.00 0.00 44.13 3.07
2948 3171 3.239254 CGTATGTACGTGTGTGTGTGAT 58.761 45.455 0.00 0.00 44.13 3.06
2949 3172 2.652795 CGTATGTACGTGTGTGTGTGA 58.347 47.619 0.00 0.00 44.13 3.58
2961 3184 2.469826 TGCTAGTGCATGCGTATGTAC 58.530 47.619 23.27 23.27 46.42 2.90
2962 3185 2.880963 TGCTAGTGCATGCGTATGTA 57.119 45.000 14.09 7.84 45.31 2.29
2963 3186 3.758715 TGCTAGTGCATGCGTATGT 57.241 47.368 14.09 0.00 45.31 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.