Multiple sequence alignment - TraesCS7A01G412400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G412400 chr7A 100.000 5128 0 0 1 5128 603290733 603295860 0.000000e+00 9470.0
1 TraesCS7A01G412400 chr7A 81.590 239 22 6 491 707 128148417 128148655 1.470000e-40 178.0
2 TraesCS7A01G412400 chr7A 80.342 234 25 5 494 706 88823798 88824031 1.910000e-34 158.0
3 TraesCS7A01G412400 chr7A 81.690 71 11 2 5039 5107 9145584 9145514 1.990000e-04 58.4
4 TraesCS7A01G412400 chr7D 95.488 1928 69 7 2377 4295 523046918 523048836 0.000000e+00 3062.0
5 TraesCS7A01G412400 chr7D 95.361 1660 57 13 707 2359 523045286 523046932 0.000000e+00 2621.0
6 TraesCS7A01G412400 chr7D 89.457 645 59 8 4488 5126 29766204 29765563 0.000000e+00 806.0
7 TraesCS7A01G412400 chr7D 90.351 456 41 3 1 455 523044828 523045281 3.420000e-166 595.0
8 TraesCS7A01G412400 chr7B 92.872 1922 121 10 2377 4295 557058837 557060745 0.000000e+00 2776.0
9 TraesCS7A01G412400 chr7B 92.999 1057 54 12 734 1783 557057180 557058223 0.000000e+00 1524.0
10 TraesCS7A01G412400 chr7B 87.797 590 45 11 1788 2359 557058271 557058851 0.000000e+00 665.0
11 TraesCS7A01G412400 chr5D 82.935 627 71 25 4290 4898 524730303 524730911 2.720000e-147 532.0
12 TraesCS7A01G412400 chr5D 85.151 431 34 15 1721 2129 551597942 551598364 1.030000e-111 414.0
13 TraesCS7A01G412400 chr5D 84.687 431 36 13 1721 2129 399569968 399570390 2.220000e-108 403.0
14 TraesCS7A01G412400 chr5D 84.687 431 35 14 1721 2129 87100070 87100491 8.000000e-108 401.0
15 TraesCS7A01G412400 chr5D 84.455 431 37 13 1721 2129 448744701 448744279 1.030000e-106 398.0
16 TraesCS7A01G412400 chr1D 85.548 429 33 12 1721 2129 264340603 264341022 6.140000e-114 422.0
17 TraesCS7A01G412400 chr1D 80.147 136 25 2 1 136 470344319 470344452 3.270000e-17 100.0
18 TraesCS7A01G412400 chr4D 84.919 431 35 13 1721 2129 255797130 255797552 4.780000e-110 409.0
19 TraesCS7A01G412400 chr3D 84.455 431 37 16 1721 2129 141517476 141517898 1.030000e-106 398.0
20 TraesCS7A01G412400 chr3D 82.734 139 18 5 1 137 176584797 176584663 9.020000e-23 119.0
21 TraesCS7A01G412400 chr4A 83.841 427 43 9 1721 2129 560894829 560894411 2.900000e-102 383.0
22 TraesCS7A01G412400 chr4A 83.404 235 18 3 494 707 567704838 567704604 1.130000e-46 198.0
23 TraesCS7A01G412400 chr4A 81.818 143 24 2 1 142 517418377 517418236 9.020000e-23 119.0
24 TraesCS7A01G412400 chr4A 76.374 182 38 4 7 185 680054015 680053836 5.470000e-15 93.5
25 TraesCS7A01G412400 chr3B 89.803 304 23 2 1705 2000 52422579 52422276 2.900000e-102 383.0
26 TraesCS7A01G412400 chr3A 83.726 424 43 9 1721 2126 6660088 6660503 1.350000e-100 377.0
27 TraesCS7A01G412400 chr3A 90.526 95 9 0 501 595 172756920 172756826 5.390000e-25 126.0
28 TraesCS7A01G412400 chr1A 83.082 331 40 5 1748 2067 107934555 107934230 2.340000e-73 287.0
29 TraesCS7A01G412400 chr1A 81.818 231 21 6 501 710 65567087 65567317 1.900000e-39 174.0
30 TraesCS7A01G412400 chr2B 82.596 339 37 8 1741 2070 725306344 725306669 3.910000e-71 279.0
31 TraesCS7A01G412400 chr2B 88.636 88 10 0 1 88 680763465 680763378 1.950000e-19 108.0
32 TraesCS7A01G412400 chr2A 83.830 235 17 3 494 707 214713782 214713548 2.420000e-48 204.0
33 TraesCS7A01G412400 chr2A 82.353 238 20 4 491 707 234108805 234109041 2.440000e-43 187.0
34 TraesCS7A01G412400 chr6A 82.979 235 20 2 494 708 235924809 235925043 1.460000e-45 195.0
35 TraesCS7A01G412400 chr6A 82.231 242 21 4 494 713 602721165 602720924 6.780000e-44 189.0
36 TraesCS7A01G412400 chr6A 82.128 235 21 6 494 707 461142984 461143218 1.130000e-41 182.0
37 TraesCS7A01G412400 chr6A 81.333 225 21 3 501 705 515068554 515068331 4.110000e-36 163.0
38 TraesCS7A01G412400 chr6A 78.814 236 29 9 511 726 583129887 583129653 6.920000e-29 139.0
39 TraesCS7A01G412400 chr6A 78.146 151 26 5 1 147 601381511 601381364 7.070000e-14 89.8
40 TraesCS7A01G412400 chr5A 82.158 241 21 4 494 712 656637038 656636798 2.440000e-43 187.0
41 TraesCS7A01G412400 chr5A 80.738 244 26 3 494 716 395696291 395696534 2.460000e-38 171.0
42 TraesCS7A01G412400 chr5A 80.597 201 19 2 501 681 462157334 462157134 2.490000e-28 137.0
43 TraesCS7A01G412400 chr5B 81.780 236 22 3 494 708 37501941 37502176 1.470000e-40 178.0
44 TraesCS7A01G412400 chr5B 95.161 62 3 0 1018 1079 658542614 658542675 1.180000e-16 99.0
45 TraesCS7A01G412400 chr5B 77.941 136 27 3 1 136 679345739 679345871 1.180000e-11 82.4
46 TraesCS7A01G412400 chr1B 80.088 226 25 8 502 707 404682575 404682800 3.200000e-32 150.0
47 TraesCS7A01G412400 chr1B 100.000 28 0 0 1168 1195 9261424 9261397 9.000000e-03 52.8
48 TraesCS7A01G412400 chr4B 81.529 157 23 6 16 169 100329897 100329744 1.940000e-24 124.0
49 TraesCS7A01G412400 chr4B 85.965 57 8 0 5030 5086 628125802 628125858 1.540000e-05 62.1
50 TraesCS7A01G412400 chr6B 86.538 52 7 0 93 144 60669463 60669514 1.990000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G412400 chr7A 603290733 603295860 5127 False 9470.000000 9470 100.000000 1 5128 1 chr7A.!!$F3 5127
1 TraesCS7A01G412400 chr7D 523044828 523048836 4008 False 2092.666667 3062 93.733333 1 4295 3 chr7D.!!$F1 4294
2 TraesCS7A01G412400 chr7D 29765563 29766204 641 True 806.000000 806 89.457000 4488 5126 1 chr7D.!!$R1 638
3 TraesCS7A01G412400 chr7B 557057180 557060745 3565 False 1655.000000 2776 91.222667 734 4295 3 chr7B.!!$F1 3561
4 TraesCS7A01G412400 chr5D 524730303 524730911 608 False 532.000000 532 82.935000 4290 4898 1 chr5D.!!$F3 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 649 0.167908 TGCAACGCGCCTAAATCTTG 59.832 50.0 5.73 1.04 41.33 3.02 F
648 650 0.168128 GCAACGCGCCTAAATCTTGT 59.832 50.0 5.73 0.00 32.94 3.16 F
1343 1349 0.464013 TTCCTACCTCTCTCGCTCCG 60.464 60.0 0.00 0.00 0.00 4.63 F
2772 2849 0.038599 TGGTGGATGCTGTTCATGCT 59.961 50.0 0.00 0.00 43.11 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 1675 1.089481 AGCCGAACATATGCCACACG 61.089 55.0 1.58 2.05 0.00 4.49 R
1668 1679 1.093972 CACAAGCCGAACATATGCCA 58.906 50.0 1.58 0.00 0.00 4.92 R
3202 3288 0.179045 ATATTGGAGCAGCACCGTCC 60.179 55.0 4.22 0.00 0.00 4.79 R
4316 4402 0.036765 TCGGAATGTTTGGACCGGAG 60.037 55.0 9.46 0.00 44.57 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.940768 ATTTGGTTTGGTTTATATGAAATCCG 57.059 30.769 0.00 0.00 0.00 4.18
85 86 7.897575 TCAAACAATGGTTAAAATGTATGCC 57.102 32.000 0.00 0.00 35.82 4.40
87 88 5.004922 ACAATGGTTAAAATGTATGCCGG 57.995 39.130 0.00 0.00 0.00 6.13
88 89 4.707448 ACAATGGTTAAAATGTATGCCGGA 59.293 37.500 5.05 0.00 0.00 5.14
89 90 4.911514 ATGGTTAAAATGTATGCCGGAC 57.088 40.909 5.05 0.00 0.00 4.79
91 92 4.079970 TGGTTAAAATGTATGCCGGACAA 58.920 39.130 5.05 0.00 0.00 3.18
92 93 4.707448 TGGTTAAAATGTATGCCGGACAAT 59.293 37.500 5.05 0.00 0.00 2.71
93 94 5.040635 GGTTAAAATGTATGCCGGACAATG 58.959 41.667 5.05 0.00 0.00 2.82
94 95 5.393678 GGTTAAAATGTATGCCGGACAATGT 60.394 40.000 5.05 0.00 0.00 2.71
100 101 2.727123 ATGCCGGACAATGTTGGATA 57.273 45.000 5.05 0.00 0.00 2.59
117 118 2.095532 GGATATCCGACACTCGTATCCG 59.904 54.545 5.86 0.00 37.86 4.18
144 146 1.906824 GACTGGTCCCTGTCCGTGA 60.907 63.158 11.19 0.00 38.44 4.35
145 147 2.156051 GACTGGTCCCTGTCCGTGAC 62.156 65.000 11.19 0.00 38.44 3.67
166 168 4.192317 ACCAGATGCGGAAGAGAATTTAC 58.808 43.478 0.00 0.00 0.00 2.01
178 180 3.194116 AGAGAATTTACGGGTGAGCGTTA 59.806 43.478 0.00 0.00 0.00 3.18
195 197 4.387862 AGCGTTAAAGATGTAGGTCAAACG 59.612 41.667 0.00 0.00 40.85 3.60
238 240 2.732468 CGAGCGAGGGATGCATCG 60.732 66.667 17.25 17.25 41.79 3.84
259 261 3.982058 CGTTAGCTCGGAATATCAACCTC 59.018 47.826 0.00 0.00 0.00 3.85
276 278 4.326504 ACCTCATTTTTGCAACCTTCTG 57.673 40.909 0.00 0.00 0.00 3.02
312 314 1.471501 CGGCTCTACAGCTTGCATACA 60.472 52.381 0.00 0.00 46.03 2.29
315 317 3.265791 GCTCTACAGCTTGCATACAACT 58.734 45.455 0.00 0.00 43.09 3.16
324 326 4.523943 AGCTTGCATACAACTTTGGATTGA 59.476 37.500 0.00 0.00 26.26 2.57
325 327 4.860907 GCTTGCATACAACTTTGGATTGAG 59.139 41.667 0.00 0.00 26.26 3.02
339 341 4.313282 TGGATTGAGAATGCGAGATGATC 58.687 43.478 0.00 0.00 31.00 2.92
341 343 4.389382 GGATTGAGAATGCGAGATGATCAG 59.611 45.833 0.09 0.00 0.00 2.90
351 353 4.142752 TGCGAGATGATCAGAAAGCAAAAG 60.143 41.667 13.81 0.00 0.00 2.27
352 354 4.093998 GCGAGATGATCAGAAAGCAAAAGA 59.906 41.667 0.09 0.00 0.00 2.52
361 363 4.024048 TCAGAAAGCAAAAGATGTTCGTCC 60.024 41.667 0.00 0.00 0.00 4.79
385 387 2.263077 CGAGACCAAGGACTTTCATCG 58.737 52.381 0.00 0.00 0.00 3.84
388 390 3.665190 AGACCAAGGACTTTCATCGTTC 58.335 45.455 0.00 0.00 0.00 3.95
404 406 1.136529 CGTTCAGCACGTGTTCATCTG 60.137 52.381 18.38 14.87 44.49 2.90
415 417 3.061295 CGTGTTCATCTGAGACCATTTCG 59.939 47.826 0.00 0.00 0.00 3.46
455 457 9.317936 CTATGTCAAAATCAACTCACATAGCTA 57.682 33.333 0.00 0.00 37.78 3.32
456 458 7.364522 TGTCAAAATCAACTCACATAGCTAC 57.635 36.000 0.00 0.00 0.00 3.58
457 459 7.161404 TGTCAAAATCAACTCACATAGCTACT 58.839 34.615 0.00 0.00 0.00 2.57
458 460 7.331934 TGTCAAAATCAACTCACATAGCTACTC 59.668 37.037 0.00 0.00 0.00 2.59
459 461 6.531594 TCAAAATCAACTCACATAGCTACTCG 59.468 38.462 0.00 0.00 0.00 4.18
460 462 3.422417 TCAACTCACATAGCTACTCGC 57.578 47.619 0.00 0.00 39.57 5.03
461 463 2.752903 TCAACTCACATAGCTACTCGCA 59.247 45.455 0.00 0.00 42.61 5.10
462 464 3.192633 TCAACTCACATAGCTACTCGCAA 59.807 43.478 0.00 0.00 42.61 4.85
463 465 3.868757 ACTCACATAGCTACTCGCAAA 57.131 42.857 0.00 0.00 42.61 3.68
464 466 4.188247 ACTCACATAGCTACTCGCAAAA 57.812 40.909 0.00 0.00 42.61 2.44
465 467 4.566004 ACTCACATAGCTACTCGCAAAAA 58.434 39.130 0.00 0.00 42.61 1.94
466 468 5.178797 ACTCACATAGCTACTCGCAAAAAT 58.821 37.500 0.00 0.00 42.61 1.82
467 469 6.338146 ACTCACATAGCTACTCGCAAAAATA 58.662 36.000 0.00 0.00 42.61 1.40
468 470 6.816640 ACTCACATAGCTACTCGCAAAAATAA 59.183 34.615 0.00 0.00 42.61 1.40
469 471 7.333423 ACTCACATAGCTACTCGCAAAAATAAA 59.667 33.333 0.00 0.00 42.61 1.40
470 472 8.208718 TCACATAGCTACTCGCAAAAATAAAT 57.791 30.769 0.00 0.00 42.61 1.40
471 473 9.320352 TCACATAGCTACTCGCAAAAATAAATA 57.680 29.630 0.00 0.00 42.61 1.40
472 474 9.929722 CACATAGCTACTCGCAAAAATAAATAA 57.070 29.630 0.00 0.00 42.61 1.40
496 498 8.798859 AAATTCAACTCACATAGCTGAATACT 57.201 30.769 0.00 0.00 45.85 2.12
497 499 9.890629 AAATTCAACTCACATAGCTGAATACTA 57.109 29.630 0.00 0.00 45.85 1.82
498 500 8.879342 ATTCAACTCACATAGCTGAATACTAC 57.121 34.615 0.00 0.00 45.13 2.73
499 501 6.806751 TCAACTCACATAGCTGAATACTACC 58.193 40.000 0.00 0.00 27.22 3.18
500 502 5.793030 ACTCACATAGCTGAATACTACCC 57.207 43.478 0.00 0.00 0.00 3.69
501 503 4.589374 ACTCACATAGCTGAATACTACCCC 59.411 45.833 0.00 0.00 0.00 4.95
502 504 3.572682 TCACATAGCTGAATACTACCCCG 59.427 47.826 0.00 0.00 0.00 5.73
503 505 3.321111 CACATAGCTGAATACTACCCCGT 59.679 47.826 0.00 0.00 0.00 5.28
504 506 3.573110 ACATAGCTGAATACTACCCCGTC 59.427 47.826 0.00 0.00 0.00 4.79
505 507 2.154567 AGCTGAATACTACCCCGTCA 57.845 50.000 0.00 0.00 0.00 4.35
506 508 1.755380 AGCTGAATACTACCCCGTCAC 59.245 52.381 0.00 0.00 0.00 3.67
507 509 1.535437 GCTGAATACTACCCCGTCACG 60.535 57.143 0.00 0.00 0.00 4.35
509 511 1.106285 GAATACTACCCCGTCACGGT 58.894 55.000 16.87 0.00 46.80 4.83
510 512 1.478105 GAATACTACCCCGTCACGGTT 59.522 52.381 16.87 3.89 46.80 4.44
511 513 1.560505 ATACTACCCCGTCACGGTTT 58.439 50.000 16.87 3.47 46.80 3.27
512 514 2.208132 TACTACCCCGTCACGGTTTA 57.792 50.000 16.87 4.61 46.80 2.01
513 515 0.890683 ACTACCCCGTCACGGTTTAG 59.109 55.000 16.87 16.60 46.80 1.85
514 516 1.176527 CTACCCCGTCACGGTTTAGA 58.823 55.000 16.87 0.00 46.80 2.10
515 517 1.545582 CTACCCCGTCACGGTTTAGAA 59.454 52.381 16.87 0.00 46.80 2.10
516 518 0.319405 ACCCCGTCACGGTTTAGAAG 59.681 55.000 16.87 0.00 46.80 2.85
517 519 0.390735 CCCCGTCACGGTTTAGAAGG 60.391 60.000 16.87 2.88 46.80 3.46
518 520 1.017701 CCCGTCACGGTTTAGAAGGC 61.018 60.000 16.87 0.00 46.80 4.35
519 521 1.349259 CCGTCACGGTTTAGAAGGCG 61.349 60.000 8.54 0.00 42.73 5.52
520 522 0.665369 CGTCACGGTTTAGAAGGCGT 60.665 55.000 0.00 0.00 0.00 5.68
521 523 0.788391 GTCACGGTTTAGAAGGCGTG 59.212 55.000 0.00 0.00 0.00 5.34
522 524 0.947180 TCACGGTTTAGAAGGCGTGC 60.947 55.000 0.00 0.00 0.00 5.34
523 525 0.949105 CACGGTTTAGAAGGCGTGCT 60.949 55.000 0.00 0.00 0.00 4.40
524 526 0.250166 ACGGTTTAGAAGGCGTGCTT 60.250 50.000 0.00 0.00 0.00 3.91
525 527 1.001181 ACGGTTTAGAAGGCGTGCTTA 59.999 47.619 0.00 0.00 0.00 3.09
526 528 1.659098 CGGTTTAGAAGGCGTGCTTAG 59.341 52.381 0.00 0.00 0.00 2.18
527 529 2.673043 CGGTTTAGAAGGCGTGCTTAGA 60.673 50.000 0.00 0.00 0.00 2.10
528 530 3.332034 GGTTTAGAAGGCGTGCTTAGAA 58.668 45.455 0.00 0.00 0.00 2.10
529 531 3.749609 GGTTTAGAAGGCGTGCTTAGAAA 59.250 43.478 0.00 0.00 0.00 2.52
530 532 4.395231 GGTTTAGAAGGCGTGCTTAGAAAT 59.605 41.667 0.00 0.00 0.00 2.17
531 533 5.106277 GGTTTAGAAGGCGTGCTTAGAAATT 60.106 40.000 0.00 0.00 0.00 1.82
532 534 5.796350 TTAGAAGGCGTGCTTAGAAATTC 57.204 39.130 0.00 0.00 0.00 2.17
533 535 3.944087 AGAAGGCGTGCTTAGAAATTCT 58.056 40.909 0.00 0.00 0.00 2.40
534 536 4.327680 AGAAGGCGTGCTTAGAAATTCTT 58.672 39.130 0.00 0.00 0.00 2.52
535 537 4.762251 AGAAGGCGTGCTTAGAAATTCTTT 59.238 37.500 0.00 0.00 0.00 2.52
536 538 4.425577 AGGCGTGCTTAGAAATTCTTTG 57.574 40.909 0.00 0.00 0.00 2.77
537 539 3.191371 AGGCGTGCTTAGAAATTCTTTGG 59.809 43.478 0.00 0.00 0.00 3.28
538 540 3.501950 GCGTGCTTAGAAATTCTTTGGG 58.498 45.455 0.00 0.00 0.00 4.12
539 541 3.190535 GCGTGCTTAGAAATTCTTTGGGA 59.809 43.478 0.00 0.00 0.00 4.37
540 542 4.723248 CGTGCTTAGAAATTCTTTGGGAC 58.277 43.478 0.00 2.94 0.00 4.46
541 543 4.379499 CGTGCTTAGAAATTCTTTGGGACC 60.379 45.833 0.00 0.00 0.00 4.46
542 544 4.767409 GTGCTTAGAAATTCTTTGGGACCT 59.233 41.667 0.00 0.00 0.00 3.85
543 545 5.944007 GTGCTTAGAAATTCTTTGGGACCTA 59.056 40.000 0.00 0.00 0.00 3.08
544 546 6.603599 GTGCTTAGAAATTCTTTGGGACCTAT 59.396 38.462 0.00 0.00 0.00 2.57
545 547 6.603201 TGCTTAGAAATTCTTTGGGACCTATG 59.397 38.462 0.00 0.00 0.00 2.23
546 548 6.603599 GCTTAGAAATTCTTTGGGACCTATGT 59.396 38.462 0.00 0.00 0.00 2.29
547 549 7.415653 GCTTAGAAATTCTTTGGGACCTATGTG 60.416 40.741 0.00 0.00 0.00 3.21
548 550 5.264395 AGAAATTCTTTGGGACCTATGTGG 58.736 41.667 0.00 0.00 42.93 4.17
563 565 6.773976 CCTATGTGGTTATTCATTGGTTGT 57.226 37.500 0.00 0.00 34.20 3.32
564 566 6.563422 CCTATGTGGTTATTCATTGGTTGTG 58.437 40.000 0.00 0.00 34.20 3.33
565 567 6.376864 CCTATGTGGTTATTCATTGGTTGTGA 59.623 38.462 0.00 0.00 34.20 3.58
566 568 5.703978 TGTGGTTATTCATTGGTTGTGAG 57.296 39.130 0.00 0.00 0.00 3.51
567 569 5.380900 TGTGGTTATTCATTGGTTGTGAGA 58.619 37.500 0.00 0.00 0.00 3.27
568 570 6.009589 TGTGGTTATTCATTGGTTGTGAGAT 58.990 36.000 0.00 0.00 0.00 2.75
569 571 6.072008 TGTGGTTATTCATTGGTTGTGAGATG 60.072 38.462 0.00 0.00 0.00 2.90
570 572 6.009589 TGGTTATTCATTGGTTGTGAGATGT 58.990 36.000 0.00 0.00 0.00 3.06
571 573 6.072008 TGGTTATTCATTGGTTGTGAGATGTG 60.072 38.462 0.00 0.00 0.00 3.21
572 574 3.921119 TTCATTGGTTGTGAGATGTGC 57.079 42.857 0.00 0.00 0.00 4.57
573 575 3.144657 TCATTGGTTGTGAGATGTGCT 57.855 42.857 0.00 0.00 0.00 4.40
574 576 4.284829 TCATTGGTTGTGAGATGTGCTA 57.715 40.909 0.00 0.00 0.00 3.49
575 577 4.650734 TCATTGGTTGTGAGATGTGCTAA 58.349 39.130 0.00 0.00 0.00 3.09
576 578 5.069318 TCATTGGTTGTGAGATGTGCTAAA 58.931 37.500 0.00 0.00 0.00 1.85
577 579 5.534278 TCATTGGTTGTGAGATGTGCTAAAA 59.466 36.000 0.00 0.00 0.00 1.52
578 580 5.843673 TTGGTTGTGAGATGTGCTAAAAA 57.156 34.783 0.00 0.00 0.00 1.94
601 603 7.658179 AAATAGCATTCACACTACATATCGG 57.342 36.000 0.00 0.00 0.00 4.18
602 604 4.937201 AGCATTCACACTACATATCGGA 57.063 40.909 0.00 0.00 0.00 4.55
603 605 4.876125 AGCATTCACACTACATATCGGAG 58.124 43.478 0.00 0.00 0.00 4.63
604 606 4.342378 AGCATTCACACTACATATCGGAGT 59.658 41.667 0.00 0.00 0.00 3.85
605 607 5.535030 AGCATTCACACTACATATCGGAGTA 59.465 40.000 0.00 0.00 0.00 2.59
606 608 5.629849 GCATTCACACTACATATCGGAGTAC 59.370 44.000 0.00 0.00 0.00 2.73
607 609 6.515200 GCATTCACACTACATATCGGAGTACT 60.515 42.308 0.00 0.00 0.00 2.73
608 610 7.308408 GCATTCACACTACATATCGGAGTACTA 60.308 40.741 0.00 0.00 0.00 1.82
609 611 8.565416 CATTCACACTACATATCGGAGTACTAA 58.435 37.037 0.00 0.00 0.00 2.24
610 612 8.687292 TTCACACTACATATCGGAGTACTAAT 57.313 34.615 0.00 0.00 0.00 1.73
611 613 8.687292 TCACACTACATATCGGAGTACTAATT 57.313 34.615 0.00 0.00 0.00 1.40
612 614 9.783081 TCACACTACATATCGGAGTACTAATTA 57.217 33.333 0.00 0.00 0.00 1.40
614 616 8.728833 ACACTACATATCGGAGTACTAATTAGC 58.271 37.037 12.54 0.00 0.00 3.09
615 617 8.948145 CACTACATATCGGAGTACTAATTAGCT 58.052 37.037 12.54 2.42 0.00 3.32
635 637 8.609478 TTAGCTACTAAAAATAAATGCAACGC 57.391 30.769 0.00 0.00 0.00 4.84
636 638 5.737290 AGCTACTAAAAATAAATGCAACGCG 59.263 36.000 3.53 3.53 0.00 6.01
637 639 4.816277 ACTAAAAATAAATGCAACGCGC 57.184 36.364 5.73 0.00 42.89 6.86
638 640 3.610677 ACTAAAAATAAATGCAACGCGCC 59.389 39.130 5.73 0.00 41.33 6.53
639 641 2.362169 AAAATAAATGCAACGCGCCT 57.638 40.000 5.73 0.00 41.33 5.52
640 642 3.495670 AAAATAAATGCAACGCGCCTA 57.504 38.095 5.73 0.00 41.33 3.93
641 643 3.495670 AAATAAATGCAACGCGCCTAA 57.504 38.095 5.73 0.00 41.33 2.69
642 644 3.495670 AATAAATGCAACGCGCCTAAA 57.504 38.095 5.73 0.00 41.33 1.85
643 645 3.708563 ATAAATGCAACGCGCCTAAAT 57.291 38.095 5.73 0.00 41.33 1.40
644 646 1.908065 AAATGCAACGCGCCTAAATC 58.092 45.000 5.73 0.00 41.33 2.17
645 647 1.094785 AATGCAACGCGCCTAAATCT 58.905 45.000 5.73 0.00 41.33 2.40
646 648 1.094785 ATGCAACGCGCCTAAATCTT 58.905 45.000 5.73 0.00 41.33 2.40
647 649 0.167908 TGCAACGCGCCTAAATCTTG 59.832 50.000 5.73 1.04 41.33 3.02
648 650 0.168128 GCAACGCGCCTAAATCTTGT 59.832 50.000 5.73 0.00 32.94 3.16
649 651 1.790481 GCAACGCGCCTAAATCTTGTC 60.790 52.381 5.73 0.00 32.94 3.18
650 652 1.732259 CAACGCGCCTAAATCTTGTCT 59.268 47.619 5.73 0.00 0.00 3.41
651 653 2.927477 CAACGCGCCTAAATCTTGTCTA 59.073 45.455 5.73 0.00 0.00 2.59
652 654 3.454371 ACGCGCCTAAATCTTGTCTAT 57.546 42.857 5.73 0.00 0.00 1.98
653 655 3.793559 ACGCGCCTAAATCTTGTCTATT 58.206 40.909 5.73 0.00 0.00 1.73
654 656 4.940463 ACGCGCCTAAATCTTGTCTATTA 58.060 39.130 5.73 0.00 0.00 0.98
655 657 5.539048 ACGCGCCTAAATCTTGTCTATTAT 58.461 37.500 5.73 0.00 0.00 1.28
656 658 5.405571 ACGCGCCTAAATCTTGTCTATTATG 59.594 40.000 5.73 0.00 0.00 1.90
657 659 5.633601 CGCGCCTAAATCTTGTCTATTATGA 59.366 40.000 0.00 0.00 0.00 2.15
658 660 6.145534 CGCGCCTAAATCTTGTCTATTATGAA 59.854 38.462 0.00 0.00 0.00 2.57
659 661 7.307160 CGCGCCTAAATCTTGTCTATTATGAAA 60.307 37.037 0.00 0.00 0.00 2.69
660 662 8.342634 GCGCCTAAATCTTGTCTATTATGAAAA 58.657 33.333 0.00 0.00 0.00 2.29
697 699 6.851222 AATTGTGCCTTCTAATCTATGACG 57.149 37.500 0.00 0.00 0.00 4.35
698 700 4.322080 TGTGCCTTCTAATCTATGACGG 57.678 45.455 0.00 0.00 0.00 4.79
699 701 3.958147 TGTGCCTTCTAATCTATGACGGA 59.042 43.478 0.00 0.00 0.00 4.69
700 702 4.038042 TGTGCCTTCTAATCTATGACGGAG 59.962 45.833 0.00 0.00 0.00 4.63
701 703 3.574396 TGCCTTCTAATCTATGACGGAGG 59.426 47.826 0.00 0.00 0.00 4.30
702 704 3.056465 GCCTTCTAATCTATGACGGAGGG 60.056 52.174 0.00 0.00 0.00 4.30
703 705 4.408276 CCTTCTAATCTATGACGGAGGGA 58.592 47.826 0.00 0.00 0.00 4.20
704 706 4.461081 CCTTCTAATCTATGACGGAGGGAG 59.539 50.000 0.00 0.00 0.00 4.30
705 707 4.726035 TCTAATCTATGACGGAGGGAGT 57.274 45.455 0.00 0.00 0.00 3.85
755 757 2.899339 GCGGCCTGCTTCCAGATC 60.899 66.667 11.61 0.00 41.77 2.75
782 784 3.503363 TCATTGCATCCAAGTCTCAACAC 59.497 43.478 0.00 0.00 33.80 3.32
783 785 2.636647 TGCATCCAAGTCTCAACACA 57.363 45.000 0.00 0.00 0.00 3.72
815 817 4.836825 CATGCTGAAAAAGACCTCCTCTA 58.163 43.478 0.00 0.00 0.00 2.43
905 908 1.077005 CCCACCCAATTCTTCCCTTCA 59.923 52.381 0.00 0.00 0.00 3.02
1114 1120 1.969589 AACCCGCGCCGAAAATTCT 60.970 52.632 0.00 0.00 0.00 2.40
1137 1143 1.216710 CCTCTGGTCTTCGCTCACC 59.783 63.158 0.00 0.00 0.00 4.02
1145 1151 1.153823 CTTCGCTCACCCGTTCGAT 60.154 57.895 0.00 0.00 0.00 3.59
1161 1167 0.657840 CGATTCTGGCGACCATTTCC 59.342 55.000 0.00 0.00 30.82 3.13
1327 1333 1.202382 CGGGGTAATCTCGTCACTTCC 60.202 57.143 0.00 0.00 0.00 3.46
1338 1344 1.666700 CGTCACTTCCTACCTCTCTCG 59.333 57.143 0.00 0.00 0.00 4.04
1342 1348 1.314730 CTTCCTACCTCTCTCGCTCC 58.685 60.000 0.00 0.00 0.00 4.70
1343 1349 0.464013 TTCCTACCTCTCTCGCTCCG 60.464 60.000 0.00 0.00 0.00 4.63
1345 1351 1.525077 CTACCTCTCTCGCTCCGCT 60.525 63.158 0.00 0.00 0.00 5.52
1431 1438 0.701303 GCTCGTCGTACTGTCGTTTG 59.299 55.000 0.00 0.00 0.00 2.93
1432 1439 0.701303 CTCGTCGTACTGTCGTTTGC 59.299 55.000 0.00 0.00 0.00 3.68
1435 1442 0.782384 GTCGTACTGTCGTTTGCCTG 59.218 55.000 0.00 0.00 0.00 4.85
1453 1460 3.193479 GCCTGGGTCTTGGATTTGTTTAG 59.807 47.826 0.00 0.00 0.00 1.85
1530 1537 7.804843 ATCTGGCAGAATGATTCTCTTAAAG 57.195 36.000 22.84 0.00 39.69 1.85
1555 1562 1.873698 TGTTAGGCCACTTTGTCGTC 58.126 50.000 5.01 0.00 0.00 4.20
1656 1667 7.017319 ACCTACCTTGCTTCATAGTTTAAGT 57.983 36.000 0.00 0.00 0.00 2.24
1658 1669 8.039538 ACCTACCTTGCTTCATAGTTTAAGTAC 58.960 37.037 0.00 0.00 0.00 2.73
1659 1670 8.038944 CCTACCTTGCTTCATAGTTTAAGTACA 58.961 37.037 0.00 0.00 0.00 2.90
1660 1671 7.907214 ACCTTGCTTCATAGTTTAAGTACAG 57.093 36.000 0.00 0.00 0.00 2.74
1661 1672 7.450903 ACCTTGCTTCATAGTTTAAGTACAGT 58.549 34.615 0.00 0.00 0.00 3.55
1668 1679 9.403110 CTTCATAGTTTAAGTACAGTAACGTGT 57.597 33.333 0.00 0.00 34.21 4.49
1669 1680 8.732413 TCATAGTTTAAGTACAGTAACGTGTG 57.268 34.615 0.00 0.00 31.46 3.82
1670 1681 7.809331 TCATAGTTTAAGTACAGTAACGTGTGG 59.191 37.037 0.00 0.00 31.46 4.17
1721 1733 3.388024 TGATCTTGGGAATCGGAGTAAGG 59.612 47.826 0.00 0.00 0.00 2.69
1739 1751 8.031864 GGAGTAAGGTCCTTAAACTTGTACTAC 58.968 40.741 13.12 3.34 33.30 2.73
1761 1773 4.889409 ACAAGTGTGTCAATTGAGGTTCAT 59.111 37.500 8.80 0.00 41.15 2.57
1804 1859 2.177394 TATCCTGTTGCGCTTTGACA 57.823 45.000 9.73 7.60 0.00 3.58
1805 1860 1.317613 ATCCTGTTGCGCTTTGACAA 58.682 45.000 9.73 0.00 0.00 3.18
1808 1863 2.483877 TCCTGTTGCGCTTTGACAATAG 59.516 45.455 9.73 0.44 35.49 1.73
1943 2007 6.320164 GGCAACACCCACAGTATGATTTATAA 59.680 38.462 0.00 0.00 39.69 0.98
1952 2016 9.650539 CCACAGTATGATTTATAATGAGAGAGG 57.349 37.037 3.30 0.00 39.15 3.69
1957 2021 7.976135 ATGATTTATAATGAGAGAGGTGCAC 57.024 36.000 8.80 8.80 0.00 4.57
1972 2036 1.804151 GTGCACTGGATTCGCAAGTAA 59.196 47.619 10.32 0.00 37.41 2.24
2016 2080 5.799213 AGCTCAACTGCTCAAGTACTTAAT 58.201 37.500 8.04 0.00 39.34 1.40
2175 2251 6.627087 TTGGAAACTGGAGAGATACATCTT 57.373 37.500 0.00 0.00 37.25 2.40
2176 2252 6.227298 TGGAAACTGGAGAGATACATCTTC 57.773 41.667 0.00 0.00 37.25 2.87
2177 2253 5.960811 TGGAAACTGGAGAGATACATCTTCT 59.039 40.000 0.00 0.00 37.25 2.85
2305 2381 4.104738 TGAGAAAAACATCTGGGAGTCCTT 59.895 41.667 9.58 0.00 0.00 3.36
2308 2384 4.664688 AAAACATCTGGGAGTCCTTGAT 57.335 40.909 9.58 10.04 0.00 2.57
2355 2431 8.918202 TGAATTCTTACATCAAACTAAGTGGT 57.082 30.769 7.05 0.00 0.00 4.16
2360 2436 8.263940 TCTTACATCAAACTAAGTGGTATTGC 57.736 34.615 0.00 0.00 0.00 3.56
2361 2437 5.897377 ACATCAAACTAAGTGGTATTGCC 57.103 39.130 0.00 0.00 37.90 4.52
2362 2438 5.570320 ACATCAAACTAAGTGGTATTGCCT 58.430 37.500 0.00 0.00 38.35 4.75
2363 2439 6.010219 ACATCAAACTAAGTGGTATTGCCTT 58.990 36.000 0.00 0.00 38.35 4.35
2364 2440 6.493458 ACATCAAACTAAGTGGTATTGCCTTT 59.507 34.615 0.00 0.00 38.35 3.11
2365 2441 6.969993 TCAAACTAAGTGGTATTGCCTTTT 57.030 33.333 0.00 0.00 38.35 2.27
2366 2442 6.977213 TCAAACTAAGTGGTATTGCCTTTTC 58.023 36.000 0.00 0.00 38.35 2.29
2367 2443 5.622770 AACTAAGTGGTATTGCCTTTTCG 57.377 39.130 0.00 0.00 38.35 3.46
2368 2444 4.901868 ACTAAGTGGTATTGCCTTTTCGA 58.098 39.130 0.00 0.00 38.35 3.71
2369 2445 4.935808 ACTAAGTGGTATTGCCTTTTCGAG 59.064 41.667 0.00 0.00 38.35 4.04
2370 2446 3.695830 AGTGGTATTGCCTTTTCGAGA 57.304 42.857 0.00 0.00 38.35 4.04
2371 2447 4.015872 AGTGGTATTGCCTTTTCGAGAA 57.984 40.909 0.00 0.00 38.35 2.87
2372 2448 4.394729 AGTGGTATTGCCTTTTCGAGAAA 58.605 39.130 0.00 0.00 38.35 2.52
2373 2449 4.825085 AGTGGTATTGCCTTTTCGAGAAAA 59.175 37.500 10.17 10.17 38.45 2.29
2374 2450 5.300792 AGTGGTATTGCCTTTTCGAGAAAAA 59.699 36.000 11.50 0.00 39.49 1.94
2400 2476 9.691362 AAAAACTAAGTGGTATTTGCAACATAG 57.309 29.630 0.00 0.00 0.00 2.23
2406 2482 5.882557 AGTGGTATTTGCAACATAGAAGGAG 59.117 40.000 0.00 0.00 0.00 3.69
2772 2849 0.038599 TGGTGGATGCTGTTCATGCT 59.961 50.000 0.00 0.00 43.11 3.79
2874 2952 4.468095 ACTCGTTTCTTTGAAATCCGTG 57.532 40.909 0.00 1.30 0.00 4.94
2969 3047 3.388676 TGTTTCTTTAGACTCCGGGACAA 59.611 43.478 0.00 0.00 0.00 3.18
3175 3261 8.684386 TGTTTTGTCTCCAATGTTGACTAATA 57.316 30.769 0.00 0.00 0.00 0.98
3202 3288 1.048601 ATCCACCAGTATACCAGCCG 58.951 55.000 0.00 0.00 0.00 5.52
3263 3349 3.282021 TCAGCAAGGTGGAAGATATTGC 58.718 45.455 0.11 0.11 45.05 3.56
3325 3411 2.388310 TTGCGACATCGGAAATACCA 57.612 45.000 5.71 0.00 46.19 3.25
3334 3420 5.844004 ACATCGGAAATACCAGACATAGTC 58.156 41.667 0.00 0.00 38.90 2.59
3427 3513 7.233348 CCTTTGCATCCAACCATATAAACCTAT 59.767 37.037 0.00 0.00 0.00 2.57
3428 3514 7.523293 TTGCATCCAACCATATAAACCTATG 57.477 36.000 0.00 0.00 0.00 2.23
3440 3526 0.036765 AACCTATGCGAGCGGAAACA 60.037 50.000 0.00 0.00 0.00 2.83
3441 3527 0.739813 ACCTATGCGAGCGGAAACAC 60.740 55.000 0.00 0.00 0.00 3.32
3442 3528 0.739462 CCTATGCGAGCGGAAACACA 60.739 55.000 0.00 0.00 0.00 3.72
3444 3530 0.037697 TATGCGAGCGGAAACACACT 60.038 50.000 0.00 0.00 0.00 3.55
3450 3536 2.413837 GAGCGGAAACACACTGTGTAT 58.586 47.619 15.25 0.00 46.79 2.29
3451 3537 3.581755 GAGCGGAAACACACTGTGTATA 58.418 45.455 15.25 0.00 46.79 1.47
3453 3539 5.333299 AGCGGAAACACACTGTGTATATA 57.667 39.130 15.25 0.00 46.79 0.86
3481 3567 5.010516 AGCTGATATAGAGATGAACTGCGTT 59.989 40.000 0.00 0.00 0.00 4.84
3642 3728 2.818841 CCGTGGTATCCGCCATCA 59.181 61.111 0.00 0.00 41.08 3.07
3710 3796 0.968901 ACGCCTATGACTCGAACCCA 60.969 55.000 0.00 0.00 0.00 4.51
3719 3805 0.613260 ACTCGAACCCAATGCAGCTA 59.387 50.000 0.00 0.00 0.00 3.32
3749 3835 2.733593 GTCGAACGGCTCAACGCT 60.734 61.111 0.00 0.00 39.13 5.07
3797 3883 2.421314 CTCCACGTGACACAGCCA 59.579 61.111 19.30 0.00 0.00 4.75
4166 4252 5.765182 GTGATCGGAGATGGGATTTATTGTT 59.235 40.000 0.00 0.00 45.12 2.83
4179 4265 8.754080 TGGGATTTATTGTTAAGTGTATTTGGG 58.246 33.333 0.00 0.00 0.00 4.12
4181 4267 8.201464 GGATTTATTGTTAAGTGTATTTGGGGG 58.799 37.037 0.00 0.00 0.00 5.40
4216 4302 1.342555 GCGCATGTAGTGTACACGAA 58.657 50.000 19.93 9.98 42.23 3.85
4221 4307 4.796830 CGCATGTAGTGTACACGAATTAGT 59.203 41.667 19.93 3.70 42.23 2.24
4226 4312 6.253013 TGTAGTGTACACGAATTAGTGATCG 58.747 40.000 23.31 3.14 44.43 3.69
4227 4313 4.669318 AGTGTACACGAATTAGTGATCGG 58.331 43.478 23.31 0.00 44.43 4.18
4228 4314 4.397103 AGTGTACACGAATTAGTGATCGGA 59.603 41.667 23.31 2.67 44.43 4.55
4229 4315 4.733887 GTGTACACGAATTAGTGATCGGAG 59.266 45.833 23.31 1.24 44.43 4.63
4230 4316 4.637091 TGTACACGAATTAGTGATCGGAGA 59.363 41.667 23.31 1.61 44.43 3.71
4231 4317 4.713824 ACACGAATTAGTGATCGGAGAA 57.286 40.909 23.31 0.00 44.43 2.87
4232 4318 4.421948 ACACGAATTAGTGATCGGAGAAC 58.578 43.478 23.31 0.00 44.43 3.01
4233 4319 4.082408 ACACGAATTAGTGATCGGAGAACA 60.082 41.667 23.31 0.00 44.43 3.18
4259 4345 7.451255 AGAGATGGGTTTGTGAAATGTATTTGA 59.549 33.333 0.00 0.00 0.00 2.69
4262 4348 7.353414 TGGGTTTGTGAAATGTATTTGAAGA 57.647 32.000 0.00 0.00 0.00 2.87
4314 4400 4.664677 GCGATGATAGGCGCCGGT 62.665 66.667 23.20 14.30 46.93 5.28
4316 4402 3.044305 GATGATAGGCGCCGGTGC 61.044 66.667 31.86 31.86 0.00 5.01
4317 4403 3.521529 GATGATAGGCGCCGGTGCT 62.522 63.158 36.63 24.87 34.43 4.40
4333 4419 0.608035 TGCTCCGGTCCAAACATTCC 60.608 55.000 0.00 0.00 0.00 3.01
4335 4421 0.036765 CTCCGGTCCAAACATTCCGA 60.037 55.000 0.00 0.00 44.86 4.55
4336 4422 0.616371 TCCGGTCCAAACATTCCGAT 59.384 50.000 0.00 0.00 44.86 4.18
4345 4431 1.742761 AACATTCCGATGGTCTGCTG 58.257 50.000 0.00 0.00 37.60 4.41
4353 4439 0.813210 GATGGTCTGCTGCTAGCCAC 60.813 60.000 13.29 4.56 41.51 5.01
4377 4463 5.447279 CCCGATTTAGAAAATGAGAACCGTG 60.447 44.000 0.00 0.00 0.00 4.94
4388 4474 0.820871 AGAACCGTGAGATCTCAGCC 59.179 55.000 25.76 13.89 40.75 4.85
4389 4475 0.532573 GAACCGTGAGATCTCAGCCA 59.467 55.000 25.76 1.20 40.75 4.75
4390 4476 1.137872 GAACCGTGAGATCTCAGCCAT 59.862 52.381 25.76 12.58 40.75 4.40
4391 4477 2.073252 ACCGTGAGATCTCAGCCATA 57.927 50.000 25.76 0.00 40.75 2.74
4392 4478 2.603021 ACCGTGAGATCTCAGCCATAT 58.397 47.619 25.76 5.91 40.75 1.78
4421 4508 2.200081 CCCTTCCCATCTTCCTTCTCA 58.800 52.381 0.00 0.00 0.00 3.27
4427 4514 1.137872 CCATCTTCCTTCTCACTCCCG 59.862 57.143 0.00 0.00 0.00 5.14
4429 4516 1.153745 CTTCCTTCTCACTCCCGCG 60.154 63.158 0.00 0.00 0.00 6.46
4430 4517 2.564553 CTTCCTTCTCACTCCCGCGG 62.565 65.000 21.04 21.04 0.00 6.46
4437 4524 3.536917 CACTCCCGCGGGCATAGA 61.537 66.667 39.89 21.27 34.68 1.98
4476 4563 2.990479 GGGATTCACACGCTCCCT 59.010 61.111 0.00 0.00 44.49 4.20
4553 4648 3.003763 GAGGTCCCGCCCTTGTCT 61.004 66.667 0.00 0.00 38.26 3.41
4554 4649 1.684734 GAGGTCCCGCCCTTGTCTA 60.685 63.158 0.00 0.00 38.26 2.59
4575 4670 3.693807 ACTGAGATTGCATCACAACCAT 58.306 40.909 0.00 0.00 42.27 3.55
4591 4686 4.462483 ACAACCATCATTGATTTTAGGCGT 59.538 37.500 0.00 0.00 33.57 5.68
4605 4700 0.392998 AGGCGTGATTCACCATGGAC 60.393 55.000 21.47 3.52 0.00 4.02
4638 4733 4.819761 GGTCAGATCCAGCGCGCA 62.820 66.667 35.10 13.97 0.00 6.09
4668 4763 0.464036 TTGCTACATCCCCAGCGTAG 59.536 55.000 0.00 0.00 40.79 3.51
4709 4804 2.741985 CGTCGCCTTGCACCATCA 60.742 61.111 0.00 0.00 0.00 3.07
4710 4805 2.870372 GTCGCCTTGCACCATCAC 59.130 61.111 0.00 0.00 0.00 3.06
4781 4876 9.643693 CAGTTGAAGCAAATCATTATAAGGTTT 57.356 29.630 0.00 0.00 0.00 3.27
4825 4921 2.561419 AGCAAAATCAAGCTCAGCACAT 59.439 40.909 0.00 0.00 36.00 3.21
4845 4941 9.836864 AGCACATATAACTTCAGTGATTGATTA 57.163 29.630 0.00 0.00 35.27 1.75
4882 4978 9.646427 AAACACTAGTTTCAGCAAAAATAAACA 57.354 25.926 0.00 0.00 44.35 2.83
4887 4983 6.872920 AGTTTCAGCAAAAATAAACACTGGA 58.127 32.000 0.00 0.00 34.92 3.86
4905 5001 5.902613 CTGGATCCAGCAAAATAACTCAA 57.097 39.130 28.45 0.00 37.24 3.02
4975 5072 3.476552 CACACAGAAAGGCTAGTTCCAA 58.523 45.455 0.00 0.00 0.00 3.53
4976 5073 4.074970 CACACAGAAAGGCTAGTTCCAAT 58.925 43.478 0.00 0.00 0.00 3.16
4990 5087 9.169592 GGCTAGTTCCAATAAAAACATACACTA 57.830 33.333 0.00 0.00 0.00 2.74
5011 5108 2.354821 AGTTCCAGCAAAAACACTCGTC 59.645 45.455 0.00 0.00 0.00 4.20
5014 5111 0.655733 CAGCAAAAACACTCGTCGGT 59.344 50.000 0.00 0.00 0.00 4.69
5047 5144 1.255882 TTGGTTCCAGCAAATCGCAT 58.744 45.000 0.00 0.00 46.13 4.73
5050 5147 0.527565 GTTCCAGCAAATCGCATGGT 59.472 50.000 0.00 0.00 46.13 3.55
5102 5199 2.094078 GCAAATAGATGGCTGGTTGCAA 60.094 45.455 0.00 0.00 45.15 4.08
5126 5223 0.912487 AAAGGGTCATCCGTAGCCCA 60.912 55.000 0.00 0.00 43.42 5.36
5127 5224 0.694444 AAGGGTCATCCGTAGCCCAT 60.694 55.000 0.00 0.00 43.42 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.286438 GGCGGATTTCATATAAACCAAACC 58.714 41.667 0.00 0.00 0.00 3.27
30 31 1.794512 AAAATCCATGCAAACACGGC 58.205 45.000 0.00 0.00 0.00 5.68
73 74 5.393569 CCAACATTGTCCGGCATACATTTTA 60.394 40.000 0.00 0.00 0.00 1.52
87 88 4.442706 AGTGTCGGATATCCAACATTGTC 58.557 43.478 18.40 5.98 35.14 3.18
88 89 4.442706 GAGTGTCGGATATCCAACATTGT 58.557 43.478 18.40 6.88 35.14 2.71
89 90 3.490896 CGAGTGTCGGATATCCAACATTG 59.509 47.826 18.40 7.95 36.00 2.82
91 92 2.693591 ACGAGTGTCGGATATCCAACAT 59.306 45.455 18.40 7.94 45.59 2.71
92 93 2.097036 ACGAGTGTCGGATATCCAACA 58.903 47.619 21.70 16.93 45.59 3.33
93 94 2.865343 ACGAGTGTCGGATATCCAAC 57.135 50.000 21.70 14.26 45.59 3.77
94 95 3.504906 GGATACGAGTGTCGGATATCCAA 59.495 47.826 21.70 0.00 44.70 3.53
117 118 2.048127 GGACCAGTCCGCAGACAC 60.048 66.667 2.32 0.00 46.15 3.67
144 146 3.356529 AAATTCTCTTCCGCATCTGGT 57.643 42.857 0.00 0.00 0.00 4.00
145 147 3.246226 CGTAAATTCTCTTCCGCATCTGG 59.754 47.826 0.00 0.00 0.00 3.86
166 168 1.722011 ACATCTTTAACGCTCACCCG 58.278 50.000 0.00 0.00 0.00 5.28
178 180 3.181448 ACCCACGTTTGACCTACATCTTT 60.181 43.478 0.00 0.00 0.00 2.52
214 216 0.673985 CATCCCTCGCTCGGATAACA 59.326 55.000 0.00 0.00 38.08 2.41
221 223 2.732468 CGATGCATCCCTCGCTCG 60.732 66.667 20.87 4.31 0.00 5.03
238 240 4.945246 TGAGGTTGATATTCCGAGCTAAC 58.055 43.478 0.00 0.00 0.00 2.34
259 261 4.326504 AGGACAGAAGGTTGCAAAAATG 57.673 40.909 0.00 0.00 0.00 2.32
276 278 1.137872 AGCCGAGTCATGATCAAGGAC 59.862 52.381 18.32 18.32 0.00 3.85
312 314 4.326826 TCTCGCATTCTCAATCCAAAGTT 58.673 39.130 0.00 0.00 0.00 2.66
315 317 4.516323 TCATCTCGCATTCTCAATCCAAA 58.484 39.130 0.00 0.00 0.00 3.28
324 326 3.808726 GCTTTCTGATCATCTCGCATTCT 59.191 43.478 0.00 0.00 0.00 2.40
325 327 3.558829 TGCTTTCTGATCATCTCGCATTC 59.441 43.478 0.00 0.00 0.00 2.67
339 341 4.023707 AGGACGAACATCTTTTGCTTTCTG 60.024 41.667 0.00 0.00 0.00 3.02
341 343 4.489679 AGGACGAACATCTTTTGCTTTC 57.510 40.909 0.00 0.00 0.00 2.62
361 363 4.252971 TGAAAGTCCTTGGTCTCGTTAG 57.747 45.455 0.00 0.00 0.00 2.34
366 368 3.320673 ACGATGAAAGTCCTTGGTCTC 57.679 47.619 0.00 0.00 0.00 3.36
371 373 2.807967 TGCTGAACGATGAAAGTCCTTG 59.192 45.455 0.00 0.00 0.00 3.61
374 376 2.882742 GTGCTGAACGATGAAAGTCC 57.117 50.000 0.00 0.00 0.00 3.85
385 387 2.135139 TCAGATGAACACGTGCTGAAC 58.865 47.619 17.22 5.00 33.11 3.18
388 390 1.723542 GTCTCAGATGAACACGTGCTG 59.276 52.381 17.22 14.27 0.00 4.41
404 406 9.736023 AGCAATAAATTTAATCGAAATGGTCTC 57.264 29.630 1.21 0.00 37.82 3.36
435 437 6.700020 CGAGTAGCTATGTGAGTTGATTTTG 58.300 40.000 0.00 0.00 0.00 2.44
475 477 6.183360 GGGTAGTATTCAGCTATGTGAGTTGA 60.183 42.308 0.00 0.00 43.04 3.18
476 478 5.986135 GGGTAGTATTCAGCTATGTGAGTTG 59.014 44.000 0.00 0.00 37.72 3.16
477 479 5.070580 GGGGTAGTATTCAGCTATGTGAGTT 59.929 44.000 0.00 0.00 0.00 3.01
478 480 4.589374 GGGGTAGTATTCAGCTATGTGAGT 59.411 45.833 0.00 0.00 0.00 3.41
479 481 4.321304 CGGGGTAGTATTCAGCTATGTGAG 60.321 50.000 0.00 0.00 0.00 3.51
480 482 3.572682 CGGGGTAGTATTCAGCTATGTGA 59.427 47.826 0.00 0.00 0.00 3.58
481 483 3.321111 ACGGGGTAGTATTCAGCTATGTG 59.679 47.826 0.00 0.00 0.00 3.21
482 484 3.573110 GACGGGGTAGTATTCAGCTATGT 59.427 47.826 0.00 0.00 0.00 2.29
483 485 3.572682 TGACGGGGTAGTATTCAGCTATG 59.427 47.826 0.00 0.00 0.00 2.23
484 486 3.573110 GTGACGGGGTAGTATTCAGCTAT 59.427 47.826 0.00 0.00 0.00 2.97
485 487 2.954318 GTGACGGGGTAGTATTCAGCTA 59.046 50.000 0.00 0.00 0.00 3.32
486 488 1.755380 GTGACGGGGTAGTATTCAGCT 59.245 52.381 0.00 0.00 0.00 4.24
487 489 1.535437 CGTGACGGGGTAGTATTCAGC 60.535 57.143 0.00 0.00 0.00 4.26
488 490 1.066605 CCGTGACGGGGTAGTATTCAG 59.933 57.143 17.80 0.00 44.15 3.02
489 491 1.105457 CCGTGACGGGGTAGTATTCA 58.895 55.000 17.80 0.00 44.15 2.57
490 492 3.953201 CCGTGACGGGGTAGTATTC 57.047 57.895 17.80 0.00 44.15 1.75
501 503 0.665369 ACGCCTTCTAAACCGTGACG 60.665 55.000 0.00 0.00 32.07 4.35
502 504 3.206090 ACGCCTTCTAAACCGTGAC 57.794 52.632 0.00 0.00 32.07 3.67
505 507 0.250166 AAGCACGCCTTCTAAACCGT 60.250 50.000 0.00 0.00 0.00 4.83
506 508 1.659098 CTAAGCACGCCTTCTAAACCG 59.341 52.381 0.00 0.00 34.95 4.44
507 509 2.968675 TCTAAGCACGCCTTCTAAACC 58.031 47.619 0.00 0.00 34.95 3.27
508 510 5.547181 ATTTCTAAGCACGCCTTCTAAAC 57.453 39.130 0.00 0.00 34.95 2.01
509 511 5.938125 AGAATTTCTAAGCACGCCTTCTAAA 59.062 36.000 0.00 0.00 34.95 1.85
510 512 5.488341 AGAATTTCTAAGCACGCCTTCTAA 58.512 37.500 0.00 0.00 34.95 2.10
511 513 5.086104 AGAATTTCTAAGCACGCCTTCTA 57.914 39.130 0.00 0.00 34.95 2.10
512 514 3.944087 AGAATTTCTAAGCACGCCTTCT 58.056 40.909 0.00 0.00 34.95 2.85
513 515 4.686839 AAGAATTTCTAAGCACGCCTTC 57.313 40.909 0.00 0.00 34.95 3.46
514 516 4.321230 CCAAAGAATTTCTAAGCACGCCTT 60.321 41.667 0.00 0.00 35.03 4.35
515 517 3.191371 CCAAAGAATTTCTAAGCACGCCT 59.809 43.478 0.00 0.00 35.03 5.52
516 518 3.501950 CCAAAGAATTTCTAAGCACGCC 58.498 45.455 0.00 0.00 35.03 5.68
517 519 3.190535 TCCCAAAGAATTTCTAAGCACGC 59.809 43.478 0.00 0.00 35.03 5.34
518 520 4.379499 GGTCCCAAAGAATTTCTAAGCACG 60.379 45.833 0.00 0.00 35.03 5.34
519 521 4.767409 AGGTCCCAAAGAATTTCTAAGCAC 59.233 41.667 0.00 0.00 35.03 4.40
520 522 4.998051 AGGTCCCAAAGAATTTCTAAGCA 58.002 39.130 0.00 0.00 35.03 3.91
521 523 6.603599 ACATAGGTCCCAAAGAATTTCTAAGC 59.396 38.462 0.00 0.00 35.03 3.09
522 524 7.067494 CCACATAGGTCCCAAAGAATTTCTAAG 59.933 40.741 0.00 0.00 35.03 2.18
523 525 6.889722 CCACATAGGTCCCAAAGAATTTCTAA 59.110 38.462 0.00 0.00 35.03 2.10
524 526 6.423182 CCACATAGGTCCCAAAGAATTTCTA 58.577 40.000 0.00 0.00 35.03 2.10
525 527 5.264395 CCACATAGGTCCCAAAGAATTTCT 58.736 41.667 0.00 0.00 35.03 2.52
526 528 5.582689 CCACATAGGTCCCAAAGAATTTC 57.417 43.478 0.00 0.00 35.03 2.17
540 542 6.376864 TCACAACCAATGAATAACCACATAGG 59.623 38.462 0.00 0.00 45.67 2.57
541 543 7.336679 TCTCACAACCAATGAATAACCACATAG 59.663 37.037 0.00 0.00 0.00 2.23
542 544 7.171653 TCTCACAACCAATGAATAACCACATA 58.828 34.615 0.00 0.00 0.00 2.29
543 545 6.009589 TCTCACAACCAATGAATAACCACAT 58.990 36.000 0.00 0.00 0.00 3.21
544 546 5.380900 TCTCACAACCAATGAATAACCACA 58.619 37.500 0.00 0.00 0.00 4.17
545 547 5.957842 TCTCACAACCAATGAATAACCAC 57.042 39.130 0.00 0.00 0.00 4.16
546 548 6.009589 ACATCTCACAACCAATGAATAACCA 58.990 36.000 0.00 0.00 0.00 3.67
547 549 6.324819 CACATCTCACAACCAATGAATAACC 58.675 40.000 0.00 0.00 0.00 2.85
548 550 5.801947 GCACATCTCACAACCAATGAATAAC 59.198 40.000 0.00 0.00 0.00 1.89
549 551 5.711506 AGCACATCTCACAACCAATGAATAA 59.288 36.000 0.00 0.00 0.00 1.40
550 552 5.255687 AGCACATCTCACAACCAATGAATA 58.744 37.500 0.00 0.00 0.00 1.75
551 553 4.084287 AGCACATCTCACAACCAATGAAT 58.916 39.130 0.00 0.00 0.00 2.57
552 554 3.489355 AGCACATCTCACAACCAATGAA 58.511 40.909 0.00 0.00 0.00 2.57
553 555 3.144657 AGCACATCTCACAACCAATGA 57.855 42.857 0.00 0.00 0.00 2.57
554 556 5.375417 TTTAGCACATCTCACAACCAATG 57.625 39.130 0.00 0.00 0.00 2.82
555 557 6.403866 TTTTTAGCACATCTCACAACCAAT 57.596 33.333 0.00 0.00 0.00 3.16
556 558 5.843673 TTTTTAGCACATCTCACAACCAA 57.156 34.783 0.00 0.00 0.00 3.67
575 577 8.559536 CCGATATGTAGTGTGAATGCTATTTTT 58.440 33.333 0.00 0.00 0.00 1.94
576 578 7.931407 TCCGATATGTAGTGTGAATGCTATTTT 59.069 33.333 0.00 0.00 0.00 1.82
577 579 7.441836 TCCGATATGTAGTGTGAATGCTATTT 58.558 34.615 0.00 0.00 0.00 1.40
578 580 6.993079 TCCGATATGTAGTGTGAATGCTATT 58.007 36.000 0.00 0.00 0.00 1.73
579 581 6.209589 ACTCCGATATGTAGTGTGAATGCTAT 59.790 38.462 0.00 0.00 0.00 2.97
580 582 5.535030 ACTCCGATATGTAGTGTGAATGCTA 59.465 40.000 0.00 0.00 0.00 3.49
581 583 4.342378 ACTCCGATATGTAGTGTGAATGCT 59.658 41.667 0.00 0.00 0.00 3.79
582 584 4.621991 ACTCCGATATGTAGTGTGAATGC 58.378 43.478 0.00 0.00 0.00 3.56
583 585 6.971602 AGTACTCCGATATGTAGTGTGAATG 58.028 40.000 0.00 0.00 0.00 2.67
584 586 8.687292 TTAGTACTCCGATATGTAGTGTGAAT 57.313 34.615 0.00 0.00 0.00 2.57
585 587 8.687292 ATTAGTACTCCGATATGTAGTGTGAA 57.313 34.615 0.00 0.00 0.00 3.18
586 588 8.687292 AATTAGTACTCCGATATGTAGTGTGA 57.313 34.615 0.00 0.00 0.00 3.58
588 590 8.728833 GCTAATTAGTACTCCGATATGTAGTGT 58.271 37.037 13.91 0.00 0.00 3.55
589 591 8.948145 AGCTAATTAGTACTCCGATATGTAGTG 58.052 37.037 13.91 0.00 0.00 2.74
609 611 9.233232 GCGTTGCATTTATTTTTAGTAGCTAAT 57.767 29.630 0.00 0.00 0.00 1.73
610 612 7.427030 CGCGTTGCATTTATTTTTAGTAGCTAA 59.573 33.333 0.00 0.00 0.00 3.09
611 613 6.902948 CGCGTTGCATTTATTTTTAGTAGCTA 59.097 34.615 0.00 0.00 0.00 3.32
612 614 5.737290 CGCGTTGCATTTATTTTTAGTAGCT 59.263 36.000 0.00 0.00 0.00 3.32
613 615 5.551920 GCGCGTTGCATTTATTTTTAGTAGC 60.552 40.000 8.43 0.00 45.45 3.58
614 616 5.936156 GCGCGTTGCATTTATTTTTAGTAG 58.064 37.500 8.43 0.00 45.45 2.57
615 617 5.918387 GCGCGTTGCATTTATTTTTAGTA 57.082 34.783 8.43 0.00 45.45 1.82
616 618 4.816277 GCGCGTTGCATTTATTTTTAGT 57.184 36.364 8.43 0.00 45.45 2.24
629 631 0.168128 ACAAGATTTAGGCGCGTTGC 59.832 50.000 8.36 0.00 45.38 4.17
630 632 1.732259 AGACAAGATTTAGGCGCGTTG 59.268 47.619 8.36 3.94 0.00 4.10
631 633 2.094762 AGACAAGATTTAGGCGCGTT 57.905 45.000 8.36 0.00 0.00 4.84
632 634 2.953466 TAGACAAGATTTAGGCGCGT 57.047 45.000 8.43 8.08 0.00 6.01
633 635 5.633601 TCATAATAGACAAGATTTAGGCGCG 59.366 40.000 0.00 0.00 0.00 6.86
634 636 7.421530 TTCATAATAGACAAGATTTAGGCGC 57.578 36.000 0.00 0.00 0.00 6.53
671 673 8.826710 CGTCATAGATTAGAAGGCACAATTAAA 58.173 33.333 0.00 0.00 0.00 1.52
672 674 7.441157 CCGTCATAGATTAGAAGGCACAATTAA 59.559 37.037 0.00 0.00 0.00 1.40
673 675 6.929049 CCGTCATAGATTAGAAGGCACAATTA 59.071 38.462 0.00 0.00 0.00 1.40
674 676 5.760253 CCGTCATAGATTAGAAGGCACAATT 59.240 40.000 0.00 0.00 0.00 2.32
675 677 5.070446 TCCGTCATAGATTAGAAGGCACAAT 59.930 40.000 0.00 0.00 34.05 2.71
676 678 4.404394 TCCGTCATAGATTAGAAGGCACAA 59.596 41.667 0.00 0.00 34.05 3.33
677 679 3.958147 TCCGTCATAGATTAGAAGGCACA 59.042 43.478 0.00 0.00 34.05 4.57
678 680 4.551388 CTCCGTCATAGATTAGAAGGCAC 58.449 47.826 0.00 0.00 34.05 5.01
679 681 3.574396 CCTCCGTCATAGATTAGAAGGCA 59.426 47.826 0.00 0.00 34.05 4.75
680 682 3.056465 CCCTCCGTCATAGATTAGAAGGC 60.056 52.174 0.00 0.00 34.05 4.35
681 683 4.408276 TCCCTCCGTCATAGATTAGAAGG 58.592 47.826 0.00 0.00 35.14 3.46
682 684 5.074115 ACTCCCTCCGTCATAGATTAGAAG 58.926 45.833 0.00 0.00 0.00 2.85
683 685 5.063017 ACTCCCTCCGTCATAGATTAGAA 57.937 43.478 0.00 0.00 0.00 2.10
684 686 4.726035 ACTCCCTCCGTCATAGATTAGA 57.274 45.455 0.00 0.00 0.00 2.10
685 687 6.896021 TTTACTCCCTCCGTCATAGATTAG 57.104 41.667 0.00 0.00 0.00 1.73
686 688 6.267014 CCTTTTACTCCCTCCGTCATAGATTA 59.733 42.308 0.00 0.00 0.00 1.75
687 689 5.070580 CCTTTTACTCCCTCCGTCATAGATT 59.929 44.000 0.00 0.00 0.00 2.40
688 690 4.589374 CCTTTTACTCCCTCCGTCATAGAT 59.411 45.833 0.00 0.00 0.00 1.98
689 691 3.958798 CCTTTTACTCCCTCCGTCATAGA 59.041 47.826 0.00 0.00 0.00 1.98
690 692 3.705072 ACCTTTTACTCCCTCCGTCATAG 59.295 47.826 0.00 0.00 0.00 2.23
691 693 3.716431 ACCTTTTACTCCCTCCGTCATA 58.284 45.455 0.00 0.00 0.00 2.15
692 694 2.547990 ACCTTTTACTCCCTCCGTCAT 58.452 47.619 0.00 0.00 0.00 3.06
693 695 2.019807 ACCTTTTACTCCCTCCGTCA 57.980 50.000 0.00 0.00 0.00 4.35
694 696 3.413846 AAACCTTTTACTCCCTCCGTC 57.586 47.619 0.00 0.00 0.00 4.79
695 697 3.136992 TGAAAACCTTTTACTCCCTCCGT 59.863 43.478 0.00 0.00 0.00 4.69
696 698 3.501062 GTGAAAACCTTTTACTCCCTCCG 59.499 47.826 0.00 0.00 0.00 4.63
697 699 3.825014 GGTGAAAACCTTTTACTCCCTCC 59.175 47.826 0.00 0.00 0.00 4.30
698 700 4.726583 AGGTGAAAACCTTTTACTCCCTC 58.273 43.478 0.00 0.00 36.56 4.30
699 701 4.726583 GAGGTGAAAACCTTTTACTCCCT 58.273 43.478 0.00 0.00 40.86 4.20
700 702 3.501062 CGAGGTGAAAACCTTTTACTCCC 59.499 47.826 0.00 0.00 40.86 4.30
701 703 4.383173 TCGAGGTGAAAACCTTTTACTCC 58.617 43.478 0.00 0.00 40.86 3.85
702 704 5.699458 TCATCGAGGTGAAAACCTTTTACTC 59.301 40.000 0.00 0.00 40.86 2.59
703 705 5.617252 TCATCGAGGTGAAAACCTTTTACT 58.383 37.500 0.00 0.00 40.86 2.24
704 706 5.106673 CCTCATCGAGGTGAAAACCTTTTAC 60.107 44.000 0.00 0.00 44.25 2.01
705 707 5.001232 CCTCATCGAGGTGAAAACCTTTTA 58.999 41.667 0.00 0.00 44.25 1.52
755 757 5.067954 TGAGACTTGGATGCAATGATATGG 58.932 41.667 0.00 0.00 0.00 2.74
905 908 2.289840 GCCAATTGTGGGAGGCAAT 58.710 52.632 4.43 0.00 46.09 3.56
990 996 1.070445 CCGATCCATCTGGTGCTCC 59.930 63.158 0.00 0.00 36.34 4.70
1114 1120 4.069232 CGAAGACCAGAGGCGGCA 62.069 66.667 13.08 0.00 0.00 5.69
1137 1143 2.165301 GGTCGCCAGAATCGAACGG 61.165 63.158 0.00 0.00 37.73 4.44
1145 1151 2.038269 GCGGAAATGGTCGCCAGAA 61.038 57.895 4.90 0.00 45.42 3.02
1343 1349 3.704231 ATGTGCGGACCATGGGAGC 62.704 63.158 18.09 17.93 0.00 4.70
1345 1351 2.271821 CATGTGCGGACCATGGGA 59.728 61.111 18.09 0.00 36.81 4.37
1431 1438 1.632589 AACAAATCCAAGACCCAGGC 58.367 50.000 0.00 0.00 0.00 4.85
1432 1439 4.407365 ACTAAACAAATCCAAGACCCAGG 58.593 43.478 0.00 0.00 0.00 4.45
1435 1442 5.007682 TGCTACTAAACAAATCCAAGACCC 58.992 41.667 0.00 0.00 0.00 4.46
1546 1553 4.939509 AACCAAATATCCGACGACAAAG 57.060 40.909 0.00 0.00 0.00 2.77
1555 1562 7.216973 AGCTAGTACTCTAACCAAATATCCG 57.783 40.000 0.00 0.00 0.00 4.18
1600 1611 2.674177 CGTCACTCAACCACCACCTATC 60.674 54.545 0.00 0.00 0.00 2.08
1656 1667 4.459390 ACATATGCCACACGTTACTGTA 57.541 40.909 1.58 0.00 0.00 2.74
1658 1669 3.241963 CGAACATATGCCACACGTTACTG 60.242 47.826 1.58 0.00 0.00 2.74
1659 1670 2.927477 CGAACATATGCCACACGTTACT 59.073 45.455 1.58 0.00 0.00 2.24
1660 1671 2.029970 CCGAACATATGCCACACGTTAC 59.970 50.000 1.58 0.00 0.00 2.50
1661 1672 2.272678 CCGAACATATGCCACACGTTA 58.727 47.619 1.58 0.00 0.00 3.18
1664 1675 1.089481 AGCCGAACATATGCCACACG 61.089 55.000 1.58 2.05 0.00 4.49
1668 1679 1.093972 CACAAGCCGAACATATGCCA 58.906 50.000 1.58 0.00 0.00 4.92
1669 1680 1.378531 TCACAAGCCGAACATATGCC 58.621 50.000 1.58 0.00 0.00 4.40
1670 1681 3.698029 AATCACAAGCCGAACATATGC 57.302 42.857 1.58 0.00 0.00 3.14
1711 1723 4.590222 ACAAGTTTAAGGACCTTACTCCGA 59.410 41.667 13.76 0.00 35.20 4.55
1739 1751 4.898829 TGAACCTCAATTGACACACTTG 57.101 40.909 3.38 0.00 0.00 3.16
1754 1766 7.838079 TGCTAATTAAATATGGCATGAACCT 57.162 32.000 10.98 0.00 0.00 3.50
1943 2007 1.876849 ATCCAGTGCACCTCTCTCAT 58.123 50.000 14.63 0.00 0.00 2.90
1952 2016 1.438651 TACTTGCGAATCCAGTGCAC 58.561 50.000 9.40 9.40 38.55 4.57
1957 2021 6.842163 ACACTAAAATTACTTGCGAATCCAG 58.158 36.000 0.00 0.00 0.00 3.86
2016 2080 7.695618 CCTTTTGTTTTTCATGATTGCGAAAAA 59.304 29.630 0.00 6.06 44.58 1.94
2175 2251 5.188434 CAGGATCCAGCTCATTTTTACAGA 58.812 41.667 15.82 0.00 0.00 3.41
2176 2252 4.337555 CCAGGATCCAGCTCATTTTTACAG 59.662 45.833 15.82 0.00 0.00 2.74
2177 2253 4.018506 TCCAGGATCCAGCTCATTTTTACA 60.019 41.667 15.82 0.00 0.00 2.41
2224 2300 8.153221 TCCCCTATAGTTTACTGTTTCATTCA 57.847 34.615 0.00 0.00 0.00 2.57
2349 2425 4.015872 TCTCGAAAAGGCAATACCACTT 57.984 40.909 0.00 0.00 43.14 3.16
2350 2426 3.695830 TCTCGAAAAGGCAATACCACT 57.304 42.857 0.00 0.00 43.14 4.00
2351 2427 4.759516 TTTCTCGAAAAGGCAATACCAC 57.240 40.909 0.00 0.00 43.14 4.16
2352 2428 5.776173 TTTTTCTCGAAAAGGCAATACCA 57.224 34.783 5.15 0.00 43.14 3.25
2374 2450 9.691362 CTATGTTGCAAATACCACTTAGTTTTT 57.309 29.630 0.00 0.00 0.00 1.94
2375 2451 9.073475 TCTATGTTGCAAATACCACTTAGTTTT 57.927 29.630 0.00 0.00 0.00 2.43
2376 2452 8.630054 TCTATGTTGCAAATACCACTTAGTTT 57.370 30.769 0.00 0.00 0.00 2.66
2377 2453 8.630054 TTCTATGTTGCAAATACCACTTAGTT 57.370 30.769 0.00 0.00 0.00 2.24
2378 2454 7.336931 CCTTCTATGTTGCAAATACCACTTAGT 59.663 37.037 0.00 0.00 0.00 2.24
2379 2455 7.552687 TCCTTCTATGTTGCAAATACCACTTAG 59.447 37.037 0.00 0.65 0.00 2.18
2380 2456 7.398829 TCCTTCTATGTTGCAAATACCACTTA 58.601 34.615 0.00 0.00 0.00 2.24
2406 2482 9.573133 CTGACCCTTGTTCAATATGTAAATTTC 57.427 33.333 0.00 0.00 0.00 2.17
2772 2849 4.042809 TGACAGAAAAAGATGCCTCCCTTA 59.957 41.667 0.00 0.00 0.00 2.69
2874 2952 4.634991 CGATTGCGTTTAGTAAACCTGTC 58.365 43.478 17.99 10.93 38.14 3.51
3021 3099 5.172934 TGACGTTTGCGGTCTTCTATATTT 58.827 37.500 0.00 0.00 43.45 1.40
3024 3102 3.853831 TGACGTTTGCGGTCTTCTATA 57.146 42.857 0.00 0.00 43.45 1.31
3111 3189 5.392703 GCTGTTCATGCTCAAATCTGATGAA 60.393 40.000 0.00 0.00 29.61 2.57
3175 3261 6.998673 GCTGGTATACTGGTGGATAAAAGAAT 59.001 38.462 2.25 0.00 0.00 2.40
3182 3268 2.244695 CGGCTGGTATACTGGTGGATA 58.755 52.381 2.25 0.00 0.00 2.59
3202 3288 0.179045 ATATTGGAGCAGCACCGTCC 60.179 55.000 4.22 0.00 0.00 4.79
3263 3349 1.138859 TCCGTATGAACCATCAGGCAG 59.861 52.381 0.00 0.00 39.39 4.85
3325 3411 3.366476 GGCGATATTGCTCGACTATGTCT 60.366 47.826 14.65 0.00 43.45 3.41
3334 3420 0.234106 CAGCTTGGCGATATTGCTCG 59.766 55.000 14.65 4.89 41.54 5.03
3390 3476 4.630111 TGGATGCAAAGGTTTGTGAATTC 58.370 39.130 0.00 0.00 40.24 2.17
3427 3513 2.108157 AGTGTGTTTCCGCTCGCA 59.892 55.556 0.00 0.00 0.00 5.10
3428 3514 2.244651 ACAGTGTGTTTCCGCTCGC 61.245 57.895 0.00 0.00 0.00 5.03
3453 3539 7.574779 CGCAGTTCATCTCTATATCAGCTTACT 60.575 40.741 0.00 0.00 0.00 2.24
3481 3567 0.107214 GATGCCATCGAAACCTGGGA 60.107 55.000 4.99 2.19 37.27 4.37
3797 3883 3.830192 CCGTAGGCCGCGTACCTT 61.830 66.667 21.36 7.68 46.14 3.50
4166 4252 6.217900 TGACCTTATTCCCCCAAATACACTTA 59.782 38.462 0.00 0.00 0.00 2.24
4179 4265 2.928116 GCGCGTATATGACCTTATTCCC 59.072 50.000 8.43 0.00 0.00 3.97
4181 4267 4.625742 ACATGCGCGTATATGACCTTATTC 59.374 41.667 21.07 0.00 0.00 1.75
4216 4302 5.010516 CCATCTCTGTTCTCCGATCACTAAT 59.989 44.000 0.00 0.00 0.00 1.73
4221 4307 2.034878 CCCATCTCTGTTCTCCGATCA 58.965 52.381 0.00 0.00 0.00 2.92
4226 4312 3.077359 CACAAACCCATCTCTGTTCTCC 58.923 50.000 0.00 0.00 0.00 3.71
4227 4313 4.008074 TCACAAACCCATCTCTGTTCTC 57.992 45.455 0.00 0.00 0.00 2.87
4228 4314 4.437682 TTCACAAACCCATCTCTGTTCT 57.562 40.909 0.00 0.00 0.00 3.01
4229 4315 5.010012 ACATTTCACAAACCCATCTCTGTTC 59.990 40.000 0.00 0.00 0.00 3.18
4230 4316 4.895297 ACATTTCACAAACCCATCTCTGTT 59.105 37.500 0.00 0.00 0.00 3.16
4231 4317 4.473444 ACATTTCACAAACCCATCTCTGT 58.527 39.130 0.00 0.00 0.00 3.41
4232 4318 6.764308 ATACATTTCACAAACCCATCTCTG 57.236 37.500 0.00 0.00 0.00 3.35
4233 4319 7.451255 TCAAATACATTTCACAAACCCATCTCT 59.549 33.333 0.00 0.00 0.00 3.10
4312 4398 0.893727 AATGTTTGGACCGGAGCACC 60.894 55.000 9.46 6.63 0.00 5.01
4314 4400 0.608035 GGAATGTTTGGACCGGAGCA 60.608 55.000 9.46 0.00 0.00 4.26
4316 4402 0.036765 TCGGAATGTTTGGACCGGAG 60.037 55.000 9.46 0.00 44.57 4.63
4317 4403 0.616371 ATCGGAATGTTTGGACCGGA 59.384 50.000 9.46 0.00 44.57 5.14
4322 4408 2.710377 CAGACCATCGGAATGTTTGGA 58.290 47.619 1.74 0.00 33.36 3.53
4333 4419 1.593750 GGCTAGCAGCAGACCATCG 60.594 63.158 18.24 0.00 44.75 3.84
4335 4421 1.222936 GTGGCTAGCAGCAGACCAT 59.777 57.895 18.24 0.00 44.75 3.55
4336 4422 2.665000 GTGGCTAGCAGCAGACCA 59.335 61.111 18.24 0.00 44.75 4.02
4345 4431 2.614829 TTCTAAATCGGGTGGCTAGC 57.385 50.000 6.04 6.04 0.00 3.42
4353 4439 4.634443 ACGGTTCTCATTTTCTAAATCGGG 59.366 41.667 0.00 0.00 0.00 5.14
4377 4463 4.527816 AGGAAGACATATGGCTGAGATCTC 59.472 45.833 13.08 16.21 30.66 2.75
4388 4474 3.048600 TGGGAAGGGAGGAAGACATATG 58.951 50.000 0.00 0.00 0.00 1.78
4389 4475 3.438131 TGGGAAGGGAGGAAGACATAT 57.562 47.619 0.00 0.00 0.00 1.78
4390 4476 2.961536 TGGGAAGGGAGGAAGACATA 57.038 50.000 0.00 0.00 0.00 2.29
4391 4477 2.131023 GATGGGAAGGGAGGAAGACAT 58.869 52.381 0.00 0.00 0.00 3.06
4392 4478 1.081174 AGATGGGAAGGGAGGAAGACA 59.919 52.381 0.00 0.00 0.00 3.41
4427 4514 3.569250 TTTTCTGTTTTCTATGCCCGC 57.431 42.857 0.00 0.00 0.00 6.13
4454 4541 1.886542 GGAGCGTGTGAATCCCTTTTT 59.113 47.619 0.00 0.00 0.00 1.94
4455 4542 1.534729 GGAGCGTGTGAATCCCTTTT 58.465 50.000 0.00 0.00 0.00 2.27
4476 4563 4.892965 GGTGGTGGTGTGCCTGCA 62.893 66.667 0.00 0.00 35.27 4.41
4548 4635 5.151297 TGTGATGCAATCTCAGTAGACAA 57.849 39.130 0.00 0.00 45.81 3.18
4553 4648 4.284829 TGGTTGTGATGCAATCTCAGTA 57.715 40.909 0.00 0.00 46.14 2.74
4554 4649 3.144657 TGGTTGTGATGCAATCTCAGT 57.855 42.857 0.00 0.00 46.14 3.41
4575 4670 5.163663 GGTGAATCACGCCTAAAATCAATGA 60.164 40.000 7.35 0.00 44.93 2.57
4591 4686 1.164411 GTTGCGTCCATGGTGAATCA 58.836 50.000 12.58 1.41 0.00 2.57
4619 4714 4.498520 CGCGCTGGATCTGACCGT 62.499 66.667 5.56 0.00 0.00 4.83
4638 4733 0.855598 ATGTAGCAATGATGGCCCCT 59.144 50.000 0.00 0.00 0.00 4.79
4753 4848 9.193806 ACCTTATAATGATTTGCTTCAACTGAT 57.806 29.630 0.00 0.00 0.00 2.90
4756 4851 9.860898 GAAACCTTATAATGATTTGCTTCAACT 57.139 29.630 0.00 0.00 0.00 3.16
4796 4892 2.061028 GCTTGATTTTGCTGGAAACGG 58.939 47.619 0.00 0.00 40.79 4.44
4858 4954 8.466798 AGTGTTTATTTTTGCTGAAACTAGTGT 58.533 29.630 0.00 0.00 33.81 3.55
4867 4963 5.538053 TGGATCCAGTGTTTATTTTTGCTGA 59.462 36.000 11.44 0.00 0.00 4.26
4882 4978 4.922206 TGAGTTATTTTGCTGGATCCAGT 58.078 39.130 36.32 22.15 45.24 4.00
4887 4983 4.463891 CCCTGTTGAGTTATTTTGCTGGAT 59.536 41.667 0.00 0.00 0.00 3.41
4956 5053 6.817765 TTTATTGGAACTAGCCTTTCTGTG 57.182 37.500 0.00 0.00 0.00 3.66
4958 5055 7.657336 TGTTTTTATTGGAACTAGCCTTTCTG 58.343 34.615 0.00 0.00 0.00 3.02
4975 5072 8.630054 TTGCTGGAACTAGTGTATGTTTTTAT 57.370 30.769 0.00 0.00 0.00 1.40
4976 5073 8.453238 TTTGCTGGAACTAGTGTATGTTTTTA 57.547 30.769 0.00 0.00 0.00 1.52
4990 5087 2.354821 GACGAGTGTTTTTGCTGGAACT 59.645 45.455 0.00 0.00 0.00 3.01
5024 5121 1.665735 CGATTTGCTGGAACCAAACGG 60.666 52.381 0.00 0.00 35.27 4.44
5026 5123 1.269517 TGCGATTTGCTGGAACCAAAC 60.270 47.619 0.00 0.00 46.63 2.93
5047 5144 2.725811 TTTTTGCTGCCATCGACCA 58.274 47.368 0.00 0.00 0.00 4.02
5073 5170 2.025037 AGCCATCTATTTGCTGGAACCA 60.025 45.455 0.00 0.00 33.99 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.