Multiple sequence alignment - TraesCS7A01G412600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G412600 chr7A 100.000 3153 0 0 1 3153 603332760 603329608 0.000000e+00 5823.0
1 TraesCS7A01G412600 chr7A 88.281 1425 147 14 1069 2488 566788221 566789630 0.000000e+00 1688.0
2 TraesCS7A01G412600 chr7A 87.675 1428 171 3 1069 2492 603553287 603551861 0.000000e+00 1657.0
3 TraesCS7A01G412600 chr7A 100.000 282 0 0 3436 3717 603329325 603329044 4.250000e-144 521.0
4 TraesCS7A01G412600 chr7A 93.594 281 15 3 3436 3714 238594144 238594423 2.070000e-112 416.0
5 TraesCS7A01G412600 chr7A 93.190 279 16 3 3436 3712 454162652 454162929 1.240000e-109 407.0
6 TraesCS7A01G412600 chr7A 91.034 290 17 5 3436 3717 540895149 540894861 2.090000e-102 383.0
7 TraesCS7A01G412600 chr7D 93.799 2161 87 16 983 3130 523057113 523054987 0.000000e+00 3205.0
8 TraesCS7A01G412600 chr7D 87.561 1431 170 3 1070 2492 523133840 523132410 0.000000e+00 1650.0
9 TraesCS7A01G412600 chr7D 87.570 1424 159 12 1069 2488 500773725 500775134 0.000000e+00 1633.0
10 TraesCS7A01G412600 chr7D 87.662 1005 95 16 6 995 523058125 523057135 0.000000e+00 1142.0
11 TraesCS7A01G412600 chr7D 100.000 30 0 0 525 554 494598519 494598548 5.190000e-04 56.5
12 TraesCS7A01G412600 chr7B 93.501 1554 88 7 979 2523 557257559 557256010 0.000000e+00 2298.0
13 TraesCS7A01G412600 chr7B 88.819 1431 153 2 1069 2492 557491634 557490204 0.000000e+00 1749.0
14 TraesCS7A01G412600 chr7B 87.606 1420 159 11 1069 2485 528871621 528873026 0.000000e+00 1631.0
15 TraesCS7A01G412600 chr7B 86.792 1007 106 16 6 995 557258568 557257572 0.000000e+00 1098.0
16 TraesCS7A01G412600 chr7B 88.838 439 25 11 2566 2987 557255915 557255484 5.500000e-143 518.0
17 TraesCS7A01G412600 chr2D 84.660 1382 189 16 1110 2472 569153494 569152117 0.000000e+00 1356.0
18 TraesCS7A01G412600 chr2D 100.000 30 0 0 525 554 243662828 243662799 5.190000e-04 56.5
19 TraesCS7A01G412600 chr2A 84.203 1380 197 12 1111 2472 708862315 708863691 0.000000e+00 1321.0
20 TraesCS7A01G412600 chr2A 93.594 281 15 2 3436 3714 101837235 101837514 2.070000e-112 416.0
21 TraesCS7A01G412600 chr2A 100.000 30 0 0 525 554 283947794 283947765 5.190000e-04 56.5
22 TraesCS7A01G412600 chr1A 94.346 283 13 3 3437 3717 572729317 572729036 7.370000e-117 431.0
23 TraesCS7A01G412600 chr1A 91.349 289 17 3 3436 3717 544938828 544938541 4.500000e-104 388.0
24 TraesCS7A01G412600 chr4A 92.308 286 14 3 3436 3714 127685909 127686193 2.080000e-107 399.0
25 TraesCS7A01G412600 chr4A 91.459 281 21 3 3436 3714 514799092 514799371 2.090000e-102 383.0
26 TraesCS7A01G412600 chr6A 91.003 289 18 3 3436 3717 399620744 399620457 2.090000e-102 383.0
27 TraesCS7A01G412600 chr4D 83.942 137 21 1 465 601 488501259 488501124 3.010000e-26 130.0
28 TraesCS7A01G412600 chr4D 100.000 29 0 0 525 553 72395960 72395988 2.000000e-03 54.7
29 TraesCS7A01G412600 chr4D 100.000 29 0 0 525 553 72537378 72537406 2.000000e-03 54.7
30 TraesCS7A01G412600 chr5A 73.984 246 47 13 21 257 478990082 478990319 2.380000e-12 84.2
31 TraesCS7A01G412600 chr2B 96.970 33 1 0 522 554 337075150 337075182 5.190000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G412600 chr7A 603329044 603332760 3716 True 3172.000000 5823 100.000000 1 3717 2 chr7A.!!$R3 3716
1 TraesCS7A01G412600 chr7A 566788221 566789630 1409 False 1688.000000 1688 88.281000 1069 2488 1 chr7A.!!$F3 1419
2 TraesCS7A01G412600 chr7A 603551861 603553287 1426 True 1657.000000 1657 87.675000 1069 2492 1 chr7A.!!$R2 1423
3 TraesCS7A01G412600 chr7D 523054987 523058125 3138 True 2173.500000 3205 90.730500 6 3130 2 chr7D.!!$R2 3124
4 TraesCS7A01G412600 chr7D 523132410 523133840 1430 True 1650.000000 1650 87.561000 1070 2492 1 chr7D.!!$R1 1422
5 TraesCS7A01G412600 chr7D 500773725 500775134 1409 False 1633.000000 1633 87.570000 1069 2488 1 chr7D.!!$F2 1419
6 TraesCS7A01G412600 chr7B 557490204 557491634 1430 True 1749.000000 1749 88.819000 1069 2492 1 chr7B.!!$R1 1423
7 TraesCS7A01G412600 chr7B 528871621 528873026 1405 False 1631.000000 1631 87.606000 1069 2485 1 chr7B.!!$F1 1416
8 TraesCS7A01G412600 chr7B 557255484 557258568 3084 True 1304.666667 2298 89.710333 6 2987 3 chr7B.!!$R2 2981
9 TraesCS7A01G412600 chr2D 569152117 569153494 1377 True 1356.000000 1356 84.660000 1110 2472 1 chr2D.!!$R2 1362
10 TraesCS7A01G412600 chr2A 708862315 708863691 1376 False 1321.000000 1321 84.203000 1111 2472 1 chr2A.!!$F2 1361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.103208 GATGCGGAGTTCATCGGTCT 59.897 55.0 0.00 0.00 32.14 3.85 F
72 73 0.179100 ATGCGGAGTTCATCGGTCTG 60.179 55.0 0.00 0.00 0.00 3.51 F
1054 1105 0.030773 TGAGATCACCTATGCGACGC 59.969 55.0 14.19 14.19 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1035 1086 0.030773 GCGTCGCATAGGTGATCTCA 59.969 55.000 13.44 0.0 35.69 3.27 R
1196 1254 1.002087 GTGGAGGAACGTGACTTGGAT 59.998 52.381 0.00 0.0 0.00 3.41 R
2739 2882 1.228367 GCCATGATTCCCCTGCGAT 60.228 57.895 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.837578 GATCGGCCGACCAGAGTA 58.162 61.111 33.75 5.46 34.57 2.59
56 57 0.249489 ATCGACAACTAGGCCGATGC 60.249 55.000 0.00 0.00 39.84 3.91
71 72 0.103208 GATGCGGAGTTCATCGGTCT 59.897 55.000 0.00 0.00 32.14 3.85
72 73 0.179100 ATGCGGAGTTCATCGGTCTG 60.179 55.000 0.00 0.00 0.00 3.51
79 80 2.166459 GAGTTCATCGGTCTGGACATCA 59.834 50.000 3.10 0.00 0.00 3.07
80 81 2.093973 AGTTCATCGGTCTGGACATCAC 60.094 50.000 3.10 0.00 0.00 3.06
84 85 1.517257 CGGTCTGGACATCACGCTC 60.517 63.158 3.10 0.00 0.00 5.03
103 106 3.060602 CTCAACCGTCAAGGAGAAGAAC 58.939 50.000 0.00 0.00 45.00 3.01
104 107 1.792949 CAACCGTCAAGGAGAAGAACG 59.207 52.381 0.00 0.00 45.00 3.95
125 128 5.814314 CGAGACACGGATTATTCTTGATC 57.186 43.478 0.00 0.00 38.46 2.92
137 140 7.224362 GGATTATTCTTGATCAGTGTGACTCTG 59.776 40.741 8.27 8.27 0.00 3.35
144 147 2.430921 GTGTGACTCTGGTCGGCG 60.431 66.667 0.00 0.00 44.83 6.46
151 154 2.443952 TCTGGTCGGCGGGATGAT 60.444 61.111 7.21 0.00 0.00 2.45
172 175 2.970324 GTGACGGCGAGGTTTGCA 60.970 61.111 16.62 0.00 0.00 4.08
183 186 1.541588 GAGGTTTGCAGCGGAAAATCT 59.458 47.619 2.30 2.30 35.60 2.40
205 208 1.591594 CCTCGTGCACGCGGAATAT 60.592 57.895 38.25 0.00 46.30 1.28
216 219 4.299155 CACGCGGAATATGAGTTCTATGT 58.701 43.478 12.47 0.00 0.00 2.29
218 221 3.121944 CGCGGAATATGAGTTCTATGTGC 59.878 47.826 0.00 0.00 0.00 4.57
219 222 4.058124 GCGGAATATGAGTTCTATGTGCA 58.942 43.478 0.00 0.00 0.00 4.57
230 233 1.275010 TCTATGTGCAGCGGAACAAGA 59.725 47.619 0.39 3.98 35.76 3.02
231 234 2.093500 TCTATGTGCAGCGGAACAAGAT 60.093 45.455 0.39 0.00 35.76 2.40
235 238 1.470098 GTGCAGCGGAACAAGATGAAT 59.530 47.619 0.00 0.00 0.00 2.57
241 244 4.272018 CAGCGGAACAAGATGAATAAGGAG 59.728 45.833 0.00 0.00 0.00 3.69
242 245 3.561725 GCGGAACAAGATGAATAAGGAGG 59.438 47.826 0.00 0.00 0.00 4.30
243 246 4.770795 CGGAACAAGATGAATAAGGAGGT 58.229 43.478 0.00 0.00 0.00 3.85
246 249 6.180472 GGAACAAGATGAATAAGGAGGTGAA 58.820 40.000 0.00 0.00 0.00 3.18
278 281 2.240918 AAGGCTGGCCCCTTGATGA 61.241 57.895 12.13 0.00 43.43 2.92
289 292 1.012086 CCTTGATGATGGTCGTGCTG 58.988 55.000 0.00 0.00 0.00 4.41
301 304 2.614481 GGTCGTGCTGGATAGTTTGGAA 60.614 50.000 0.00 0.00 0.00 3.53
303 306 3.689649 GTCGTGCTGGATAGTTTGGAATT 59.310 43.478 0.00 0.00 0.00 2.17
352 361 0.253610 ATCGACTGGACGACCTCTCT 59.746 55.000 5.33 0.00 44.84 3.10
376 385 8.749354 TCTGATGAGTATTCTGCAGTAGTTTTA 58.251 33.333 14.67 0.00 31.52 1.52
430 443 9.985730 TCAGAACTACTTTTAAGTTTTATCGGA 57.014 29.630 0.00 0.02 40.37 4.55
482 496 8.723311 CATGTTTGAAATTTGCAATGTTCCTAT 58.277 29.630 16.03 0.00 0.00 2.57
577 591 7.591006 AACATGTTTGAGATGATGCAAAATC 57.409 32.000 4.92 0.00 35.95 2.17
580 594 5.472148 TGTTTGAGATGATGCAAAATCCAC 58.528 37.500 8.05 4.79 35.95 4.02
582 596 5.571784 TTGAGATGATGCAAAATCCACTC 57.428 39.130 8.05 5.70 0.00 3.51
588 602 5.988310 TGATGCAAAATCCACTCTTTGAT 57.012 34.783 0.00 0.00 35.03 2.57
629 644 3.824443 GTGTGCCCAAAATACTTACCTGT 59.176 43.478 0.00 0.00 0.00 4.00
756 771 4.712122 TTTTCATAATTTCGGGAGGCAC 57.288 40.909 0.00 0.00 0.00 5.01
759 774 1.949525 CATAATTTCGGGAGGCACTGG 59.050 52.381 0.00 0.00 41.55 4.00
882 897 5.447624 AGTATTTGTTTCGGTCTTTTGGG 57.552 39.130 0.00 0.00 0.00 4.12
883 898 2.588027 TTTGTTTCGGTCTTTTGGGC 57.412 45.000 0.00 0.00 0.00 5.36
901 916 6.377327 TTGGGCGAAATAAAATCAGAGATC 57.623 37.500 0.00 0.00 0.00 2.75
904 919 5.474876 GGGCGAAATAAAATCAGAGATCCAT 59.525 40.000 0.00 0.00 0.00 3.41
920 935 8.566260 CAGAGATCCATTGGATTTCAGTATTTC 58.434 37.037 28.53 11.72 43.26 2.17
981 996 9.337091 CTTTCCATGGTAAAAATACAGTTAACG 57.663 33.333 12.58 0.00 0.00 3.18
1022 1073 1.006825 CAACGAACAGCGACATCCGA 61.007 55.000 0.00 0.00 44.57 4.55
1035 1086 2.287915 GACATCCGAACGCATGCTATTT 59.712 45.455 17.13 5.93 0.00 1.40
1047 1098 4.934001 CGCATGCTATTTGAGATCACCTAT 59.066 41.667 17.13 0.00 0.00 2.57
1048 1099 5.163884 CGCATGCTATTTGAGATCACCTATG 60.164 44.000 17.13 0.00 0.00 2.23
1051 1102 4.039124 TGCTATTTGAGATCACCTATGCGA 59.961 41.667 0.00 0.00 0.00 5.10
1054 1105 0.030773 TGAGATCACCTATGCGACGC 59.969 55.000 14.19 14.19 0.00 5.19
1055 1106 0.312416 GAGATCACCTATGCGACGCT 59.688 55.000 22.08 9.12 0.00 5.07
1056 1107 0.031314 AGATCACCTATGCGACGCTG 59.969 55.000 22.08 10.55 0.00 5.18
1057 1108 0.030773 GATCACCTATGCGACGCTGA 59.969 55.000 22.08 15.81 0.00 4.26
1060 1111 0.179137 CACCTATGCGACGCTGAGAA 60.179 55.000 22.08 0.00 0.00 2.87
1061 1112 0.179134 ACCTATGCGACGCTGAGAAC 60.179 55.000 22.08 0.00 0.00 3.01
1062 1113 1.202973 CCTATGCGACGCTGAGAACG 61.203 60.000 22.08 2.16 0.00 3.95
1063 1114 1.802300 CTATGCGACGCTGAGAACGC 61.802 60.000 22.08 16.14 43.98 4.84
1067 1118 4.415332 GACGCTGAGAACGCCGGA 62.415 66.667 5.05 0.00 0.00 5.14
1094 1152 1.675641 GACGACCTGCCATTTGCCT 60.676 57.895 0.00 0.00 40.16 4.75
1238 1296 4.250305 AGCACAACCTCCGCCGTT 62.250 61.111 0.00 0.00 0.00 4.44
1291 1352 2.196997 TTTCCATCCCTGACGGCCTG 62.197 60.000 0.00 0.00 0.00 4.85
1376 1437 2.954684 TACCGTGCCCTGCTCTTGG 61.955 63.158 0.00 0.00 0.00 3.61
1537 1604 0.108186 TGTCTATGCCCAAGCTCGTG 60.108 55.000 0.00 0.00 40.80 4.35
2383 2460 0.111061 AGTTGAGGCTGGATGTTGCA 59.889 50.000 0.00 0.00 0.00 4.08
2533 2629 6.890268 ACATCTCAGTACTACCAGACACATAA 59.110 38.462 0.00 0.00 0.00 1.90
2688 2831 7.607991 TCTTATTCTTTCCATGAACCTTCTCAC 59.392 37.037 0.00 0.00 0.00 3.51
2737 2880 6.923928 AAAATATTGCCCCATTGATTTTCG 57.076 33.333 0.00 0.00 0.00 3.46
2739 2882 5.867903 ATATTGCCCCATTGATTTTCGAA 57.132 34.783 0.00 0.00 0.00 3.71
2740 2883 4.758773 ATTGCCCCATTGATTTTCGAAT 57.241 36.364 0.00 0.00 0.00 3.34
2761 2904 1.125633 GCAGGGGAATCATGGCAAAT 58.874 50.000 0.00 0.00 0.00 2.32
2762 2905 1.487558 GCAGGGGAATCATGGCAAATT 59.512 47.619 0.00 0.00 0.00 1.82
2785 2928 5.138125 AGAATTGCAAACAGGTAACATGG 57.862 39.130 1.71 0.00 41.41 3.66
2851 2994 5.712152 ACTGCAAAAGCTAAAGCATAAGT 57.288 34.783 4.54 0.86 45.16 2.24
2976 3130 6.765403 TCGAAGGAAGTAGGAAATTTTCTCA 58.235 36.000 1.07 0.00 0.00 3.27
3000 3154 8.671028 TCAAGATGATTATATCAATTGATGCCG 58.329 33.333 27.59 6.02 43.50 5.69
3019 3173 4.520874 TGCCGTTTTAGAATGTTGGATTCA 59.479 37.500 0.00 0.00 0.00 2.57
3082 3236 3.050619 GGTTATGAAGATGCTACGGTCG 58.949 50.000 0.00 0.00 0.00 4.79
3102 3256 4.444720 GTCGAGAGCAATAATAAGGAACGG 59.555 45.833 0.00 0.00 0.00 4.44
3104 3258 5.010719 TCGAGAGCAATAATAAGGAACGGAT 59.989 40.000 0.00 0.00 0.00 4.18
3452 3606 4.876701 AACGATGCATACGGCCAT 57.123 50.000 18.34 0.00 43.89 4.40
3453 3607 2.616969 AACGATGCATACGGCCATC 58.383 52.632 18.34 0.00 43.89 3.51
3454 3608 0.106708 AACGATGCATACGGCCATCT 59.893 50.000 18.34 0.00 43.89 2.90
3455 3609 0.106708 ACGATGCATACGGCCATCTT 59.893 50.000 18.34 0.00 43.89 2.40
3456 3610 1.343142 ACGATGCATACGGCCATCTTA 59.657 47.619 18.34 0.00 43.89 2.10
3457 3611 2.028112 ACGATGCATACGGCCATCTTAT 60.028 45.455 18.34 0.00 43.89 1.73
3458 3612 3.002791 CGATGCATACGGCCATCTTATT 58.997 45.455 2.24 0.00 43.89 1.40
3459 3613 4.180817 CGATGCATACGGCCATCTTATTA 58.819 43.478 2.24 0.00 43.89 0.98
3460 3614 4.629634 CGATGCATACGGCCATCTTATTAA 59.370 41.667 2.24 0.00 43.89 1.40
3461 3615 5.121611 CGATGCATACGGCCATCTTATTAAA 59.878 40.000 2.24 0.00 43.89 1.52
3462 3616 6.348132 CGATGCATACGGCCATCTTATTAAAA 60.348 38.462 2.24 0.00 43.89 1.52
3463 3617 6.701145 TGCATACGGCCATCTTATTAAAAA 57.299 33.333 2.24 0.00 43.89 1.94
3488 3642 7.881775 AAAGGTTGTAACAAGATCTCAAAGT 57.118 32.000 0.00 0.00 0.00 2.66
3489 3643 7.497925 AAGGTTGTAACAAGATCTCAAAGTC 57.502 36.000 0.00 0.00 0.00 3.01
3490 3644 6.831976 AGGTTGTAACAAGATCTCAAAGTCT 58.168 36.000 0.00 0.00 0.00 3.24
3491 3645 6.931840 AGGTTGTAACAAGATCTCAAAGTCTC 59.068 38.462 0.00 0.00 0.00 3.36
3492 3646 6.147985 GGTTGTAACAAGATCTCAAAGTCTCC 59.852 42.308 0.00 0.00 0.00 3.71
3493 3647 6.419484 TGTAACAAGATCTCAAAGTCTCCA 57.581 37.500 0.00 0.00 0.00 3.86
3494 3648 6.826668 TGTAACAAGATCTCAAAGTCTCCAA 58.173 36.000 0.00 0.00 0.00 3.53
3495 3649 6.706270 TGTAACAAGATCTCAAAGTCTCCAAC 59.294 38.462 0.00 0.00 0.00 3.77
3496 3650 4.310769 ACAAGATCTCAAAGTCTCCAACG 58.689 43.478 0.00 0.00 0.00 4.10
3497 3651 3.601443 AGATCTCAAAGTCTCCAACGG 57.399 47.619 0.00 0.00 0.00 4.44
3498 3652 3.165875 AGATCTCAAAGTCTCCAACGGA 58.834 45.455 0.00 0.00 0.00 4.69
3499 3653 3.578716 AGATCTCAAAGTCTCCAACGGAA 59.421 43.478 0.00 0.00 0.00 4.30
3500 3654 3.830744 TCTCAAAGTCTCCAACGGAAA 57.169 42.857 0.00 0.00 0.00 3.13
3501 3655 3.463944 TCTCAAAGTCTCCAACGGAAAC 58.536 45.455 0.00 0.00 0.00 2.78
3502 3656 3.118555 TCTCAAAGTCTCCAACGGAAACA 60.119 43.478 0.00 0.00 0.00 2.83
3503 3657 3.611970 TCAAAGTCTCCAACGGAAACAA 58.388 40.909 0.00 0.00 0.00 2.83
3504 3658 4.011023 TCAAAGTCTCCAACGGAAACAAA 58.989 39.130 0.00 0.00 0.00 2.83
3505 3659 4.459685 TCAAAGTCTCCAACGGAAACAAAA 59.540 37.500 0.00 0.00 0.00 2.44
3506 3660 4.632538 AAGTCTCCAACGGAAACAAAAG 57.367 40.909 0.00 0.00 0.00 2.27
3507 3661 2.357952 AGTCTCCAACGGAAACAAAAGC 59.642 45.455 0.00 0.00 0.00 3.51
3508 3662 2.357952 GTCTCCAACGGAAACAAAAGCT 59.642 45.455 0.00 0.00 0.00 3.74
3509 3663 2.616842 TCTCCAACGGAAACAAAAGCTC 59.383 45.455 0.00 0.00 0.00 4.09
3510 3664 2.618709 CTCCAACGGAAACAAAAGCTCT 59.381 45.455 0.00 0.00 0.00 4.09
3511 3665 3.020984 TCCAACGGAAACAAAAGCTCTT 58.979 40.909 0.00 0.00 0.00 2.85
3512 3666 3.445805 TCCAACGGAAACAAAAGCTCTTT 59.554 39.130 0.00 0.00 0.00 2.52
3513 3667 3.796717 CCAACGGAAACAAAAGCTCTTTC 59.203 43.478 0.00 0.00 31.45 2.62
3514 3668 4.420168 CAACGGAAACAAAAGCTCTTTCA 58.580 39.130 0.00 0.00 31.45 2.69
3515 3669 4.292977 ACGGAAACAAAAGCTCTTTCAG 57.707 40.909 0.00 0.00 31.45 3.02
3516 3670 3.945285 ACGGAAACAAAAGCTCTTTCAGA 59.055 39.130 10.86 0.00 31.45 3.27
3517 3671 4.035675 ACGGAAACAAAAGCTCTTTCAGAG 59.964 41.667 10.86 0.00 45.04 3.35
3530 3684 6.542574 CTCTTTCAGAGCCAAATATGCTAG 57.457 41.667 0.00 0.00 39.69 3.42
3531 3685 6.239217 TCTTTCAGAGCCAAATATGCTAGA 57.761 37.500 0.00 0.00 39.69 2.43
3532 3686 6.653020 TCTTTCAGAGCCAAATATGCTAGAA 58.347 36.000 0.00 0.00 39.69 2.10
3533 3687 7.112122 TCTTTCAGAGCCAAATATGCTAGAAA 58.888 34.615 0.00 10.13 39.69 2.52
3534 3688 7.611467 TCTTTCAGAGCCAAATATGCTAGAAAA 59.389 33.333 0.00 1.84 39.91 2.29
3535 3689 7.701539 TTCAGAGCCAAATATGCTAGAAAAA 57.298 32.000 0.00 0.00 39.69 1.94
3555 3709 4.400529 AAACAAACTAGCCAAAACAGGG 57.599 40.909 0.00 0.00 0.00 4.45
3556 3710 3.306472 ACAAACTAGCCAAAACAGGGA 57.694 42.857 0.00 0.00 0.00 4.20
3557 3711 3.844640 ACAAACTAGCCAAAACAGGGAT 58.155 40.909 0.00 0.00 0.00 3.85
3558 3712 3.573967 ACAAACTAGCCAAAACAGGGATG 59.426 43.478 0.00 0.00 0.00 3.51
3559 3713 1.839424 ACTAGCCAAAACAGGGATGC 58.161 50.000 0.00 0.00 0.00 3.91
3560 3714 1.106285 CTAGCCAAAACAGGGATGCC 58.894 55.000 0.00 0.00 0.00 4.40
3561 3715 0.407528 TAGCCAAAACAGGGATGCCA 59.592 50.000 5.86 0.00 0.00 4.92
3562 3716 1.187567 AGCCAAAACAGGGATGCCAC 61.188 55.000 5.86 0.00 0.00 5.01
3563 3717 1.586028 CCAAAACAGGGATGCCACG 59.414 57.895 5.86 0.00 0.00 4.94
3564 3718 0.893270 CCAAAACAGGGATGCCACGA 60.893 55.000 5.86 0.00 0.00 4.35
3565 3719 0.240945 CAAAACAGGGATGCCACGAC 59.759 55.000 5.86 0.00 0.00 4.34
3566 3720 0.893727 AAAACAGGGATGCCACGACC 60.894 55.000 5.86 0.00 0.00 4.79
3567 3721 3.605749 AACAGGGATGCCACGACCG 62.606 63.158 5.86 0.00 0.00 4.79
3568 3722 4.838152 CAGGGATGCCACGACCGG 62.838 72.222 5.86 0.00 0.00 5.28
3577 3731 4.745751 CACGACCGGCCGGCTAAA 62.746 66.667 43.58 0.00 39.32 1.85
3578 3732 4.446413 ACGACCGGCCGGCTAAAG 62.446 66.667 43.58 29.47 39.32 1.85
3580 3734 4.770874 GACCGGCCGGCTAAAGCA 62.771 66.667 43.58 0.00 44.36 3.91
3581 3735 4.338710 ACCGGCCGGCTAAAGCAA 62.339 61.111 43.58 0.00 44.36 3.91
3582 3736 3.508840 CCGGCCGGCTAAAGCAAG 61.509 66.667 34.96 3.26 44.36 4.01
3583 3737 2.435938 CGGCCGGCTAAAGCAAGA 60.436 61.111 28.56 0.00 44.36 3.02
3584 3738 1.819632 CGGCCGGCTAAAGCAAGAT 60.820 57.895 28.56 0.00 44.36 2.40
3585 3739 0.531974 CGGCCGGCTAAAGCAAGATA 60.532 55.000 28.56 0.00 44.36 1.98
3586 3740 1.230324 GGCCGGCTAAAGCAAGATAG 58.770 55.000 28.56 0.00 44.36 2.08
3587 3741 1.230324 GCCGGCTAAAGCAAGATAGG 58.770 55.000 22.15 0.00 44.36 2.57
3588 3742 1.475213 GCCGGCTAAAGCAAGATAGGT 60.475 52.381 22.15 0.00 44.36 3.08
3589 3743 2.224209 GCCGGCTAAAGCAAGATAGGTA 60.224 50.000 22.15 0.00 44.36 3.08
3590 3744 3.743269 GCCGGCTAAAGCAAGATAGGTAA 60.743 47.826 22.15 0.00 44.36 2.85
3591 3745 4.448210 CCGGCTAAAGCAAGATAGGTAAA 58.552 43.478 4.07 0.00 44.36 2.01
3592 3746 4.272748 CCGGCTAAAGCAAGATAGGTAAAC 59.727 45.833 4.07 0.00 44.36 2.01
3593 3747 5.116882 CGGCTAAAGCAAGATAGGTAAACT 58.883 41.667 4.07 0.00 44.36 2.66
3594 3748 6.278363 CGGCTAAAGCAAGATAGGTAAACTA 58.722 40.000 4.07 0.00 44.36 2.24
3595 3749 6.759827 CGGCTAAAGCAAGATAGGTAAACTAA 59.240 38.462 4.07 0.00 44.36 2.24
3596 3750 7.441458 CGGCTAAAGCAAGATAGGTAAACTAAT 59.559 37.037 4.07 0.00 44.36 1.73
3597 3751 9.121658 GGCTAAAGCAAGATAGGTAAACTAATT 57.878 33.333 4.07 0.00 44.36 1.40
3598 3752 9.937175 GCTAAAGCAAGATAGGTAAACTAATTG 57.063 33.333 0.00 0.00 41.59 2.32
3601 3755 9.740710 AAAGCAAGATAGGTAAACTAATTGTCT 57.259 29.630 0.00 0.00 36.00 3.41
3618 3772 9.574458 CTAATTGTCTATCCTATTACATGACCG 57.426 37.037 0.00 0.00 0.00 4.79
3619 3773 5.386958 TGTCTATCCTATTACATGACCGC 57.613 43.478 0.00 0.00 0.00 5.68
3620 3774 4.219944 TGTCTATCCTATTACATGACCGCC 59.780 45.833 0.00 0.00 0.00 6.13
3621 3775 4.219944 GTCTATCCTATTACATGACCGCCA 59.780 45.833 0.00 0.00 0.00 5.69
3622 3776 5.023452 TCTATCCTATTACATGACCGCCAT 58.977 41.667 0.00 0.00 35.44 4.40
3623 3777 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
3624 3778 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
3625 3779 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
3626 3780 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
3627 3781 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
3628 3782 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
3629 3783 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
3630 3784 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
3631 3785 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
3633 3787 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
3634 3788 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
3635 3789 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
3636 3790 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
3637 3791 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
3638 3792 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
3639 3793 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
3640 3794 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
3641 3795 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
3642 3796 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
3643 3797 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
3644 3798 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
3645 3799 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
3646 3800 1.784358 ACCGGTTGAAGATATCCCGA 58.216 50.000 16.17 0.00 41.08 5.14
3647 3801 1.687123 ACCGGTTGAAGATATCCCGAG 59.313 52.381 16.17 10.10 41.08 4.63
3648 3802 1.605712 CCGGTTGAAGATATCCCGAGC 60.606 57.143 16.17 9.53 41.08 5.03
3649 3803 1.341531 CGGTTGAAGATATCCCGAGCT 59.658 52.381 10.76 0.00 41.08 4.09
3650 3804 2.557056 CGGTTGAAGATATCCCGAGCTA 59.443 50.000 10.76 0.00 41.08 3.32
3651 3805 3.612004 CGGTTGAAGATATCCCGAGCTAC 60.612 52.174 10.76 0.00 41.08 3.58
3652 3806 3.306156 GGTTGAAGATATCCCGAGCTACC 60.306 52.174 0.00 0.00 0.00 3.18
3653 3807 3.238788 TGAAGATATCCCGAGCTACCA 57.761 47.619 0.00 0.00 0.00 3.25
3654 3808 3.779444 TGAAGATATCCCGAGCTACCAT 58.221 45.455 0.00 0.00 0.00 3.55
3655 3809 3.764434 TGAAGATATCCCGAGCTACCATC 59.236 47.826 0.00 0.00 0.00 3.51
3656 3810 3.748645 AGATATCCCGAGCTACCATCT 57.251 47.619 0.00 0.00 0.00 2.90
3657 3811 3.626930 AGATATCCCGAGCTACCATCTC 58.373 50.000 0.00 0.00 0.00 2.75
3658 3812 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
3659 3813 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
3660 3814 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
3661 3815 1.467678 CCCGAGCTACCATCTCCCAG 61.468 65.000 0.00 0.00 0.00 4.45
3662 3816 1.365633 CGAGCTACCATCTCCCAGC 59.634 63.158 0.00 0.00 0.00 4.85
3663 3817 1.365633 GAGCTACCATCTCCCAGCG 59.634 63.158 0.00 0.00 39.04 5.18
3664 3818 2.093537 GAGCTACCATCTCCCAGCGG 62.094 65.000 0.00 0.00 39.04 5.52
3665 3819 2.134287 GCTACCATCTCCCAGCGGA 61.134 63.158 0.00 0.00 36.45 5.54
3666 3820 1.476007 GCTACCATCTCCCAGCGGAT 61.476 60.000 0.00 0.00 37.60 4.18
3667 3821 1.924731 CTACCATCTCCCAGCGGATA 58.075 55.000 0.00 0.00 37.60 2.59
3668 3822 1.821753 CTACCATCTCCCAGCGGATAG 59.178 57.143 0.00 0.00 37.60 2.08
3669 3823 0.188587 ACCATCTCCCAGCGGATAGA 59.811 55.000 0.00 0.37 37.60 1.98
3670 3824 0.605589 CCATCTCCCAGCGGATAGAC 59.394 60.000 0.00 0.00 37.60 2.59
3671 3825 0.605589 CATCTCCCAGCGGATAGACC 59.394 60.000 0.00 0.00 37.60 3.85
3672 3826 0.543174 ATCTCCCAGCGGATAGACCC 60.543 60.000 0.00 0.00 37.60 4.46
3673 3827 1.457643 CTCCCAGCGGATAGACCCA 60.458 63.158 0.00 0.00 37.60 4.51
3674 3828 1.457643 TCCCAGCGGATAGACCCAG 60.458 63.158 0.00 0.00 31.13 4.45
3675 3829 1.762460 CCCAGCGGATAGACCCAGT 60.762 63.158 0.00 0.00 34.64 4.00
3676 3830 0.469331 CCCAGCGGATAGACCCAGTA 60.469 60.000 0.00 0.00 34.64 2.74
3677 3831 1.410004 CCAGCGGATAGACCCAGTAA 58.590 55.000 0.00 0.00 34.64 2.24
3678 3832 1.068741 CCAGCGGATAGACCCAGTAAC 59.931 57.143 0.00 0.00 34.64 2.50
3679 3833 1.068741 CAGCGGATAGACCCAGTAACC 59.931 57.143 0.00 0.00 34.64 2.85
3680 3834 1.117150 GCGGATAGACCCAGTAACCA 58.883 55.000 0.00 0.00 34.64 3.67
3681 3835 1.483415 GCGGATAGACCCAGTAACCAA 59.517 52.381 0.00 0.00 34.64 3.67
3682 3836 2.093341 GCGGATAGACCCAGTAACCAAA 60.093 50.000 0.00 0.00 34.64 3.28
3683 3837 3.433173 GCGGATAGACCCAGTAACCAAAT 60.433 47.826 0.00 0.00 34.64 2.32
3684 3838 4.127171 CGGATAGACCCAGTAACCAAATG 58.873 47.826 0.00 0.00 34.64 2.32
3685 3839 3.883489 GGATAGACCCAGTAACCAAATGC 59.117 47.826 0.00 0.00 0.00 3.56
3686 3840 4.385310 GGATAGACCCAGTAACCAAATGCT 60.385 45.833 0.00 0.00 0.00 3.79
3687 3841 3.073274 AGACCCAGTAACCAAATGCTC 57.927 47.619 0.00 0.00 0.00 4.26
3688 3842 2.092323 GACCCAGTAACCAAATGCTCC 58.908 52.381 0.00 0.00 0.00 4.70
3689 3843 1.272480 ACCCAGTAACCAAATGCTCCC 60.272 52.381 0.00 0.00 0.00 4.30
3690 3844 1.005924 CCCAGTAACCAAATGCTCCCT 59.994 52.381 0.00 0.00 0.00 4.20
3691 3845 2.094675 CCAGTAACCAAATGCTCCCTG 58.905 52.381 0.00 0.00 0.00 4.45
3692 3846 2.094675 CAGTAACCAAATGCTCCCTGG 58.905 52.381 0.00 0.00 36.24 4.45
3693 3847 0.817654 GTAACCAAATGCTCCCTGGC 59.182 55.000 0.00 0.00 33.19 4.85
3694 3848 0.324275 TAACCAAATGCTCCCTGGCC 60.324 55.000 0.00 0.00 33.19 5.36
3695 3849 2.097978 AACCAAATGCTCCCTGGCCT 62.098 55.000 3.32 0.00 33.19 5.19
3696 3850 1.755783 CCAAATGCTCCCTGGCCTC 60.756 63.158 3.32 0.00 0.00 4.70
3697 3851 1.755783 CAAATGCTCCCTGGCCTCC 60.756 63.158 3.32 0.00 0.00 4.30
3698 3852 2.240918 AAATGCTCCCTGGCCTCCA 61.241 57.895 3.32 0.00 0.00 3.86
3699 3853 1.587522 AAATGCTCCCTGGCCTCCAT 61.588 55.000 3.32 0.00 30.82 3.41
3700 3854 2.004408 AATGCTCCCTGGCCTCCATC 62.004 60.000 3.32 0.00 30.82 3.51
3701 3855 4.247380 GCTCCCTGGCCTCCATCG 62.247 72.222 3.32 0.00 30.82 3.84
3702 3856 3.554342 CTCCCTGGCCTCCATCGG 61.554 72.222 3.32 0.00 30.82 4.18
3703 3857 4.088351 TCCCTGGCCTCCATCGGA 62.088 66.667 3.32 0.00 31.87 4.55
3713 3867 0.309302 CTCCATCGGAGTGAGTAGCG 59.691 60.000 1.64 0.00 44.25 4.26
3714 3868 1.299468 CCATCGGAGTGAGTAGCGC 60.299 63.158 0.00 0.00 0.00 5.92
3715 3869 1.299468 CATCGGAGTGAGTAGCGCC 60.299 63.158 2.29 0.00 0.00 6.53
3716 3870 2.491022 ATCGGAGTGAGTAGCGCCC 61.491 63.158 2.29 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.359475 GTACTCTGGTCGGCCGATC 59.641 63.158 33.58 32.57 37.67 3.69
1 2 2.125961 GGTACTCTGGTCGGCCGAT 61.126 63.158 33.58 17.08 37.67 4.18
2 3 2.753043 GGTACTCTGGTCGGCCGA 60.753 66.667 27.28 27.28 37.67 5.54
3 4 3.066190 TGGTACTCTGGTCGGCCG 61.066 66.667 22.12 22.12 37.67 6.13
4 5 1.542187 AAGTGGTACTCTGGTCGGCC 61.542 60.000 0.00 0.00 30.14 6.13
13 14 3.323979 TCCAGGAAGTTCAAGTGGTACTC 59.676 47.826 14.53 0.00 0.00 2.59
17 18 2.408565 TCTCCAGGAAGTTCAAGTGGT 58.591 47.619 14.53 0.00 0.00 4.16
56 57 0.179134 GTCCAGACCGATGAACTCCG 60.179 60.000 0.00 0.00 0.00 4.63
71 72 1.374125 CGGTTGAGCGTGATGTCCA 60.374 57.895 0.00 0.00 0.00 4.02
72 73 1.352156 GACGGTTGAGCGTGATGTCC 61.352 60.000 13.30 0.00 0.00 4.02
79 80 1.006102 CTCCTTGACGGTTGAGCGT 60.006 57.895 8.06 8.06 0.00 5.07
80 81 0.319555 TTCTCCTTGACGGTTGAGCG 60.320 55.000 0.52 0.52 0.00 5.03
84 85 1.792949 CGTTCTTCTCCTTGACGGTTG 59.207 52.381 0.00 0.00 0.00 3.77
103 106 5.281727 TGATCAAGAATAATCCGTGTCTCG 58.718 41.667 0.00 0.00 39.52 4.04
104 107 6.199908 CACTGATCAAGAATAATCCGTGTCTC 59.800 42.308 0.00 0.00 34.40 3.36
114 117 6.014242 ACCAGAGTCACACTGATCAAGAATAA 60.014 38.462 3.44 0.00 37.54 1.40
115 118 5.481824 ACCAGAGTCACACTGATCAAGAATA 59.518 40.000 3.44 0.00 37.54 1.75
116 119 4.285517 ACCAGAGTCACACTGATCAAGAAT 59.714 41.667 3.44 0.00 37.54 2.40
123 126 0.891373 CCGACCAGAGTCACACTGAT 59.109 55.000 3.44 0.00 43.73 2.90
125 128 1.373497 GCCGACCAGAGTCACACTG 60.373 63.158 0.00 0.00 43.73 3.66
144 147 2.588877 CCGTCACGGCATCATCCC 60.589 66.667 1.50 0.00 41.17 3.85
155 158 2.954753 CTGCAAACCTCGCCGTCAC 61.955 63.158 0.00 0.00 0.00 3.67
172 175 1.021390 CGAGGTGCAGATTTTCCGCT 61.021 55.000 0.00 0.00 0.00 5.52
196 199 3.121944 GCACATAGAACTCATATTCCGCG 59.878 47.826 0.00 0.00 0.00 6.46
205 208 0.894835 TCCGCTGCACATAGAACTCA 59.105 50.000 0.00 0.00 0.00 3.41
216 219 1.825090 ATTCATCTTGTTCCGCTGCA 58.175 45.000 0.00 0.00 0.00 4.41
218 221 4.191544 TCCTTATTCATCTTGTTCCGCTG 58.808 43.478 0.00 0.00 0.00 5.18
219 222 4.446371 CTCCTTATTCATCTTGTTCCGCT 58.554 43.478 0.00 0.00 0.00 5.52
230 233 4.635473 TCCTCCTTCACCTCCTTATTCAT 58.365 43.478 0.00 0.00 0.00 2.57
231 234 4.033709 CTCCTCCTTCACCTCCTTATTCA 58.966 47.826 0.00 0.00 0.00 2.57
235 238 2.008400 TCCTCCTCCTTCACCTCCTTA 58.992 52.381 0.00 0.00 0.00 2.69
241 244 0.252284 TGTCCTCCTCCTCCTTCACC 60.252 60.000 0.00 0.00 0.00 4.02
242 245 1.552792 CTTGTCCTCCTCCTCCTTCAC 59.447 57.143 0.00 0.00 0.00 3.18
243 246 1.553417 CCTTGTCCTCCTCCTCCTTCA 60.553 57.143 0.00 0.00 0.00 3.02
246 249 1.306568 GCCTTGTCCTCCTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
276 279 1.485124 ACTATCCAGCACGACCATCA 58.515 50.000 0.00 0.00 0.00 3.07
278 281 2.632377 CAAACTATCCAGCACGACCAT 58.368 47.619 0.00 0.00 0.00 3.55
289 292 6.621613 GTTCTTCACCAATTCCAAACTATCC 58.378 40.000 0.00 0.00 0.00 2.59
301 304 2.080286 CGTCCTCGTTCTTCACCAAT 57.920 50.000 0.00 0.00 0.00 3.16
321 324 1.982395 AGTCGATGTCGGAGCCCAA 60.982 57.895 2.25 0.00 40.29 4.12
322 325 2.362503 AGTCGATGTCGGAGCCCA 60.363 61.111 2.25 0.00 40.29 5.36
352 361 8.531982 ACTAAAACTACTGCAGAATACTCATCA 58.468 33.333 23.35 0.00 0.00 3.07
425 438 9.661563 TGATACAAACTAAAACATAGTTCCGAT 57.338 29.630 1.68 0.00 36.82 4.18
426 439 9.491675 TTGATACAAACTAAAACATAGTTCCGA 57.508 29.630 1.68 0.00 36.82 4.55
453 467 6.696441 ACATTGCAAATTTCAAACATGGTT 57.304 29.167 1.71 0.00 0.00 3.67
507 521 2.289569 GGGCATCATTTTGCTCCAACAA 60.290 45.455 0.00 0.00 42.38 2.83
542 556 4.044336 TCAAACATGTTTGCTCCAACAG 57.956 40.909 35.90 16.92 46.92 3.16
565 579 5.988310 TCAAAGAGTGGATTTTGCATCAT 57.012 34.783 0.00 0.00 34.96 2.45
605 619 4.279671 CAGGTAAGTATTTTGGGCACACAA 59.720 41.667 0.00 0.00 0.00 3.33
629 644 9.954191 GGTTCATCACCATAAGAGCATCTCCAA 62.954 44.444 0.00 0.00 46.39 3.53
665 680 7.835682 TCTTCTGGTCCATCATCATTATTGTTT 59.164 33.333 0.00 0.00 0.00 2.83
669 684 7.664731 GTCATCTTCTGGTCCATCATCATTATT 59.335 37.037 0.00 0.00 0.00 1.40
864 879 1.202313 CGCCCAAAAGACCGAAACAAA 60.202 47.619 0.00 0.00 0.00 2.83
882 897 6.860023 CCAATGGATCTCTGATTTTATTTCGC 59.140 38.462 0.00 0.00 0.00 4.70
883 898 8.158169 TCCAATGGATCTCTGATTTTATTTCG 57.842 34.615 0.00 0.00 0.00 3.46
901 916 5.835113 ACCGAAATACTGAAATCCAATGG 57.165 39.130 0.00 0.00 0.00 3.16
904 919 5.878116 CCTGTACCGAAATACTGAAATCCAA 59.122 40.000 0.00 0.00 0.00 3.53
948 963 9.936759 TGTATTTTTACCATGGAAAGAAAATCC 57.063 29.630 21.47 14.50 37.48 3.01
955 970 9.337091 CGTTAACTGTATTTTTACCATGGAAAG 57.663 33.333 21.47 0.21 0.00 2.62
996 1045 1.071041 GTCGCTGTTCGTTGGTTGTAC 60.071 52.381 0.00 0.00 39.67 2.90
1003 1052 1.006825 TCGGATGTCGCTGTTCGTTG 61.007 55.000 0.00 0.00 39.67 4.10
1022 1073 3.313526 GGTGATCTCAAATAGCATGCGTT 59.686 43.478 13.01 8.83 0.00 4.84
1035 1086 0.030773 GCGTCGCATAGGTGATCTCA 59.969 55.000 13.44 0.00 35.69 3.27
1051 1102 4.421479 CTCCGGCGTTCTCAGCGT 62.421 66.667 6.01 0.00 35.00 5.07
1063 1114 3.744719 TCGTCCAACTCGCTCCGG 61.745 66.667 0.00 0.00 0.00 5.14
1065 1116 2.126031 GGTCGTCCAACTCGCTCC 60.126 66.667 0.00 0.00 0.00 4.70
1066 1117 1.444553 CAGGTCGTCCAACTCGCTC 60.445 63.158 0.51 0.00 35.89 5.03
1067 1118 2.651361 CAGGTCGTCCAACTCGCT 59.349 61.111 0.51 0.00 35.89 4.93
1094 1152 2.202919 CGCGGCATCCATCACTGA 60.203 61.111 0.00 0.00 0.00 3.41
1190 1248 2.047274 CGTGACTTGGATGCCGGT 60.047 61.111 1.90 0.00 0.00 5.28
1196 1254 1.002087 GTGGAGGAACGTGACTTGGAT 59.998 52.381 0.00 0.00 0.00 3.41
1376 1437 4.810661 AGCGGCAGAGAGAAGCGC 62.811 66.667 0.00 0.00 0.00 5.92
1546 1613 4.097361 GCGGTGAAGGGGGTCTCC 62.097 72.222 0.00 0.00 0.00 3.71
2429 2506 2.183046 GACGCTGAGCTCCCTGAC 59.817 66.667 12.15 0.00 0.00 3.51
2688 2831 4.573607 TCTTGATCATTGCTTTCAGATCCG 59.426 41.667 0.00 0.00 36.84 4.18
2737 2880 1.242076 CCATGATTCCCCTGCGATTC 58.758 55.000 0.00 0.00 0.00 2.52
2739 2882 1.228367 GCCATGATTCCCCTGCGAT 60.228 57.895 0.00 0.00 0.00 4.58
2740 2883 2.192979 GCCATGATTCCCCTGCGA 59.807 61.111 0.00 0.00 0.00 5.10
2761 2904 6.266558 ACCATGTTACCTGTTTGCAATTCTAA 59.733 34.615 0.00 0.00 0.00 2.10
2762 2905 5.772672 ACCATGTTACCTGTTTGCAATTCTA 59.227 36.000 0.00 0.00 0.00 2.10
2785 2928 6.446318 TGTATGAATGCAACTTGAAGGAAAC 58.554 36.000 0.00 0.00 0.00 2.78
2851 2994 6.013898 TCCTTTTGATGCCATGTTTATTTGGA 60.014 34.615 0.00 0.00 34.81 3.53
2944 3098 9.907229 AATTTCCTACTTCCTTCGAGAAATATT 57.093 29.630 4.54 0.00 32.79 1.28
2976 3130 8.571461 ACGGCATCAATTGATATAATCATCTT 57.429 30.769 20.32 0.00 39.39 2.40
3019 3173 5.510520 GGCTGCTGCATAGATAGACTTAACT 60.511 44.000 17.89 0.00 41.91 2.24
3082 3236 5.409826 CCATCCGTTCCTTATTATTGCTCTC 59.590 44.000 0.00 0.00 0.00 3.20
3435 3589 0.106708 AGATGGCCGTATGCATCGTT 59.893 50.000 0.19 0.00 43.89 3.85
3436 3590 0.106708 AAGATGGCCGTATGCATCGT 59.893 50.000 0.19 0.00 43.89 3.73
3437 3591 2.078849 TAAGATGGCCGTATGCATCG 57.921 50.000 0.19 7.03 43.89 3.84
3438 3592 6.494893 TTTAATAAGATGGCCGTATGCATC 57.505 37.500 0.19 0.00 43.89 3.91
3439 3593 6.892658 TTTTAATAAGATGGCCGTATGCAT 57.107 33.333 3.79 3.79 43.89 3.96
3440 3594 6.701145 TTTTTAATAAGATGGCCGTATGCA 57.299 33.333 0.00 0.00 43.89 3.96
3462 3616 8.749354 ACTTTGAGATCTTGTTACAACCTTTTT 58.251 29.630 0.00 0.00 0.00 1.94
3463 3617 8.293699 ACTTTGAGATCTTGTTACAACCTTTT 57.706 30.769 0.00 0.00 0.00 2.27
3464 3618 7.775561 AGACTTTGAGATCTTGTTACAACCTTT 59.224 33.333 0.00 0.00 0.00 3.11
3465 3619 7.283329 AGACTTTGAGATCTTGTTACAACCTT 58.717 34.615 0.00 0.00 0.00 3.50
3466 3620 6.831976 AGACTTTGAGATCTTGTTACAACCT 58.168 36.000 0.00 0.00 0.00 3.50
3467 3621 6.147985 GGAGACTTTGAGATCTTGTTACAACC 59.852 42.308 0.00 0.00 0.00 3.77
3468 3622 6.706270 TGGAGACTTTGAGATCTTGTTACAAC 59.294 38.462 0.00 0.00 0.00 3.32
3469 3623 6.826668 TGGAGACTTTGAGATCTTGTTACAA 58.173 36.000 0.00 0.00 0.00 2.41
3470 3624 6.419484 TGGAGACTTTGAGATCTTGTTACA 57.581 37.500 0.00 0.00 0.00 2.41
3471 3625 6.128795 CGTTGGAGACTTTGAGATCTTGTTAC 60.129 42.308 0.00 0.00 0.00 2.50
3472 3626 5.926542 CGTTGGAGACTTTGAGATCTTGTTA 59.073 40.000 0.00 0.00 0.00 2.41
3473 3627 4.752101 CGTTGGAGACTTTGAGATCTTGTT 59.248 41.667 0.00 0.00 0.00 2.83
3474 3628 4.310769 CGTTGGAGACTTTGAGATCTTGT 58.689 43.478 0.00 0.00 0.00 3.16
3475 3629 3.681897 CCGTTGGAGACTTTGAGATCTTG 59.318 47.826 0.00 0.00 0.00 3.02
3476 3630 3.578716 TCCGTTGGAGACTTTGAGATCTT 59.421 43.478 0.00 0.00 0.00 2.40
3477 3631 3.165875 TCCGTTGGAGACTTTGAGATCT 58.834 45.455 0.00 0.00 0.00 2.75
3478 3632 3.594603 TCCGTTGGAGACTTTGAGATC 57.405 47.619 0.00 0.00 0.00 2.75
3479 3633 4.065789 GTTTCCGTTGGAGACTTTGAGAT 58.934 43.478 0.00 0.00 34.49 2.75
3480 3634 3.118555 TGTTTCCGTTGGAGACTTTGAGA 60.119 43.478 7.86 0.00 37.65 3.27
3481 3635 3.202906 TGTTTCCGTTGGAGACTTTGAG 58.797 45.455 7.86 0.00 37.65 3.02
3482 3636 3.269538 TGTTTCCGTTGGAGACTTTGA 57.730 42.857 7.86 0.00 37.65 2.69
3483 3637 4.364415 TTTGTTTCCGTTGGAGACTTTG 57.636 40.909 7.86 0.00 37.65 2.77
3484 3638 4.676986 GCTTTTGTTTCCGTTGGAGACTTT 60.677 41.667 7.86 0.00 37.65 2.66
3485 3639 3.181490 GCTTTTGTTTCCGTTGGAGACTT 60.181 43.478 7.86 0.00 37.65 3.01
3486 3640 2.357952 GCTTTTGTTTCCGTTGGAGACT 59.642 45.455 7.86 0.00 37.65 3.24
3487 3641 2.357952 AGCTTTTGTTTCCGTTGGAGAC 59.642 45.455 0.00 0.00 37.34 3.36
3488 3642 2.616842 GAGCTTTTGTTTCCGTTGGAGA 59.383 45.455 0.00 0.00 31.21 3.71
3489 3643 2.618709 AGAGCTTTTGTTTCCGTTGGAG 59.381 45.455 0.00 0.00 31.21 3.86
3490 3644 2.650322 AGAGCTTTTGTTTCCGTTGGA 58.350 42.857 0.00 0.00 0.00 3.53
3491 3645 3.436700 AAGAGCTTTTGTTTCCGTTGG 57.563 42.857 0.00 0.00 0.00 3.77
3492 3646 4.420168 TGAAAGAGCTTTTGTTTCCGTTG 58.580 39.130 0.00 0.00 38.06 4.10
3493 3647 4.398044 TCTGAAAGAGCTTTTGTTTCCGTT 59.602 37.500 0.00 0.00 38.67 4.44
3494 3648 3.945285 TCTGAAAGAGCTTTTGTTTCCGT 59.055 39.130 0.00 0.00 38.67 4.69
3495 3649 4.552166 TCTGAAAGAGCTTTTGTTTCCG 57.448 40.909 0.00 0.00 38.67 4.30
3508 3662 6.239217 TCTAGCATATTTGGCTCTGAAAGA 57.761 37.500 0.00 0.00 43.69 2.52
3509 3663 6.932356 TTCTAGCATATTTGGCTCTGAAAG 57.068 37.500 0.00 0.00 42.62 2.62
3510 3664 7.701539 TTTTCTAGCATATTTGGCTCTGAAA 57.298 32.000 0.00 0.00 42.62 2.69
3511 3665 7.701539 TTTTTCTAGCATATTTGGCTCTGAA 57.298 32.000 0.00 0.00 42.62 3.02
3532 3686 5.046231 TCCCTGTTTTGGCTAGTTTGTTTTT 60.046 36.000 0.00 0.00 0.00 1.94
3533 3687 4.468153 TCCCTGTTTTGGCTAGTTTGTTTT 59.532 37.500 0.00 0.00 0.00 2.43
3534 3688 4.027437 TCCCTGTTTTGGCTAGTTTGTTT 58.973 39.130 0.00 0.00 0.00 2.83
3535 3689 3.637769 TCCCTGTTTTGGCTAGTTTGTT 58.362 40.909 0.00 0.00 0.00 2.83
3536 3690 3.306472 TCCCTGTTTTGGCTAGTTTGT 57.694 42.857 0.00 0.00 0.00 2.83
3537 3691 3.614870 GCATCCCTGTTTTGGCTAGTTTG 60.615 47.826 0.00 0.00 0.00 2.93
3538 3692 2.562738 GCATCCCTGTTTTGGCTAGTTT 59.437 45.455 0.00 0.00 0.00 2.66
3539 3693 2.171003 GCATCCCTGTTTTGGCTAGTT 58.829 47.619 0.00 0.00 0.00 2.24
3540 3694 1.616994 GGCATCCCTGTTTTGGCTAGT 60.617 52.381 0.00 0.00 33.51 2.57
3541 3695 1.106285 GGCATCCCTGTTTTGGCTAG 58.894 55.000 0.00 0.00 33.51 3.42
3542 3696 0.407528 TGGCATCCCTGTTTTGGCTA 59.592 50.000 0.00 0.00 36.91 3.93
3543 3697 1.155859 TGGCATCCCTGTTTTGGCT 59.844 52.632 0.00 0.00 36.91 4.75
3544 3698 1.293179 GTGGCATCCCTGTTTTGGC 59.707 57.895 0.00 0.00 36.55 4.52
3545 3699 0.893270 TCGTGGCATCCCTGTTTTGG 60.893 55.000 0.00 0.00 0.00 3.28
3546 3700 0.240945 GTCGTGGCATCCCTGTTTTG 59.759 55.000 0.00 0.00 0.00 2.44
3547 3701 0.893727 GGTCGTGGCATCCCTGTTTT 60.894 55.000 0.00 0.00 0.00 2.43
3548 3702 1.303317 GGTCGTGGCATCCCTGTTT 60.303 57.895 0.00 0.00 0.00 2.83
3549 3703 2.351276 GGTCGTGGCATCCCTGTT 59.649 61.111 0.00 0.00 0.00 3.16
3550 3704 4.082523 CGGTCGTGGCATCCCTGT 62.083 66.667 0.00 0.00 0.00 4.00
3551 3705 4.838152 CCGGTCGTGGCATCCCTG 62.838 72.222 0.00 0.00 0.00 4.45
3560 3714 4.745751 TTTAGCCGGCCGGTCGTG 62.746 66.667 42.53 19.97 37.65 4.35
3561 3715 4.446413 CTTTAGCCGGCCGGTCGT 62.446 66.667 42.53 29.53 37.65 4.34
3563 3717 4.770874 TGCTTTAGCCGGCCGGTC 62.771 66.667 42.53 33.30 41.18 4.79
3564 3718 4.338710 TTGCTTTAGCCGGCCGGT 62.339 61.111 42.53 30.68 41.18 5.28
3565 3719 3.508840 CTTGCTTTAGCCGGCCGG 61.509 66.667 40.26 40.26 41.18 6.13
3566 3720 0.531974 TATCTTGCTTTAGCCGGCCG 60.532 55.000 26.15 21.04 41.18 6.13
3567 3721 1.230324 CTATCTTGCTTTAGCCGGCC 58.770 55.000 26.15 7.94 41.18 6.13
3568 3722 1.230324 CCTATCTTGCTTTAGCCGGC 58.770 55.000 21.89 21.89 41.18 6.13
3569 3723 2.622064 ACCTATCTTGCTTTAGCCGG 57.378 50.000 0.00 0.00 41.18 6.13
3570 3724 5.116882 AGTTTACCTATCTTGCTTTAGCCG 58.883 41.667 0.00 0.00 41.18 5.52
3571 3725 8.678593 ATTAGTTTACCTATCTTGCTTTAGCC 57.321 34.615 0.00 0.00 41.18 3.93
3572 3726 9.937175 CAATTAGTTTACCTATCTTGCTTTAGC 57.063 33.333 0.00 0.00 42.50 3.09
3575 3729 9.740710 AGACAATTAGTTTACCTATCTTGCTTT 57.259 29.630 0.00 0.00 0.00 3.51
3592 3746 9.574458 CGGTCATGTAATAGGATAGACAATTAG 57.426 37.037 0.00 0.00 0.00 1.73
3593 3747 8.033038 GCGGTCATGTAATAGGATAGACAATTA 58.967 37.037 0.00 0.00 0.00 1.40
3594 3748 6.874134 GCGGTCATGTAATAGGATAGACAATT 59.126 38.462 0.00 0.00 0.00 2.32
3595 3749 6.398918 GCGGTCATGTAATAGGATAGACAAT 58.601 40.000 0.00 0.00 0.00 2.71
3596 3750 5.279306 GGCGGTCATGTAATAGGATAGACAA 60.279 44.000 0.00 0.00 0.00 3.18
3597 3751 4.219944 GGCGGTCATGTAATAGGATAGACA 59.780 45.833 0.00 0.00 0.00 3.41
3598 3752 4.219944 TGGCGGTCATGTAATAGGATAGAC 59.780 45.833 0.00 0.00 0.00 2.59
3599 3753 4.412843 TGGCGGTCATGTAATAGGATAGA 58.587 43.478 0.00 0.00 0.00 1.98
3600 3754 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
3601 3755 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
3602 3756 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
3603 3757 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
3604 3758 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
3605 3759 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
3606 3760 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
3607 3761 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
3608 3762 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
3609 3763 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
3610 3764 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
3611 3765 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
3612 3766 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
3613 3767 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
3614 3768 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
3615 3769 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
3616 3770 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
3617 3771 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
3618 3772 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
3619 3773 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
3620 3774 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
3621 3775 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
3622 3776 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
3623 3777 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
3624 3778 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
3625 3779 2.502538 TCGGGATATCTTCAACCGGTTT 59.497 45.455 19.55 5.23 44.36 3.27
3626 3780 2.102588 CTCGGGATATCTTCAACCGGTT 59.897 50.000 15.86 15.86 44.36 4.44
3627 3781 1.687123 CTCGGGATATCTTCAACCGGT 59.313 52.381 0.00 0.00 44.36 5.28
3628 3782 1.605712 GCTCGGGATATCTTCAACCGG 60.606 57.143 14.77 0.00 44.36 5.28
3629 3783 1.341531 AGCTCGGGATATCTTCAACCG 59.658 52.381 10.16 10.16 45.52 4.44
3630 3784 3.306156 GGTAGCTCGGGATATCTTCAACC 60.306 52.174 2.05 0.00 0.00 3.77
3631 3785 3.321111 TGGTAGCTCGGGATATCTTCAAC 59.679 47.826 2.05 0.00 0.00 3.18
3632 3786 3.572642 TGGTAGCTCGGGATATCTTCAA 58.427 45.455 2.05 0.00 0.00 2.69
3633 3787 3.238788 TGGTAGCTCGGGATATCTTCA 57.761 47.619 2.05 0.00 0.00 3.02
3634 3788 4.020543 AGATGGTAGCTCGGGATATCTTC 58.979 47.826 2.05 0.00 0.00 2.87
3635 3789 4.020543 GAGATGGTAGCTCGGGATATCTT 58.979 47.826 2.05 0.00 0.00 2.40
3636 3790 3.626222 GGAGATGGTAGCTCGGGATATCT 60.626 52.174 2.05 0.00 33.19 1.98
3637 3791 2.691011 GGAGATGGTAGCTCGGGATATC 59.309 54.545 0.00 0.00 33.19 1.63
3638 3792 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
3639 3793 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
3640 3794 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
3641 3795 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
3642 3796 1.457643 TGGGAGATGGTAGCTCGGG 60.458 63.158 0.00 0.00 33.19 5.14
3643 3797 2.045280 CTGGGAGATGGTAGCTCGG 58.955 63.158 0.00 0.00 33.19 4.63
3644 3798 1.365633 GCTGGGAGATGGTAGCTCG 59.634 63.158 0.00 0.00 33.19 5.03
3645 3799 1.365633 CGCTGGGAGATGGTAGCTC 59.634 63.158 0.00 0.00 34.13 4.09
3646 3800 2.136878 CCGCTGGGAGATGGTAGCT 61.137 63.158 0.00 0.00 34.13 3.32
3647 3801 2.134287 TCCGCTGGGAGATGGTAGC 61.134 63.158 0.00 0.00 37.43 3.58
3648 3802 4.277552 TCCGCTGGGAGATGGTAG 57.722 61.111 0.00 0.00 37.43 3.18
3657 3811 0.469331 TACTGGGTCTATCCGCTGGG 60.469 60.000 0.00 0.00 37.00 4.45
3658 3812 1.068741 GTTACTGGGTCTATCCGCTGG 59.931 57.143 0.00 0.00 37.00 4.85
3659 3813 1.068741 GGTTACTGGGTCTATCCGCTG 59.931 57.143 0.00 0.00 37.00 5.18
3660 3814 1.342674 TGGTTACTGGGTCTATCCGCT 60.343 52.381 0.00 0.00 37.00 5.52
3661 3815 1.117150 TGGTTACTGGGTCTATCCGC 58.883 55.000 0.00 0.00 37.00 5.54
3662 3816 3.899052 TTTGGTTACTGGGTCTATCCG 57.101 47.619 0.00 0.00 37.00 4.18
3663 3817 3.883489 GCATTTGGTTACTGGGTCTATCC 59.117 47.826 0.00 0.00 0.00 2.59
3664 3818 4.781934 AGCATTTGGTTACTGGGTCTATC 58.218 43.478 0.00 0.00 0.00 2.08
3665 3819 4.385310 GGAGCATTTGGTTACTGGGTCTAT 60.385 45.833 0.00 0.00 0.00 1.98
3666 3820 3.054655 GGAGCATTTGGTTACTGGGTCTA 60.055 47.826 0.00 0.00 0.00 2.59
3667 3821 2.290960 GGAGCATTTGGTTACTGGGTCT 60.291 50.000 0.00 0.00 0.00 3.85
3668 3822 2.092323 GGAGCATTTGGTTACTGGGTC 58.908 52.381 0.00 0.00 0.00 4.46
3669 3823 1.272480 GGGAGCATTTGGTTACTGGGT 60.272 52.381 0.00 0.00 0.00 4.51
3670 3824 1.005924 AGGGAGCATTTGGTTACTGGG 59.994 52.381 0.00 0.00 0.00 4.45
3671 3825 2.094675 CAGGGAGCATTTGGTTACTGG 58.905 52.381 6.70 0.00 0.00 4.00
3672 3826 2.094675 CCAGGGAGCATTTGGTTACTG 58.905 52.381 7.32 7.32 32.88 2.74
3673 3827 1.616994 GCCAGGGAGCATTTGGTTACT 60.617 52.381 0.00 0.00 34.43 2.24
3674 3828 0.817654 GCCAGGGAGCATTTGGTTAC 59.182 55.000 0.00 0.00 34.43 2.50
3675 3829 0.324275 GGCCAGGGAGCATTTGGTTA 60.324 55.000 0.00 0.00 34.43 2.85
3676 3830 1.610379 GGCCAGGGAGCATTTGGTT 60.610 57.895 0.00 0.00 34.43 3.67
3677 3831 2.037847 GGCCAGGGAGCATTTGGT 59.962 61.111 0.00 0.00 34.43 3.67
3678 3832 1.755783 GAGGCCAGGGAGCATTTGG 60.756 63.158 5.01 0.00 35.06 3.28
3679 3833 1.755783 GGAGGCCAGGGAGCATTTG 60.756 63.158 5.01 0.00 0.00 2.32
3680 3834 1.587522 ATGGAGGCCAGGGAGCATTT 61.588 55.000 5.01 0.00 36.75 2.32
3681 3835 2.004408 GATGGAGGCCAGGGAGCATT 62.004 60.000 5.01 0.00 36.75 3.56
3682 3836 2.369291 ATGGAGGCCAGGGAGCAT 60.369 61.111 5.01 0.00 36.75 3.79
3683 3837 3.092511 GATGGAGGCCAGGGAGCA 61.093 66.667 5.01 0.00 36.75 4.26
3684 3838 4.247380 CGATGGAGGCCAGGGAGC 62.247 72.222 5.01 0.00 36.75 4.70
3685 3839 3.554342 CCGATGGAGGCCAGGGAG 61.554 72.222 5.01 0.00 36.75 4.30
3686 3840 4.088351 TCCGATGGAGGCCAGGGA 62.088 66.667 5.01 0.00 37.61 4.20
3687 3841 3.554342 CTCCGATGGAGGCCAGGG 61.554 72.222 5.01 0.00 45.43 4.45
3695 3849 1.725557 GCGCTACTCACTCCGATGGA 61.726 60.000 0.00 0.00 0.00 3.41
3696 3850 1.299468 GCGCTACTCACTCCGATGG 60.299 63.158 0.00 0.00 0.00 3.51
3697 3851 1.299468 GGCGCTACTCACTCCGATG 60.299 63.158 7.64 0.00 0.00 3.84
3698 3852 2.491022 GGGCGCTACTCACTCCGAT 61.491 63.158 7.64 0.00 0.00 4.18
3699 3853 3.138798 GGGCGCTACTCACTCCGA 61.139 66.667 7.64 0.00 0.00 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.