Multiple sequence alignment - TraesCS7A01G412900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G412900 chr7A 100.000 2585 0 0 1 2585 603587370 603589954 0.000000e+00 4774
1 TraesCS7A01G412900 chr7A 95.690 116 3 1 1051 1166 269093434 269093321 4.390000e-43 185
2 TraesCS7A01G412900 chr1A 93.081 2009 89 26 597 2567 9590932 9592928 0.000000e+00 2894
3 TraesCS7A01G412900 chr3D 91.908 2039 100 25 600 2585 458606495 458604469 0.000000e+00 2791
4 TraesCS7A01G412900 chr3D 80.472 635 79 25 1745 2368 488862366 488861766 6.560000e-121 444
5 TraesCS7A01G412900 chr3D 81.560 141 22 4 367 506 535686831 535686968 2.100000e-21 113
6 TraesCS7A01G412900 chr2D 82.094 659 104 10 1211 1858 114532689 114533344 3.760000e-153 551
7 TraesCS7A01G412900 chr2B 81.720 651 102 12 1211 1848 164937211 164937857 6.340000e-146 527
8 TraesCS7A01G412900 chr2B 80.220 637 77 27 1745 2368 535264193 535264793 1.420000e-117 433
9 TraesCS7A01G412900 chr2A 81.118 662 107 13 1211 1858 115753511 115754168 4.930000e-142 514
10 TraesCS7A01G412900 chrUn 99.606 254 0 1 1 253 367843247 367842994 1.810000e-126 462
11 TraesCS7A01G412900 chrUn 99.606 254 0 1 1 253 430947996 430947743 1.810000e-126 462
12 TraesCS7A01G412900 chrUn 98.819 254 2 1 1 253 367884254 367884507 3.920000e-123 451
13 TraesCS7A01G412900 chr6B 99.606 254 0 1 1 253 599851644 599851391 1.810000e-126 462
14 TraesCS7A01G412900 chr6B 99.213 254 1 1 1 253 599865813 599865560 8.430000e-125 457
15 TraesCS7A01G412900 chr6B 84.718 301 27 10 1860 2142 551950154 551950453 1.510000e-72 283
16 TraesCS7A01G412900 chr6B 80.282 142 23 5 364 503 629121931 629121793 4.550000e-18 102
17 TraesCS7A01G412900 chr5B 85.045 448 59 7 2141 2585 547184418 547184860 1.410000e-122 449
18 TraesCS7A01G412900 chr5B 80.442 634 80 23 1745 2368 468652469 468653068 6.560000e-121 444
19 TraesCS7A01G412900 chr5B 84.375 448 62 7 2141 2585 547200329 547200771 1.420000e-117 433
20 TraesCS7A01G412900 chr6D 80.000 635 82 23 1745 2368 47024114 47024714 6.610000e-116 427
21 TraesCS7A01G412900 chr7B 83.599 439 53 6 2150 2585 108544109 108544531 6.700000e-106 394
22 TraesCS7A01G412900 chr7B 92.913 254 17 1 1 254 10160937 10161189 4.060000e-98 368
23 TraesCS7A01G412900 chr7D 83.333 444 55 9 2144 2585 146187427 146187853 2.410000e-105 392
24 TraesCS7A01G412900 chr4D 84.053 301 29 10 1860 2142 57679292 57679591 3.280000e-69 272
25 TraesCS7A01G412900 chr4D 94.366 71 4 0 1051 1121 87261637 87261707 2.720000e-20 110
26 TraesCS7A01G412900 chr4B 84.053 301 29 10 1860 2142 86076764 86077063 3.280000e-69 272
27 TraesCS7A01G412900 chr4B 95.652 115 5 0 1052 1166 483093181 483093067 4.390000e-43 185
28 TraesCS7A01G412900 chr4B 94.521 73 2 2 1051 1123 65079259 65079329 7.560000e-21 111
29 TraesCS7A01G412900 chr4B 94.521 73 2 2 1051 1123 65496926 65496996 7.560000e-21 111
30 TraesCS7A01G412900 chr4A 96.552 116 4 0 1051 1166 353126782 353126667 2.630000e-45 193
31 TraesCS7A01G412900 chr4A 95.690 116 5 0 1051 1166 577729412 577729527 1.220000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G412900 chr7A 603587370 603589954 2584 False 4774 4774 100.000 1 2585 1 chr7A.!!$F1 2584
1 TraesCS7A01G412900 chr1A 9590932 9592928 1996 False 2894 2894 93.081 597 2567 1 chr1A.!!$F1 1970
2 TraesCS7A01G412900 chr3D 458604469 458606495 2026 True 2791 2791 91.908 600 2585 1 chr3D.!!$R1 1985
3 TraesCS7A01G412900 chr3D 488861766 488862366 600 True 444 444 80.472 1745 2368 1 chr3D.!!$R2 623
4 TraesCS7A01G412900 chr2D 114532689 114533344 655 False 551 551 82.094 1211 1858 1 chr2D.!!$F1 647
5 TraesCS7A01G412900 chr2B 164937211 164937857 646 False 527 527 81.720 1211 1848 1 chr2B.!!$F1 637
6 TraesCS7A01G412900 chr2B 535264193 535264793 600 False 433 433 80.220 1745 2368 1 chr2B.!!$F2 623
7 TraesCS7A01G412900 chr2A 115753511 115754168 657 False 514 514 81.118 1211 1858 1 chr2A.!!$F1 647
8 TraesCS7A01G412900 chr5B 468652469 468653068 599 False 444 444 80.442 1745 2368 1 chr5B.!!$F1 623
9 TraesCS7A01G412900 chr6D 47024114 47024714 600 False 427 427 80.000 1745 2368 1 chr6D.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.027979 CACATTAAGGTGCGCGGATG 59.972 55.0 8.83 0.76 31.1 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2043 0.689623 ACTTCAGGGCTCTTGGACAG 59.31 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.463879 CACCGGCCAGCTCTCCTG 62.464 72.222 0.00 0.00 41.41 3.86
45 46 4.869440 CCAGCTCTCCTGCGCGAG 62.869 72.222 12.10 4.17 40.36 5.03
46 47 4.869440 CAGCTCTCCTGCGCGAGG 62.869 72.222 12.10 14.50 44.45 4.63
69 70 3.123620 GCCGAGCTTGCACAGGAG 61.124 66.667 4.46 0.00 0.00 3.69
70 71 2.435586 CCGAGCTTGCACAGGAGG 60.436 66.667 0.00 0.00 0.00 4.30
71 72 3.123620 CGAGCTTGCACAGGAGGC 61.124 66.667 0.00 0.00 0.00 4.70
72 73 2.749441 GAGCTTGCACAGGAGGCC 60.749 66.667 0.00 0.00 0.00 5.19
73 74 3.255397 AGCTTGCACAGGAGGCCT 61.255 61.111 3.86 3.86 0.00 5.19
74 75 2.749441 GCTTGCACAGGAGGCCTC 60.749 66.667 25.59 25.59 0.00 4.70
75 76 2.435586 CTTGCACAGGAGGCCTCG 60.436 66.667 26.36 16.01 0.00 4.63
76 77 4.704833 TTGCACAGGAGGCCTCGC 62.705 66.667 26.36 22.83 31.75 5.03
98 99 4.069232 CGCCCTCGGTCAAGCTGA 62.069 66.667 0.00 0.00 0.00 4.26
99 100 2.586792 GCCCTCGGTCAAGCTGAT 59.413 61.111 0.00 0.00 0.00 2.90
100 101 1.817099 GCCCTCGGTCAAGCTGATG 60.817 63.158 0.00 0.00 0.00 3.07
101 102 1.900351 CCCTCGGTCAAGCTGATGA 59.100 57.895 0.00 0.00 0.00 2.92
102 103 0.467384 CCCTCGGTCAAGCTGATGAT 59.533 55.000 0.00 0.00 0.00 2.45
103 104 1.134280 CCCTCGGTCAAGCTGATGATT 60.134 52.381 0.00 0.00 0.00 2.57
104 105 1.938577 CCTCGGTCAAGCTGATGATTG 59.061 52.381 0.00 0.00 40.58 2.67
105 106 1.329906 CTCGGTCAAGCTGATGATTGC 59.670 52.381 0.00 0.00 39.22 3.56
106 107 1.089112 CGGTCAAGCTGATGATTGCA 58.911 50.000 0.00 0.00 39.22 4.08
107 108 1.202110 CGGTCAAGCTGATGATTGCAC 60.202 52.381 0.00 0.00 39.22 4.57
108 109 1.133790 GGTCAAGCTGATGATTGCACC 59.866 52.381 0.00 0.00 39.22 5.01
109 110 1.133790 GTCAAGCTGATGATTGCACCC 59.866 52.381 0.00 0.00 39.22 4.61
110 111 1.005097 TCAAGCTGATGATTGCACCCT 59.995 47.619 0.00 0.00 39.22 4.34
111 112 1.404391 CAAGCTGATGATTGCACCCTC 59.596 52.381 0.00 0.00 32.67 4.30
112 113 0.106819 AGCTGATGATTGCACCCTCC 60.107 55.000 0.00 0.00 0.00 4.30
113 114 0.394762 GCTGATGATTGCACCCTCCA 60.395 55.000 0.00 0.00 0.00 3.86
114 115 1.753141 GCTGATGATTGCACCCTCCAT 60.753 52.381 0.00 0.00 0.00 3.41
115 116 2.662866 CTGATGATTGCACCCTCCATT 58.337 47.619 0.00 0.00 0.00 3.16
116 117 3.028850 CTGATGATTGCACCCTCCATTT 58.971 45.455 0.00 0.00 0.00 2.32
117 118 3.443052 TGATGATTGCACCCTCCATTTT 58.557 40.909 0.00 0.00 0.00 1.82
118 119 3.448301 TGATGATTGCACCCTCCATTTTC 59.552 43.478 0.00 0.00 0.00 2.29
119 120 2.178580 TGATTGCACCCTCCATTTTCC 58.821 47.619 0.00 0.00 0.00 3.13
120 121 2.178580 GATTGCACCCTCCATTTTCCA 58.821 47.619 0.00 0.00 0.00 3.53
121 122 2.094100 TTGCACCCTCCATTTTCCAA 57.906 45.000 0.00 0.00 0.00 3.53
122 123 2.094100 TGCACCCTCCATTTTCCAAA 57.906 45.000 0.00 0.00 0.00 3.28
123 124 1.691434 TGCACCCTCCATTTTCCAAAC 59.309 47.619 0.00 0.00 0.00 2.93
124 125 1.970640 GCACCCTCCATTTTCCAAACT 59.029 47.619 0.00 0.00 0.00 2.66
125 126 2.289010 GCACCCTCCATTTTCCAAACTG 60.289 50.000 0.00 0.00 0.00 3.16
126 127 1.970640 ACCCTCCATTTTCCAAACTGC 59.029 47.619 0.00 0.00 0.00 4.40
127 128 1.969923 CCCTCCATTTTCCAAACTGCA 59.030 47.619 0.00 0.00 0.00 4.41
128 129 2.028748 CCCTCCATTTTCCAAACTGCAG 60.029 50.000 13.48 13.48 0.00 4.41
129 130 2.611224 CCTCCATTTTCCAAACTGCAGC 60.611 50.000 15.27 0.00 0.00 5.25
130 131 2.298163 CTCCATTTTCCAAACTGCAGCT 59.702 45.455 15.27 0.00 0.00 4.24
131 132 2.699846 TCCATTTTCCAAACTGCAGCTT 59.300 40.909 15.27 4.71 0.00 3.74
132 133 3.062042 CCATTTTCCAAACTGCAGCTTC 58.938 45.455 15.27 0.00 0.00 3.86
133 134 3.243975 CCATTTTCCAAACTGCAGCTTCT 60.244 43.478 15.27 0.00 0.00 2.85
134 135 4.022068 CCATTTTCCAAACTGCAGCTTCTA 60.022 41.667 15.27 0.00 0.00 2.10
135 136 4.568152 TTTTCCAAACTGCAGCTTCTAC 57.432 40.909 15.27 0.00 0.00 2.59
136 137 2.185004 TCCAAACTGCAGCTTCTACC 57.815 50.000 15.27 0.00 0.00 3.18
137 138 1.699634 TCCAAACTGCAGCTTCTACCT 59.300 47.619 15.27 0.00 0.00 3.08
138 139 2.106511 TCCAAACTGCAGCTTCTACCTT 59.893 45.455 15.27 0.00 0.00 3.50
139 140 2.485814 CCAAACTGCAGCTTCTACCTTC 59.514 50.000 15.27 0.00 0.00 3.46
140 141 2.481289 AACTGCAGCTTCTACCTTCC 57.519 50.000 15.27 0.00 0.00 3.46
141 142 1.352083 ACTGCAGCTTCTACCTTCCA 58.648 50.000 15.27 0.00 0.00 3.53
142 143 1.277557 ACTGCAGCTTCTACCTTCCAG 59.722 52.381 15.27 0.00 0.00 3.86
143 144 0.036010 TGCAGCTTCTACCTTCCAGC 60.036 55.000 0.00 0.00 0.00 4.85
144 145 0.746204 GCAGCTTCTACCTTCCAGCC 60.746 60.000 0.00 0.00 32.25 4.85
145 146 0.615331 CAGCTTCTACCTTCCAGCCA 59.385 55.000 0.00 0.00 32.25 4.75
146 147 0.908198 AGCTTCTACCTTCCAGCCAG 59.092 55.000 0.00 0.00 32.25 4.85
147 148 0.615850 GCTTCTACCTTCCAGCCAGT 59.384 55.000 0.00 0.00 0.00 4.00
148 149 1.831736 GCTTCTACCTTCCAGCCAGTA 59.168 52.381 0.00 0.00 0.00 2.74
149 150 2.436173 GCTTCTACCTTCCAGCCAGTAT 59.564 50.000 0.00 0.00 0.00 2.12
150 151 3.641906 GCTTCTACCTTCCAGCCAGTATA 59.358 47.826 0.00 0.00 0.00 1.47
151 152 4.284746 GCTTCTACCTTCCAGCCAGTATAT 59.715 45.833 0.00 0.00 0.00 0.86
152 153 5.221742 GCTTCTACCTTCCAGCCAGTATATT 60.222 44.000 0.00 0.00 0.00 1.28
153 154 6.689177 GCTTCTACCTTCCAGCCAGTATATTT 60.689 42.308 0.00 0.00 0.00 1.40
154 155 7.472945 GCTTCTACCTTCCAGCCAGTATATTTA 60.473 40.741 0.00 0.00 0.00 1.40
155 156 8.506196 TTCTACCTTCCAGCCAGTATATTTAT 57.494 34.615 0.00 0.00 0.00 1.40
156 157 9.610104 TTCTACCTTCCAGCCAGTATATTTATA 57.390 33.333 0.00 0.00 0.00 0.98
157 158 9.256228 TCTACCTTCCAGCCAGTATATTTATAG 57.744 37.037 0.00 0.00 0.00 1.31
158 159 6.712276 ACCTTCCAGCCAGTATATTTATAGC 58.288 40.000 0.00 0.00 0.00 2.97
159 160 5.812642 CCTTCCAGCCAGTATATTTATAGCG 59.187 44.000 0.00 0.00 0.00 4.26
160 161 4.755411 TCCAGCCAGTATATTTATAGCGC 58.245 43.478 0.00 0.00 0.00 5.92
161 162 4.221924 TCCAGCCAGTATATTTATAGCGCA 59.778 41.667 11.47 0.00 0.00 6.09
162 163 5.104941 TCCAGCCAGTATATTTATAGCGCAT 60.105 40.000 11.47 3.63 0.00 4.73
163 164 5.586243 CCAGCCAGTATATTTATAGCGCATT 59.414 40.000 11.47 0.00 0.00 3.56
164 165 6.094048 CCAGCCAGTATATTTATAGCGCATTT 59.906 38.462 11.47 0.00 0.00 2.32
165 166 7.279981 CCAGCCAGTATATTTATAGCGCATTTA 59.720 37.037 11.47 0.00 0.00 1.40
166 167 8.331022 CAGCCAGTATATTTATAGCGCATTTAG 58.669 37.037 11.47 0.00 0.00 1.85
167 168 7.011482 AGCCAGTATATTTATAGCGCATTTAGC 59.989 37.037 11.47 0.00 40.87 3.09
168 169 7.201609 GCCAGTATATTTATAGCGCATTTAGCA 60.202 37.037 11.47 0.00 46.13 3.49
169 170 8.116753 CCAGTATATTTATAGCGCATTTAGCAC 58.883 37.037 11.47 0.00 46.13 4.40
170 171 8.873830 CAGTATATTTATAGCGCATTTAGCACT 58.126 33.333 11.47 0.00 46.13 4.40
171 172 9.436957 AGTATATTTATAGCGCATTTAGCACTT 57.563 29.630 11.47 0.00 46.13 3.16
172 173 9.478019 GTATATTTATAGCGCATTTAGCACTTG 57.522 33.333 11.47 0.00 46.13 3.16
173 174 2.763249 ATAGCGCATTTAGCACTTGC 57.237 45.000 11.47 0.00 46.13 4.01
187 188 4.568152 GCACTTGCTGTTTCTTTAAGGA 57.432 40.909 0.00 0.00 38.21 3.36
188 189 4.932146 GCACTTGCTGTTTCTTTAAGGAA 58.068 39.130 0.00 0.00 38.21 3.36
189 190 5.348164 GCACTTGCTGTTTCTTTAAGGAAA 58.652 37.500 8.56 8.56 38.21 3.13
190 191 5.460091 GCACTTGCTGTTTCTTTAAGGAAAG 59.540 40.000 12.58 4.15 39.73 2.62
191 192 6.564328 CACTTGCTGTTTCTTTAAGGAAAGT 58.436 36.000 12.58 4.02 42.41 2.66
192 193 7.681065 GCACTTGCTGTTTCTTTAAGGAAAGTA 60.681 37.037 12.58 5.20 39.55 2.24
193 194 7.857885 CACTTGCTGTTTCTTTAAGGAAAGTAG 59.142 37.037 12.58 13.92 42.41 2.57
194 195 6.313744 TGCTGTTTCTTTAAGGAAAGTAGC 57.686 37.500 26.09 26.09 42.41 3.58
195 196 5.049680 TGCTGTTTCTTTAAGGAAAGTAGCG 60.050 40.000 26.48 12.81 42.71 4.26
196 197 5.352643 TGTTTCTTTAAGGAAAGTAGCGC 57.647 39.130 12.58 0.00 42.41 5.92
197 198 4.214758 TGTTTCTTTAAGGAAAGTAGCGCC 59.785 41.667 12.58 1.25 42.41 6.53
198 199 3.975168 TCTTTAAGGAAAGTAGCGCCT 57.025 42.857 2.29 0.00 42.41 5.52
199 200 3.596214 TCTTTAAGGAAAGTAGCGCCTG 58.404 45.455 2.29 0.00 42.41 4.85
200 201 2.396590 TTAAGGAAAGTAGCGCCTGG 57.603 50.000 2.29 0.00 31.06 4.45
201 202 1.272807 TAAGGAAAGTAGCGCCTGGT 58.727 50.000 2.29 0.00 31.06 4.00
202 203 0.400594 AAGGAAAGTAGCGCCTGGTT 59.599 50.000 2.29 0.00 31.06 3.67
203 204 0.400594 AGGAAAGTAGCGCCTGGTTT 59.599 50.000 2.29 0.00 0.00 3.27
204 205 1.202891 AGGAAAGTAGCGCCTGGTTTT 60.203 47.619 2.29 0.00 0.00 2.43
205 206 1.199327 GGAAAGTAGCGCCTGGTTTTC 59.801 52.381 2.29 7.78 0.00 2.29
206 207 1.877443 GAAAGTAGCGCCTGGTTTTCA 59.123 47.619 2.29 0.00 0.00 2.69
207 208 1.975660 AAGTAGCGCCTGGTTTTCAA 58.024 45.000 2.29 0.00 0.00 2.69
208 209 1.523758 AGTAGCGCCTGGTTTTCAAG 58.476 50.000 2.29 0.00 0.00 3.02
209 210 0.521735 GTAGCGCCTGGTTTTCAAGG 59.478 55.000 2.29 0.00 0.00 3.61
210 211 1.241315 TAGCGCCTGGTTTTCAAGGC 61.241 55.000 2.29 3.55 43.49 4.35
213 214 3.289128 GCCTGGTTTTCAAGGCAAC 57.711 52.632 8.78 0.00 45.99 4.17
214 215 0.597377 GCCTGGTTTTCAAGGCAACG 60.597 55.000 8.78 0.00 45.99 4.10
215 216 0.744281 CCTGGTTTTCAAGGCAACGT 59.256 50.000 0.00 0.00 46.39 3.99
216 217 1.950909 CCTGGTTTTCAAGGCAACGTA 59.049 47.619 0.00 0.00 46.39 3.57
217 218 2.359531 CCTGGTTTTCAAGGCAACGTAA 59.640 45.455 0.00 0.00 46.39 3.18
218 219 3.368495 CTGGTTTTCAAGGCAACGTAAC 58.632 45.455 0.00 0.00 46.39 2.50
219 220 2.099427 TGGTTTTCAAGGCAACGTAACC 59.901 45.455 4.50 4.50 46.39 2.85
220 221 2.099427 GGTTTTCAAGGCAACGTAACCA 59.901 45.455 9.26 0.00 46.39 3.67
221 222 3.110358 GTTTTCAAGGCAACGTAACCAC 58.890 45.455 9.26 0.00 46.39 4.16
253 254 7.982761 AAAAATGTGCAATGTTACCAATCAT 57.017 28.000 0.00 0.00 0.00 2.45
255 256 9.669887 AAAAATGTGCAATGTTACCAATCATAT 57.330 25.926 0.00 0.00 0.00 1.78
256 257 9.669887 AAAATGTGCAATGTTACCAATCATATT 57.330 25.926 0.00 0.00 0.00 1.28
260 261 9.579768 TGTGCAATGTTACCAATCATATTAAAC 57.420 29.630 0.00 0.00 0.00 2.01
261 262 9.579768 GTGCAATGTTACCAATCATATTAAACA 57.420 29.630 0.00 0.00 0.00 2.83
262 263 9.579768 TGCAATGTTACCAATCATATTAAACAC 57.420 29.630 0.00 0.00 0.00 3.32
263 264 9.579768 GCAATGTTACCAATCATATTAAACACA 57.420 29.630 0.00 0.00 0.00 3.72
272 273 9.248291 CCAATCATATTAAACACATTAAGGTGC 57.752 33.333 19.55 0.00 42.55 5.01
273 274 8.957028 CAATCATATTAAACACATTAAGGTGCG 58.043 33.333 19.55 0.00 42.55 5.34
274 275 6.491394 TCATATTAAACACATTAAGGTGCGC 58.509 36.000 19.55 0.00 42.55 6.09
275 276 2.884663 TAAACACATTAAGGTGCGCG 57.115 45.000 19.55 0.00 42.55 6.86
276 277 0.239879 AAACACATTAAGGTGCGCGG 59.760 50.000 19.55 0.00 42.55 6.46
277 278 0.604243 AACACATTAAGGTGCGCGGA 60.604 50.000 19.55 0.00 42.55 5.54
278 279 0.392461 ACACATTAAGGTGCGCGGAT 60.392 50.000 19.55 0.00 42.55 4.18
279 280 0.027979 CACATTAAGGTGCGCGGATG 59.972 55.000 8.83 0.76 31.10 3.51
280 281 1.095228 ACATTAAGGTGCGCGGATGG 61.095 55.000 8.83 0.00 0.00 3.51
281 282 0.813610 CATTAAGGTGCGCGGATGGA 60.814 55.000 8.83 0.00 0.00 3.41
282 283 0.532862 ATTAAGGTGCGCGGATGGAG 60.533 55.000 8.83 0.00 0.00 3.86
283 284 1.895020 TTAAGGTGCGCGGATGGAGT 61.895 55.000 8.83 0.00 0.00 3.85
284 285 2.572095 TAAGGTGCGCGGATGGAGTG 62.572 60.000 8.83 0.00 0.00 3.51
285 286 4.760047 GGTGCGCGGATGGAGTGT 62.760 66.667 8.83 0.00 0.00 3.55
286 287 3.490759 GTGCGCGGATGGAGTGTG 61.491 66.667 8.83 0.00 0.00 3.82
287 288 4.002506 TGCGCGGATGGAGTGTGT 62.003 61.111 8.83 0.00 0.00 3.72
288 289 3.490759 GCGCGGATGGAGTGTGTG 61.491 66.667 8.83 0.00 0.00 3.82
289 290 3.490759 CGCGGATGGAGTGTGTGC 61.491 66.667 0.00 0.00 0.00 4.57
290 291 2.046892 GCGGATGGAGTGTGTGCT 60.047 61.111 0.00 0.00 0.00 4.40
291 292 2.103042 GCGGATGGAGTGTGTGCTC 61.103 63.158 0.00 0.00 34.89 4.26
292 293 1.807165 CGGATGGAGTGTGTGCTCG 60.807 63.158 0.00 0.00 36.41 5.03
293 294 2.103042 GGATGGAGTGTGTGCTCGC 61.103 63.158 0.00 0.00 36.41 5.03
294 295 2.433145 ATGGAGTGTGTGCTCGCG 60.433 61.111 0.00 0.00 36.41 5.87
326 327 4.361253 GCTGGACAAGCGAGACAA 57.639 55.556 0.00 0.00 43.45 3.18
327 328 2.616969 GCTGGACAAGCGAGACAAA 58.383 52.632 0.00 0.00 43.45 2.83
328 329 0.944386 GCTGGACAAGCGAGACAAAA 59.056 50.000 0.00 0.00 43.45 2.44
329 330 1.333619 GCTGGACAAGCGAGACAAAAA 59.666 47.619 0.00 0.00 43.45 1.94
330 331 2.854805 GCTGGACAAGCGAGACAAAAAC 60.855 50.000 0.00 0.00 43.45 2.43
331 332 1.329292 TGGACAAGCGAGACAAAAACG 59.671 47.619 0.00 0.00 0.00 3.60
336 337 3.796709 CGAGACAAAAACGCACGC 58.203 55.556 0.00 0.00 0.00 5.34
337 338 1.011684 CGAGACAAAAACGCACGCA 60.012 52.632 0.00 0.00 0.00 5.24
338 339 1.253044 CGAGACAAAAACGCACGCAC 61.253 55.000 0.00 0.00 0.00 5.34
339 340 0.928451 GAGACAAAAACGCACGCACC 60.928 55.000 0.00 0.00 0.00 5.01
340 341 1.063488 GACAAAAACGCACGCACCT 59.937 52.632 0.00 0.00 0.00 4.00
341 342 1.199852 GACAAAAACGCACGCACCTG 61.200 55.000 0.00 0.00 0.00 4.00
342 343 1.226547 CAAAAACGCACGCACCTGT 60.227 52.632 0.00 0.00 0.00 4.00
343 344 1.226547 AAAAACGCACGCACCTGTG 60.227 52.632 0.00 0.00 42.81 3.66
344 345 1.928706 AAAAACGCACGCACCTGTGT 61.929 50.000 0.00 0.00 41.94 3.72
345 346 1.090625 AAAACGCACGCACCTGTGTA 61.091 50.000 0.00 0.00 41.94 2.90
346 347 0.882927 AAACGCACGCACCTGTGTAT 60.883 50.000 0.00 0.00 41.94 2.29
347 348 0.882927 AACGCACGCACCTGTGTATT 60.883 50.000 0.00 0.00 41.94 1.89
348 349 1.132436 CGCACGCACCTGTGTATTG 59.868 57.895 0.00 0.00 41.94 1.90
349 350 1.501741 GCACGCACCTGTGTATTGG 59.498 57.895 0.00 0.00 41.94 3.16
350 351 1.501741 CACGCACCTGTGTATTGGC 59.498 57.895 0.00 0.00 36.94 4.52
351 352 1.674322 ACGCACCTGTGTATTGGCC 60.674 57.895 0.00 0.00 36.94 5.36
352 353 1.673993 CGCACCTGTGTATTGGCCA 60.674 57.895 0.00 0.00 0.00 5.36
353 354 1.647545 CGCACCTGTGTATTGGCCAG 61.648 60.000 5.11 0.00 0.00 4.85
354 355 0.322456 GCACCTGTGTATTGGCCAGA 60.322 55.000 5.11 0.00 0.00 3.86
355 356 1.886222 GCACCTGTGTATTGGCCAGAA 60.886 52.381 5.11 0.00 0.00 3.02
356 357 2.513753 CACCTGTGTATTGGCCAGAAA 58.486 47.619 5.11 0.00 0.00 2.52
357 358 2.890311 CACCTGTGTATTGGCCAGAAAA 59.110 45.455 5.11 0.00 0.00 2.29
358 359 3.320541 CACCTGTGTATTGGCCAGAAAAA 59.679 43.478 5.11 0.00 0.00 1.94
359 360 4.021192 CACCTGTGTATTGGCCAGAAAAAT 60.021 41.667 5.11 0.00 0.00 1.82
360 361 5.184864 CACCTGTGTATTGGCCAGAAAAATA 59.815 40.000 5.11 0.00 0.00 1.40
361 362 5.418840 ACCTGTGTATTGGCCAGAAAAATAG 59.581 40.000 5.11 0.66 0.00 1.73
362 363 5.418840 CCTGTGTATTGGCCAGAAAAATAGT 59.581 40.000 5.11 0.00 0.00 2.12
363 364 6.266168 TGTGTATTGGCCAGAAAAATAGTG 57.734 37.500 5.11 0.00 0.00 2.74
364 365 5.772672 TGTGTATTGGCCAGAAAAATAGTGT 59.227 36.000 5.11 0.00 0.00 3.55
365 366 6.072175 TGTGTATTGGCCAGAAAAATAGTGTC 60.072 38.462 5.11 0.00 0.00 3.67
366 367 4.701956 ATTGGCCAGAAAAATAGTGTCG 57.298 40.909 5.11 0.00 0.00 4.35
367 368 3.134574 TGGCCAGAAAAATAGTGTCGT 57.865 42.857 0.00 0.00 0.00 4.34
368 369 3.482436 TGGCCAGAAAAATAGTGTCGTT 58.518 40.909 0.00 0.00 0.00 3.85
369 370 3.500680 TGGCCAGAAAAATAGTGTCGTTC 59.499 43.478 0.00 0.00 0.00 3.95
370 371 3.119955 GGCCAGAAAAATAGTGTCGTTCC 60.120 47.826 0.00 0.00 0.00 3.62
371 372 3.119955 GCCAGAAAAATAGTGTCGTTCCC 60.120 47.826 0.00 0.00 0.00 3.97
372 373 4.069304 CCAGAAAAATAGTGTCGTTCCCA 58.931 43.478 0.00 0.00 0.00 4.37
373 374 4.517453 CCAGAAAAATAGTGTCGTTCCCAA 59.483 41.667 0.00 0.00 0.00 4.12
374 375 5.334879 CCAGAAAAATAGTGTCGTTCCCAAG 60.335 44.000 0.00 0.00 0.00 3.61
375 376 5.238650 CAGAAAAATAGTGTCGTTCCCAAGT 59.761 40.000 0.00 0.00 0.00 3.16
376 377 5.469084 AGAAAAATAGTGTCGTTCCCAAGTC 59.531 40.000 0.00 0.00 0.00 3.01
377 378 4.618920 AAATAGTGTCGTTCCCAAGTCT 57.381 40.909 0.00 0.00 0.00 3.24
378 379 4.618920 AATAGTGTCGTTCCCAAGTCTT 57.381 40.909 0.00 0.00 0.00 3.01
379 380 2.528041 AGTGTCGTTCCCAAGTCTTC 57.472 50.000 0.00 0.00 0.00 2.87
380 381 1.070289 AGTGTCGTTCCCAAGTCTTCC 59.930 52.381 0.00 0.00 0.00 3.46
381 382 1.070289 GTGTCGTTCCCAAGTCTTCCT 59.930 52.381 0.00 0.00 0.00 3.36
382 383 1.766496 TGTCGTTCCCAAGTCTTCCTT 59.234 47.619 0.00 0.00 0.00 3.36
383 384 2.224209 TGTCGTTCCCAAGTCTTCCTTC 60.224 50.000 0.00 0.00 0.00 3.46
384 385 1.346722 TCGTTCCCAAGTCTTCCTTCC 59.653 52.381 0.00 0.00 0.00 3.46
385 386 1.610886 CGTTCCCAAGTCTTCCTTCCC 60.611 57.143 0.00 0.00 0.00 3.97
386 387 1.073098 TTCCCAAGTCTTCCTTCCCC 58.927 55.000 0.00 0.00 0.00 4.81
387 388 0.104144 TCCCAAGTCTTCCTTCCCCA 60.104 55.000 0.00 0.00 0.00 4.96
388 389 0.329596 CCCAAGTCTTCCTTCCCCAG 59.670 60.000 0.00 0.00 0.00 4.45
389 390 1.362224 CCAAGTCTTCCTTCCCCAGA 58.638 55.000 0.00 0.00 0.00 3.86
390 391 1.918957 CCAAGTCTTCCTTCCCCAGAT 59.081 52.381 0.00 0.00 0.00 2.90
391 392 2.356535 CCAAGTCTTCCTTCCCCAGATG 60.357 54.545 0.00 0.00 0.00 2.90
392 393 0.915364 AGTCTTCCTTCCCCAGATGC 59.085 55.000 0.00 0.00 0.00 3.91
393 394 0.620556 GTCTTCCTTCCCCAGATGCA 59.379 55.000 0.00 0.00 0.00 3.96
394 395 0.914644 TCTTCCTTCCCCAGATGCAG 59.085 55.000 0.00 0.00 0.00 4.41
395 396 0.750911 CTTCCTTCCCCAGATGCAGC 60.751 60.000 0.00 0.00 0.00 5.25
396 397 2.123982 CCTTCCCCAGATGCAGCC 60.124 66.667 0.00 0.00 0.00 4.85
397 398 2.515523 CTTCCCCAGATGCAGCCG 60.516 66.667 0.00 0.00 0.00 5.52
398 399 4.802051 TTCCCCAGATGCAGCCGC 62.802 66.667 0.00 0.00 39.24 6.53
403 404 4.827087 CAGATGCAGCCGCCGTCT 62.827 66.667 0.00 0.00 37.32 4.18
404 405 4.087892 AGATGCAGCCGCCGTCTT 62.088 61.111 0.00 0.00 37.32 3.01
405 406 3.567797 GATGCAGCCGCCGTCTTC 61.568 66.667 0.00 0.00 37.32 2.87
406 407 4.087892 ATGCAGCCGCCGTCTTCT 62.088 61.111 0.00 0.00 37.32 2.85
407 408 4.742201 TGCAGCCGCCGTCTTCTC 62.742 66.667 0.00 0.00 37.32 2.87
409 410 3.764466 CAGCCGCCGTCTTCTCCT 61.764 66.667 0.00 0.00 0.00 3.69
410 411 3.453679 AGCCGCCGTCTTCTCCTC 61.454 66.667 0.00 0.00 0.00 3.71
411 412 3.453679 GCCGCCGTCTTCTCCTCT 61.454 66.667 0.00 0.00 0.00 3.69
412 413 3.007973 GCCGCCGTCTTCTCCTCTT 62.008 63.158 0.00 0.00 0.00 2.85
413 414 1.592223 CCGCCGTCTTCTCCTCTTT 59.408 57.895 0.00 0.00 0.00 2.52
414 415 0.458716 CCGCCGTCTTCTCCTCTTTC 60.459 60.000 0.00 0.00 0.00 2.62
415 416 0.458716 CGCCGTCTTCTCCTCTTTCC 60.459 60.000 0.00 0.00 0.00 3.13
416 417 0.108089 GCCGTCTTCTCCTCTTTCCC 60.108 60.000 0.00 0.00 0.00 3.97
417 418 1.267121 CCGTCTTCTCCTCTTTCCCA 58.733 55.000 0.00 0.00 0.00 4.37
418 419 1.066787 CCGTCTTCTCCTCTTTCCCAC 60.067 57.143 0.00 0.00 0.00 4.61
419 420 1.402984 CGTCTTCTCCTCTTTCCCACG 60.403 57.143 0.00 0.00 0.00 4.94
420 421 0.608640 TCTTCTCCTCTTTCCCACGC 59.391 55.000 0.00 0.00 0.00 5.34
421 422 0.321671 CTTCTCCTCTTTCCCACGCA 59.678 55.000 0.00 0.00 0.00 5.24
422 423 0.762418 TTCTCCTCTTTCCCACGCAA 59.238 50.000 0.00 0.00 0.00 4.85
423 424 0.762418 TCTCCTCTTTCCCACGCAAA 59.238 50.000 0.00 0.00 0.00 3.68
424 425 0.875059 CTCCTCTTTCCCACGCAAAC 59.125 55.000 0.00 0.00 0.00 2.93
425 426 0.472471 TCCTCTTTCCCACGCAAACT 59.528 50.000 0.00 0.00 0.00 2.66
426 427 0.875059 CCTCTTTCCCACGCAAACTC 59.125 55.000 0.00 0.00 0.00 3.01
427 428 1.543429 CCTCTTTCCCACGCAAACTCT 60.543 52.381 0.00 0.00 0.00 3.24
428 429 1.801178 CTCTTTCCCACGCAAACTCTC 59.199 52.381 0.00 0.00 0.00 3.20
429 430 1.416401 TCTTTCCCACGCAAACTCTCT 59.584 47.619 0.00 0.00 0.00 3.10
430 431 2.158813 TCTTTCCCACGCAAACTCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
431 432 1.878953 TTCCCACGCAAACTCTCTTC 58.121 50.000 0.00 0.00 0.00 2.87
432 433 1.048601 TCCCACGCAAACTCTCTTCT 58.951 50.000 0.00 0.00 0.00 2.85
433 434 2.244695 TCCCACGCAAACTCTCTTCTA 58.755 47.619 0.00 0.00 0.00 2.10
434 435 2.832129 TCCCACGCAAACTCTCTTCTAT 59.168 45.455 0.00 0.00 0.00 1.98
435 436 3.119101 TCCCACGCAAACTCTCTTCTATC 60.119 47.826 0.00 0.00 0.00 2.08
436 437 3.190874 CCACGCAAACTCTCTTCTATCC 58.809 50.000 0.00 0.00 0.00 2.59
437 438 3.368427 CCACGCAAACTCTCTTCTATCCA 60.368 47.826 0.00 0.00 0.00 3.41
438 439 4.437239 CACGCAAACTCTCTTCTATCCAT 58.563 43.478 0.00 0.00 0.00 3.41
439 440 4.269603 CACGCAAACTCTCTTCTATCCATG 59.730 45.833 0.00 0.00 0.00 3.66
440 441 4.160439 ACGCAAACTCTCTTCTATCCATGA 59.840 41.667 0.00 0.00 0.00 3.07
441 442 4.505922 CGCAAACTCTCTTCTATCCATGAC 59.494 45.833 0.00 0.00 0.00 3.06
442 443 4.813697 GCAAACTCTCTTCTATCCATGACC 59.186 45.833 0.00 0.00 0.00 4.02
443 444 4.927978 AACTCTCTTCTATCCATGACCG 57.072 45.455 0.00 0.00 0.00 4.79
444 445 3.226777 ACTCTCTTCTATCCATGACCGG 58.773 50.000 0.00 0.00 0.00 5.28
445 446 1.964223 TCTCTTCTATCCATGACCGGC 59.036 52.381 0.00 0.00 0.00 6.13
446 447 1.001406 CTCTTCTATCCATGACCGGCC 59.999 57.143 0.00 0.00 0.00 6.13
447 448 0.319900 CTTCTATCCATGACCGGCCG 60.320 60.000 21.04 21.04 0.00 6.13
448 449 1.754380 TTCTATCCATGACCGGCCGG 61.754 60.000 42.17 42.17 42.03 6.13
449 450 3.238497 TATCCATGACCGGCCGGG 61.238 66.667 44.99 28.31 43.62 5.73
462 463 2.766651 CCGGGCCAGCTAGGGTTA 60.767 66.667 4.39 0.00 38.09 2.85
463 464 2.504519 CGGGCCAGCTAGGGTTAC 59.495 66.667 4.39 0.00 38.09 2.50
464 465 2.916661 GGGCCAGCTAGGGTTACC 59.083 66.667 4.39 0.00 38.09 2.85
465 466 1.999002 GGGCCAGCTAGGGTTACCA 60.999 63.158 4.39 0.00 40.13 3.25
466 467 1.223763 GGCCAGCTAGGGTTACCAC 59.776 63.158 2.98 0.00 40.13 4.16
467 468 1.223763 GCCAGCTAGGGTTACCACC 59.776 63.158 2.98 0.00 43.37 4.61
475 476 2.984623 GGTTACCACCCGTCTCCC 59.015 66.667 0.00 0.00 37.03 4.30
476 477 2.663075 GGTTACCACCCGTCTCCCC 61.663 68.421 0.00 0.00 37.03 4.81
477 478 2.284847 TTACCACCCGTCTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
478 479 2.872250 TTACCACCCGTCTCCCCCT 61.872 63.158 0.00 0.00 0.00 4.79
479 480 1.517538 TTACCACCCGTCTCCCCCTA 61.518 60.000 0.00 0.00 0.00 3.53
480 481 1.298906 TACCACCCGTCTCCCCCTAT 61.299 60.000 0.00 0.00 0.00 2.57
481 482 1.837499 CCACCCGTCTCCCCCTATC 60.837 68.421 0.00 0.00 0.00 2.08
482 483 1.233369 CACCCGTCTCCCCCTATCT 59.767 63.158 0.00 0.00 0.00 1.98
483 484 0.481567 CACCCGTCTCCCCCTATCTA 59.518 60.000 0.00 0.00 0.00 1.98
484 485 1.077334 CACCCGTCTCCCCCTATCTAT 59.923 57.143 0.00 0.00 0.00 1.98
485 486 1.077334 ACCCGTCTCCCCCTATCTATG 59.923 57.143 0.00 0.00 0.00 2.23
486 487 1.358103 CCCGTCTCCCCCTATCTATGA 59.642 57.143 0.00 0.00 0.00 2.15
487 488 2.448453 CCGTCTCCCCCTATCTATGAC 58.552 57.143 0.00 0.00 0.00 3.06
488 489 2.448453 CGTCTCCCCCTATCTATGACC 58.552 57.143 0.00 0.00 0.00 4.02
489 490 2.448453 GTCTCCCCCTATCTATGACCG 58.552 57.143 0.00 0.00 0.00 4.79
490 491 1.358103 TCTCCCCCTATCTATGACCGG 59.642 57.143 0.00 0.00 0.00 5.28
491 492 1.358103 CTCCCCCTATCTATGACCGGA 59.642 57.143 9.46 0.00 0.00 5.14
492 493 2.008400 TCCCCCTATCTATGACCGGAT 58.992 52.381 9.46 0.00 0.00 4.18
493 494 2.024273 TCCCCCTATCTATGACCGGATC 60.024 54.545 9.46 2.18 0.00 3.36
494 495 2.389715 CCCCTATCTATGACCGGATCC 58.610 57.143 9.46 0.00 0.00 3.36
495 496 2.025155 CCCTATCTATGACCGGATCCG 58.975 57.143 27.65 27.65 39.44 4.18
496 497 1.405821 CCTATCTATGACCGGATCCGC 59.594 57.143 29.12 16.47 38.24 5.54
497 498 1.064208 CTATCTATGACCGGATCCGCG 59.936 57.143 29.12 22.63 38.24 6.46
498 499 1.595993 ATCTATGACCGGATCCGCGG 61.596 60.000 29.12 22.12 38.24 6.46
499 500 2.203379 TATGACCGGATCCGCGGA 60.203 61.111 33.12 33.12 38.24 5.54
500 501 2.201436 CTATGACCGGATCCGCGGAG 62.201 65.000 33.87 21.74 38.24 4.63
522 523 2.803203 GCCATCACATGCCATCTGT 58.197 52.632 0.00 0.00 0.00 3.41
523 524 1.108776 GCCATCACATGCCATCTGTT 58.891 50.000 0.00 0.00 0.00 3.16
524 525 1.202371 GCCATCACATGCCATCTGTTG 60.202 52.381 0.00 0.00 0.00 3.33
525 526 2.371306 CCATCACATGCCATCTGTTGA 58.629 47.619 0.00 0.00 0.00 3.18
526 527 2.098607 CCATCACATGCCATCTGTTGAC 59.901 50.000 0.00 0.00 0.00 3.18
527 528 1.441738 TCACATGCCATCTGTTGACG 58.558 50.000 0.00 0.00 0.00 4.35
528 529 0.448990 CACATGCCATCTGTTGACGG 59.551 55.000 0.00 0.00 0.00 4.79
529 530 0.677731 ACATGCCATCTGTTGACGGG 60.678 55.000 0.00 0.00 0.00 5.28
530 531 1.750399 ATGCCATCTGTTGACGGGC 60.750 57.895 0.00 0.00 42.79 6.13
531 532 3.499737 GCCATCTGTTGACGGGCG 61.500 66.667 0.00 0.00 36.64 6.13
532 533 2.264480 CCATCTGTTGACGGGCGA 59.736 61.111 0.00 0.00 0.00 5.54
533 534 1.811266 CCATCTGTTGACGGGCGAG 60.811 63.158 0.00 0.00 0.00 5.03
534 535 1.811266 CATCTGTTGACGGGCGAGG 60.811 63.158 0.00 0.00 0.00 4.63
535 536 1.982395 ATCTGTTGACGGGCGAGGA 60.982 57.895 0.00 0.00 0.00 3.71
536 537 1.541310 ATCTGTTGACGGGCGAGGAA 61.541 55.000 0.00 0.00 0.00 3.36
537 538 1.738099 CTGTTGACGGGCGAGGAAG 60.738 63.158 0.00 0.00 0.00 3.46
538 539 2.434359 GTTGACGGGCGAGGAAGG 60.434 66.667 0.00 0.00 0.00 3.46
539 540 4.388499 TTGACGGGCGAGGAAGGC 62.388 66.667 0.00 0.00 0.00 4.35
541 542 4.516195 GACGGGCGAGGAAGGCTC 62.516 72.222 0.00 0.00 36.85 4.70
543 544 3.854669 CGGGCGAGGAAGGCTCAT 61.855 66.667 0.00 0.00 36.85 2.90
544 545 2.110006 GGGCGAGGAAGGCTCATC 59.890 66.667 0.00 0.00 36.85 2.92
548 549 4.434685 GAGGAAGGCTCATCGCAG 57.565 61.111 0.00 0.00 41.67 5.18
549 550 1.886777 GAGGAAGGCTCATCGCAGC 60.887 63.158 0.00 0.00 41.67 5.25
550 551 2.124983 GGAAGGCTCATCGCAGCA 60.125 61.111 0.00 0.00 41.65 4.41
551 552 1.746615 GGAAGGCTCATCGCAGCAA 60.747 57.895 0.00 0.00 41.65 3.91
552 553 1.427020 GAAGGCTCATCGCAGCAAC 59.573 57.895 0.00 0.00 41.65 4.17
553 554 2.301902 GAAGGCTCATCGCAGCAACG 62.302 60.000 0.00 0.00 41.65 4.10
555 556 2.397252 GCTCATCGCAGCAACGAC 59.603 61.111 3.03 0.00 46.28 4.34
556 557 2.382746 GCTCATCGCAGCAACGACA 61.383 57.895 3.03 0.00 46.28 4.35
557 558 1.900585 GCTCATCGCAGCAACGACAA 61.901 55.000 3.03 0.00 46.28 3.18
558 559 0.179240 CTCATCGCAGCAACGACAAC 60.179 55.000 3.03 0.00 46.28 3.32
559 560 1.507713 CATCGCAGCAACGACAACG 60.508 57.895 3.03 0.00 46.28 4.10
560 561 2.667318 ATCGCAGCAACGACAACGG 61.667 57.895 3.03 0.00 46.28 4.44
561 562 3.334751 CGCAGCAACGACAACGGA 61.335 61.111 0.00 0.00 44.46 4.69
562 563 2.551270 GCAGCAACGACAACGGAG 59.449 61.111 0.00 0.00 44.46 4.63
563 564 1.954146 GCAGCAACGACAACGGAGA 60.954 57.895 0.00 0.00 44.46 3.71
564 565 1.891060 GCAGCAACGACAACGGAGAG 61.891 60.000 0.00 0.00 44.46 3.20
565 566 0.597637 CAGCAACGACAACGGAGAGT 60.598 55.000 0.00 0.00 44.46 3.24
566 567 0.104304 AGCAACGACAACGGAGAGTT 59.896 50.000 0.00 0.00 45.45 3.01
573 574 3.936203 AACGGAGAGTTGCGGCCA 61.936 61.111 2.24 0.00 43.03 5.36
574 575 3.254024 AACGGAGAGTTGCGGCCAT 62.254 57.895 2.24 0.00 43.03 4.40
575 576 2.892425 CGGAGAGTTGCGGCCATC 60.892 66.667 2.24 0.00 34.17 3.51
576 577 2.514824 GGAGAGTTGCGGCCATCC 60.515 66.667 2.24 0.00 0.00 3.51
577 578 2.586792 GAGAGTTGCGGCCATCCT 59.413 61.111 2.24 0.00 0.00 3.24
578 579 1.522580 GAGAGTTGCGGCCATCCTC 60.523 63.158 2.24 1.77 0.00 3.71
579 580 1.965754 GAGAGTTGCGGCCATCCTCT 61.966 60.000 2.24 7.27 34.32 3.69
580 581 1.817099 GAGTTGCGGCCATCCTCTG 60.817 63.158 2.24 0.00 0.00 3.35
588 589 4.528674 CCATCCTCTGGCGACAAG 57.471 61.111 0.00 0.00 42.06 3.16
589 590 1.599047 CCATCCTCTGGCGACAAGT 59.401 57.895 0.00 0.00 42.06 3.16
590 591 0.742281 CCATCCTCTGGCGACAAGTG 60.742 60.000 0.00 0.00 42.06 3.16
591 592 0.742281 CATCCTCTGGCGACAAGTGG 60.742 60.000 0.00 0.00 42.06 4.00
592 593 0.904865 ATCCTCTGGCGACAAGTGGA 60.905 55.000 12.03 12.03 42.06 4.02
593 594 1.374758 CCTCTGGCGACAAGTGGAC 60.375 63.158 0.00 0.00 42.06 4.02
594 595 1.668294 CTCTGGCGACAAGTGGACT 59.332 57.895 0.00 0.00 42.06 3.85
595 596 0.668706 CTCTGGCGACAAGTGGACTG 60.669 60.000 0.00 0.00 42.06 3.51
694 695 2.035783 GGGGGTGGTCTTCAAGCC 59.964 66.667 0.00 0.00 0.00 4.35
770 772 6.942532 TTGCTCCTATTATGTGTGGATTTC 57.057 37.500 0.00 0.00 0.00 2.17
797 799 2.130821 TACTTGCCCGTTGGATGCCA 62.131 55.000 0.00 0.00 0.00 4.92
912 914 3.566351 AGTTTCCTGAACTTTTCCCTGG 58.434 45.455 0.00 0.00 46.34 4.45
944 946 5.592688 CCTGAACTTTTCCCTGAAAGTGTTA 59.407 40.000 4.01 0.00 46.23 2.41
1091 1093 6.327365 TCCCTAACTTCATGATGATGCTTCTA 59.673 38.462 15.03 0.00 0.00 2.10
1178 1180 1.451936 GTTGGTGTGCCTCCTGTCT 59.548 57.895 0.00 0.00 35.27 3.41
1278 1286 2.438434 CATCCGTGGCACCTTCCC 60.438 66.667 12.86 0.00 0.00 3.97
1298 1306 2.285592 TCCTGCTCCAGATGGGCA 60.286 61.111 12.51 12.51 38.46 5.36
1339 1347 0.253044 ATGTCCCCATCGTCAAGGTG 59.747 55.000 0.00 0.00 0.00 4.00
1422 1438 7.429374 TTGTGAGATCTGATCCTATCTGTTT 57.571 36.000 13.83 0.00 32.60 2.83
1495 1515 3.735591 CCGAGGTCTGGTAACTTTGAAA 58.264 45.455 0.00 0.00 37.61 2.69
1533 1553 2.814097 GCTGCCCAGTTACAGGAGAAAA 60.814 50.000 0.00 0.00 34.38 2.29
1730 1752 3.142174 CAGGGAGACAGGTGAGAAAAAC 58.858 50.000 0.00 0.00 0.00 2.43
1831 1856 7.668886 CCTATTGATTTTCTTGGGCATATCTCT 59.331 37.037 0.00 0.00 0.00 3.10
1838 1863 9.597681 ATTTTCTTGGGCATATCTCTTTATCAT 57.402 29.630 0.00 0.00 0.00 2.45
2004 2038 6.291648 TCTTGCATTCTTCTGTCATAGAGT 57.708 37.500 0.00 0.00 36.61 3.24
2009 2043 6.369890 TGCATTCTTCTGTCATAGAGTTGTTC 59.630 38.462 0.00 0.00 36.61 3.18
2192 2261 6.854496 TTTTTCTAGCACGTTGTCTAATGT 57.146 33.333 0.00 0.00 36.48 2.71
2246 2315 8.976986 GTGATTTTCTTTTGAAGCATCACTAT 57.023 30.769 17.02 0.00 45.57 2.12
2388 2460 6.472887 ACACTTTCCTAAATTTCTCCATCGA 58.527 36.000 0.00 0.00 0.00 3.59
2389 2461 6.940298 ACACTTTCCTAAATTTCTCCATCGAA 59.060 34.615 0.00 0.00 0.00 3.71
2425 2498 8.655092 CATTTCTATTGATTCGGCTCTCTATTC 58.345 37.037 0.00 0.00 0.00 1.75
2485 2563 1.344114 TGAGCAAAATTTCACAGGCCC 59.656 47.619 0.00 0.00 0.00 5.80
2487 2565 1.620323 AGCAAAATTTCACAGGCCCTC 59.380 47.619 0.00 0.00 0.00 4.30
2518 2596 9.076781 TCATGTCAATCAAACTTTAATTGAGGA 57.923 29.630 0.87 0.00 39.40 3.71
2575 2654 1.290955 CCGGCGAGTAGACAAACCA 59.709 57.895 9.30 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.463879 CAGGAGAGCTGGCCGGTG 62.464 72.222 14.55 0.00 0.00 4.94
28 29 4.869440 CTCGCGCAGGAGAGCTGG 62.869 72.222 8.75 0.00 38.53 4.85
52 53 3.123620 CTCCTGTGCAAGCTCGGC 61.124 66.667 3.50 3.50 0.00 5.54
53 54 2.435586 CCTCCTGTGCAAGCTCGG 60.436 66.667 0.00 0.00 0.00 4.63
54 55 3.123620 GCCTCCTGTGCAAGCTCG 61.124 66.667 0.00 0.00 0.00 5.03
55 56 2.749441 GGCCTCCTGTGCAAGCTC 60.749 66.667 0.00 0.00 0.00 4.09
56 57 3.255397 AGGCCTCCTGTGCAAGCT 61.255 61.111 0.00 0.00 29.57 3.74
57 58 2.749441 GAGGCCTCCTGTGCAAGC 60.749 66.667 23.19 0.00 31.76 4.01
58 59 2.435586 CGAGGCCTCCTGTGCAAG 60.436 66.667 27.20 6.40 31.76 4.01
59 60 4.704833 GCGAGGCCTCCTGTGCAA 62.705 66.667 27.20 0.00 33.45 4.08
81 82 3.376935 ATCAGCTTGACCGAGGGCG 62.377 63.158 0.00 0.00 37.24 6.13
82 83 1.817099 CATCAGCTTGACCGAGGGC 60.817 63.158 0.00 0.00 0.00 5.19
83 84 0.467384 ATCATCAGCTTGACCGAGGG 59.533 55.000 0.00 0.00 0.00 4.30
84 85 1.938577 CAATCATCAGCTTGACCGAGG 59.061 52.381 0.00 0.00 0.00 4.63
85 86 1.329906 GCAATCATCAGCTTGACCGAG 59.670 52.381 0.00 0.00 0.00 4.63
86 87 1.338960 TGCAATCATCAGCTTGACCGA 60.339 47.619 0.00 0.00 0.00 4.69
87 88 1.089112 TGCAATCATCAGCTTGACCG 58.911 50.000 0.00 0.00 0.00 4.79
88 89 1.133790 GGTGCAATCATCAGCTTGACC 59.866 52.381 0.00 0.00 0.00 4.02
89 90 1.133790 GGGTGCAATCATCAGCTTGAC 59.866 52.381 0.00 0.00 32.94 3.18
90 91 1.005097 AGGGTGCAATCATCAGCTTGA 59.995 47.619 0.00 0.00 32.94 3.02
91 92 1.404391 GAGGGTGCAATCATCAGCTTG 59.596 52.381 0.00 0.00 32.94 4.01
92 93 1.684248 GGAGGGTGCAATCATCAGCTT 60.684 52.381 0.00 0.00 32.94 3.74
93 94 0.106819 GGAGGGTGCAATCATCAGCT 60.107 55.000 0.00 0.00 32.94 4.24
94 95 0.394762 TGGAGGGTGCAATCATCAGC 60.395 55.000 0.00 0.00 0.00 4.26
95 96 2.359981 ATGGAGGGTGCAATCATCAG 57.640 50.000 0.00 0.00 0.00 2.90
96 97 2.832643 AATGGAGGGTGCAATCATCA 57.167 45.000 0.00 0.00 0.00 3.07
97 98 3.181472 GGAAAATGGAGGGTGCAATCATC 60.181 47.826 0.00 0.00 0.00 2.92
98 99 2.767960 GGAAAATGGAGGGTGCAATCAT 59.232 45.455 0.00 0.00 0.00 2.45
99 100 2.178580 GGAAAATGGAGGGTGCAATCA 58.821 47.619 0.00 0.00 0.00 2.57
100 101 2.178580 TGGAAAATGGAGGGTGCAATC 58.821 47.619 0.00 0.00 0.00 2.67
101 102 2.323999 TGGAAAATGGAGGGTGCAAT 57.676 45.000 0.00 0.00 0.00 3.56
102 103 2.094100 TTGGAAAATGGAGGGTGCAA 57.906 45.000 0.00 0.00 0.00 4.08
103 104 1.691434 GTTTGGAAAATGGAGGGTGCA 59.309 47.619 0.00 0.00 0.00 4.57
104 105 1.970640 AGTTTGGAAAATGGAGGGTGC 59.029 47.619 0.00 0.00 0.00 5.01
105 106 2.289010 GCAGTTTGGAAAATGGAGGGTG 60.289 50.000 2.12 0.00 34.79 4.61
106 107 1.970640 GCAGTTTGGAAAATGGAGGGT 59.029 47.619 2.12 0.00 34.79 4.34
107 108 1.969923 TGCAGTTTGGAAAATGGAGGG 59.030 47.619 2.12 0.00 34.79 4.30
108 109 3.308438 CTGCAGTTTGGAAAATGGAGG 57.692 47.619 5.25 0.00 44.86 4.30
110 111 2.318908 AGCTGCAGTTTGGAAAATGGA 58.681 42.857 16.64 0.00 34.79 3.41
111 112 2.825861 AGCTGCAGTTTGGAAAATGG 57.174 45.000 16.64 0.00 34.79 3.16
112 113 3.986277 AGAAGCTGCAGTTTGGAAAATG 58.014 40.909 21.32 0.00 37.08 2.32
113 114 4.021981 GGTAGAAGCTGCAGTTTGGAAAAT 60.022 41.667 21.32 0.00 0.00 1.82
114 115 3.317993 GGTAGAAGCTGCAGTTTGGAAAA 59.682 43.478 21.32 0.00 0.00 2.29
115 116 2.884639 GGTAGAAGCTGCAGTTTGGAAA 59.115 45.455 21.32 0.17 0.00 3.13
116 117 2.106511 AGGTAGAAGCTGCAGTTTGGAA 59.893 45.455 21.32 2.73 0.00 3.53
117 118 1.699634 AGGTAGAAGCTGCAGTTTGGA 59.300 47.619 21.32 5.10 0.00 3.53
118 119 2.191128 AGGTAGAAGCTGCAGTTTGG 57.809 50.000 21.32 0.00 0.00 3.28
119 120 2.485814 GGAAGGTAGAAGCTGCAGTTTG 59.514 50.000 21.32 0.00 0.00 2.93
120 121 2.106511 TGGAAGGTAGAAGCTGCAGTTT 59.893 45.455 16.33 16.33 0.00 2.66
121 122 1.699634 TGGAAGGTAGAAGCTGCAGTT 59.300 47.619 16.64 6.37 0.00 3.16
122 123 1.277557 CTGGAAGGTAGAAGCTGCAGT 59.722 52.381 16.64 0.00 0.00 4.40
123 124 2.011046 GCTGGAAGGTAGAAGCTGCAG 61.011 57.143 10.11 10.11 32.82 4.41
124 125 0.036010 GCTGGAAGGTAGAAGCTGCA 60.036 55.000 1.02 0.00 32.82 4.41
125 126 0.746204 GGCTGGAAGGTAGAAGCTGC 60.746 60.000 0.00 0.00 35.93 5.25
126 127 0.615331 TGGCTGGAAGGTAGAAGCTG 59.385 55.000 0.00 0.00 35.93 4.24
127 128 0.908198 CTGGCTGGAAGGTAGAAGCT 59.092 55.000 0.00 0.00 35.93 3.74
128 129 0.615850 ACTGGCTGGAAGGTAGAAGC 59.384 55.000 0.00 0.00 34.86 3.86
129 130 6.426646 AATATACTGGCTGGAAGGTAGAAG 57.573 41.667 0.00 0.00 0.00 2.85
130 131 6.824958 AAATATACTGGCTGGAAGGTAGAA 57.175 37.500 0.00 0.00 0.00 2.10
131 132 9.256228 CTATAAATATACTGGCTGGAAGGTAGA 57.744 37.037 0.00 0.00 0.00 2.59
132 133 7.982354 GCTATAAATATACTGGCTGGAAGGTAG 59.018 40.741 0.00 0.00 0.00 3.18
133 134 7.363530 CGCTATAAATATACTGGCTGGAAGGTA 60.364 40.741 0.00 0.00 0.00 3.08
134 135 6.574465 CGCTATAAATATACTGGCTGGAAGGT 60.574 42.308 0.00 0.00 0.00 3.50
135 136 5.812642 CGCTATAAATATACTGGCTGGAAGG 59.187 44.000 0.00 0.00 0.00 3.46
136 137 5.292101 GCGCTATAAATATACTGGCTGGAAG 59.708 44.000 0.00 0.00 0.00 3.46
137 138 5.175859 GCGCTATAAATATACTGGCTGGAA 58.824 41.667 0.00 0.00 0.00 3.53
138 139 4.221924 TGCGCTATAAATATACTGGCTGGA 59.778 41.667 9.73 0.00 0.00 3.86
139 140 4.503910 TGCGCTATAAATATACTGGCTGG 58.496 43.478 9.73 0.00 0.00 4.85
140 141 6.668541 AATGCGCTATAAATATACTGGCTG 57.331 37.500 9.73 0.00 0.00 4.85
141 142 7.011482 GCTAAATGCGCTATAAATATACTGGCT 59.989 37.037 9.73 0.00 0.00 4.75
142 143 7.126398 GCTAAATGCGCTATAAATATACTGGC 58.874 38.462 9.73 0.00 0.00 4.85
143 144 8.196802 TGCTAAATGCGCTATAAATATACTGG 57.803 34.615 9.73 0.00 46.63 4.00
163 164 7.147983 TTTCCTTAAAGAAACAGCAAGTGCTAA 60.148 33.333 5.29 0.00 38.91 3.09
164 165 6.320164 TTTCCTTAAAGAAACAGCAAGTGCTA 59.680 34.615 5.29 0.00 38.91 3.49
165 166 5.127031 TTTCCTTAAAGAAACAGCAAGTGCT 59.873 36.000 0.00 0.00 40.35 4.40
166 167 4.568152 TCCTTAAAGAAACAGCAAGTGC 57.432 40.909 0.00 0.00 42.49 4.40
167 168 6.564328 ACTTTCCTTAAAGAAACAGCAAGTG 58.436 36.000 4.95 0.00 44.14 3.16
168 169 6.775594 ACTTTCCTTAAAGAAACAGCAAGT 57.224 33.333 4.95 0.00 44.14 3.16
169 170 6.858478 GCTACTTTCCTTAAAGAAACAGCAAG 59.142 38.462 16.51 2.99 44.14 4.01
170 171 6.512741 CGCTACTTTCCTTAAAGAAACAGCAA 60.513 38.462 19.10 0.00 44.14 3.91
171 172 5.049680 CGCTACTTTCCTTAAAGAAACAGCA 60.050 40.000 19.10 0.00 44.14 4.41
172 173 5.383130 CGCTACTTTCCTTAAAGAAACAGC 58.617 41.667 13.63 13.63 44.14 4.40
173 174 5.383130 GCGCTACTTTCCTTAAAGAAACAG 58.617 41.667 0.00 0.00 44.14 3.16
174 175 4.214758 GGCGCTACTTTCCTTAAAGAAACA 59.785 41.667 7.64 0.00 44.14 2.83
175 176 4.454847 AGGCGCTACTTTCCTTAAAGAAAC 59.545 41.667 7.64 0.00 44.14 2.78
176 177 4.454504 CAGGCGCTACTTTCCTTAAAGAAA 59.545 41.667 7.64 0.00 44.14 2.52
177 178 4.000988 CAGGCGCTACTTTCCTTAAAGAA 58.999 43.478 7.64 0.00 44.14 2.52
178 179 3.596214 CAGGCGCTACTTTCCTTAAAGA 58.404 45.455 7.64 0.00 44.14 2.52
179 180 2.678336 CCAGGCGCTACTTTCCTTAAAG 59.322 50.000 7.64 0.00 46.34 1.85
180 181 2.039348 ACCAGGCGCTACTTTCCTTAAA 59.961 45.455 7.64 0.00 0.00 1.52
181 182 1.626825 ACCAGGCGCTACTTTCCTTAA 59.373 47.619 7.64 0.00 0.00 1.85
182 183 1.272807 ACCAGGCGCTACTTTCCTTA 58.727 50.000 7.64 0.00 0.00 2.69
183 184 0.400594 AACCAGGCGCTACTTTCCTT 59.599 50.000 7.64 0.00 0.00 3.36
184 185 0.400594 AAACCAGGCGCTACTTTCCT 59.599 50.000 7.64 0.00 0.00 3.36
185 186 1.199327 GAAAACCAGGCGCTACTTTCC 59.801 52.381 7.64 0.00 0.00 3.13
186 187 1.877443 TGAAAACCAGGCGCTACTTTC 59.123 47.619 7.64 10.20 0.00 2.62
187 188 1.975660 TGAAAACCAGGCGCTACTTT 58.024 45.000 7.64 0.03 0.00 2.66
188 189 1.880027 CTTGAAAACCAGGCGCTACTT 59.120 47.619 7.64 0.00 0.00 2.24
189 190 1.523758 CTTGAAAACCAGGCGCTACT 58.476 50.000 7.64 0.00 0.00 2.57
190 191 0.521735 CCTTGAAAACCAGGCGCTAC 59.478 55.000 7.64 0.00 0.00 3.58
191 192 1.241315 GCCTTGAAAACCAGGCGCTA 61.241 55.000 7.64 0.00 37.71 4.26
192 193 2.564721 GCCTTGAAAACCAGGCGCT 61.565 57.895 7.64 0.00 37.71 5.92
193 194 2.049156 GCCTTGAAAACCAGGCGC 60.049 61.111 0.00 0.00 37.71 6.53
195 196 0.597377 CGTTGCCTTGAAAACCAGGC 60.597 55.000 3.08 3.08 46.82 4.85
196 197 0.744281 ACGTTGCCTTGAAAACCAGG 59.256 50.000 0.00 0.00 0.00 4.45
197 198 3.368495 GTTACGTTGCCTTGAAAACCAG 58.632 45.455 0.00 0.00 0.00 4.00
198 199 2.099427 GGTTACGTTGCCTTGAAAACCA 59.901 45.455 0.00 0.00 35.93 3.67
199 200 2.099427 TGGTTACGTTGCCTTGAAAACC 59.901 45.455 0.00 0.00 36.33 3.27
200 201 3.110358 GTGGTTACGTTGCCTTGAAAAC 58.890 45.455 0.00 0.00 0.00 2.43
201 202 2.223294 CGTGGTTACGTTGCCTTGAAAA 60.223 45.455 0.00 0.00 44.99 2.29
202 203 1.331138 CGTGGTTACGTTGCCTTGAAA 59.669 47.619 0.00 0.00 44.99 2.69
203 204 0.938713 CGTGGTTACGTTGCCTTGAA 59.061 50.000 0.00 0.00 44.99 2.69
204 205 2.607457 CGTGGTTACGTTGCCTTGA 58.393 52.632 0.00 0.00 44.99 3.02
246 247 9.248291 GCACCTTAATGTGTTTAATATGATTGG 57.752 33.333 11.79 0.00 38.52 3.16
247 248 8.957028 CGCACCTTAATGTGTTTAATATGATTG 58.043 33.333 11.79 0.00 38.52 2.67
248 249 7.647715 GCGCACCTTAATGTGTTTAATATGATT 59.352 33.333 0.30 0.00 38.52 2.57
249 250 7.138736 GCGCACCTTAATGTGTTTAATATGAT 58.861 34.615 0.30 0.00 38.52 2.45
250 251 6.491394 GCGCACCTTAATGTGTTTAATATGA 58.509 36.000 0.30 0.00 38.52 2.15
251 252 5.395195 CGCGCACCTTAATGTGTTTAATATG 59.605 40.000 8.75 0.00 38.52 1.78
252 253 5.504994 CCGCGCACCTTAATGTGTTTAATAT 60.505 40.000 8.75 0.00 38.52 1.28
253 254 4.201832 CCGCGCACCTTAATGTGTTTAATA 60.202 41.667 8.75 0.00 38.52 0.98
254 255 3.426963 CCGCGCACCTTAATGTGTTTAAT 60.427 43.478 8.75 0.00 38.52 1.40
255 256 2.095668 CCGCGCACCTTAATGTGTTTAA 60.096 45.455 8.75 0.00 38.52 1.52
256 257 1.465387 CCGCGCACCTTAATGTGTTTA 59.535 47.619 8.75 0.00 38.52 2.01
257 258 0.239879 CCGCGCACCTTAATGTGTTT 59.760 50.000 8.75 0.00 38.52 2.83
258 259 0.604243 TCCGCGCACCTTAATGTGTT 60.604 50.000 8.75 0.00 38.52 3.32
259 260 0.392461 ATCCGCGCACCTTAATGTGT 60.392 50.000 8.75 0.00 38.52 3.72
260 261 0.027979 CATCCGCGCACCTTAATGTG 59.972 55.000 8.75 6.52 39.29 3.21
261 262 1.095228 CCATCCGCGCACCTTAATGT 61.095 55.000 8.75 0.00 0.00 2.71
262 263 0.813610 TCCATCCGCGCACCTTAATG 60.814 55.000 8.75 0.99 0.00 1.90
263 264 0.532862 CTCCATCCGCGCACCTTAAT 60.533 55.000 8.75 0.00 0.00 1.40
264 265 1.153449 CTCCATCCGCGCACCTTAA 60.153 57.895 8.75 0.00 0.00 1.85
265 266 2.355986 ACTCCATCCGCGCACCTTA 61.356 57.895 8.75 0.00 0.00 2.69
266 267 3.706373 ACTCCATCCGCGCACCTT 61.706 61.111 8.75 0.00 0.00 3.50
267 268 4.457496 CACTCCATCCGCGCACCT 62.457 66.667 8.75 0.00 0.00 4.00
268 269 4.760047 ACACTCCATCCGCGCACC 62.760 66.667 8.75 0.00 0.00 5.01
269 270 3.490759 CACACTCCATCCGCGCAC 61.491 66.667 8.75 0.00 0.00 5.34
270 271 4.002506 ACACACTCCATCCGCGCA 62.003 61.111 8.75 0.00 0.00 6.09
271 272 3.490759 CACACACTCCATCCGCGC 61.491 66.667 0.00 0.00 0.00 6.86
272 273 3.490759 GCACACACTCCATCCGCG 61.491 66.667 0.00 0.00 0.00 6.46
273 274 2.046892 AGCACACACTCCATCCGC 60.047 61.111 0.00 0.00 0.00 5.54
274 275 1.807165 CGAGCACACACTCCATCCG 60.807 63.158 0.00 0.00 32.79 4.18
275 276 2.103042 GCGAGCACACACTCCATCC 61.103 63.158 0.00 0.00 32.79 3.51
276 277 2.447887 CGCGAGCACACACTCCATC 61.448 63.158 0.00 0.00 32.79 3.51
277 278 2.433145 CGCGAGCACACACTCCAT 60.433 61.111 0.00 0.00 32.79 3.41
309 310 0.944386 TTTTGTCTCGCTTGTCCAGC 59.056 50.000 0.00 0.00 46.31 4.85
310 311 2.599848 CGTTTTTGTCTCGCTTGTCCAG 60.600 50.000 0.00 0.00 0.00 3.86
311 312 1.329292 CGTTTTTGTCTCGCTTGTCCA 59.671 47.619 0.00 0.00 0.00 4.02
312 313 1.920272 GCGTTTTTGTCTCGCTTGTCC 60.920 52.381 0.00 0.00 45.29 4.02
313 314 1.385999 GCGTTTTTGTCTCGCTTGTC 58.614 50.000 0.00 0.00 45.29 3.18
314 315 3.526825 GCGTTTTTGTCTCGCTTGT 57.473 47.368 0.00 0.00 45.29 3.16
319 320 1.011684 TGCGTGCGTTTTTGTCTCG 60.012 52.632 0.00 0.00 0.00 4.04
320 321 0.928451 GGTGCGTGCGTTTTTGTCTC 60.928 55.000 0.00 0.00 0.00 3.36
321 322 1.063488 GGTGCGTGCGTTTTTGTCT 59.937 52.632 0.00 0.00 0.00 3.41
322 323 1.063488 AGGTGCGTGCGTTTTTGTC 59.937 52.632 0.00 0.00 0.00 3.18
323 324 1.226547 CAGGTGCGTGCGTTTTTGT 60.227 52.632 0.00 0.00 0.00 2.83
324 325 1.226547 ACAGGTGCGTGCGTTTTTG 60.227 52.632 0.00 0.00 0.00 2.44
325 326 1.226547 CACAGGTGCGTGCGTTTTT 60.227 52.632 0.00 0.00 0.00 1.94
326 327 1.090625 TACACAGGTGCGTGCGTTTT 61.091 50.000 0.00 0.00 40.73 2.43
327 328 0.882927 ATACACAGGTGCGTGCGTTT 60.883 50.000 0.00 0.00 40.73 3.60
328 329 0.882927 AATACACAGGTGCGTGCGTT 60.883 50.000 0.00 0.00 40.73 4.84
329 330 1.301401 AATACACAGGTGCGTGCGT 60.301 52.632 0.00 0.00 40.73 5.24
330 331 1.132436 CAATACACAGGTGCGTGCG 59.868 57.895 0.00 0.00 40.73 5.34
331 332 1.501741 CCAATACACAGGTGCGTGC 59.498 57.895 0.00 0.00 40.73 5.34
332 333 1.501741 GCCAATACACAGGTGCGTG 59.498 57.895 0.00 0.00 42.81 5.34
333 334 1.674322 GGCCAATACACAGGTGCGT 60.674 57.895 0.00 0.00 0.00 5.24
334 335 1.647545 CTGGCCAATACACAGGTGCG 61.648 60.000 7.01 0.00 0.00 5.34
335 336 0.322456 TCTGGCCAATACACAGGTGC 60.322 55.000 7.01 0.00 33.19 5.01
336 337 2.198827 TTCTGGCCAATACACAGGTG 57.801 50.000 7.01 0.00 33.19 4.00
337 338 2.969821 TTTCTGGCCAATACACAGGT 57.030 45.000 7.01 0.00 33.19 4.00
338 339 4.806640 ATTTTTCTGGCCAATACACAGG 57.193 40.909 7.01 0.00 33.19 4.00
339 340 6.071952 ACACTATTTTTCTGGCCAATACACAG 60.072 38.462 7.01 1.43 0.00 3.66
340 341 5.772672 ACACTATTTTTCTGGCCAATACACA 59.227 36.000 7.01 0.00 0.00 3.72
341 342 6.267496 ACACTATTTTTCTGGCCAATACAC 57.733 37.500 7.01 0.00 0.00 2.90
342 343 5.123186 CGACACTATTTTTCTGGCCAATACA 59.877 40.000 7.01 0.00 0.00 2.29
343 344 5.123344 ACGACACTATTTTTCTGGCCAATAC 59.877 40.000 7.01 0.00 0.00 1.89
344 345 5.250200 ACGACACTATTTTTCTGGCCAATA 58.750 37.500 7.01 0.00 0.00 1.90
345 346 4.079253 ACGACACTATTTTTCTGGCCAAT 58.921 39.130 7.01 0.00 0.00 3.16
346 347 3.482436 ACGACACTATTTTTCTGGCCAA 58.518 40.909 7.01 0.00 0.00 4.52
347 348 3.134574 ACGACACTATTTTTCTGGCCA 57.865 42.857 4.71 4.71 0.00 5.36
348 349 3.119955 GGAACGACACTATTTTTCTGGCC 60.120 47.826 0.00 0.00 0.00 5.36
349 350 3.119955 GGGAACGACACTATTTTTCTGGC 60.120 47.826 0.00 0.00 0.00 4.85
350 351 4.069304 TGGGAACGACACTATTTTTCTGG 58.931 43.478 0.00 0.00 0.00 3.86
351 352 5.238650 ACTTGGGAACGACACTATTTTTCTG 59.761 40.000 0.00 0.00 0.00 3.02
352 353 5.374071 ACTTGGGAACGACACTATTTTTCT 58.626 37.500 0.00 0.00 0.00 2.52
353 354 5.469084 AGACTTGGGAACGACACTATTTTTC 59.531 40.000 0.00 0.00 0.00 2.29
354 355 5.374071 AGACTTGGGAACGACACTATTTTT 58.626 37.500 0.00 0.00 0.00 1.94
355 356 4.969484 AGACTTGGGAACGACACTATTTT 58.031 39.130 0.00 0.00 0.00 1.82
356 357 4.618920 AGACTTGGGAACGACACTATTT 57.381 40.909 0.00 0.00 0.00 1.40
357 358 4.562963 GGAAGACTTGGGAACGACACTATT 60.563 45.833 0.00 0.00 0.00 1.73
358 359 3.056035 GGAAGACTTGGGAACGACACTAT 60.056 47.826 0.00 0.00 0.00 2.12
359 360 2.298163 GGAAGACTTGGGAACGACACTA 59.702 50.000 0.00 0.00 0.00 2.74
360 361 1.070289 GGAAGACTTGGGAACGACACT 59.930 52.381 0.00 0.00 0.00 3.55
361 362 1.070289 AGGAAGACTTGGGAACGACAC 59.930 52.381 0.00 0.00 0.00 3.67
362 363 1.420430 AGGAAGACTTGGGAACGACA 58.580 50.000 0.00 0.00 0.00 4.35
363 364 2.414806 GAAGGAAGACTTGGGAACGAC 58.585 52.381 0.00 0.00 40.21 4.34
364 365 1.346722 GGAAGGAAGACTTGGGAACGA 59.653 52.381 0.00 0.00 40.21 3.85
365 366 1.610886 GGGAAGGAAGACTTGGGAACG 60.611 57.143 0.00 0.00 40.21 3.95
366 367 1.271982 GGGGAAGGAAGACTTGGGAAC 60.272 57.143 0.00 0.00 40.21 3.62
367 368 1.073098 GGGGAAGGAAGACTTGGGAA 58.927 55.000 0.00 0.00 40.21 3.97
368 369 0.104144 TGGGGAAGGAAGACTTGGGA 60.104 55.000 0.00 0.00 40.21 4.37
369 370 0.329596 CTGGGGAAGGAAGACTTGGG 59.670 60.000 0.00 0.00 40.21 4.12
370 371 1.362224 TCTGGGGAAGGAAGACTTGG 58.638 55.000 0.00 0.00 40.21 3.61
371 372 2.943199 GCATCTGGGGAAGGAAGACTTG 60.943 54.545 0.00 0.00 40.21 3.16
372 373 1.283321 GCATCTGGGGAAGGAAGACTT 59.717 52.381 0.00 0.00 43.65 3.01
373 374 0.915364 GCATCTGGGGAAGGAAGACT 59.085 55.000 0.00 0.00 0.00 3.24
374 375 0.620556 TGCATCTGGGGAAGGAAGAC 59.379 55.000 0.00 0.00 0.00 3.01
375 376 0.914644 CTGCATCTGGGGAAGGAAGA 59.085 55.000 0.00 0.00 0.00 2.87
376 377 0.750911 GCTGCATCTGGGGAAGGAAG 60.751 60.000 0.00 0.00 0.00 3.46
377 378 1.304282 GCTGCATCTGGGGAAGGAA 59.696 57.895 0.00 0.00 0.00 3.36
378 379 2.683465 GGCTGCATCTGGGGAAGGA 61.683 63.158 0.50 0.00 0.00 3.36
379 380 2.123982 GGCTGCATCTGGGGAAGG 60.124 66.667 0.50 0.00 0.00 3.46
380 381 2.515523 CGGCTGCATCTGGGGAAG 60.516 66.667 0.50 0.00 0.00 3.46
381 382 4.802051 GCGGCTGCATCTGGGGAA 62.802 66.667 14.08 0.00 42.15 3.97
386 387 4.827087 AGACGGCGGCTGCATCTG 62.827 66.667 17.94 8.29 45.35 2.90
387 388 4.087892 AAGACGGCGGCTGCATCT 62.088 61.111 19.84 18.19 45.35 2.90
388 389 3.567797 GAAGACGGCGGCTGCATC 61.568 66.667 19.84 16.09 45.35 3.91
389 390 4.087892 AGAAGACGGCGGCTGCAT 62.088 61.111 25.45 3.65 45.35 3.96
390 391 4.742201 GAGAAGACGGCGGCTGCA 62.742 66.667 25.45 0.00 45.35 4.41
392 393 3.708220 GAGGAGAAGACGGCGGCTG 62.708 68.421 19.84 7.39 0.00 4.85
393 394 3.453679 GAGGAGAAGACGGCGGCT 61.454 66.667 10.88 10.88 0.00 5.52
394 395 2.508586 AAAGAGGAGAAGACGGCGGC 62.509 60.000 13.24 8.92 0.00 6.53
395 396 0.458716 GAAAGAGGAGAAGACGGCGG 60.459 60.000 13.24 0.00 0.00 6.13
396 397 0.458716 GGAAAGAGGAGAAGACGGCG 60.459 60.000 4.80 4.80 0.00 6.46
397 398 0.108089 GGGAAAGAGGAGAAGACGGC 60.108 60.000 0.00 0.00 0.00 5.68
398 399 1.066787 GTGGGAAAGAGGAGAAGACGG 60.067 57.143 0.00 0.00 0.00 4.79
399 400 1.402984 CGTGGGAAAGAGGAGAAGACG 60.403 57.143 0.00 0.00 0.00 4.18
400 401 1.673329 GCGTGGGAAAGAGGAGAAGAC 60.673 57.143 0.00 0.00 0.00 3.01
401 402 0.608640 GCGTGGGAAAGAGGAGAAGA 59.391 55.000 0.00 0.00 0.00 2.87
402 403 0.321671 TGCGTGGGAAAGAGGAGAAG 59.678 55.000 0.00 0.00 0.00 2.85
403 404 0.762418 TTGCGTGGGAAAGAGGAGAA 59.238 50.000 0.00 0.00 0.00 2.87
404 405 0.762418 TTTGCGTGGGAAAGAGGAGA 59.238 50.000 0.00 0.00 0.00 3.71
405 406 0.875059 GTTTGCGTGGGAAAGAGGAG 59.125 55.000 0.00 0.00 0.00 3.69
406 407 0.472471 AGTTTGCGTGGGAAAGAGGA 59.528 50.000 0.00 0.00 0.00 3.71
407 408 0.875059 GAGTTTGCGTGGGAAAGAGG 59.125 55.000 0.00 0.00 0.00 3.69
408 409 1.801178 GAGAGTTTGCGTGGGAAAGAG 59.199 52.381 0.00 0.00 0.00 2.85
409 410 1.416401 AGAGAGTTTGCGTGGGAAAGA 59.584 47.619 0.00 0.00 0.00 2.52
410 411 1.884235 AGAGAGTTTGCGTGGGAAAG 58.116 50.000 0.00 0.00 0.00 2.62
411 412 2.158813 AGAAGAGAGTTTGCGTGGGAAA 60.159 45.455 0.00 0.00 0.00 3.13
412 413 1.416401 AGAAGAGAGTTTGCGTGGGAA 59.584 47.619 0.00 0.00 0.00 3.97
413 414 1.048601 AGAAGAGAGTTTGCGTGGGA 58.951 50.000 0.00 0.00 0.00 4.37
414 415 2.743636 TAGAAGAGAGTTTGCGTGGG 57.256 50.000 0.00 0.00 0.00 4.61
415 416 3.190874 GGATAGAAGAGAGTTTGCGTGG 58.809 50.000 0.00 0.00 0.00 4.94
416 417 3.849911 TGGATAGAAGAGAGTTTGCGTG 58.150 45.455 0.00 0.00 0.00 5.34
417 418 4.160439 TCATGGATAGAAGAGAGTTTGCGT 59.840 41.667 0.00 0.00 0.00 5.24
418 419 4.505922 GTCATGGATAGAAGAGAGTTTGCG 59.494 45.833 0.00 0.00 0.00 4.85
419 420 4.813697 GGTCATGGATAGAAGAGAGTTTGC 59.186 45.833 0.00 0.00 0.00 3.68
420 421 5.046529 CGGTCATGGATAGAAGAGAGTTTG 58.953 45.833 0.00 0.00 0.00 2.93
421 422 4.100189 CCGGTCATGGATAGAAGAGAGTTT 59.900 45.833 0.00 0.00 0.00 2.66
422 423 3.639094 CCGGTCATGGATAGAAGAGAGTT 59.361 47.826 0.00 0.00 0.00 3.01
423 424 3.226777 CCGGTCATGGATAGAAGAGAGT 58.773 50.000 0.00 0.00 0.00 3.24
424 425 2.029470 GCCGGTCATGGATAGAAGAGAG 60.029 54.545 1.90 0.00 0.00 3.20
425 426 1.964223 GCCGGTCATGGATAGAAGAGA 59.036 52.381 1.90 0.00 0.00 3.10
426 427 1.001406 GGCCGGTCATGGATAGAAGAG 59.999 57.143 0.00 0.00 0.00 2.85
427 428 1.048601 GGCCGGTCATGGATAGAAGA 58.951 55.000 0.00 0.00 0.00 2.87
428 429 0.319900 CGGCCGGTCATGGATAGAAG 60.320 60.000 20.10 0.00 0.00 2.85
429 430 1.745890 CGGCCGGTCATGGATAGAA 59.254 57.895 20.10 0.00 0.00 2.10
430 431 2.207229 CCGGCCGGTCATGGATAGA 61.207 63.158 36.64 0.00 0.00 1.98
431 432 2.343758 CCGGCCGGTCATGGATAG 59.656 66.667 36.64 6.12 0.00 2.08
432 433 3.238497 CCCGGCCGGTCATGGATA 61.238 66.667 40.52 0.00 0.00 2.59
445 446 2.766651 TAACCCTAGCTGGCCCGG 60.767 66.667 0.00 0.00 0.00 5.73
446 447 2.504519 GTAACCCTAGCTGGCCCG 59.495 66.667 0.00 0.00 0.00 6.13
447 448 1.999002 TGGTAACCCTAGCTGGCCC 60.999 63.158 0.00 0.00 0.00 5.80
448 449 1.223763 GTGGTAACCCTAGCTGGCC 59.776 63.158 0.00 0.00 0.00 5.36
449 450 1.223763 GGTGGTAACCCTAGCTGGC 59.776 63.158 0.00 0.00 41.04 4.85
458 459 2.663075 GGGGAGACGGGTGGTAACC 61.663 68.421 0.00 0.00 46.81 2.85
459 460 2.663075 GGGGGAGACGGGTGGTAAC 61.663 68.421 0.00 0.00 0.00 2.50
460 461 1.517538 TAGGGGGAGACGGGTGGTAA 61.518 60.000 0.00 0.00 0.00 2.85
461 462 1.298906 ATAGGGGGAGACGGGTGGTA 61.299 60.000 0.00 0.00 0.00 3.25
462 463 2.600735 GATAGGGGGAGACGGGTGGT 62.601 65.000 0.00 0.00 0.00 4.16
463 464 1.837499 GATAGGGGGAGACGGGTGG 60.837 68.421 0.00 0.00 0.00 4.61
464 465 0.481567 TAGATAGGGGGAGACGGGTG 59.518 60.000 0.00 0.00 0.00 4.61
465 466 1.077334 CATAGATAGGGGGAGACGGGT 59.923 57.143 0.00 0.00 0.00 5.28
466 467 1.358103 TCATAGATAGGGGGAGACGGG 59.642 57.143 0.00 0.00 0.00 5.28
467 468 2.448453 GTCATAGATAGGGGGAGACGG 58.552 57.143 0.00 0.00 0.00 4.79
468 469 2.448453 GGTCATAGATAGGGGGAGACG 58.552 57.143 0.00 0.00 0.00 4.18
469 470 2.448453 CGGTCATAGATAGGGGGAGAC 58.552 57.143 0.00 0.00 0.00 3.36
470 471 1.358103 CCGGTCATAGATAGGGGGAGA 59.642 57.143 0.00 0.00 0.00 3.71
471 472 1.358103 TCCGGTCATAGATAGGGGGAG 59.642 57.143 0.00 0.00 0.00 4.30
472 473 1.463531 TCCGGTCATAGATAGGGGGA 58.536 55.000 0.00 0.00 0.00 4.81
473 474 2.389715 GATCCGGTCATAGATAGGGGG 58.610 57.143 0.00 0.00 0.00 5.40
474 475 2.389715 GGATCCGGTCATAGATAGGGG 58.610 57.143 0.00 0.00 0.00 4.79
475 476 2.025155 CGGATCCGGTCATAGATAGGG 58.975 57.143 26.95 0.00 35.56 3.53
476 477 1.405821 GCGGATCCGGTCATAGATAGG 59.594 57.143 33.98 3.12 40.19 2.57
477 478 1.064208 CGCGGATCCGGTCATAGATAG 59.936 57.143 33.98 3.33 40.19 2.08
478 479 1.092348 CGCGGATCCGGTCATAGATA 58.908 55.000 33.98 0.00 40.19 1.98
479 480 1.595993 CCGCGGATCCGGTCATAGAT 61.596 60.000 33.98 0.00 43.24 1.98
480 481 2.265904 CCGCGGATCCGGTCATAGA 61.266 63.158 33.98 0.00 43.24 1.98
481 482 2.258591 CCGCGGATCCGGTCATAG 59.741 66.667 33.98 6.22 43.24 2.23
495 496 3.704231 ATGTGATGGCCACCTCCGC 62.704 63.158 8.16 5.16 45.09 5.54
496 497 1.820906 CATGTGATGGCCACCTCCG 60.821 63.158 8.16 0.00 45.09 4.63
497 498 2.123428 GCATGTGATGGCCACCTCC 61.123 63.158 8.16 0.00 45.09 4.30
498 499 3.518003 GCATGTGATGGCCACCTC 58.482 61.111 8.16 2.62 45.09 3.85
505 506 2.098607 GTCAACAGATGGCATGTGATGG 59.901 50.000 28.90 17.18 32.41 3.51
506 507 2.223180 CGTCAACAGATGGCATGTGATG 60.223 50.000 28.90 25.93 31.20 3.07
507 508 2.011947 CGTCAACAGATGGCATGTGAT 58.988 47.619 28.90 16.21 31.20 3.06
508 509 1.441738 CGTCAACAGATGGCATGTGA 58.558 50.000 28.90 12.61 31.20 3.58
509 510 0.448990 CCGTCAACAGATGGCATGTG 59.551 55.000 21.73 21.73 31.20 3.21
510 511 0.677731 CCCGTCAACAGATGGCATGT 60.678 55.000 3.81 0.00 37.16 3.21
511 512 1.996786 GCCCGTCAACAGATGGCATG 61.997 60.000 3.81 0.00 37.16 4.06
512 513 1.750399 GCCCGTCAACAGATGGCAT 60.750 57.895 0.00 0.00 37.16 4.40
513 514 2.359850 GCCCGTCAACAGATGGCA 60.360 61.111 0.00 0.00 37.16 4.92
514 515 3.499737 CGCCCGTCAACAGATGGC 61.500 66.667 0.00 0.00 37.16 4.40
515 516 1.811266 CTCGCCCGTCAACAGATGG 60.811 63.158 0.00 0.00 38.04 3.51
516 517 1.811266 CCTCGCCCGTCAACAGATG 60.811 63.158 0.00 0.00 0.00 2.90
517 518 1.541310 TTCCTCGCCCGTCAACAGAT 61.541 55.000 0.00 0.00 0.00 2.90
518 519 2.154798 CTTCCTCGCCCGTCAACAGA 62.155 60.000 0.00 0.00 0.00 3.41
519 520 1.738099 CTTCCTCGCCCGTCAACAG 60.738 63.158 0.00 0.00 0.00 3.16
520 521 2.342279 CTTCCTCGCCCGTCAACA 59.658 61.111 0.00 0.00 0.00 3.33
521 522 2.434359 CCTTCCTCGCCCGTCAAC 60.434 66.667 0.00 0.00 0.00 3.18
522 523 4.388499 GCCTTCCTCGCCCGTCAA 62.388 66.667 0.00 0.00 0.00 3.18
524 525 4.516195 GAGCCTTCCTCGCCCGTC 62.516 72.222 0.00 0.00 0.00 4.79
526 527 3.798954 GATGAGCCTTCCTCGCCCG 62.799 68.421 0.00 0.00 43.82 6.13
527 528 2.110006 GATGAGCCTTCCTCGCCC 59.890 66.667 0.00 0.00 43.82 6.13
528 529 2.279784 CGATGAGCCTTCCTCGCC 60.280 66.667 0.00 0.00 43.82 5.54
539 540 0.179240 GTTGTCGTTGCTGCGATGAG 60.179 55.000 12.02 0.00 43.07 2.90
540 541 1.859398 GTTGTCGTTGCTGCGATGA 59.141 52.632 7.71 7.71 43.07 2.92
541 542 1.507713 CGTTGTCGTTGCTGCGATG 60.508 57.895 2.53 2.53 43.07 3.84
542 543 2.667318 CCGTTGTCGTTGCTGCGAT 61.667 57.895 6.48 0.00 43.07 4.58
543 544 3.334751 CCGTTGTCGTTGCTGCGA 61.335 61.111 0.00 0.00 38.68 5.10
544 545 3.281751 CTCCGTTGTCGTTGCTGCG 62.282 63.158 0.00 0.00 35.01 5.18
545 546 1.891060 CTCTCCGTTGTCGTTGCTGC 61.891 60.000 0.00 0.00 35.01 5.25
546 547 0.597637 ACTCTCCGTTGTCGTTGCTG 60.598 55.000 0.00 0.00 35.01 4.41
547 548 0.104304 AACTCTCCGTTGTCGTTGCT 59.896 50.000 0.00 0.00 33.72 3.91
548 549 0.232303 CAACTCTCCGTTGTCGTTGC 59.768 55.000 0.00 0.00 46.23 4.17
556 557 3.254024 ATGGCCGCAACTCTCCGTT 62.254 57.895 0.00 0.00 35.88 4.44
557 558 3.665675 GATGGCCGCAACTCTCCGT 62.666 63.158 0.00 0.00 0.00 4.69
558 559 2.892425 GATGGCCGCAACTCTCCG 60.892 66.667 0.00 0.00 0.00 4.63
559 560 2.514824 GGATGGCCGCAACTCTCC 60.515 66.667 0.00 0.00 0.00 3.71
560 561 1.522580 GAGGATGGCCGCAACTCTC 60.523 63.158 0.00 0.00 39.96 3.20
561 562 1.992277 AGAGGATGGCCGCAACTCT 60.992 57.895 11.82 11.82 39.96 3.24
562 563 1.817099 CAGAGGATGGCCGCAACTC 60.817 63.158 0.00 3.17 39.96 3.01
563 564 2.270205 CAGAGGATGGCCGCAACT 59.730 61.111 0.00 0.00 39.96 3.16
564 565 2.825836 CCAGAGGATGGCCGCAAC 60.826 66.667 0.00 0.00 43.83 4.17
572 573 0.742281 CCACTTGTCGCCAGAGGATG 60.742 60.000 0.00 0.00 0.00 3.51
573 574 0.904865 TCCACTTGTCGCCAGAGGAT 60.905 55.000 0.00 0.00 0.00 3.24
574 575 1.533033 TCCACTTGTCGCCAGAGGA 60.533 57.895 0.00 0.00 0.00 3.71
575 576 1.374758 GTCCACTTGTCGCCAGAGG 60.375 63.158 0.00 0.00 0.00 3.69
576 577 0.668706 CAGTCCACTTGTCGCCAGAG 60.669 60.000 0.00 0.00 0.00 3.35
577 578 1.367471 CAGTCCACTTGTCGCCAGA 59.633 57.895 0.00 0.00 0.00 3.86
578 579 2.320587 GCAGTCCACTTGTCGCCAG 61.321 63.158 0.00 0.00 0.00 4.85
579 580 2.280797 GCAGTCCACTTGTCGCCA 60.281 61.111 0.00 0.00 0.00 5.69
580 581 3.050275 GGCAGTCCACTTGTCGCC 61.050 66.667 0.00 0.00 0.00 5.54
581 582 3.050275 GGGCAGTCCACTTGTCGC 61.050 66.667 0.00 0.00 35.00 5.19
582 583 2.358737 GGGGCAGTCCACTTGTCG 60.359 66.667 0.00 0.00 37.22 4.35
583 584 2.034221 GGGGGCAGTCCACTTGTC 59.966 66.667 0.00 0.00 35.56 3.18
608 609 3.322466 CGCAGGGGAGAGTGGGTT 61.322 66.667 0.00 0.00 0.00 4.11
652 653 0.168128 CCAAACGAAATGGCGAGGTC 59.832 55.000 0.00 0.00 34.83 3.85
658 659 2.741517 CCCAAAATCCAAACGAAATGGC 59.258 45.455 0.00 0.00 37.88 4.40
830 832 8.945057 GCACTTGAATCTCTTCTTCTTAATTCT 58.055 33.333 0.00 0.00 32.29 2.40
831 833 8.945057 AGCACTTGAATCTCTTCTTCTTAATTC 58.055 33.333 0.00 0.00 32.29 2.17
832 834 8.860780 AGCACTTGAATCTCTTCTTCTTAATT 57.139 30.769 0.00 0.00 32.29 1.40
833 835 8.728833 CAAGCACTTGAATCTCTTCTTCTTAAT 58.271 33.333 4.31 0.00 42.93 1.40
834 836 7.716998 ACAAGCACTTGAATCTCTTCTTCTTAA 59.283 33.333 16.95 0.00 42.93 1.85
944 946 6.582295 GCATCTGAAAACGTCAAACAATACAT 59.418 34.615 0.00 0.00 35.22 2.29
980 982 3.358111 TGTTCTGTTGTCCTTGGTTGA 57.642 42.857 0.00 0.00 0.00 3.18
1278 1286 1.525923 CCCATCTGGAGCAGGACAG 59.474 63.158 0.00 0.00 37.39 3.51
1298 1306 1.736645 CGCCGAACACGAGGACATT 60.737 57.895 0.00 0.00 0.00 2.71
1422 1438 2.472695 ACTATGCGCAAAGAACAGGA 57.527 45.000 17.11 0.00 0.00 3.86
1495 1515 2.621668 GCAGCTTAACCCCATCCTTCTT 60.622 50.000 0.00 0.00 0.00 2.52
1617 1639 3.024784 CACGCAGCAAGTTGAGCA 58.975 55.556 17.34 0.00 0.00 4.26
1784 1809 6.147437 AGGGGATATTTAAACAGGACAACA 57.853 37.500 0.00 0.00 0.00 3.33
1831 1856 7.459125 ACCTATCTCCTGCCTTATCATGATAAA 59.541 37.037 24.61 12.38 33.34 1.40
1838 1863 3.928754 ACACCTATCTCCTGCCTTATCA 58.071 45.455 0.00 0.00 0.00 2.15
2004 2038 1.140312 AGGGCTCTTGGACAGAACAA 58.860 50.000 0.00 0.00 0.00 2.83
2009 2043 0.689623 ACTTCAGGGCTCTTGGACAG 59.310 55.000 0.00 0.00 0.00 3.51
2054 2105 5.009911 TGCAGTTCTAGTTCAATGCAAACAT 59.990 36.000 10.54 0.00 40.43 2.71
2192 2261 7.386059 TGCATCTAATTAGAGTCTCAACAACA 58.614 34.615 19.51 4.20 35.50 3.33
2197 2266 9.755804 CACTAATGCATCTAATTAGAGTCTCAA 57.244 33.333 19.51 4.69 39.12 3.02
2246 2315 5.541868 TGGTGGGCATTCTTCTAAAAATCAA 59.458 36.000 0.00 0.00 0.00 2.57
2375 2445 8.335532 TGTCATAAAACTTCGATGGAGAAATT 57.664 30.769 3.12 0.00 0.00 1.82
2485 2563 5.791367 AGTTTGATTGACATGACGATGAG 57.209 39.130 0.00 0.00 33.36 2.90
2487 2565 8.900511 ATTAAAGTTTGATTGACATGACGATG 57.099 30.769 0.00 0.00 35.49 3.84
2518 2596 4.262592 GGAACATCTCCTTTGTTGGCATTT 60.263 41.667 0.00 0.00 41.61 2.32
2549 2627 0.242825 TCTACTCGCCGGTTTGTCAG 59.757 55.000 1.90 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.