Multiple sequence alignment - TraesCS7A01G414600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G414600 chr7A 100.000 5634 0 0 1 5634 605772066 605777699 0.000000e+00 10405
1 TraesCS7A01G414600 chr7D 95.081 3273 120 18 1761 5018 525377101 525380347 0.000000e+00 5114
2 TraesCS7A01G414600 chr7D 95.000 1720 42 21 1 1698 525375392 525377089 0.000000e+00 2660
3 TraesCS7A01G414600 chr7D 94.062 320 18 1 5025 5344 525485981 525486299 8.490000e-133 484
4 TraesCS7A01G414600 chr7D 87.043 301 20 13 5352 5634 525504012 525504311 7.040000e-84 322
5 TraesCS7A01G414600 chr7B 96.016 2711 78 13 2327 5022 561750773 561753468 0.000000e+00 4381
6 TraesCS7A01G414600 chr7B 93.271 1724 68 25 1 1698 561748325 561750026 0.000000e+00 2497
7 TraesCS7A01G414600 chr7B 90.132 608 41 9 1727 2328 561750020 561750614 0.000000e+00 773
8 TraesCS7A01G414600 chr7B 95.276 254 10 2 5020 5272 561753924 561754176 8.790000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G414600 chr7A 605772066 605777699 5633 False 10405 10405 100.00000 1 5634 1 chr7A.!!$F1 5633
1 TraesCS7A01G414600 chr7D 525375392 525380347 4955 False 3887 5114 95.04050 1 5018 2 chr7D.!!$F3 5017
2 TraesCS7A01G414600 chr7B 561748325 561754176 5851 False 2013 4381 93.67375 1 5272 4 chr7B.!!$F1 5271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 442 1.531602 GGTTCCTGCCCTGCTTGTT 60.532 57.895 0.0 0.0 0.00 2.83 F
527 553 2.751436 CCACGCCATCCTGTTGGG 60.751 66.667 0.0 0.0 37.24 4.12 F
1941 1993 0.178767 TGATCGACATGCTTCCCAGG 59.821 55.000 0.0 0.0 0.00 4.45 F
2162 2214 0.609131 AAGCCACCCTTGTCCATTCG 60.609 55.000 0.0 0.0 30.99 3.34 F
2163 2215 1.002624 GCCACCCTTGTCCATTCGA 60.003 57.895 0.0 0.0 0.00 3.71 F
2882 3097 1.322442 GCTTGCTTCTTTCAGTGGGT 58.678 50.000 0.0 0.0 0.00 4.51 F
3854 4070 1.176527 CATCAATGCCCTCCACGTTT 58.823 50.000 0.0 0.0 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1761 0.457681 GAGGAGAGAGTGAAGTGCGC 60.458 60.000 0.0 0.0 0.00 6.09 R
2145 2197 0.608035 TTCGAATGGACAAGGGTGGC 60.608 55.000 0.0 0.0 0.00 5.01 R
2925 3140 0.037512 CTCTGTGAGGTGTCAGCCAG 60.038 60.000 0.0 0.0 31.53 4.85 R
3587 3803 0.963355 TGGGGAGGAAAAATTCGGCG 60.963 55.000 0.0 0.0 0.00 6.46 R
3588 3804 1.136891 CATGGGGAGGAAAAATTCGGC 59.863 52.381 0.0 0.0 0.00 5.54 R
4551 4771 1.542492 ATGAGCCACCTGCAAAAGAG 58.458 50.000 0.0 0.0 44.83 2.85 R
5348 6039 0.034756 TATCGGCATCCCAATCACGG 59.965 55.000 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
393 418 3.589881 GGCATCGCATGTCCCTGC 61.590 66.667 0.00 0.00 38.81 4.85
417 442 1.531602 GGTTCCTGCCCTGCTTGTT 60.532 57.895 0.00 0.00 0.00 2.83
454 479 7.118390 AGTGTACTTTGCATCTCTATTTGTGAC 59.882 37.037 0.00 0.00 0.00 3.67
491 517 2.899900 CGGTCAGGATTATCCAGATCCA 59.100 50.000 14.30 0.00 44.50 3.41
527 553 2.751436 CCACGCCATCCTGTTGGG 60.751 66.667 0.00 0.00 37.24 4.12
572 598 4.125703 CCTCATCTGGCTGAGAAATACAC 58.874 47.826 3.97 0.00 44.48 2.90
695 729 7.184067 CCCCCTATCCAGTAGTATGAATTAC 57.816 44.000 0.00 0.00 0.00 1.89
1690 1742 3.187700 CGAGGCTACAATGTCAAGGTAC 58.812 50.000 0.00 0.00 0.00 3.34
1692 1744 4.434520 GAGGCTACAATGTCAAGGTACTC 58.565 47.826 0.00 0.00 38.49 2.59
1693 1745 3.197983 AGGCTACAATGTCAAGGTACTCC 59.802 47.826 0.00 0.00 38.49 3.85
1723 1775 3.832171 CGCGCGCACTTCACTCTC 61.832 66.667 32.61 0.00 0.00 3.20
1724 1776 2.431601 GCGCGCACTTCACTCTCT 60.432 61.111 29.10 0.00 0.00 3.10
1725 1777 2.440569 GCGCGCACTTCACTCTCTC 61.441 63.158 29.10 0.00 0.00 3.20
1743 1795 4.085733 CTCTCCTCTTCCACTCTCTTTCA 58.914 47.826 0.00 0.00 0.00 2.69
1914 1966 2.358582 GGCTCTAGTTAGAAGGGACGAC 59.641 54.545 0.00 0.00 0.00 4.34
1915 1967 2.358582 GCTCTAGTTAGAAGGGACGACC 59.641 54.545 0.00 0.00 40.67 4.79
1938 1990 0.179000 AGGTGATCGACATGCTTCCC 59.821 55.000 0.00 0.00 0.00 3.97
1941 1993 0.178767 TGATCGACATGCTTCCCAGG 59.821 55.000 0.00 0.00 0.00 4.45
1974 2026 1.167851 CTGTTGGCGATGTTGGTGAT 58.832 50.000 0.00 0.00 0.00 3.06
2113 2165 1.003696 GCAAGGCTTTCCAGGTACTCT 59.996 52.381 0.00 0.00 34.60 3.24
2118 2170 3.008485 AGGCTTTCCAGGTACTCTTTCTG 59.992 47.826 0.00 0.00 34.60 3.02
2127 2179 7.186972 TCCAGGTACTCTTTCTGACCTTAATA 58.813 38.462 0.00 0.00 40.41 0.98
2128 2180 7.676893 TCCAGGTACTCTTTCTGACCTTAATAA 59.323 37.037 0.00 0.00 40.41 1.40
2129 2181 8.487028 CCAGGTACTCTTTCTGACCTTAATAAT 58.513 37.037 0.00 0.00 40.41 1.28
2152 2204 6.388619 TTTTCTAATCTTAGAAGCCACCCT 57.611 37.500 11.17 0.00 46.84 4.34
2153 2205 6.388619 TTTCTAATCTTAGAAGCCACCCTT 57.611 37.500 11.17 0.00 46.84 3.95
2154 2206 5.359194 TCTAATCTTAGAAGCCACCCTTG 57.641 43.478 0.00 0.00 36.88 3.61
2162 2214 0.609131 AAGCCACCCTTGTCCATTCG 60.609 55.000 0.00 0.00 30.99 3.34
2163 2215 1.002624 GCCACCCTTGTCCATTCGA 60.003 57.895 0.00 0.00 0.00 3.71
2171 2223 4.225267 ACCCTTGTCCATTCGAAAGTAGAT 59.775 41.667 0.00 0.00 0.00 1.98
2196 2248 8.856153 TGCTGTTTTAGGATAAATGTAGTCAA 57.144 30.769 0.00 0.00 0.00 3.18
2504 2719 4.944317 GCCTATGCTTCTGGTTCTAGTTTT 59.056 41.667 0.00 0.00 33.53 2.43
2522 2737 4.271049 AGTTTTGATGAAGGTATCGATGCG 59.729 41.667 8.54 0.00 0.00 4.73
2534 2749 3.951979 ATCGATGCGTCCTTTGAATTC 57.048 42.857 0.00 0.00 0.00 2.17
2765 2980 8.734763 ACCCTAGACAGGTATTAAGATCTCTTA 58.265 37.037 0.00 0.00 40.79 2.10
2783 2998 9.980780 GATCTCTTACAATTTTCTTAACAGCTC 57.019 33.333 0.00 0.00 0.00 4.09
2785 3000 7.390718 TCTCTTACAATTTTCTTAACAGCTCCC 59.609 37.037 0.00 0.00 0.00 4.30
2786 3001 7.001674 TCTTACAATTTTCTTAACAGCTCCCA 58.998 34.615 0.00 0.00 0.00 4.37
2787 3002 5.712152 ACAATTTTCTTAACAGCTCCCAG 57.288 39.130 0.00 0.00 0.00 4.45
2788 3003 5.385198 ACAATTTTCTTAACAGCTCCCAGA 58.615 37.500 0.00 0.00 0.00 3.86
2790 3005 6.494835 ACAATTTTCTTAACAGCTCCCAGATT 59.505 34.615 0.00 0.00 0.00 2.40
2791 3006 5.964958 TTTTCTTAACAGCTCCCAGATTG 57.035 39.130 0.00 0.00 0.00 2.67
2798 3013 3.771216 ACAGCTCCCAGATTGTTGAAAT 58.229 40.909 0.00 0.00 0.00 2.17
2815 3030 5.723492 TGAAATATCTTGACGCATCACAG 57.277 39.130 0.00 0.00 33.38 3.66
2822 3037 2.238942 TGACGCATCACAGTGAACTT 57.761 45.000 7.50 0.00 0.00 2.66
2826 3041 1.603802 CGCATCACAGTGAACTTGGTT 59.396 47.619 7.50 0.00 0.00 3.67
2827 3042 2.805671 CGCATCACAGTGAACTTGGTTA 59.194 45.455 7.50 0.00 0.00 2.85
2831 3046 5.411361 GCATCACAGTGAACTTGGTTACATA 59.589 40.000 7.50 0.00 0.00 2.29
2834 3049 6.764379 TCACAGTGAACTTGGTTACATATCA 58.236 36.000 0.00 0.00 0.00 2.15
2842 3057 9.295825 TGAACTTGGTTACATATCAATTCTGTT 57.704 29.630 0.00 0.00 0.00 3.16
2882 3097 1.322442 GCTTGCTTCTTTCAGTGGGT 58.678 50.000 0.00 0.00 0.00 4.51
2925 3140 4.894784 TGTTATTCTTGAGACTGGTCCAC 58.105 43.478 0.00 0.00 0.00 4.02
2939 3154 1.459348 TCCACTGGCTGACACCTCA 60.459 57.895 0.00 0.00 0.00 3.86
3053 3268 1.667212 TGCATGTTAGCAAGCGATGAG 59.333 47.619 2.36 0.00 41.71 2.90
3068 3283 3.604772 GCGATGAGCGTACAATTTGATCC 60.605 47.826 2.79 0.00 43.41 3.36
3070 3285 3.342377 TGAGCGTACAATTTGATCCCA 57.658 42.857 2.79 0.00 0.00 4.37
3285 3500 6.422223 CATTAAATTGGCGTCTTAGCTACTG 58.578 40.000 0.00 0.00 37.29 2.74
3564 3780 1.771255 CCCATGGCTTAGCTACTTCCT 59.229 52.381 6.09 0.00 0.00 3.36
3588 3804 8.958043 CCTCTTTTCTTTGTAATTCTTGTTTCG 58.042 33.333 0.00 0.00 0.00 3.46
3594 3810 5.365403 TTGTAATTCTTGTTTCGCCGAAT 57.635 34.783 0.00 0.00 0.00 3.34
3851 4067 1.683943 AATCATCAATGCCCTCCACG 58.316 50.000 0.00 0.00 0.00 4.94
3854 4070 1.176527 CATCAATGCCCTCCACGTTT 58.823 50.000 0.00 0.00 0.00 3.60
3930 4146 1.915078 GCCTGGTCCACTGCAGGTAT 61.915 60.000 19.93 0.00 37.17 2.73
3968 4184 4.706962 ACAGCTGAAATTCCACCCTATTTC 59.293 41.667 23.35 0.00 39.86 2.17
3980 4196 6.315714 TCCACCCTATTTCCAACAACATAAA 58.684 36.000 0.00 0.00 0.00 1.40
4069 4285 7.122948 TGAAGTGTTAGGTGTGTTAAAATGGTT 59.877 33.333 0.00 0.00 0.00 3.67
4183 4399 6.803320 GTGAAATATCATGGACCATAATTGCG 59.197 38.462 6.67 0.00 38.01 4.85
4316 4532 9.705290 ACAAAAGTTTTGATGTAAGACTTGTTT 57.295 25.926 30.20 3.65 41.36 2.83
4396 4614 2.765699 ACTGTTTGCCATGAACCACTTT 59.234 40.909 0.00 0.00 0.00 2.66
4397 4615 3.197549 ACTGTTTGCCATGAACCACTTTT 59.802 39.130 0.00 0.00 0.00 2.27
4408 4626 6.038271 CCATGAACCACTTTTAGGTATGCTAC 59.962 42.308 0.00 0.00 38.76 3.58
4458 4676 9.419297 TGAACTGTATGAACTTGTAAGTCATAC 57.581 33.333 22.94 22.94 42.44 2.39
4551 4771 8.233692 TGTGTGTGTAAAACTGATTTTTGTTC 57.766 30.769 0.00 0.00 37.96 3.18
4612 4832 4.212716 ACTATCTTACACCGGCACTATCA 58.787 43.478 0.00 0.00 0.00 2.15
4680 4900 6.437094 GTCGTAATGTGTATACTCTTCCTCC 58.563 44.000 4.17 0.00 0.00 4.30
4714 4934 6.721318 ACATGTTTTCCTCATAGAAGCCTTA 58.279 36.000 0.00 0.00 0.00 2.69
4844 5064 4.774726 TCTCCTCTGAGAATGTAAGCTTGT 59.225 41.667 9.86 0.00 44.62 3.16
4872 5092 2.616842 TCAGCAAAACGAGGAAGAAACC 59.383 45.455 0.00 0.00 0.00 3.27
5033 5724 6.595716 GCATAAGTGTTAAGAGATTGTGGTCT 59.404 38.462 0.00 0.00 0.00 3.85
5046 5737 6.987386 AGATTGTGGTCTATGTCTACTATGC 58.013 40.000 0.00 0.00 0.00 3.14
5072 5763 5.601583 TTCTATCGGTGCTTATAACCACA 57.398 39.130 11.96 0.00 37.57 4.17
5084 5775 5.801947 GCTTATAACCACAACAAATGCTCAG 59.198 40.000 0.00 0.00 0.00 3.35
5096 5787 0.842635 ATGCTCAGATCCCCCTGTTC 59.157 55.000 0.00 0.00 35.71 3.18
5118 5809 5.207354 TCTCTCCATTGAGCAACTCTAGAT 58.793 41.667 0.00 0.00 38.58 1.98
5152 5843 3.231818 CTTCTCCCCTACACCGTCATAT 58.768 50.000 0.00 0.00 0.00 1.78
5238 5929 4.899457 TCTAATGTGTCATCCCGAATACCT 59.101 41.667 0.00 0.00 0.00 3.08
5242 5933 1.760613 TGTCATCCCGAATACCTCCAC 59.239 52.381 0.00 0.00 0.00 4.02
5275 5966 5.830912 CACAAACTGTTCATATGTGTTGGT 58.169 37.500 12.62 5.48 37.27 3.67
5276 5967 5.914635 CACAAACTGTTCATATGTGTTGGTC 59.085 40.000 12.62 0.00 37.27 4.02
5277 5968 5.009610 ACAAACTGTTCATATGTGTTGGTCC 59.990 40.000 1.90 0.00 0.00 4.46
5278 5969 3.686016 ACTGTTCATATGTGTTGGTCCC 58.314 45.455 1.90 0.00 0.00 4.46
5279 5970 3.073798 ACTGTTCATATGTGTTGGTCCCA 59.926 43.478 1.90 0.00 0.00 4.37
5280 5971 3.417101 TGTTCATATGTGTTGGTCCCAC 58.583 45.455 1.90 0.00 0.00 4.61
5281 5972 2.394930 TCATATGTGTTGGTCCCACG 57.605 50.000 1.90 0.00 35.56 4.94
5282 5973 0.732571 CATATGTGTTGGTCCCACGC 59.267 55.000 0.00 0.00 35.56 5.34
5283 5974 0.326595 ATATGTGTTGGTCCCACGCA 59.673 50.000 11.45 11.45 35.56 5.24
5284 5975 0.326595 TATGTGTTGGTCCCACGCAT 59.673 50.000 21.93 21.93 38.09 4.73
5285 5976 0.960364 ATGTGTTGGTCCCACGCATC 60.960 55.000 14.79 0.00 35.56 3.91
5286 5977 1.599518 GTGTTGGTCCCACGCATCA 60.600 57.895 1.81 0.00 0.00 3.07
5287 5978 0.960364 GTGTTGGTCCCACGCATCAT 60.960 55.000 1.81 0.00 0.00 2.45
5288 5979 0.615850 TGTTGGTCCCACGCATCATA 59.384 50.000 0.00 0.00 0.00 2.15
5289 5980 1.014352 GTTGGTCCCACGCATCATAC 58.986 55.000 0.00 0.00 0.00 2.39
5290 5981 0.615850 TTGGTCCCACGCATCATACA 59.384 50.000 0.00 0.00 0.00 2.29
5291 5982 0.836606 TGGTCCCACGCATCATACAT 59.163 50.000 0.00 0.00 0.00 2.29
5292 5983 2.043227 TGGTCCCACGCATCATACATA 58.957 47.619 0.00 0.00 0.00 2.29
5293 5984 2.637382 TGGTCCCACGCATCATACATAT 59.363 45.455 0.00 0.00 0.00 1.78
5294 5985 3.835395 TGGTCCCACGCATCATACATATA 59.165 43.478 0.00 0.00 0.00 0.86
5295 5986 4.284746 TGGTCCCACGCATCATACATATAA 59.715 41.667 0.00 0.00 0.00 0.98
5296 5987 5.045942 TGGTCCCACGCATCATACATATAAT 60.046 40.000 0.00 0.00 0.00 1.28
5297 5988 6.155393 TGGTCCCACGCATCATACATATAATA 59.845 38.462 0.00 0.00 0.00 0.98
5298 5989 7.045416 GGTCCCACGCATCATACATATAATAA 58.955 38.462 0.00 0.00 0.00 1.40
5299 5990 7.224753 GGTCCCACGCATCATACATATAATAAG 59.775 40.741 0.00 0.00 0.00 1.73
5300 5991 7.979537 GTCCCACGCATCATACATATAATAAGA 59.020 37.037 0.00 0.00 0.00 2.10
5301 5992 8.536175 TCCCACGCATCATACATATAATAAGAA 58.464 33.333 0.00 0.00 0.00 2.52
5302 5993 9.161629 CCCACGCATCATACATATAATAAGAAA 57.838 33.333 0.00 0.00 0.00 2.52
5320 6011 5.850046 AGAAATACAGGGGATATCAAGGG 57.150 43.478 4.83 0.00 0.00 3.95
5321 6012 5.486332 AGAAATACAGGGGATATCAAGGGA 58.514 41.667 4.83 0.00 0.00 4.20
5322 6013 5.917087 AGAAATACAGGGGATATCAAGGGAA 59.083 40.000 4.83 0.00 0.00 3.97
5323 6014 6.392842 AGAAATACAGGGGATATCAAGGGAAA 59.607 38.462 4.83 0.00 0.00 3.13
5324 6015 3.953542 ACAGGGGATATCAAGGGAAAC 57.046 47.619 4.83 0.00 0.00 2.78
5342 6033 6.921486 GGAAACCAAGTATAAAAGGGGAAA 57.079 37.500 0.00 0.00 0.00 3.13
5343 6034 6.931838 GGAAACCAAGTATAAAAGGGGAAAG 58.068 40.000 0.00 0.00 0.00 2.62
5344 6035 6.070995 GGAAACCAAGTATAAAAGGGGAAAGG 60.071 42.308 0.00 0.00 0.00 3.11
5345 6036 4.942944 ACCAAGTATAAAAGGGGAAAGGG 58.057 43.478 0.00 0.00 0.00 3.95
5346 6037 4.264668 ACCAAGTATAAAAGGGGAAAGGGG 60.265 45.833 0.00 0.00 0.00 4.79
5347 6038 3.682592 AGTATAAAAGGGGAAAGGGGC 57.317 47.619 0.00 0.00 0.00 5.80
5348 6039 2.246588 AGTATAAAAGGGGAAAGGGGCC 59.753 50.000 0.00 0.00 0.00 5.80
5349 6040 0.341961 ATAAAAGGGGAAAGGGGCCC 59.658 55.000 17.12 17.12 45.25 5.80
5354 6045 3.739613 GGGAAAGGGGCCCGTGAT 61.740 66.667 19.90 10.53 35.50 3.06
5355 6046 2.359011 GGAAAGGGGCCCGTGATT 59.641 61.111 19.90 9.74 0.00 2.57
5356 6047 2.052104 GGAAAGGGGCCCGTGATTG 61.052 63.158 19.90 0.00 0.00 2.67
5357 6048 2.037208 AAAGGGGCCCGTGATTGG 59.963 61.111 19.90 0.00 0.00 3.16
5365 6056 2.189257 CCGTGATTGGGATGCCGA 59.811 61.111 0.00 0.00 0.00 5.54
5366 6057 1.227943 CCGTGATTGGGATGCCGAT 60.228 57.895 5.51 5.51 0.00 4.18
5367 6058 0.034756 CCGTGATTGGGATGCCGATA 59.965 55.000 5.87 0.00 0.00 2.92
5368 6059 1.542328 CCGTGATTGGGATGCCGATAA 60.542 52.381 5.87 0.00 0.00 1.75
5369 6060 2.426522 CGTGATTGGGATGCCGATAAT 58.573 47.619 5.87 0.00 0.00 1.28
5370 6061 2.416547 CGTGATTGGGATGCCGATAATC 59.583 50.000 5.87 6.89 0.00 1.75
5371 6062 3.411446 GTGATTGGGATGCCGATAATCA 58.589 45.455 5.87 9.47 35.93 2.57
5372 6063 3.820467 GTGATTGGGATGCCGATAATCAA 59.180 43.478 16.01 0.00 38.87 2.57
5373 6064 4.278170 GTGATTGGGATGCCGATAATCAAA 59.722 41.667 16.01 0.00 38.87 2.69
5374 6065 4.520111 TGATTGGGATGCCGATAATCAAAG 59.480 41.667 13.10 0.00 35.51 2.77
5375 6066 3.855255 TGGGATGCCGATAATCAAAGA 57.145 42.857 0.00 0.00 0.00 2.52
5376 6067 4.371624 TGGGATGCCGATAATCAAAGAT 57.628 40.909 0.00 0.00 0.00 2.40
5377 6068 4.326826 TGGGATGCCGATAATCAAAGATC 58.673 43.478 0.00 0.00 0.00 2.75
5378 6069 4.202451 TGGGATGCCGATAATCAAAGATCA 60.202 41.667 0.00 0.00 0.00 2.92
5379 6070 4.154918 GGGATGCCGATAATCAAAGATCAC 59.845 45.833 0.00 0.00 0.00 3.06
5380 6071 4.154918 GGATGCCGATAATCAAAGATCACC 59.845 45.833 0.00 0.00 0.00 4.02
5381 6072 4.422073 TGCCGATAATCAAAGATCACCT 57.578 40.909 0.00 0.00 0.00 4.00
5382 6073 4.129380 TGCCGATAATCAAAGATCACCTG 58.871 43.478 0.00 0.00 0.00 4.00
5383 6074 3.499918 GCCGATAATCAAAGATCACCTGG 59.500 47.826 0.00 0.00 0.00 4.45
5384 6075 4.743651 GCCGATAATCAAAGATCACCTGGA 60.744 45.833 0.00 0.00 0.00 3.86
5385 6076 5.555017 CCGATAATCAAAGATCACCTGGAT 58.445 41.667 0.00 0.00 39.53 3.41
5395 6086 4.013267 GATCACCTGGATCCCTATTGTG 57.987 50.000 9.90 9.28 45.58 3.33
5396 6087 2.845659 TCACCTGGATCCCTATTGTGT 58.154 47.619 9.90 0.00 0.00 3.72
5397 6088 2.505407 TCACCTGGATCCCTATTGTGTG 59.495 50.000 9.90 6.20 0.00 3.82
5398 6089 1.846439 ACCTGGATCCCTATTGTGTGG 59.154 52.381 9.90 0.37 0.00 4.17
5399 6090 1.143684 CCTGGATCCCTATTGTGTGGG 59.856 57.143 9.90 0.00 44.66 4.61
5400 6091 0.550914 TGGATCCCTATTGTGTGGGC 59.449 55.000 9.90 0.00 43.04 5.36
5401 6092 0.178990 GGATCCCTATTGTGTGGGCC 60.179 60.000 0.00 0.00 43.04 5.80
5402 6093 0.550914 GATCCCTATTGTGTGGGCCA 59.449 55.000 0.00 0.00 43.04 5.36
5403 6094 1.006813 ATCCCTATTGTGTGGGCCAA 58.993 50.000 8.40 0.00 43.04 4.52
5404 6095 0.331278 TCCCTATTGTGTGGGCCAAG 59.669 55.000 8.40 0.00 43.04 3.61
5405 6096 0.684153 CCCTATTGTGTGGGCCAAGG 60.684 60.000 8.40 10.66 36.61 3.61
5406 6097 0.331278 CCTATTGTGTGGGCCAAGGA 59.669 55.000 8.40 0.00 0.00 3.36
5407 6098 1.063717 CCTATTGTGTGGGCCAAGGAT 60.064 52.381 8.40 2.80 0.00 3.24
5408 6099 2.026641 CTATTGTGTGGGCCAAGGATG 58.973 52.381 8.40 0.00 0.00 3.51
5409 6100 0.114954 ATTGTGTGGGCCAAGGATGT 59.885 50.000 8.40 0.00 0.00 3.06
5410 6101 0.105760 TTGTGTGGGCCAAGGATGTT 60.106 50.000 8.40 0.00 0.00 2.71
5411 6102 0.774276 TGTGTGGGCCAAGGATGTTA 59.226 50.000 8.40 0.00 0.00 2.41
5412 6103 1.357420 TGTGTGGGCCAAGGATGTTAT 59.643 47.619 8.40 0.00 0.00 1.89
5413 6104 2.024414 GTGTGGGCCAAGGATGTTATC 58.976 52.381 8.40 0.00 0.00 1.75
5414 6105 1.308998 GTGGGCCAAGGATGTTATCG 58.691 55.000 8.40 0.00 0.00 2.92
5415 6106 0.182537 TGGGCCAAGGATGTTATCGG 59.817 55.000 2.13 0.00 0.00 4.18
5416 6107 0.182775 GGGCCAAGGATGTTATCGGT 59.817 55.000 4.39 0.00 0.00 4.69
5417 6108 1.409661 GGGCCAAGGATGTTATCGGTT 60.410 52.381 4.39 0.00 0.00 4.44
5418 6109 2.158726 GGGCCAAGGATGTTATCGGTTA 60.159 50.000 4.39 0.00 0.00 2.85
5419 6110 3.497942 GGGCCAAGGATGTTATCGGTTAT 60.498 47.826 4.39 0.00 0.00 1.89
5420 6111 3.751698 GGCCAAGGATGTTATCGGTTATC 59.248 47.826 0.00 0.00 0.00 1.75
5421 6112 4.385825 GCCAAGGATGTTATCGGTTATCA 58.614 43.478 0.00 0.00 0.00 2.15
5422 6113 4.213482 GCCAAGGATGTTATCGGTTATCAC 59.787 45.833 0.00 0.00 0.00 3.06
5423 6114 5.611374 CCAAGGATGTTATCGGTTATCACT 58.389 41.667 0.00 0.00 0.00 3.41
5424 6115 6.055588 CCAAGGATGTTATCGGTTATCACTT 58.944 40.000 0.00 0.00 0.00 3.16
5425 6116 6.017934 CCAAGGATGTTATCGGTTATCACTTG 60.018 42.308 0.00 0.00 33.07 3.16
5426 6117 5.611374 AGGATGTTATCGGTTATCACTTGG 58.389 41.667 0.00 0.00 0.00 3.61
5427 6118 5.365605 AGGATGTTATCGGTTATCACTTGGA 59.634 40.000 0.00 0.00 0.00 3.53
5428 6119 5.696724 GGATGTTATCGGTTATCACTTGGAG 59.303 44.000 0.00 0.00 0.00 3.86
5429 6120 5.925506 TGTTATCGGTTATCACTTGGAGA 57.074 39.130 0.00 0.00 0.00 3.71
5430 6121 6.479972 TGTTATCGGTTATCACTTGGAGAT 57.520 37.500 0.00 0.00 0.00 2.75
5431 6122 6.884832 TGTTATCGGTTATCACTTGGAGATT 58.115 36.000 0.00 0.00 0.00 2.40
5432 6123 6.984474 TGTTATCGGTTATCACTTGGAGATTC 59.016 38.462 0.00 0.00 0.00 2.52
5433 6124 5.878406 ATCGGTTATCACTTGGAGATTCT 57.122 39.130 0.00 0.00 0.00 2.40
5434 6125 5.263968 TCGGTTATCACTTGGAGATTCTC 57.736 43.478 5.03 5.03 0.00 2.87
5435 6126 4.956700 TCGGTTATCACTTGGAGATTCTCT 59.043 41.667 13.22 0.00 0.00 3.10
5436 6127 5.422331 TCGGTTATCACTTGGAGATTCTCTT 59.578 40.000 13.22 0.00 0.00 2.85
5437 6128 6.605995 TCGGTTATCACTTGGAGATTCTCTTA 59.394 38.462 13.22 0.91 0.00 2.10
5438 6129 6.920758 CGGTTATCACTTGGAGATTCTCTTAG 59.079 42.308 13.22 12.23 0.00 2.18
5439 6130 7.201830 CGGTTATCACTTGGAGATTCTCTTAGA 60.202 40.741 13.22 5.70 0.00 2.10
5440 6131 8.478877 GGTTATCACTTGGAGATTCTCTTAGAA 58.521 37.037 13.22 6.00 38.78 2.10
5441 6132 9.877178 GTTATCACTTGGAGATTCTCTTAGAAA 57.123 33.333 13.22 5.73 37.82 2.52
5443 6134 8.961294 ATCACTTGGAGATTCTCTTAGAAATG 57.039 34.615 13.22 6.16 37.82 2.32
5444 6135 7.911651 TCACTTGGAGATTCTCTTAGAAATGT 58.088 34.615 13.22 0.35 37.82 2.71
5445 6136 9.035890 TCACTTGGAGATTCTCTTAGAAATGTA 57.964 33.333 13.22 0.00 37.82 2.29
5446 6137 9.311916 CACTTGGAGATTCTCTTAGAAATGTAG 57.688 37.037 13.22 0.00 37.82 2.74
5447 6138 9.261035 ACTTGGAGATTCTCTTAGAAATGTAGA 57.739 33.333 13.22 0.00 37.82 2.59
5461 6152 9.872757 TTAGAAATGTAGAAATGTCAAAACGAC 57.127 29.630 0.00 0.00 45.61 4.34
5469 6160 3.472263 GTCAAAACGACACCCATGC 57.528 52.632 0.00 0.00 44.69 4.06
5470 6161 0.665835 GTCAAAACGACACCCATGCA 59.334 50.000 0.00 0.00 44.69 3.96
5471 6162 1.269448 GTCAAAACGACACCCATGCAT 59.731 47.619 0.00 0.00 44.69 3.96
5472 6163 1.269174 TCAAAACGACACCCATGCATG 59.731 47.619 20.19 20.19 0.00 4.06
5473 6164 0.038343 AAAACGACACCCATGCATGC 60.038 50.000 21.69 11.82 0.00 4.06
5474 6165 1.177895 AAACGACACCCATGCATGCA 61.178 50.000 25.04 25.04 0.00 3.96
5475 6166 1.177895 AACGACACCCATGCATGCAA 61.178 50.000 26.68 8.49 0.00 4.08
5476 6167 1.138036 CGACACCCATGCATGCAAG 59.862 57.895 26.68 20.93 0.00 4.01
5477 6168 1.307355 CGACACCCATGCATGCAAGA 61.307 55.000 26.68 0.33 0.00 3.02
5478 6169 0.889994 GACACCCATGCATGCAAGAA 59.110 50.000 26.68 0.00 0.00 2.52
5479 6170 0.604578 ACACCCATGCATGCAAGAAC 59.395 50.000 26.68 0.00 0.00 3.01
5480 6171 0.604073 CACCCATGCATGCAAGAACA 59.396 50.000 26.68 0.00 0.00 3.18
5481 6172 1.001068 CACCCATGCATGCAAGAACAA 59.999 47.619 26.68 0.00 0.00 2.83
5482 6173 1.001181 ACCCATGCATGCAAGAACAAC 59.999 47.619 26.68 0.00 0.00 3.32
5483 6174 1.274167 CCCATGCATGCAAGAACAACT 59.726 47.619 26.68 1.67 0.00 3.16
5484 6175 2.492881 CCCATGCATGCAAGAACAACTA 59.507 45.455 26.68 0.00 0.00 2.24
5485 6176 3.428452 CCCATGCATGCAAGAACAACTAG 60.428 47.826 26.68 4.53 0.00 2.57
5486 6177 3.441222 CCATGCATGCAAGAACAACTAGA 59.559 43.478 26.68 0.00 0.00 2.43
5487 6178 4.082625 CCATGCATGCAAGAACAACTAGAA 60.083 41.667 26.68 0.00 0.00 2.10
5488 6179 4.754372 TGCATGCAAGAACAACTAGAAG 57.246 40.909 20.30 0.00 0.00 2.85
5489 6180 4.388485 TGCATGCAAGAACAACTAGAAGA 58.612 39.130 20.30 0.00 0.00 2.87
5490 6181 5.005740 TGCATGCAAGAACAACTAGAAGAT 58.994 37.500 20.30 0.00 0.00 2.40
5491 6182 6.172630 TGCATGCAAGAACAACTAGAAGATA 58.827 36.000 20.30 0.00 0.00 1.98
5492 6183 6.825213 TGCATGCAAGAACAACTAGAAGATAT 59.175 34.615 20.30 0.00 0.00 1.63
5493 6184 7.986889 TGCATGCAAGAACAACTAGAAGATATA 59.013 33.333 20.30 0.00 0.00 0.86
5494 6185 8.997323 GCATGCAAGAACAACTAGAAGATATAT 58.003 33.333 14.21 0.00 0.00 0.86
5527 6218 8.836413 TGTAACCTTAATTACATTGCTCATAGC 58.164 33.333 0.00 0.00 39.56 2.97
5528 6219 8.836413 GTAACCTTAATTACATTGCTCATAGCA 58.164 33.333 0.00 0.00 40.75 3.49
5545 6236 9.814899 GCTCATAGCAGTACATATCTCATATTT 57.185 33.333 0.00 0.00 41.89 1.40
5580 6271 8.931385 ATGTAATCACCAAAATGTAATCAAGC 57.069 30.769 0.00 0.00 0.00 4.01
5581 6272 7.890515 TGTAATCACCAAAATGTAATCAAGCA 58.109 30.769 0.00 0.00 0.00 3.91
5582 6273 8.363390 TGTAATCACCAAAATGTAATCAAGCAA 58.637 29.630 0.00 0.00 0.00 3.91
5583 6274 7.656707 AATCACCAAAATGTAATCAAGCAAC 57.343 32.000 0.00 0.00 0.00 4.17
5584 6275 6.154203 TCACCAAAATGTAATCAAGCAACA 57.846 33.333 0.00 0.00 0.00 3.33
5585 6276 6.577103 TCACCAAAATGTAATCAAGCAACAA 58.423 32.000 0.00 0.00 0.00 2.83
5586 6277 6.700960 TCACCAAAATGTAATCAAGCAACAAG 59.299 34.615 0.00 0.00 0.00 3.16
5587 6278 6.479660 CACCAAAATGTAATCAAGCAACAAGT 59.520 34.615 0.00 0.00 0.00 3.16
5588 6279 7.651304 CACCAAAATGTAATCAAGCAACAAGTA 59.349 33.333 0.00 0.00 0.00 2.24
5589 6280 8.200792 ACCAAAATGTAATCAAGCAACAAGTAA 58.799 29.630 0.00 0.00 0.00 2.24
5590 6281 8.702438 CCAAAATGTAATCAAGCAACAAGTAAG 58.298 33.333 0.00 0.00 0.00 2.34
5591 6282 7.873739 AAATGTAATCAAGCAACAAGTAAGC 57.126 32.000 0.00 0.00 0.00 3.09
5592 6283 5.371115 TGTAATCAAGCAACAAGTAAGCC 57.629 39.130 0.00 0.00 0.00 4.35
5593 6284 4.824537 TGTAATCAAGCAACAAGTAAGCCA 59.175 37.500 0.00 0.00 0.00 4.75
5594 6285 5.476599 TGTAATCAAGCAACAAGTAAGCCAT 59.523 36.000 0.00 0.00 0.00 4.40
5595 6286 4.708726 ATCAAGCAACAAGTAAGCCATC 57.291 40.909 0.00 0.00 0.00 3.51
5596 6287 2.819608 TCAAGCAACAAGTAAGCCATCC 59.180 45.455 0.00 0.00 0.00 3.51
5597 6288 2.557924 CAAGCAACAAGTAAGCCATCCA 59.442 45.455 0.00 0.00 0.00 3.41
5598 6289 2.162681 AGCAACAAGTAAGCCATCCAC 58.837 47.619 0.00 0.00 0.00 4.02
5599 6290 1.135689 GCAACAAGTAAGCCATCCACG 60.136 52.381 0.00 0.00 0.00 4.94
5600 6291 1.468520 CAACAAGTAAGCCATCCACGG 59.531 52.381 0.00 0.00 0.00 4.94
5609 6300 3.902515 CCATCCACGGCATAGAGAG 57.097 57.895 0.00 0.00 0.00 3.20
5610 6301 1.332195 CCATCCACGGCATAGAGAGA 58.668 55.000 0.00 0.00 0.00 3.10
5611 6302 1.688735 CCATCCACGGCATAGAGAGAA 59.311 52.381 0.00 0.00 0.00 2.87
5612 6303 2.301296 CCATCCACGGCATAGAGAGAAT 59.699 50.000 0.00 0.00 0.00 2.40
5613 6304 3.583806 CATCCACGGCATAGAGAGAATC 58.416 50.000 0.00 0.00 0.00 2.52
5614 6305 1.964223 TCCACGGCATAGAGAGAATCC 59.036 52.381 0.00 0.00 33.66 3.01
5615 6306 1.967066 CCACGGCATAGAGAGAATCCT 59.033 52.381 0.00 0.00 33.66 3.24
5616 6307 2.029470 CCACGGCATAGAGAGAATCCTC 60.029 54.545 0.00 0.00 39.72 3.71
5617 6308 2.625314 CACGGCATAGAGAGAATCCTCA 59.375 50.000 0.00 0.00 41.87 3.86
5618 6309 3.068732 CACGGCATAGAGAGAATCCTCAA 59.931 47.826 0.00 0.00 41.87 3.02
5619 6310 3.068873 ACGGCATAGAGAGAATCCTCAAC 59.931 47.826 0.00 0.00 41.87 3.18
5620 6311 3.320541 CGGCATAGAGAGAATCCTCAACT 59.679 47.826 0.00 0.00 41.87 3.16
5621 6312 4.630111 GGCATAGAGAGAATCCTCAACTG 58.370 47.826 0.00 0.00 41.87 3.16
5622 6313 4.100808 GGCATAGAGAGAATCCTCAACTGT 59.899 45.833 0.00 0.00 41.87 3.55
5623 6314 5.396213 GGCATAGAGAGAATCCTCAACTGTT 60.396 44.000 0.00 0.00 41.87 3.16
5624 6315 5.523188 GCATAGAGAGAATCCTCAACTGTTG 59.477 44.000 14.24 14.24 41.87 3.33
5625 6316 3.936564 AGAGAGAATCCTCAACTGTTGC 58.063 45.455 15.52 0.86 41.87 4.17
5626 6317 3.006247 GAGAGAATCCTCAACTGTTGCC 58.994 50.000 15.52 1.29 41.87 4.52
5627 6318 2.373169 AGAGAATCCTCAACTGTTGCCA 59.627 45.455 15.52 2.37 41.87 4.92
5628 6319 3.149196 GAGAATCCTCAACTGTTGCCAA 58.851 45.455 15.52 3.67 39.24 4.52
5629 6320 3.760684 GAGAATCCTCAACTGTTGCCAAT 59.239 43.478 15.52 5.74 39.24 3.16
5630 6321 3.508793 AGAATCCTCAACTGTTGCCAATG 59.491 43.478 15.52 2.64 0.00 2.82
5631 6322 2.363306 TCCTCAACTGTTGCCAATGT 57.637 45.000 15.52 0.00 0.00 2.71
5632 6323 1.955778 TCCTCAACTGTTGCCAATGTG 59.044 47.619 15.52 0.00 0.00 3.21
5633 6324 1.000060 CCTCAACTGTTGCCAATGTGG 60.000 52.381 15.52 0.00 41.55 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
288 297 1.912731 TGTAGGGGCTGCAACTGATAA 59.087 47.619 0.50 0.00 0.00 1.75
297 306 0.607620 TTGCAAAATGTAGGGGCTGC 59.392 50.000 0.00 0.00 0.00 5.25
347 356 6.161855 TCAGTCAGACATTCTTTGTACTGT 57.838 37.500 2.66 0.00 40.76 3.55
350 359 7.800380 CACAATTCAGTCAGACATTCTTTGTAC 59.200 37.037 2.66 0.00 39.18 2.90
362 371 2.349590 CGATGCCACAATTCAGTCAGA 58.650 47.619 0.00 0.00 0.00 3.27
393 418 2.685380 AGGGCAGGAACCGGAGAG 60.685 66.667 9.46 0.00 0.00 3.20
469 495 2.234908 GGATCTGGATAATCCTGACCGG 59.765 54.545 0.00 0.00 45.35 5.28
491 517 2.361610 CACGCCCAAAGCCTCCAT 60.362 61.111 0.00 0.00 38.78 3.41
527 553 1.134159 AGATCAGTCAGCCATCCAAGC 60.134 52.381 0.00 0.00 0.00 4.01
561 587 3.093814 TGCGGGACTAGTGTATTTCTCA 58.906 45.455 0.00 0.00 0.00 3.27
693 727 1.676746 CCCACGCTCTGCTAGTAGTA 58.323 55.000 7.77 0.00 0.00 1.82
694 728 1.668101 GCCCACGCTCTGCTAGTAGT 61.668 60.000 7.77 0.00 0.00 2.73
695 729 1.066587 GCCCACGCTCTGCTAGTAG 59.933 63.158 0.63 0.63 0.00 2.57
763 797 4.500116 GGCGCAGAGACGGAGGTC 62.500 72.222 10.83 0.00 43.76 3.85
929 981 0.519519 CTCTGCTCTCTCGTGTTCGT 59.480 55.000 0.00 0.00 38.33 3.85
930 982 0.796491 GCTCTGCTCTCTCGTGTTCG 60.796 60.000 0.00 0.00 38.55 3.95
931 983 0.525761 AGCTCTGCTCTCTCGTGTTC 59.474 55.000 0.00 0.00 30.62 3.18
933 985 0.525761 GAAGCTCTGCTCTCTCGTGT 59.474 55.000 0.00 0.00 38.25 4.49
934 986 0.810648 AGAAGCTCTGCTCTCTCGTG 59.189 55.000 0.00 0.00 38.25 4.35
936 988 3.628005 CAGAAGCTCTGCTCTCTCG 57.372 57.895 0.00 0.00 38.25 4.04
1244 1296 2.430244 GCTTCTTCCGCGTCGACA 60.430 61.111 17.16 0.00 0.00 4.35
1313 1365 2.955246 TCCTGGCCTCCTCCTCCT 60.955 66.667 3.32 0.00 0.00 3.69
1706 1758 3.832171 GAGAGTGAAGTGCGCGCG 61.832 66.667 28.44 28.44 31.65 6.86
1707 1759 2.431601 AGAGAGTGAAGTGCGCGC 60.432 61.111 27.26 27.26 0.00 6.86
1708 1760 1.803519 GGAGAGAGTGAAGTGCGCG 60.804 63.158 0.00 0.00 0.00 6.86
1709 1761 0.457681 GAGGAGAGAGTGAAGTGCGC 60.458 60.000 0.00 0.00 0.00 6.09
1710 1762 1.173043 AGAGGAGAGAGTGAAGTGCG 58.827 55.000 0.00 0.00 0.00 5.34
1711 1763 2.094234 GGAAGAGGAGAGAGTGAAGTGC 60.094 54.545 0.00 0.00 0.00 4.40
1712 1764 3.056891 GTGGAAGAGGAGAGAGTGAAGTG 60.057 52.174 0.00 0.00 0.00 3.16
1713 1765 3.161866 GTGGAAGAGGAGAGAGTGAAGT 58.838 50.000 0.00 0.00 0.00 3.01
1714 1766 3.430453 AGTGGAAGAGGAGAGAGTGAAG 58.570 50.000 0.00 0.00 0.00 3.02
1715 1767 3.075283 AGAGTGGAAGAGGAGAGAGTGAA 59.925 47.826 0.00 0.00 0.00 3.18
1716 1768 2.647299 AGAGTGGAAGAGGAGAGAGTGA 59.353 50.000 0.00 0.00 0.00 3.41
1717 1769 3.016736 GAGAGTGGAAGAGGAGAGAGTG 58.983 54.545 0.00 0.00 0.00 3.51
1718 1770 2.919602 AGAGAGTGGAAGAGGAGAGAGT 59.080 50.000 0.00 0.00 0.00 3.24
1719 1771 3.652057 AGAGAGTGGAAGAGGAGAGAG 57.348 52.381 0.00 0.00 0.00 3.20
1720 1772 4.202620 TGAAAGAGAGTGGAAGAGGAGAGA 60.203 45.833 0.00 0.00 0.00 3.10
1721 1773 4.085733 TGAAAGAGAGTGGAAGAGGAGAG 58.914 47.826 0.00 0.00 0.00 3.20
1722 1774 4.119556 TGAAAGAGAGTGGAAGAGGAGA 57.880 45.455 0.00 0.00 0.00 3.71
1723 1775 4.222588 ACATGAAAGAGAGTGGAAGAGGAG 59.777 45.833 0.00 0.00 0.00 3.69
1724 1776 4.163427 ACATGAAAGAGAGTGGAAGAGGA 58.837 43.478 0.00 0.00 0.00 3.71
1725 1777 4.550076 ACATGAAAGAGAGTGGAAGAGG 57.450 45.455 0.00 0.00 0.00 3.69
1743 1795 5.509501 GGTGAACAAACATGATGGTGAACAT 60.510 40.000 0.00 0.00 44.18 2.71
1801 1853 2.441164 ACCGTTGCCAGTTTGCCA 60.441 55.556 0.00 0.00 0.00 4.92
1938 1990 2.509336 GCGATGTCCACCGACCTG 60.509 66.667 0.00 0.00 38.32 4.00
1941 1993 1.374252 AACAGCGATGTCCACCGAC 60.374 57.895 6.84 0.00 39.66 4.79
1974 2026 1.243342 CCGATTGCACAGCCAAAGGA 61.243 55.000 0.00 0.00 32.03 3.36
2127 2179 7.414266 AGGGTGGCTTCTAAGATTAGAAAATT 58.586 34.615 14.27 0.00 45.97 1.82
2128 2180 6.974795 AGGGTGGCTTCTAAGATTAGAAAAT 58.025 36.000 14.27 0.00 45.97 1.82
2129 2181 6.388619 AGGGTGGCTTCTAAGATTAGAAAA 57.611 37.500 14.27 3.32 45.97 2.29
2145 2197 0.608035 TTCGAATGGACAAGGGTGGC 60.608 55.000 0.00 0.00 0.00 5.01
2150 2202 4.034510 GCATCTACTTTCGAATGGACAAGG 59.965 45.833 14.74 0.00 0.00 3.61
2152 2204 4.631377 CAGCATCTACTTTCGAATGGACAA 59.369 41.667 14.74 0.00 0.00 3.18
2153 2205 4.183865 CAGCATCTACTTTCGAATGGACA 58.816 43.478 14.74 0.00 0.00 4.02
2154 2206 4.184629 ACAGCATCTACTTTCGAATGGAC 58.815 43.478 14.74 0.00 0.00 4.02
2171 2223 8.856153 TTGACTACATTTATCCTAAAACAGCA 57.144 30.769 0.00 0.00 0.00 4.41
2199 2251 6.920758 GTGTACTAGCGATCAAAGATTCAGAT 59.079 38.462 0.00 0.00 0.00 2.90
2206 2258 4.776795 TGTGTGTACTAGCGATCAAAGA 57.223 40.909 0.00 0.00 0.00 2.52
2348 2563 4.999950 GCCATCTCATTGTAGTAATCCTGG 59.000 45.833 0.00 0.00 0.00 4.45
2504 2719 2.288213 GGACGCATCGATACCTTCATCA 60.288 50.000 0.00 0.00 0.00 3.07
2522 2737 4.457257 CCACCTTCTGAGAATTCAAAGGAC 59.543 45.833 24.14 6.11 40.37 3.85
2534 2749 2.045536 GCCTGGCCACCTTCTGAG 60.046 66.667 7.66 0.00 0.00 3.35
2765 2980 5.385198 TCTGGGAGCTGTTAAGAAAATTGT 58.615 37.500 0.00 0.00 0.00 2.71
2768 2983 6.012745 ACAATCTGGGAGCTGTTAAGAAAAT 58.987 36.000 0.00 0.00 0.00 1.82
2772 2987 4.041567 TCAACAATCTGGGAGCTGTTAAGA 59.958 41.667 0.00 0.00 31.00 2.10
2783 2998 6.489675 CGTCAAGATATTTCAACAATCTGGG 58.510 40.000 0.00 0.00 30.50 4.45
2785 3000 6.545508 TGCGTCAAGATATTTCAACAATCTG 58.454 36.000 0.00 0.00 30.50 2.90
2786 3001 6.741992 TGCGTCAAGATATTTCAACAATCT 57.258 33.333 0.00 0.00 0.00 2.40
2787 3002 7.164826 GTGATGCGTCAAGATATTTCAACAATC 59.835 37.037 10.93 0.00 35.80 2.67
2788 3003 6.968904 GTGATGCGTCAAGATATTTCAACAAT 59.031 34.615 10.93 0.00 35.80 2.71
2790 3005 5.411053 TGTGATGCGTCAAGATATTTCAACA 59.589 36.000 10.93 0.00 35.80 3.33
2791 3006 5.868257 TGTGATGCGTCAAGATATTTCAAC 58.132 37.500 10.93 0.00 35.80 3.18
2798 3013 3.866883 TCACTGTGATGCGTCAAGATA 57.133 42.857 10.93 0.00 35.80 1.98
2815 3030 8.730680 ACAGAATTGATATGTAACCAAGTTCAC 58.269 33.333 0.00 0.00 0.00 3.18
2842 3057 7.397221 CAAGCCATCATACCTATCCAAGAATA 58.603 38.462 0.00 0.00 0.00 1.75
2844 3059 5.624159 CAAGCCATCATACCTATCCAAGAA 58.376 41.667 0.00 0.00 0.00 2.52
2858 3073 2.555325 CACTGAAAGAAGCAAGCCATCA 59.445 45.455 0.00 0.00 37.43 3.07
2882 3097 7.959658 AACAACATATGATCTTCCATTTCCA 57.040 32.000 10.38 0.00 0.00 3.53
2925 3140 0.037512 CTCTGTGAGGTGTCAGCCAG 60.038 60.000 0.00 0.00 31.53 4.85
2939 3154 5.869888 CCGAGCAAAATACTTCTTACTCTGT 59.130 40.000 0.00 0.00 0.00 3.41
3053 3268 6.720012 AAAAATTGGGATCAAATTGTACGC 57.280 33.333 6.42 0.00 36.36 4.42
3236 3451 9.184523 TGCTATAAACAGCCAGTTAATATTTGT 57.815 29.630 0.00 0.00 40.26 2.83
3564 3780 7.434013 GGCGAAACAAGAATTACAAAGAAAAGA 59.566 33.333 0.00 0.00 0.00 2.52
3587 3803 0.963355 TGGGGAGGAAAAATTCGGCG 60.963 55.000 0.00 0.00 0.00 6.46
3588 3804 1.136891 CATGGGGAGGAAAAATTCGGC 59.863 52.381 0.00 0.00 0.00 5.54
3594 3810 3.893753 TGAAGTCATGGGGAGGAAAAA 57.106 42.857 0.00 0.00 0.00 1.94
3621 3837 5.923733 AGAGAAGACGGTTCAGTTATGAT 57.076 39.130 3.00 0.00 34.73 2.45
3851 4067 3.983044 TCCTCTCCAGCCTAGAAAAAC 57.017 47.619 0.00 0.00 0.00 2.43
3854 4070 1.765314 GCATCCTCTCCAGCCTAGAAA 59.235 52.381 0.00 0.00 0.00 2.52
3930 4146 5.351948 TCAGCTGTTGTATTAGTATGCCA 57.648 39.130 14.67 0.00 0.00 4.92
4034 4250 6.183360 ACACACCTAACACTTCAAAAGTAACG 60.183 38.462 0.00 0.00 40.46 3.18
4069 4285 3.480505 AGGTCGAATGATCATGATGCA 57.519 42.857 14.30 11.23 0.00 3.96
4183 4399 8.844244 AGAATCAATATTATGGCACTCAAGAAC 58.156 33.333 0.00 0.00 0.00 3.01
4382 4600 4.440112 GCATACCTAAAAGTGGTTCATGGC 60.440 45.833 0.00 0.00 38.88 4.40
4396 4614 7.283807 TCAGAAACATACTCGTAGCATACCTAA 59.716 37.037 0.00 0.00 38.71 2.69
4397 4615 6.769341 TCAGAAACATACTCGTAGCATACCTA 59.231 38.462 0.00 0.00 38.71 3.08
4408 4626 2.932614 CCCTTGCTCAGAAACATACTCG 59.067 50.000 0.00 0.00 0.00 4.18
4458 4676 2.421073 TCCATTCGATTGCAGCTTCAAG 59.579 45.455 4.81 0.00 0.00 3.02
4551 4771 1.542492 ATGAGCCACCTGCAAAAGAG 58.458 50.000 0.00 0.00 44.83 2.85
4612 4832 9.495572 CTGAATTAGGTGTTTTTCTCTAGAACT 57.504 33.333 0.00 0.00 33.13 3.01
4714 4934 1.812571 GGCTTGTCGTGTGAATTCCAT 59.187 47.619 2.27 0.00 0.00 3.41
4844 5064 4.330944 TCCTCGTTTTGCTGAAACTCTA 57.669 40.909 12.30 1.20 44.37 2.43
4863 5083 5.470047 TCTACTTGAGTCTGGTTTCTTCC 57.530 43.478 0.00 0.00 0.00 3.46
5033 5724 7.396339 ACCGATAGAAATGGCATAGTAGACATA 59.604 37.037 0.00 0.00 34.86 2.29
5046 5737 5.995282 TGGTTATAAGCACCGATAGAAATGG 59.005 40.000 13.22 0.00 37.07 3.16
5072 5763 1.642762 AGGGGGATCTGAGCATTTGTT 59.357 47.619 0.00 0.00 0.00 2.83
5084 5775 1.813102 ATGGAGAGAACAGGGGGATC 58.187 55.000 0.00 0.00 0.00 3.36
5096 5787 4.998671 TCTAGAGTTGCTCAATGGAGAG 57.001 45.455 0.00 0.00 44.26 3.20
5118 5809 1.978580 GGGAGAAGTTCTTGGGACTCA 59.021 52.381 6.88 0.00 0.00 3.41
5184 5875 7.713507 TCACAAGAGTTCGAAGAAATTTAAGGA 59.286 33.333 0.00 0.00 45.90 3.36
5185 5876 7.861630 TCACAAGAGTTCGAAGAAATTTAAGG 58.138 34.615 0.00 0.00 45.90 2.69
5187 5878 8.657074 TCTCACAAGAGTTCGAAGAAATTTAA 57.343 30.769 0.00 0.00 40.76 1.52
5238 5929 6.767524 ACAGTTTGTGTCAAATAAAGTGGA 57.232 33.333 13.51 0.00 38.44 4.02
5267 5958 1.599518 GATGCGTGGGACCAACACA 60.600 57.895 0.00 0.00 38.74 3.72
5272 5963 0.836606 ATGTATGATGCGTGGGACCA 59.163 50.000 0.00 0.00 0.00 4.02
5273 5964 2.831685 TATGTATGATGCGTGGGACC 57.168 50.000 0.00 0.00 0.00 4.46
5274 5965 7.979537 TCTTATTATATGTATGATGCGTGGGAC 59.020 37.037 0.00 0.00 0.00 4.46
5275 5966 8.073467 TCTTATTATATGTATGATGCGTGGGA 57.927 34.615 0.00 0.00 0.00 4.37
5276 5967 8.716646 TTCTTATTATATGTATGATGCGTGGG 57.283 34.615 0.00 0.00 0.00 4.61
5294 5985 8.394040 CCCTTGATATCCCCTGTATTTCTTATT 58.606 37.037 0.00 0.00 0.00 1.40
5295 5986 7.744068 TCCCTTGATATCCCCTGTATTTCTTAT 59.256 37.037 0.00 0.00 0.00 1.73
5296 5987 7.086260 TCCCTTGATATCCCCTGTATTTCTTA 58.914 38.462 0.00 0.00 0.00 2.10
5297 5988 5.917087 TCCCTTGATATCCCCTGTATTTCTT 59.083 40.000 0.00 0.00 0.00 2.52
5298 5989 5.486332 TCCCTTGATATCCCCTGTATTTCT 58.514 41.667 0.00 0.00 0.00 2.52
5299 5990 5.843019 TCCCTTGATATCCCCTGTATTTC 57.157 43.478 0.00 0.00 0.00 2.17
5300 5991 6.373759 GTTTCCCTTGATATCCCCTGTATTT 58.626 40.000 0.00 0.00 0.00 1.40
5301 5992 5.162980 GGTTTCCCTTGATATCCCCTGTATT 60.163 44.000 0.00 0.00 0.00 1.89
5302 5993 4.354087 GGTTTCCCTTGATATCCCCTGTAT 59.646 45.833 0.00 0.00 0.00 2.29
5303 5994 3.720002 GGTTTCCCTTGATATCCCCTGTA 59.280 47.826 0.00 0.00 0.00 2.74
5304 5995 2.514160 GGTTTCCCTTGATATCCCCTGT 59.486 50.000 0.00 0.00 0.00 4.00
5305 5996 2.513738 TGGTTTCCCTTGATATCCCCTG 59.486 50.000 0.00 0.00 0.00 4.45
5306 5997 2.871796 TGGTTTCCCTTGATATCCCCT 58.128 47.619 0.00 0.00 0.00 4.79
5307 5998 3.052869 ACTTGGTTTCCCTTGATATCCCC 60.053 47.826 0.00 0.00 0.00 4.81
5308 5999 4.251103 ACTTGGTTTCCCTTGATATCCC 57.749 45.455 0.00 0.00 0.00 3.85
5309 6000 8.990163 TTTATACTTGGTTTCCCTTGATATCC 57.010 34.615 0.00 0.00 0.00 2.59
5311 6002 9.421399 CCTTTTATACTTGGTTTCCCTTGATAT 57.579 33.333 0.00 0.00 0.00 1.63
5312 6003 7.837187 CCCTTTTATACTTGGTTTCCCTTGATA 59.163 37.037 0.00 0.00 0.00 2.15
5313 6004 6.667848 CCCTTTTATACTTGGTTTCCCTTGAT 59.332 38.462 0.00 0.00 0.00 2.57
5314 6005 6.014012 CCCTTTTATACTTGGTTTCCCTTGA 58.986 40.000 0.00 0.00 0.00 3.02
5315 6006 5.186992 CCCCTTTTATACTTGGTTTCCCTTG 59.813 44.000 0.00 0.00 0.00 3.61
5316 6007 5.076738 TCCCCTTTTATACTTGGTTTCCCTT 59.923 40.000 0.00 0.00 0.00 3.95
5317 6008 4.608918 TCCCCTTTTATACTTGGTTTCCCT 59.391 41.667 0.00 0.00 0.00 4.20
5318 6009 4.938028 TCCCCTTTTATACTTGGTTTCCC 58.062 43.478 0.00 0.00 0.00 3.97
5319 6010 6.070995 CCTTTCCCCTTTTATACTTGGTTTCC 60.071 42.308 0.00 0.00 0.00 3.13
5320 6011 6.070995 CCCTTTCCCCTTTTATACTTGGTTTC 60.071 42.308 0.00 0.00 0.00 2.78
5321 6012 5.783360 CCCTTTCCCCTTTTATACTTGGTTT 59.217 40.000 0.00 0.00 0.00 3.27
5322 6013 5.338632 CCCTTTCCCCTTTTATACTTGGTT 58.661 41.667 0.00 0.00 0.00 3.67
5323 6014 4.264668 CCCCTTTCCCCTTTTATACTTGGT 60.265 45.833 0.00 0.00 0.00 3.67
5324 6015 4.286707 CCCCTTTCCCCTTTTATACTTGG 58.713 47.826 0.00 0.00 0.00 3.61
5325 6016 3.704566 GCCCCTTTCCCCTTTTATACTTG 59.295 47.826 0.00 0.00 0.00 3.16
5326 6017 3.310361 GGCCCCTTTCCCCTTTTATACTT 60.310 47.826 0.00 0.00 0.00 2.24
5327 6018 2.246588 GGCCCCTTTCCCCTTTTATACT 59.753 50.000 0.00 0.00 0.00 2.12
5328 6019 2.674420 GGCCCCTTTCCCCTTTTATAC 58.326 52.381 0.00 0.00 0.00 1.47
5329 6020 1.576757 GGGCCCCTTTCCCCTTTTATA 59.423 52.381 12.23 0.00 38.30 0.98
5330 6021 0.341961 GGGCCCCTTTCCCCTTTTAT 59.658 55.000 12.23 0.00 38.30 1.40
5331 6022 1.785067 GGGCCCCTTTCCCCTTTTA 59.215 57.895 12.23 0.00 38.30 1.52
5332 6023 2.536621 GGGCCCCTTTCCCCTTTT 59.463 61.111 12.23 0.00 38.30 2.27
5333 6024 3.992641 CGGGCCCCTTTCCCCTTT 61.993 66.667 18.66 0.00 40.75 3.11
5337 6028 3.296842 AATCACGGGCCCCTTTCCC 62.297 63.158 18.66 0.00 40.43 3.97
5338 6029 2.052104 CAATCACGGGCCCCTTTCC 61.052 63.158 18.66 0.00 0.00 3.13
5339 6030 2.052104 CCAATCACGGGCCCCTTTC 61.052 63.158 18.66 0.00 0.00 2.62
5340 6031 2.037208 CCAATCACGGGCCCCTTT 59.963 61.111 18.66 1.24 0.00 3.11
5341 6032 4.060667 CCCAATCACGGGCCCCTT 62.061 66.667 18.66 0.00 40.07 3.95
5343 6034 3.820843 ATCCCAATCACGGGCCCC 61.821 66.667 18.66 0.00 46.92 5.80
5344 6035 2.519302 CATCCCAATCACGGGCCC 60.519 66.667 13.57 13.57 46.92 5.80
5345 6036 3.219198 GCATCCCAATCACGGGCC 61.219 66.667 0.00 0.00 46.92 5.80
5346 6037 3.219198 GGCATCCCAATCACGGGC 61.219 66.667 0.00 0.00 46.92 6.13
5348 6039 0.034756 TATCGGCATCCCAATCACGG 59.965 55.000 0.00 0.00 0.00 4.94
5349 6040 1.877637 TTATCGGCATCCCAATCACG 58.122 50.000 0.00 0.00 0.00 4.35
5350 6041 3.411446 TGATTATCGGCATCCCAATCAC 58.589 45.455 0.00 0.00 32.25 3.06
5351 6042 3.786368 TGATTATCGGCATCCCAATCA 57.214 42.857 0.00 0.00 34.21 2.57
5352 6043 4.761739 TCTTTGATTATCGGCATCCCAATC 59.238 41.667 0.00 0.00 0.00 2.67
5353 6044 4.728772 TCTTTGATTATCGGCATCCCAAT 58.271 39.130 0.00 0.00 0.00 3.16
5354 6045 4.163441 TCTTTGATTATCGGCATCCCAA 57.837 40.909 0.00 0.00 0.00 4.12
5355 6046 3.855255 TCTTTGATTATCGGCATCCCA 57.145 42.857 0.00 0.00 0.00 4.37
5356 6047 4.154918 GTGATCTTTGATTATCGGCATCCC 59.845 45.833 0.00 0.00 0.00 3.85
5357 6048 4.154918 GGTGATCTTTGATTATCGGCATCC 59.845 45.833 0.00 0.00 0.00 3.51
5358 6049 4.999950 AGGTGATCTTTGATTATCGGCATC 59.000 41.667 0.00 0.00 0.00 3.91
5359 6050 4.758674 CAGGTGATCTTTGATTATCGGCAT 59.241 41.667 0.00 0.00 0.00 4.40
5360 6051 4.129380 CAGGTGATCTTTGATTATCGGCA 58.871 43.478 0.00 0.00 0.00 5.69
5361 6052 3.499918 CCAGGTGATCTTTGATTATCGGC 59.500 47.826 0.00 0.00 0.00 5.54
5362 6053 4.960938 TCCAGGTGATCTTTGATTATCGG 58.039 43.478 0.00 0.00 0.00 4.18
5363 6054 6.718454 GATCCAGGTGATCTTTGATTATCG 57.282 41.667 0.00 0.00 45.46 2.92
5375 6066 3.137176 CACACAATAGGGATCCAGGTGAT 59.863 47.826 15.23 0.00 36.01 3.06
5376 6067 2.505407 CACACAATAGGGATCCAGGTGA 59.495 50.000 15.23 0.00 0.00 4.02
5377 6068 2.421952 CCACACAATAGGGATCCAGGTG 60.422 54.545 15.23 15.01 0.00 4.00
5378 6069 1.846439 CCACACAATAGGGATCCAGGT 59.154 52.381 15.23 0.00 0.00 4.00
5379 6070 2.645838 CCACACAATAGGGATCCAGG 57.354 55.000 15.23 0.00 0.00 4.45
5387 6078 0.331278 TCCTTGGCCCACACAATAGG 59.669 55.000 0.00 0.00 0.00 2.57
5388 6079 2.026641 CATCCTTGGCCCACACAATAG 58.973 52.381 0.00 0.00 0.00 1.73
5389 6080 1.357420 ACATCCTTGGCCCACACAATA 59.643 47.619 0.00 0.00 0.00 1.90
5390 6081 0.114954 ACATCCTTGGCCCACACAAT 59.885 50.000 0.00 0.00 0.00 2.71
5391 6082 0.105760 AACATCCTTGGCCCACACAA 60.106 50.000 0.00 0.00 0.00 3.33
5392 6083 0.774276 TAACATCCTTGGCCCACACA 59.226 50.000 0.00 0.00 0.00 3.72
5393 6084 2.024414 GATAACATCCTTGGCCCACAC 58.976 52.381 0.00 0.00 0.00 3.82
5394 6085 1.408127 CGATAACATCCTTGGCCCACA 60.408 52.381 0.00 0.00 0.00 4.17
5395 6086 1.308998 CGATAACATCCTTGGCCCAC 58.691 55.000 0.00 0.00 0.00 4.61
5396 6087 0.182537 CCGATAACATCCTTGGCCCA 59.817 55.000 0.00 0.00 0.00 5.36
5397 6088 0.182775 ACCGATAACATCCTTGGCCC 59.817 55.000 0.00 0.00 0.00 5.80
5398 6089 2.052782 AACCGATAACATCCTTGGCC 57.947 50.000 0.00 0.00 0.00 5.36
5399 6090 4.213482 GTGATAACCGATAACATCCTTGGC 59.787 45.833 0.00 0.00 0.00 4.52
5400 6091 5.611374 AGTGATAACCGATAACATCCTTGG 58.389 41.667 0.00 0.00 0.00 3.61
5401 6092 6.017934 CCAAGTGATAACCGATAACATCCTTG 60.018 42.308 0.00 0.00 31.99 3.61
5402 6093 6.055588 CCAAGTGATAACCGATAACATCCTT 58.944 40.000 0.00 0.00 0.00 3.36
5403 6094 5.365605 TCCAAGTGATAACCGATAACATCCT 59.634 40.000 0.00 0.00 0.00 3.24
5404 6095 5.607477 TCCAAGTGATAACCGATAACATCC 58.393 41.667 0.00 0.00 0.00 3.51
5405 6096 6.513180 TCTCCAAGTGATAACCGATAACATC 58.487 40.000 0.00 0.00 0.00 3.06
5406 6097 6.479972 TCTCCAAGTGATAACCGATAACAT 57.520 37.500 0.00 0.00 0.00 2.71
5407 6098 5.925506 TCTCCAAGTGATAACCGATAACA 57.074 39.130 0.00 0.00 0.00 2.41
5408 6099 7.210873 AGAATCTCCAAGTGATAACCGATAAC 58.789 38.462 0.00 0.00 0.00 1.89
5409 6100 7.361457 AGAATCTCCAAGTGATAACCGATAA 57.639 36.000 0.00 0.00 0.00 1.75
5410 6101 6.978674 AGAATCTCCAAGTGATAACCGATA 57.021 37.500 0.00 0.00 0.00 2.92
5411 6102 5.848406 GAGAATCTCCAAGTGATAACCGAT 58.152 41.667 0.00 0.00 0.00 4.18
5412 6103 5.263968 GAGAATCTCCAAGTGATAACCGA 57.736 43.478 0.00 0.00 0.00 4.69
5452 6143 1.269174 CATGCATGGGTGTCGTTTTGA 59.731 47.619 19.40 0.00 0.00 2.69
5453 6144 1.700523 CATGCATGGGTGTCGTTTTG 58.299 50.000 19.40 0.00 0.00 2.44
5454 6145 0.038343 GCATGCATGGGTGTCGTTTT 60.038 50.000 27.34 0.00 0.00 2.43
5455 6146 1.177895 TGCATGCATGGGTGTCGTTT 61.178 50.000 27.34 0.00 0.00 3.60
5456 6147 1.177895 TTGCATGCATGGGTGTCGTT 61.178 50.000 27.34 0.00 0.00 3.85
5457 6148 1.588824 CTTGCATGCATGGGTGTCGT 61.589 55.000 27.34 0.00 0.00 4.34
5458 6149 1.138036 CTTGCATGCATGGGTGTCG 59.862 57.895 27.34 0.91 0.00 4.35
5459 6150 0.889994 TTCTTGCATGCATGGGTGTC 59.110 50.000 27.34 11.23 0.00 3.67
5460 6151 0.604578 GTTCTTGCATGCATGGGTGT 59.395 50.000 27.34 0.00 0.00 4.16
5461 6152 0.604073 TGTTCTTGCATGCATGGGTG 59.396 50.000 27.34 14.00 0.00 4.61
5462 6153 1.001181 GTTGTTCTTGCATGCATGGGT 59.999 47.619 27.34 0.00 0.00 4.51
5463 6154 1.274167 AGTTGTTCTTGCATGCATGGG 59.726 47.619 27.34 18.17 0.00 4.00
5464 6155 2.736144 AGTTGTTCTTGCATGCATGG 57.264 45.000 27.34 20.34 0.00 3.66
5465 6156 4.690184 TCTAGTTGTTCTTGCATGCATG 57.310 40.909 23.37 23.63 0.00 4.06
5466 6157 5.005740 TCTTCTAGTTGTTCTTGCATGCAT 58.994 37.500 23.37 6.28 0.00 3.96
5467 6158 4.388485 TCTTCTAGTTGTTCTTGCATGCA 58.612 39.130 18.46 18.46 0.00 3.96
5468 6159 5.557891 ATCTTCTAGTTGTTCTTGCATGC 57.442 39.130 11.82 11.82 0.00 4.06
5501 6192 8.836413 GCTATGAGCAATGTAATTAAGGTTACA 58.164 33.333 4.55 4.55 43.02 2.41
5519 6210 9.814899 AAATATGAGATATGTACTGCTATGAGC 57.185 33.333 0.00 0.00 42.82 4.26
5555 6246 8.530311 TGCTTGATTACATTTTGGTGATTACAT 58.470 29.630 0.00 0.00 0.00 2.29
5556 6247 7.890515 TGCTTGATTACATTTTGGTGATTACA 58.109 30.769 0.00 0.00 0.00 2.41
5557 6248 8.647226 GTTGCTTGATTACATTTTGGTGATTAC 58.353 33.333 0.00 0.00 0.00 1.89
5558 6249 8.363390 TGTTGCTTGATTACATTTTGGTGATTA 58.637 29.630 0.00 0.00 0.00 1.75
5559 6250 7.215789 TGTTGCTTGATTACATTTTGGTGATT 58.784 30.769 0.00 0.00 0.00 2.57
5560 6251 6.757237 TGTTGCTTGATTACATTTTGGTGAT 58.243 32.000 0.00 0.00 0.00 3.06
5561 6252 6.154203 TGTTGCTTGATTACATTTTGGTGA 57.846 33.333 0.00 0.00 0.00 4.02
5562 6253 6.479660 ACTTGTTGCTTGATTACATTTTGGTG 59.520 34.615 0.00 0.00 0.00 4.17
5563 6254 6.581712 ACTTGTTGCTTGATTACATTTTGGT 58.418 32.000 0.00 0.00 0.00 3.67
5564 6255 8.586570 TTACTTGTTGCTTGATTACATTTTGG 57.413 30.769 0.00 0.00 0.00 3.28
5565 6256 8.216453 GCTTACTTGTTGCTTGATTACATTTTG 58.784 33.333 0.00 0.00 0.00 2.44
5566 6257 7.384932 GGCTTACTTGTTGCTTGATTACATTTT 59.615 33.333 0.00 0.00 0.00 1.82
5567 6258 6.868339 GGCTTACTTGTTGCTTGATTACATTT 59.132 34.615 0.00 0.00 0.00 2.32
5568 6259 6.015519 TGGCTTACTTGTTGCTTGATTACATT 60.016 34.615 0.00 0.00 0.00 2.71
5569 6260 5.476599 TGGCTTACTTGTTGCTTGATTACAT 59.523 36.000 0.00 0.00 0.00 2.29
5570 6261 4.824537 TGGCTTACTTGTTGCTTGATTACA 59.175 37.500 0.00 0.00 0.00 2.41
5571 6262 5.371115 TGGCTTACTTGTTGCTTGATTAC 57.629 39.130 0.00 0.00 0.00 1.89
5572 6263 5.125417 GGATGGCTTACTTGTTGCTTGATTA 59.875 40.000 0.00 0.00 0.00 1.75
5573 6264 4.082026 GGATGGCTTACTTGTTGCTTGATT 60.082 41.667 0.00 0.00 0.00 2.57
5574 6265 3.445096 GGATGGCTTACTTGTTGCTTGAT 59.555 43.478 0.00 0.00 0.00 2.57
5575 6266 2.819608 GGATGGCTTACTTGTTGCTTGA 59.180 45.455 0.00 0.00 0.00 3.02
5576 6267 2.557924 TGGATGGCTTACTTGTTGCTTG 59.442 45.455 0.00 0.00 0.00 4.01
5577 6268 2.558359 GTGGATGGCTTACTTGTTGCTT 59.442 45.455 0.00 0.00 0.00 3.91
5578 6269 2.162681 GTGGATGGCTTACTTGTTGCT 58.837 47.619 0.00 0.00 0.00 3.91
5579 6270 1.135689 CGTGGATGGCTTACTTGTTGC 60.136 52.381 0.00 0.00 0.00 4.17
5580 6271 1.468520 CCGTGGATGGCTTACTTGTTG 59.531 52.381 0.00 0.00 0.00 3.33
5581 6272 1.821216 CCGTGGATGGCTTACTTGTT 58.179 50.000 0.00 0.00 0.00 2.83
5582 6273 3.551259 CCGTGGATGGCTTACTTGT 57.449 52.632 0.00 0.00 0.00 3.16
5591 6282 1.332195 TCTCTCTATGCCGTGGATGG 58.668 55.000 0.00 0.00 0.00 3.51
5592 6283 3.583806 GATTCTCTCTATGCCGTGGATG 58.416 50.000 0.00 0.00 0.00 3.51
5593 6284 2.564947 GGATTCTCTCTATGCCGTGGAT 59.435 50.000 0.00 0.00 0.00 3.41
5594 6285 1.964223 GGATTCTCTCTATGCCGTGGA 59.036 52.381 0.00 0.00 0.00 4.02
5595 6286 1.967066 AGGATTCTCTCTATGCCGTGG 59.033 52.381 0.00 0.00 0.00 4.94
5596 6287 2.625314 TGAGGATTCTCTCTATGCCGTG 59.375 50.000 1.86 0.00 40.58 4.94
5597 6288 2.950781 TGAGGATTCTCTCTATGCCGT 58.049 47.619 1.86 0.00 40.58 5.68
5598 6289 3.320541 AGTTGAGGATTCTCTCTATGCCG 59.679 47.826 1.86 0.00 40.58 5.69
5599 6290 4.100808 ACAGTTGAGGATTCTCTCTATGCC 59.899 45.833 1.86 0.00 40.58 4.40
5600 6291 5.275067 ACAGTTGAGGATTCTCTCTATGC 57.725 43.478 1.86 0.00 40.58 3.14
5601 6292 5.523188 GCAACAGTTGAGGATTCTCTCTATG 59.477 44.000 17.99 5.35 40.58 2.23
5602 6293 5.396213 GGCAACAGTTGAGGATTCTCTCTAT 60.396 44.000 17.99 0.00 40.58 1.98
5603 6294 4.081420 GGCAACAGTTGAGGATTCTCTCTA 60.081 45.833 17.99 0.00 40.58 2.43
5604 6295 3.307339 GGCAACAGTTGAGGATTCTCTCT 60.307 47.826 17.99 0.00 40.58 3.10
5605 6296 3.006247 GGCAACAGTTGAGGATTCTCTC 58.994 50.000 17.99 0.00 40.58 3.20
5606 6297 2.373169 TGGCAACAGTTGAGGATTCTCT 59.627 45.455 17.99 0.00 46.17 3.10
5607 6298 2.783135 TGGCAACAGTTGAGGATTCTC 58.217 47.619 17.99 0.00 46.17 2.87
5608 6299 2.957402 TGGCAACAGTTGAGGATTCT 57.043 45.000 17.99 0.00 46.17 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.