AutoCloner

Multiple sequence alignment - TraesCS7A01G413600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G413600	chr7A	100.000	4229	0	0	1	4229	604378323	604382551	0.000000e+00	7810.0
1	TraesCS7A01G413600	chr7A	81.468	831	106	36	39	836	729587489	729586674	4.610000e-179	638.0
2	TraesCS7A01G413600	chr7D	95.543	3410	121	12	838	4229	524314739	524318135	0.000000e+00	5426.0
3	TraesCS7A01G413600	chr7D	88.664	741	81	3	922	1662	523544609	523545346	0.000000e+00	900.0
4	TraesCS7A01G413600	chr7D	81.443	873	101	34	4	836	71633794	71634645	0.000000e+00	658.0
5	TraesCS7A01G413600	chr7D	100.000	28	0	0	838	865	562201569	562201596	8.000000e-03	52.8
6	TraesCS7A01G413600	chr7B	94.760	3378	126	18	878	4229	560513760	560517112	0.000000e+00	5210.0
7	TraesCS7A01G413600	chr7B	86.993	592	74	3	1070	1659	559630142	559630732	0.000000e+00	664.0
8	TraesCS7A01G413600	chr6A	95.556	585	12	4	845	1415	74151601	74152185	0.000000e+00	924.0
9	TraesCS7A01G413600	chr1A	82.679	866	98	41	4	836	139557727	139556881	0.000000e+00	721.0
10	TraesCS7A01G413600	chr2A	81.776	867	118	30	4	836	38757637	38756777	0.000000e+00	689.0
11	TraesCS7A01G413600	chr2A	80.839	882	112	37	4	842	699800925	699800058	1.280000e-179	640.0
12	TraesCS7A01G413600	chr2A	80.230	870	107	43	4	837	110869323	110868483	1.010000e-165	593.0
13	TraesCS7A01G413600	chr5D	82.225	827	97	32	50	836	9590764	9591580	0.000000e+00	667.0
14	TraesCS7A01G413600	chr5A	80.626	831	103	38	50	836	641693530	641694346	1.310000e-164	590.0
15	TraesCS7A01G413600	chr4B	80.340	824	113	34	50	840	18000518	18001325	2.830000e-161	579.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G413600	chr7A	604378323	604382551	4228	False	7810	7810	100.000	1	4229	1	chr7A.!!$F1	4228
1	TraesCS7A01G413600	chr7A	729586674	729587489	815	True	638	638	81.468	39	836	1	chr7A.!!$R1	797
2	TraesCS7A01G413600	chr7D	524314739	524318135	3396	False	5426	5426	95.543	838	4229	1	chr7D.!!$F3	3391
3	TraesCS7A01G413600	chr7D	523544609	523545346	737	False	900	900	88.664	922	1662	1	chr7D.!!$F2	740
4	TraesCS7A01G413600	chr7D	71633794	71634645	851	False	658	658	81.443	4	836	1	chr7D.!!$F1	832
5	TraesCS7A01G413600	chr7B	560513760	560517112	3352	False	5210	5210	94.760	878	4229	1	chr7B.!!$F2	3351
6	TraesCS7A01G413600	chr7B	559630142	559630732	590	False	664	664	86.993	1070	1659	1	chr7B.!!$F1	589
7	TraesCS7A01G413600	chr6A	74151601	74152185	584	False	924	924	95.556	845	1415	1	chr6A.!!$F1	570
8	TraesCS7A01G413600	chr1A	139556881	139557727	846	True	721	721	82.679	4	836	1	chr1A.!!$R1	832
9	TraesCS7A01G413600	chr2A	38756777	38757637	860	True	689	689	81.776	4	836	1	chr2A.!!$R1	832
10	TraesCS7A01G413600	chr2A	699800058	699800925	867	True	640	640	80.839	4	842	1	chr2A.!!$R3	838
11	TraesCS7A01G413600	chr2A	110868483	110869323	840	True	593	593	80.230	4	837	1	chr2A.!!$R2	833
12	TraesCS7A01G413600	chr5D	9590764	9591580	816	False	667	667	82.225	50	836	1	chr5D.!!$F1	786
13	TraesCS7A01G413600	chr5A	641693530	641694346	816	False	590	590	80.626	50	836	1	chr5A.!!$F1	786
14	TraesCS7A01G413600	chr4B	18000518	18001325	807	False	579	579	80.340	50	840	1	chr4B.!!$F1	790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
761	832	0.036164	AGCGCCCAAAGTATGACACA	59.964	50.0	2.29	0.0	0.00	3.72	F
2279	2377	0.249911	GTGGAAGAGGCGACTGTTGT	60.250	55.0	4.87	0.0	45.21	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2506	2604	0.963355	TGCTCAATTTGGGGGCGTAC	60.963	55.0	0.00	0.0	0.00	3.67	R
3235	3333	0.321653	AGGACCAGCGCCTTACAAAG	60.322	55.0	2.29	0.0	29.44	2.77	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
137	142	2.744202	GTGCCTCTCACGAAATCACAAT	59.256	45.455	0.00	0.00	35.76	2.71
149	154	0.807667	ATCACAATCGTGCCTCTCGC	60.808	55.000	0.00	0.00	43.28	5.03
172	177	3.057946	GGAAGCAAAACCATGACTCTCAC	60.058	47.826	0.00	0.00	0.00	3.51
173	178	3.213206	AGCAAAACCATGACTCTCACA	57.787	42.857	0.00	0.00	0.00	3.58
180	186	4.013267	ACCATGACTCTCACAAAAGGAG	57.987	45.455	0.00	0.00	0.00	3.69
258	266	0.830444	AAGCACACCCGTACCTCTCA	60.830	55.000	0.00	0.00	0.00	3.27
325	345	0.937304	TGACTCTCGCAAAAGCACAC	59.063	50.000	0.00	0.00	0.00	3.82
326	346	1.221414	GACTCTCGCAAAAGCACACT	58.779	50.000	0.00	0.00	0.00	3.55
328	348	1.220529	CTCTCGCAAAAGCACACTCA	58.779	50.000	0.00	0.00	0.00	3.41
461	495	1.264288	GGAAGCAAAACCGTGACTCTG	59.736	52.381	0.00	0.00	0.00	3.35
462	496	0.663153	AAGCAAAACCGTGACTCTGC	59.337	50.000	0.00	0.00	0.00	4.26
463	497	1.082756	GCAAAACCGTGACTCTGCG	60.083	57.895	0.00	0.00	0.00	5.18
464	498	1.495584	GCAAAACCGTGACTCTGCGA	61.496	55.000	0.00	0.00	0.00	5.10
467	501	1.217882	AAACCGTGACTCTGCGAAAG	58.782	50.000	0.00	0.00	0.00	2.62
523	572	2.050351	ACGACCGTGACTCTTGCG	60.050	61.111	0.00	0.00	0.00	4.85
535	584	3.128349	GACTCTTGCGAAAGTACAACCA	58.872	45.455	2.29	0.00	0.00	3.67
551	600	2.185350	CATGCCTCTCGCGGAAGT	59.815	61.111	6.13	0.00	42.08	3.01
569	619	1.202770	AGTAAAACCGTGCCTCTTGCT	60.203	47.619	0.00	0.00	42.00	3.91
649	714	3.064931	CGAAAAGCTAAAGAAGACCGGT	58.935	45.455	6.92	6.92	0.00	5.28
761	832	0.036164	AGCGCCCAAAGTATGACACA	59.964	50.000	2.29	0.00	0.00	3.72
770	841	5.481105	CCAAAGTATGACACATGGCAAATT	58.519	37.500	0.00	0.00	36.16	1.82
809	880	3.084579	GCTGATCGTTGCGAGGTG	58.915	61.111	0.00	0.00	39.91	4.00
814	891	1.945354	GATCGTTGCGAGGTGGGAGA	61.945	60.000	0.00	0.00	39.91	3.71
829	906	2.753452	TGGGAGAGCTCGTTAACTAGTG	59.247	50.000	8.37	0.00	0.00	2.74
947	1031	1.185618	ACAGAAGCACGAGCCCACTA	61.186	55.000	0.00	0.00	43.56	2.74
956	1054	3.009723	CACGAGCCCACTACATCAAAAT	58.990	45.455	0.00	0.00	0.00	1.82
1274	1372	0.613853	CACCCGTTCCTCCTCTACCA	60.614	60.000	0.00	0.00	0.00	3.25
1454	1552	3.367806	CCTCTCATCCATATGTACGCTGG	60.368	52.174	1.24	2.57	34.50	4.85
1460	1558	1.202639	CCATATGTACGCTGGGCTTGA	60.203	52.381	1.24	0.00	0.00	3.02
1679	1777	0.961019	GCTGTGGATTGCTTCAACCA	59.039	50.000	0.00	0.00	0.00	3.67
1768	1866	4.221482	AGCTGAAGGATTTGGATTTTGGAC	59.779	41.667	0.00	0.00	0.00	4.02
1865	1963	3.871775	CCAAGTGTGGTGACATTGC	57.128	52.632	0.00	0.00	46.14	3.56
1867	1965	1.321474	CAAGTGTGGTGACATTGCCT	58.679	50.000	0.00	0.00	46.14	4.75
1991	2089	2.613133	GCTCTCTGTTTGATCAGATGGC	59.387	50.000	0.00	0.00	42.47	4.40
2220	2318	5.316987	CTGGTGGAAAGAGATGTTTACCTT	58.683	41.667	0.00	0.00	0.00	3.50
2279	2377	0.249911	GTGGAAGAGGCGACTGTTGT	60.250	55.000	4.87	0.00	45.21	3.32
2431	2529	7.814107	CCAATTCAGTTACATACATTGCTGTTT	59.186	33.333	0.00	0.00	36.79	2.83
2526	2624	0.033601	TACGCCCCCAAATTGAGCAT	60.034	50.000	0.00	0.00	0.00	3.79
2653	2751	4.081752	CCATCTTGAGTGCTTGTAGAGTCT	60.082	45.833	0.00	0.00	0.00	3.24
2675	2773	2.747989	ACAAGAACGTCGATCTAGCTCA	59.252	45.455	5.37	0.00	0.00	4.26
2823	2921	0.606673	GGGGTGTGAAGAAGACTGCC	60.607	60.000	0.00	0.00	0.00	4.85
2866	2964	2.094675	CTGGGGAGGTGCATAAGTTTG	58.905	52.381	0.00	0.00	0.00	2.93
2883	2981	3.070446	AGTTTGTAGTTGGTGACCGATCA	59.930	43.478	0.00	0.00	0.00	2.92
2894	2992	1.148157	GACCGATCACATCCACGCAG	61.148	60.000	0.00	0.00	0.00	5.18
3072	3170	5.128827	CCTCATTAGTCTAGCACCAAACCTA	59.871	44.000	0.00	0.00	0.00	3.08
3105	3203	4.030913	TCATAAAGAATCTCCGGGTCTGT	58.969	43.478	0.00	0.00	0.00	3.41
3235	3333	5.119898	TGCAATGATTTTTGGTGATTAACGC	59.880	36.000	0.00	0.00	0.00	4.84
3288	3386	6.016276	GCTTGAAGGATGAGGAAACACTAAAA	60.016	38.462	0.00	0.00	0.00	1.52
3376	3474	3.189080	TGTTCTCTTCGATGTGCCATTTG	59.811	43.478	0.00	0.00	0.00	2.32
3385	3483	4.081697	TCGATGTGCCATTTGAGTTAGAGA	60.082	41.667	0.00	0.00	0.00	3.10
3403	3501	8.637986	AGTTAGAGAGATTACTCATGTTCATCC	58.362	37.037	0.00	0.00	44.79	3.51
3415	3513	4.019950	TCATGTTCATCCTCTGAGAGCAAA	60.020	41.667	6.17	0.00	34.68	3.68
3417	3515	3.580022	TGTTCATCCTCTGAGAGCAAAGA	59.420	43.478	6.17	0.00	34.68	2.52
3501	3603	1.550327	ATGAGCTCCTCTTCACACGA	58.450	50.000	12.15	0.00	0.00	4.35
3511	3613	5.410924	TCCTCTTCACACGATAACATTCAG	58.589	41.667	0.00	0.00	0.00	3.02
3556	3658	3.599343	TCGAACTGATGGAAGTGAATGG	58.401	45.455	0.00	0.00	0.00	3.16
3583	3685	4.033358	CCATGTTCTTCTCGTGTAATCTGC	59.967	45.833	0.00	0.00	0.00	4.26
3588	3690	3.195610	TCTTCTCGTGTAATCTGCATGGT	59.804	43.478	0.00	0.00	0.00	3.55
3605	3707	2.593026	TGGTTGCCCTTGTTTCCTAAG	58.407	47.619	0.00	0.00	0.00	2.18
3614	3716	3.319122	CCTTGTTTCCTAAGCTGCAGTTT	59.681	43.478	20.07	20.07	0.00	2.66
3619	3721	2.771089	TCCTAAGCTGCAGTTTCTGTG	58.229	47.619	19.79	8.48	33.43	3.66
3622	3724	1.312815	AAGCTGCAGTTTCTGTGACC	58.687	50.000	16.64	0.00	33.43	4.02
3641	3743	4.022416	TGACCTGTTGCCATGTTAATGAAC	60.022	41.667	0.00	0.00	35.67	3.18
3652	3754	0.407528	TTAATGAACAGGCCAGCCCA	59.592	50.000	5.01	0.00	36.58	5.36
3655	3757	1.207488	ATGAACAGGCCAGCCCAGTA	61.207	55.000	5.01	0.00	36.58	2.74
3658	3760	1.715019	AACAGGCCAGCCCAGTAACA	61.715	55.000	5.01	0.00	36.58	2.41
3661	3763	2.746277	GCCAGCCCAGTAACACCG	60.746	66.667	0.00	0.00	0.00	4.94
3675	3778	0.040794	ACACCGAGGGTAAGTAGGCT	59.959	55.000	0.00	0.00	32.11	4.58
3692	3795	6.664714	AGTAGGCTGAAGTCAATAGTCTAGA	58.335	40.000	0.00	0.00	30.04	2.43
3764	3871	2.380064	TTCTGTGGCATTTCAGGGTT	57.620	45.000	4.04	0.00	33.13	4.11
3765	3872	1.619654	TCTGTGGCATTTCAGGGTTG	58.380	50.000	4.04	0.00	33.13	3.77
3825	3932	0.811616	CAGCCGTAGTTCCATGCTCC	60.812	60.000	0.00	0.00	0.00	4.70
3827	3934	0.179045	GCCGTAGTTCCATGCTCCAT	60.179	55.000	0.00	0.00	0.00	3.41
3832	3939	0.622136	AGTTCCATGCTCCATGCTCA	59.378	50.000	0.00	0.00	40.20	4.26
3840	3947	1.153208	CTCCATGCTCAGTGAGGCC	60.153	63.158	21.54	6.55	0.00	5.19
3866	3973	4.098501	GTGGAATTCCTATGGCTTCCTTTG	59.901	45.833	24.73	0.00	36.14	2.77
4076	4186	3.233231	TGCAAACCAGCAAGCCCC	61.233	61.111	0.00	0.00	42.46	5.80
4077	4187	2.919328	GCAAACCAGCAAGCCCCT	60.919	61.111	0.00	0.00	0.00	4.79
4078	4188	3.053828	CAAACCAGCAAGCCCCTG	58.946	61.111	0.00	0.00	0.00	4.45
4079	4189	2.919328	AAACCAGCAAGCCCCTGC	60.919	61.111	0.00	0.00	42.97	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	76	2.914756	AAAACCCGTGCTCCCGGTTT	62.915	55.000	0.00	10.40	46.66	3.27
137	142	4.116328	CTTCCGCGAGAGGCACGA	62.116	66.667	8.23	0.00	43.84	4.35
149	154	2.154462	AGAGTCATGGTTTTGCTTCCG	58.846	47.619	0.00	0.00	0.00	4.30
246	254	2.443887	TTTTTCGTGAGAGGTACGGG	57.556	50.000	0.00	0.00	43.69	5.28
316	336	2.157738	GAGAGGCATGAGTGTGCTTTT	58.842	47.619	0.00	0.00	44.45	2.27
325	345	1.591059	CTTCCGCGAGAGGCATGAG	60.591	63.158	8.23	0.00	43.84	2.90
326	346	2.496341	CTTCCGCGAGAGGCATGA	59.504	61.111	8.23	0.00	43.84	3.07
395	421	1.125202	GAGAGCGTGCTTCTCGAAAAC	59.875	52.381	0.00	0.00	35.79	2.43
427	460	3.997064	CTTCCGCGAGAGGCACTGG	62.997	68.421	8.23	0.00	41.55	4.00
429	463	4.443266	GCTTCCGCGAGAGGCACT	62.443	66.667	20.89	0.00	46.54	4.40
523	572	2.673368	CGAGAGGCATGGTTGTACTTTC	59.327	50.000	0.00	0.00	0.00	2.62
535	584	0.535335	TTTACTTCCGCGAGAGGCAT	59.465	50.000	8.23	0.00	43.84	4.40
626	691	3.123116	CCGGTCTTCTTTAGCTTTTCGAC	59.877	47.826	0.00	0.00	0.00	4.20
697	763	2.311701	CCGCACGTGTTTTCGGCTA	61.312	57.895	18.38	0.00	35.20	3.93
753	824	3.762823	TCAGCAATTTGCCATGTGTCATA	59.237	39.130	17.51	0.00	46.52	2.15
754	825	2.563620	TCAGCAATTTGCCATGTGTCAT	59.436	40.909	17.51	0.00	46.52	3.06
755	826	1.962100	TCAGCAATTTGCCATGTGTCA	59.038	42.857	17.51	0.00	46.52	3.58
770	841	4.590968	GTCACTCGACATGCTCTCAGCA	62.591	54.545	0.00	0.00	44.81	4.41
809	880	2.099427	CCACTAGTTAACGAGCTCTCCC	59.901	54.545	14.82	0.00	0.00	4.30
814	891	1.477295	GGAGCCACTAGTTAACGAGCT	59.523	52.381	14.82	11.92	0.00	4.09
829	906	2.165641	CGGACTTTTTATTTGGGGAGCC	59.834	50.000	0.00	0.00	0.00	4.70
947	1031	2.554893	ACGGCCGTGTTTATTTTGATGT	59.445	40.909	33.75	0.00	0.00	3.06
956	1054	2.137523	GAAGAAAGACGGCCGTGTTTA	58.862	47.619	42.22	0.00	40.83	2.01
1356	1454	3.083997	ATCCGGCACAGGAGGACC	61.084	66.667	0.00	0.00	44.55	4.46
1653	1751	1.676635	GCAATCCACAGCCTCAGCA	60.677	57.895	0.00	0.00	43.56	4.41
1679	1777	2.418197	GCAATGCCATCAGAAAGCATGT	60.418	45.455	10.48	0.98	46.17	3.21
1865	1963	1.069049	CAAAAACCTCCCTTGCACAGG	59.931	52.381	7.69	7.69	43.49	4.00
1867	1965	2.151502	TCAAAAACCTCCCTTGCACA	57.848	45.000	0.00	0.00	0.00	4.57
1991	2089	2.314323	TGTGATGATGTCATGGTCCG	57.686	50.000	0.00	0.00	39.48	4.79
2220	2318	1.419381	TGTCCAAGAGTGCAGTACCA	58.581	50.000	0.00	0.00	0.00	3.25
2279	2377	6.348498	TCTCTCACACTCATCTGTTTGAAAA	58.652	36.000	0.00	0.00	0.00	2.29
2506	2604	0.963355	TGCTCAATTTGGGGGCGTAC	60.963	55.000	0.00	0.00	0.00	3.67
2526	2624	5.048294	CAGCAAATCTATCATGCAGCCATAA	60.048	40.000	0.00	0.00	42.45	1.90
2653	2751	3.937079	TGAGCTAGATCGACGTTCTTGTA	59.063	43.478	13.30	0.00	0.00	2.41
2675	2773	4.948004	TCAGAAGATGATCTGCAGCATTTT	59.052	37.500	9.47	9.20	45.21	1.82
2823	2921	1.752501	CGGCAATCGAGCTGTAACCG	61.753	60.000	0.00	0.00	42.43	4.44
2851	2949	4.760204	ACCAACTACAAACTTATGCACCTC	59.240	41.667	0.00	0.00	0.00	3.85
2883	2981	0.904649	TCTCCATTCTGCGTGGATGT	59.095	50.000	0.00	0.00	44.34	3.06
2894	2992	8.571336	CCTCCAACATTACAATAATCTCCATTC	58.429	37.037	0.00	0.00	0.00	2.67
3072	3170	7.162082	GGAGATTCTTTATGATATGAACCGGT	58.838	38.462	0.00	0.00	0.00	5.28
3105	3203	1.410050	TTGCAGAGTGGCAGTCCTCA	61.410	55.000	18.47	13.35	45.88	3.86
3235	3333	0.321653	AGGACCAGCGCCTTACAAAG	60.322	55.000	2.29	0.00	29.44	2.77
3303	3401	5.171476	CGACCTGAAAGCTAATCTGAAGAA	58.829	41.667	7.60	0.00	0.00	2.52
3312	3410	3.596214	GGAATCACGACCTGAAAGCTAA	58.404	45.455	0.00	0.00	30.60	3.09
3376	3474	9.677567	GATGAACATGAGTAATCTCTCTAACTC	57.322	37.037	0.00	0.00	40.98	3.01
3385	3483	6.838090	TCTCAGAGGATGAACATGAGTAATCT	59.162	38.462	0.00	0.00	37.52	2.40
3403	3501	7.542890	TGATAAAGTAGTCTTTGCTCTCAGAG	58.457	38.462	0.00	0.00	42.86	3.35
3415	3513	8.208575	ACCTTCTTTTCCTGATAAAGTAGTCT	57.791	34.615	0.00	0.00	34.86	3.24
3417	3515	7.974504	TGACCTTCTTTTCCTGATAAAGTAGT	58.025	34.615	0.00	0.00	34.86	2.73
3501	3603	5.586243	GGACTATGTGTGTGCTGAATGTTAT	59.414	40.000	0.00	0.00	0.00	1.89
3511	3613	1.442769	CACCTGGACTATGTGTGTGC	58.557	55.000	0.00	0.00	0.00	4.57
3556	3658	7.168302	CAGATTACACGAGAAGAACATGGATAC	59.832	40.741	0.00	0.00	0.00	2.24
3588	3690	2.238521	CAGCTTAGGAAACAAGGGCAA	58.761	47.619	0.00	0.00	0.00	4.52
3605	3707	0.590195	CAGGTCACAGAAACTGCAGC	59.410	55.000	15.27	0.00	34.37	5.25
3622	3724	4.487948	CCTGTTCATTAACATGGCAACAG	58.512	43.478	0.00	5.82	44.43	3.16
3641	3743	1.675641	GTGTTACTGGGCTGGCCTG	60.676	63.158	22.70	22.70	36.10	4.85
3652	3754	3.359950	CCTACTTACCCTCGGTGTTACT	58.640	50.000	0.00	0.00	36.19	2.24
3655	3757	0.900421	GCCTACTTACCCTCGGTGTT	59.100	55.000	0.00	0.00	36.19	3.32
3658	3760	0.333993	TCAGCCTACTTACCCTCGGT	59.666	55.000	0.00	0.00	40.16	4.69
3661	3763	3.097614	TGACTTCAGCCTACTTACCCTC	58.902	50.000	0.00	0.00	0.00	4.30
3675	3778	6.194967	TGTCCCATCTAGACTATTGACTTCA	58.805	40.000	0.00	0.00	35.21	3.02
3692	3795	6.191657	TGTTCAGCAATCTATATGTCCCAT	57.808	37.500	0.00	0.00	0.00	4.00
3706	3809	2.598394	GGCAGGCCTGTTCAGCAA	60.598	61.111	32.81	0.00	0.00	3.91
3708	3811	4.666253	TGGGCAGGCCTGTTCAGC	62.666	66.667	32.81	18.72	36.10	4.26
3764	3871	5.070001	CCACCTCCTTTGTCTACATTTTCA	58.930	41.667	0.00	0.00	0.00	2.69
3765	3872	4.082733	GCCACCTCCTTTGTCTACATTTTC	60.083	45.833	0.00	0.00	0.00	2.29
3825	3932	0.322277	ACTTGGCCTCACTGAGCATG	60.322	55.000	3.32	0.00	0.00	4.06
3827	3934	1.071987	CACTTGGCCTCACTGAGCA	59.928	57.895	3.32	0.00	0.00	4.26
3832	3939	1.272147	GGAATTCCACTTGGCCTCACT	60.272	52.381	20.04	0.00	35.64	3.41
3840	3947	3.633986	GGAAGCCATAGGAATTCCACTTG	59.366	47.826	26.22	18.18	38.86	3.16
3886	3993	2.596263	GCTTCGTAGCTCCACAAAAC	57.404	50.000	6.80	0.00	44.27	2.43
4080	4190	1.007238	TCTAGAGAAGTCACCCAGGGG	59.993	57.143	11.37	6.87	42.03	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.