Multiple sequence alignment - TraesCS7A01G412100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G412100 chr7A 100.000 4507 0 0 1 4507 603022811 603027317 0.000000e+00 8323.0
1 TraesCS7A01G412100 chr7A 98.644 885 12 0 3623 4507 603033470 603034354 0.000000e+00 1568.0
2 TraesCS7A01G412100 chr7A 86.941 827 86 10 2566 3390 603944645 603943839 0.000000e+00 909.0
3 TraesCS7A01G412100 chr7A 86.545 825 105 4 2569 3390 603959663 603958842 0.000000e+00 904.0
4 TraesCS7A01G412100 chr7A 85.669 628 76 10 1779 2394 603960348 603959723 0.000000e+00 649.0
5 TraesCS7A01G412100 chr7A 81.051 628 92 9 1775 2394 603945307 603944699 4.080000e-130 475.0
6 TraesCS7A01G412100 chr7A 90.588 255 24 0 1423 1677 603960769 603960515 5.580000e-89 339.0
7 TraesCS7A01G412100 chr7A 89.712 243 24 1 1432 1673 603945571 603945329 4.380000e-80 309.0
8 TraesCS7A01G412100 chr7A 92.667 150 7 4 2403 2550 462339185 462339332 3.530000e-51 213.0
9 TraesCS7A01G412100 chr7A 82.203 118 17 1 1039 1152 603961151 603961034 1.030000e-16 99.0
10 TraesCS7A01G412100 chr2A 98.083 887 15 2 3623 4507 165852940 165853826 0.000000e+00 1543.0
11 TraesCS7A01G412100 chr5A 97.971 887 16 2 3623 4507 414130609 414131495 0.000000e+00 1537.0
12 TraesCS7A01G412100 chr5A 97.966 885 17 1 3623 4507 438763843 438762960 0.000000e+00 1533.0
13 TraesCS7A01G412100 chr5A 97.545 896 19 3 3615 4507 414123562 414124457 0.000000e+00 1530.0
14 TraesCS7A01G412100 chr1A 97.971 887 16 2 3623 4507 26708765 26709651 0.000000e+00 1537.0
15 TraesCS7A01G412100 chr1A 94.444 54 1 2 3519 3571 511621843 511621895 1.040000e-11 82.4
16 TraesCS7A01G412100 chr3A 97.971 887 14 4 3623 4507 639412184 639413068 0.000000e+00 1535.0
17 TraesCS7A01G412100 chr3A 97.966 885 18 0 3623 4507 643401133 643402017 0.000000e+00 1535.0
18 TraesCS7A01G412100 chrUn 97.858 887 17 2 3623 4507 399939814 399940700 0.000000e+00 1531.0
19 TraesCS7A01G412100 chrUn 79.221 385 34 19 317 682 30967902 30967545 4.540000e-55 226.0
20 TraesCS7A01G412100 chr7B 94.037 872 50 2 2541 3411 556688215 556689085 0.000000e+00 1321.0
21 TraesCS7A01G412100 chr7B 94.036 788 47 0 971 1758 556686668 556687455 0.000000e+00 1195.0
22 TraesCS7A01G412100 chr7B 95.440 636 29 0 1759 2394 556687550 556688185 0.000000e+00 1014.0
23 TraesCS7A01G412100 chr7B 87.062 827 85 12 2566 3390 558364504 558363698 0.000000e+00 915.0
24 TraesCS7A01G412100 chr7B 88.172 744 77 7 1 737 556684708 556685447 0.000000e+00 876.0
25 TraesCS7A01G412100 chr7B 84.615 832 126 2 2560 3390 558323881 558323051 0.000000e+00 826.0
26 TraesCS7A01G412100 chr7B 81.089 973 141 23 1444 2394 558365502 558364551 0.000000e+00 737.0
27 TraesCS7A01G412100 chr7B 88.417 259 30 0 1415 1673 558642453 558642195 3.380000e-81 313.0
28 TraesCS7A01G412100 chr7B 95.105 143 6 1 2392 2533 489146912 489146770 1.630000e-54 224.0
29 TraesCS7A01G412100 chr7B 88.991 109 12 0 3485 3593 556689116 556689224 7.860000e-28 135.0
30 TraesCS7A01G412100 chr7B 80.488 164 30 2 1492 1654 558324999 558324837 1.700000e-24 124.0
31 TraesCS7A01G412100 chr7B 92.727 55 3 1 3519 3572 656318885 656318831 1.340000e-10 78.7
32 TraesCS7A01G412100 chr7B 100.000 34 0 0 929 962 556686602 556686635 3.760000e-06 63.9
33 TraesCS7A01G412100 chr7D 93.452 840 52 3 2532 3370 522873400 522874237 0.000000e+00 1243.0
34 TraesCS7A01G412100 chr7D 94.811 636 33 0 1759 2394 522872736 522873371 0.000000e+00 992.0
35 TraesCS7A01G412100 chr7D 87.124 831 101 4 2563 3390 523438021 523438848 0.000000e+00 937.0
36 TraesCS7A01G412100 chr7D 86.699 827 88 12 2566 3390 523276632 523275826 0.000000e+00 898.0
37 TraesCS7A01G412100 chr7D 89.045 712 65 9 30 737 522870761 522871463 0.000000e+00 870.0
38 TraesCS7A01G412100 chr7D 85.611 827 115 4 2566 3390 523269155 523268331 0.000000e+00 865.0
39 TraesCS7A01G412100 chr7D 86.159 643 77 7 1759 2391 523437324 523437964 0.000000e+00 684.0
40 TraesCS7A01G412100 chr7D 86.907 611 62 6 2780 3390 523486879 523487471 0.000000e+00 669.0
41 TraesCS7A01G412100 chr7D 95.238 378 18 0 964 1341 522871911 522872288 2.320000e-167 599.0
42 TraesCS7A01G412100 chr7D 83.646 587 73 7 1812 2394 523277254 523276687 8.580000e-147 531.0
43 TraesCS7A01G412100 chr7D 92.284 324 22 1 1438 1758 522872311 522872634 1.480000e-124 457.0
44 TraesCS7A01G412100 chr7D 84.290 331 35 8 1442 1757 523436922 523437250 1.570000e-79 307.0
45 TraesCS7A01G412100 chr7D 87.854 247 30 0 1429 1675 523277565 523277319 1.590000e-74 291.0
46 TraesCS7A01G412100 chr7D 87.295 244 31 0 1426 1669 523486197 523486440 3.430000e-71 279.0
47 TraesCS7A01G412100 chr7D 92.053 151 8 2 3360 3509 522879699 522879846 4.570000e-50 209.0
48 TraesCS7A01G412100 chr7D 79.670 182 37 0 1492 1673 523270641 523270460 1.020000e-26 132.0
49 TraesCS7A01G412100 chr5B 95.105 143 5 2 2393 2535 626068686 626068826 1.630000e-54 224.0
50 TraesCS7A01G412100 chr4B 96.296 135 5 0 2400 2534 59201956 59202090 5.870000e-54 222.0
51 TraesCS7A01G412100 chr4A 96.970 132 4 0 2402 2533 585099227 585099096 5.870000e-54 222.0
52 TraesCS7A01G412100 chr4A 95.070 142 6 1 2397 2537 589667302 589667161 5.870000e-54 222.0
53 TraesCS7A01G412100 chr5D 95.035 141 6 1 2398 2537 76220050 76219910 2.110000e-53 220.0
54 TraesCS7A01G412100 chr5D 90.476 42 4 0 3527 3568 434010322 434010363 6.300000e-04 56.5
55 TraesCS7A01G412100 chr1B 94.964 139 7 0 2394 2532 56893226 56893364 7.590000e-53 219.0
56 TraesCS7A01G412100 chr1B 93.333 45 3 0 3524 3568 645248023 645247979 2.910000e-07 67.6
57 TraesCS7A01G412100 chr6B 92.617 149 10 1 2394 2541 612317268 612317120 3.530000e-51 213.0
58 TraesCS7A01G412100 chr2D 80.000 335 26 16 317 650 648384166 648384460 4.570000e-50 209.0
59 TraesCS7A01G412100 chr3D 93.750 48 3 0 3519 3566 553750590 553750543 6.250000e-09 73.1
60 TraesCS7A01G412100 chr2B 91.667 48 3 1 3524 3570 52711826 52711779 1.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G412100 chr7A 603022811 603027317 4506 False 8323.000000 8323 100.000000 1 4507 1 chr7A.!!$F2 4506
1 TraesCS7A01G412100 chr7A 603033470 603034354 884 False 1568.000000 1568 98.644000 3623 4507 1 chr7A.!!$F3 884
2 TraesCS7A01G412100 chr7A 603943839 603945571 1732 True 564.333333 909 85.901333 1432 3390 3 chr7A.!!$R1 1958
3 TraesCS7A01G412100 chr7A 603958842 603961151 2309 True 497.750000 904 86.251250 1039 3390 4 chr7A.!!$R2 2351
4 TraesCS7A01G412100 chr2A 165852940 165853826 886 False 1543.000000 1543 98.083000 3623 4507 1 chr2A.!!$F1 884
5 TraesCS7A01G412100 chr5A 414130609 414131495 886 False 1537.000000 1537 97.971000 3623 4507 1 chr5A.!!$F2 884
6 TraesCS7A01G412100 chr5A 438762960 438763843 883 True 1533.000000 1533 97.966000 3623 4507 1 chr5A.!!$R1 884
7 TraesCS7A01G412100 chr5A 414123562 414124457 895 False 1530.000000 1530 97.545000 3615 4507 1 chr5A.!!$F1 892
8 TraesCS7A01G412100 chr1A 26708765 26709651 886 False 1537.000000 1537 97.971000 3623 4507 1 chr1A.!!$F1 884
9 TraesCS7A01G412100 chr3A 639412184 639413068 884 False 1535.000000 1535 97.971000 3623 4507 1 chr3A.!!$F1 884
10 TraesCS7A01G412100 chr3A 643401133 643402017 884 False 1535.000000 1535 97.966000 3623 4507 1 chr3A.!!$F2 884
11 TraesCS7A01G412100 chrUn 399939814 399940700 886 False 1531.000000 1531 97.858000 3623 4507 1 chrUn.!!$F1 884
12 TraesCS7A01G412100 chr7B 558363698 558365502 1804 True 826.000000 915 84.075500 1444 3390 2 chr7B.!!$R5 1946
13 TraesCS7A01G412100 chr7B 556684708 556689224 4516 False 767.483333 1321 93.446000 1 3593 6 chr7B.!!$F1 3592
14 TraesCS7A01G412100 chr7B 558323051 558324999 1948 True 475.000000 826 82.551500 1492 3390 2 chr7B.!!$R4 1898
15 TraesCS7A01G412100 chr7D 522870761 522874237 3476 False 832.200000 1243 92.966000 30 3370 5 chr7D.!!$F2 3340
16 TraesCS7A01G412100 chr7D 523436922 523438848 1926 False 642.666667 937 85.857667 1442 3390 3 chr7D.!!$F3 1948
17 TraesCS7A01G412100 chr7D 523275826 523277565 1739 True 573.333333 898 86.066333 1429 3390 3 chr7D.!!$R2 1961
18 TraesCS7A01G412100 chr7D 523268331 523270641 2310 True 498.500000 865 82.640500 1492 3390 2 chr7D.!!$R1 1898
19 TraesCS7A01G412100 chr7D 523486197 523487471 1274 False 474.000000 669 87.101000 1426 3390 2 chr7D.!!$F4 1964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 181 0.034089 GCCCTCACTATGTGCCCTTT 60.034 55.0 0.00 0.00 32.98 3.11 F
897 1205 0.306533 CGTTTATAGCGGCGCCATTT 59.693 50.0 30.40 13.01 0.00 2.32 F
1697 2999 0.029834 CAACCACTCTGCACAGCAAC 59.970 55.0 0.00 0.00 38.41 4.17 F
2349 4002 0.318762 AAGAGGACCTCGCAGTTCAC 59.681 55.0 15.97 0.00 35.36 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 2895 0.790993 ACCTTCCCCAGTAGGAGTCA 59.209 55.000 0.00 0.0 37.20 3.41 R
2507 4160 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
2510 4163 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 R
3607 5675 1.606313 AACATTGGGGCCTCCGTTG 60.606 57.895 0.00 5.5 38.76 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 5.355910 GTCACTATCCTTCTTCTTCGAGTCT 59.644 44.000 0.00 0.00 0.00 3.24
70 71 1.063070 TCCCCAACACAAGGTAGGCA 61.063 55.000 0.00 0.00 0.00 4.75
128 130 2.507992 CCTCTCGCTTGCAGACGG 60.508 66.667 10.10 2.56 0.00 4.79
129 131 3.184683 CTCTCGCTTGCAGACGGC 61.185 66.667 10.10 0.00 45.13 5.68
159 161 1.734465 CCAGATTCGTTGTCAAGCTCC 59.266 52.381 0.00 0.00 0.00 4.70
164 166 2.032681 GTTGTCAAGCTCCGCCCT 59.967 61.111 0.00 0.00 0.00 5.19
175 177 2.203070 CCGCCCTCACTATGTGCC 60.203 66.667 0.00 0.00 32.98 5.01
179 181 0.034089 GCCCTCACTATGTGCCCTTT 60.034 55.000 0.00 0.00 32.98 3.11
211 213 1.499368 TATGAGGCTGCACCATCTCA 58.501 50.000 0.50 4.96 43.14 3.27
212 214 0.844660 ATGAGGCTGCACCATCTCAT 59.155 50.000 11.10 11.10 43.14 2.90
218 220 1.575244 CTGCACCATCTCATGTACGG 58.425 55.000 0.00 0.00 0.00 4.02
226 228 3.205338 CATCTCATGTACGGCAATCCAA 58.795 45.455 0.00 0.00 0.00 3.53
236 238 0.738389 GGCAATCCAATGGTGGTACG 59.262 55.000 0.00 0.00 46.11 3.67
239 241 2.939640 GCAATCCAATGGTGGTACGTCT 60.940 50.000 0.00 0.00 46.11 4.18
249 251 0.324091 TGGTACGTCTTCCCCCTCTC 60.324 60.000 0.00 0.00 0.00 3.20
251 253 1.553706 GTACGTCTTCCCCCTCTCAA 58.446 55.000 0.00 0.00 0.00 3.02
262 264 1.344114 CCCCTCTCAAGATCTAGCAGC 59.656 57.143 0.00 0.00 0.00 5.25
265 267 2.694628 CCTCTCAAGATCTAGCAGCAGT 59.305 50.000 0.00 0.00 0.00 4.40
297 299 2.117423 TCGGTGGTGAGCTCCTCA 59.883 61.111 12.15 6.63 38.25 3.86
308 310 1.905894 GAGCTCCTCACTTCCTTTCCT 59.094 52.381 0.87 0.00 0.00 3.36
312 314 3.867984 GCTCCTCACTTCCTTTCCTTCTG 60.868 52.174 0.00 0.00 0.00 3.02
314 316 3.973973 TCCTCACTTCCTTTCCTTCTGAA 59.026 43.478 0.00 0.00 0.00 3.02
315 317 4.412199 TCCTCACTTCCTTTCCTTCTGAAA 59.588 41.667 0.00 0.00 40.64 2.69
326 328 4.771114 TCCTTCTGAAACTCAGGTTCAA 57.229 40.909 6.60 0.00 44.39 2.69
332 334 3.879295 CTGAAACTCAGGTTCAAGCTCAA 59.121 43.478 6.60 0.00 40.71 3.02
359 361 2.849880 TTTTGCAGTGCTCTGTTGTC 57.150 45.000 17.60 1.41 43.05 3.18
364 366 1.807755 GCAGTGCTCTGTTGTCAGTGA 60.808 52.381 16.59 0.00 43.05 3.41
400 402 6.000219 ACTTAATGGTGAGGCATGATGATAC 59.000 40.000 0.00 0.00 0.00 2.24
401 403 2.531522 TGGTGAGGCATGATGATACG 57.468 50.000 0.00 0.00 0.00 3.06
437 440 1.609072 GGAAACTCACAAGGCTTGTCC 59.391 52.381 29.07 21.35 43.23 4.02
458 464 8.997621 TGTCCTTGTTAACATAGACTACAATC 57.002 34.615 26.29 9.75 32.61 2.67
595 603 9.053840 AGGTAGTCTTTTTAGTTAAGTTGCTTC 57.946 33.333 0.00 0.00 0.00 3.86
598 606 7.418408 AGTCTTTTTAGTTAAGTTGCTTCAGC 58.582 34.615 0.00 0.00 42.50 4.26
617 625 4.828939 TCAGCATGAACCTTGAAAGAATGT 59.171 37.500 0.00 0.00 45.97 2.71
667 675 9.406828 GGTTAACATGTATTTCCTTTCTGTTTC 57.593 33.333 8.10 0.00 0.00 2.78
668 676 9.959749 GTTAACATGTATTTCCTTTCTGTTTCA 57.040 29.630 0.00 0.00 0.00 2.69
671 679 8.006298 ACATGTATTTCCTTTCTGTTTCACAA 57.994 30.769 0.00 0.00 0.00 3.33
673 681 8.918658 CATGTATTTCCTTTCTGTTTCACAATG 58.081 33.333 0.00 0.00 0.00 2.82
687 695 8.429493 TGTTTCACAATGTTGCATTTATTGAA 57.571 26.923 18.95 8.42 36.09 2.69
690 698 9.932699 TTTCACAATGTTGCATTTATTGAAAAG 57.067 25.926 18.95 9.65 36.09 2.27
732 740 7.760131 AAGTTTCACAGTGAAATGACATTTG 57.240 32.000 27.57 7.05 46.55 2.32
771 915 3.305094 GCTTCCGCAAATGTCATTTCATG 59.695 43.478 7.87 0.00 35.78 3.07
775 919 3.244345 CCGCAAATGTCATTTCATGATGC 59.756 43.478 7.87 7.57 42.04 3.91
787 931 8.928733 GTCATTTCATGATGCAAATTTACAAGT 58.071 29.630 0.00 0.00 42.04 3.16
792 936 8.969121 TCATGATGCAAATTTACAAGTACTTG 57.031 30.769 29.76 29.76 45.58 3.16
797 941 9.243637 GATGCAAATTTACAAGTACTTGAAACA 57.756 29.630 36.14 23.36 42.93 2.83
823 968 4.686191 TCAATGTTTTCCACCAAGCAAT 57.314 36.364 0.00 0.00 0.00 3.56
841 986 9.738832 CCAAGCAATTTCAGAATTTTCATTTTT 57.261 25.926 0.00 0.00 33.25 1.94
844 989 9.940166 AGCAATTTCAGAATTTTCATTTTTGTC 57.060 25.926 0.00 0.00 33.25 3.18
846 991 9.372541 CAATTTCAGAATTTTCATTTTTGTCGG 57.627 29.630 0.00 0.00 33.25 4.79
862 1007 5.873179 TTGTCGGAATTTACTGTTCATCC 57.127 39.130 0.00 0.00 0.00 3.51
869 1014 6.349300 GGAATTTACTGTTCATCCTGAGCTA 58.651 40.000 0.00 0.00 0.00 3.32
892 1200 2.162371 TTTTTCGTTTATAGCGGCGC 57.838 45.000 26.86 26.86 0.00 6.53
896 1204 0.531090 TCGTTTATAGCGGCGCCATT 60.531 50.000 30.40 16.36 0.00 3.16
897 1205 0.306533 CGTTTATAGCGGCGCCATTT 59.693 50.000 30.40 13.01 0.00 2.32
898 1206 1.268335 CGTTTATAGCGGCGCCATTTT 60.268 47.619 30.40 12.57 0.00 1.82
900 1208 0.584396 TTATAGCGGCGCCATTTTCG 59.416 50.000 30.40 12.52 0.00 3.46
901 1209 0.531090 TATAGCGGCGCCATTTTCGT 60.531 50.000 30.40 10.03 0.00 3.85
902 1210 1.373590 ATAGCGGCGCCATTTTCGTT 61.374 50.000 30.40 11.71 0.00 3.85
903 1211 1.579084 TAGCGGCGCCATTTTCGTTT 61.579 50.000 30.40 8.35 0.00 3.60
904 1212 1.154188 GCGGCGCCATTTTCGTTTA 60.154 52.632 28.98 0.00 0.00 2.01
905 1213 0.524604 GCGGCGCCATTTTCGTTTAT 60.525 50.000 28.98 0.00 0.00 1.40
906 1214 1.268133 GCGGCGCCATTTTCGTTTATA 60.268 47.619 28.98 0.00 0.00 0.98
907 1215 2.791849 GCGGCGCCATTTTCGTTTATAA 60.792 45.455 28.98 0.00 0.00 0.98
908 1216 3.427243 CGGCGCCATTTTCGTTTATAAA 58.573 40.909 28.98 0.00 0.00 1.40
909 1217 3.852536 CGGCGCCATTTTCGTTTATAAAA 59.147 39.130 28.98 0.00 0.00 1.52
910 1218 4.323868 CGGCGCCATTTTCGTTTATAAAAA 59.676 37.500 28.98 0.00 30.20 1.94
911 1219 5.497911 CGGCGCCATTTTCGTTTATAAAAAG 60.498 40.000 28.98 0.00 30.20 2.27
912 1220 5.245105 GCGCCATTTTCGTTTATAAAAAGC 58.755 37.500 0.00 0.00 30.20 3.51
913 1221 5.722863 GCGCCATTTTCGTTTATAAAAAGCC 60.723 40.000 0.00 0.00 30.98 4.35
914 1222 5.497911 CGCCATTTTCGTTTATAAAAAGCCG 60.498 40.000 0.00 0.00 30.98 5.52
915 1223 5.573669 GCCATTTTCGTTTATAAAAAGCCGA 59.426 36.000 0.00 2.16 30.20 5.54
916 1224 6.254804 GCCATTTTCGTTTATAAAAAGCCGAT 59.745 34.615 8.81 0.00 30.20 4.18
917 1225 7.608755 CCATTTTCGTTTATAAAAAGCCGATG 58.391 34.615 8.81 5.67 30.20 3.84
918 1226 7.253950 CCATTTTCGTTTATAAAAAGCCGATGG 60.254 37.037 8.81 9.63 30.20 3.51
919 1227 5.883503 TTCGTTTATAAAAAGCCGATGGT 57.116 34.783 8.81 0.00 0.00 3.55
920 1228 5.224562 TCGTTTATAAAAAGCCGATGGTG 57.775 39.130 0.00 0.00 0.00 4.17
921 1229 4.936411 TCGTTTATAAAAAGCCGATGGTGA 59.064 37.500 0.00 0.00 0.00 4.02
922 1230 5.587043 TCGTTTATAAAAAGCCGATGGTGAT 59.413 36.000 0.00 0.00 0.00 3.06
923 1231 6.094325 TCGTTTATAAAAAGCCGATGGTGATT 59.906 34.615 0.00 0.00 0.00 2.57
924 1232 6.196353 CGTTTATAAAAAGCCGATGGTGATTG 59.804 38.462 0.00 0.00 0.00 2.67
925 1233 2.368655 AAAAAGCCGATGGTGATTGC 57.631 45.000 0.00 0.00 0.00 3.56
926 1234 1.549203 AAAAGCCGATGGTGATTGCT 58.451 45.000 0.00 0.00 0.00 3.91
1037 2283 2.837371 GAACGGTCCCAAGCTCTCGG 62.837 65.000 0.00 0.00 0.00 4.63
1086 2332 3.077556 CTGCTCTACCGCCCACCT 61.078 66.667 0.00 0.00 0.00 4.00
1148 2398 8.591312 GTGATAAACTCTTTTCTCTCTGATTCG 58.409 37.037 0.00 0.00 0.00 3.34
1310 2597 1.944676 CGCGCAGTCCTCGGTAATC 60.945 63.158 8.75 0.00 0.00 1.75
1324 2611 6.383147 TCCTCGGTAATCTATTTCTTGTTCCT 59.617 38.462 0.00 0.00 0.00 3.36
1325 2612 6.480320 CCTCGGTAATCTATTTCTTGTTCCTG 59.520 42.308 0.00 0.00 0.00 3.86
1336 2623 5.673337 TTCTTGTTCCTGTTGAGATTTCG 57.327 39.130 0.00 0.00 0.00 3.46
1341 2628 0.721718 CCTGTTGAGATTTCGACGGC 59.278 55.000 6.90 0.00 41.14 5.68
1343 2630 2.002586 CTGTTGAGATTTCGACGGCAT 58.997 47.619 0.00 0.00 40.10 4.40
1344 2631 3.186909 CTGTTGAGATTTCGACGGCATA 58.813 45.455 0.00 0.00 40.10 3.14
1348 2635 5.123186 TGTTGAGATTTCGACGGCATAAAAT 59.877 36.000 0.00 0.00 40.10 1.82
1354 2641 6.984474 AGATTTCGACGGCATAAAATTCTCTA 59.016 34.615 0.00 0.00 0.00 2.43
1379 2666 2.435372 TTCACCTGTTCTTGGCAACT 57.565 45.000 0.00 0.00 37.61 3.16
1697 2999 0.029834 CAACCACTCTGCACAGCAAC 59.970 55.000 0.00 0.00 38.41 4.17
1704 3006 2.554032 ACTCTGCACAGCAACCAATAAC 59.446 45.455 0.00 0.00 38.41 1.89
1711 3013 3.189287 CACAGCAACCAATAACCACTCTC 59.811 47.826 0.00 0.00 0.00 3.20
1742 3044 6.135454 AGTCTGAATCTCTATGTCATGTCCT 58.865 40.000 0.00 0.00 0.00 3.85
1753 3055 2.028112 TGTCATGTCCTAGTGGAGCAAC 60.028 50.000 0.00 0.00 44.16 4.17
1807 3444 4.038271 AGATTGTGAGAATTTGGCCTCA 57.962 40.909 3.32 0.00 37.11 3.86
1808 3445 4.410099 AGATTGTGAGAATTTGGCCTCAA 58.590 39.130 3.32 0.00 40.64 3.02
1810 3447 6.189859 AGATTGTGAGAATTTGGCCTCAATA 58.810 36.000 3.32 0.00 40.64 1.90
1848 3489 3.397439 ATGGCAGCACTCTCGGCT 61.397 61.111 0.00 0.00 43.77 5.52
1925 3569 0.393944 ATCGTGTCGGCTCAGGAGTA 60.394 55.000 0.00 0.00 36.05 2.59
2142 3786 4.501714 CGTTACGGCTGGGCGCTA 62.502 66.667 16.06 5.77 39.13 4.26
2196 3840 1.796796 GCTTTCATGCCTGGTCGTC 59.203 57.895 0.00 0.00 0.00 4.20
2287 3931 1.285950 GCCGTGAGAAAGTTTGGCC 59.714 57.895 0.00 0.00 36.51 5.36
2326 3970 2.013058 GCTCTCTTCTCTACGACCCGT 61.013 57.143 0.00 0.00 44.35 5.28
2334 3978 0.679002 TCTACGACCCGTGGGAAGAG 60.679 60.000 13.01 3.46 41.39 2.85
2349 4002 0.318762 AAGAGGACCTCGCAGTTCAC 59.681 55.000 15.97 0.00 35.36 3.18
2361 4014 1.741732 GCAGTTCACAGGATCGAGCAT 60.742 52.381 1.84 0.00 0.00 3.79
2385 4038 2.873133 CTGATCTCCGGTCAGTTACC 57.127 55.000 11.48 0.00 45.77 2.85
2400 4053 5.531287 GTCAGTTACCACAATCCTGTTTTCT 59.469 40.000 0.00 0.00 31.64 2.52
2401 4054 6.039382 GTCAGTTACCACAATCCTGTTTTCTT 59.961 38.462 0.00 0.00 31.64 2.52
2404 4057 7.012894 CAGTTACCACAATCCTGTTTTCTTGTA 59.987 37.037 0.00 0.00 31.64 2.41
2405 4058 5.767816 ACCACAATCCTGTTTTCTTGTAC 57.232 39.130 0.00 0.00 31.64 2.90
2407 4060 5.891551 ACCACAATCCTGTTTTCTTGTACTT 59.108 36.000 0.00 0.00 31.64 2.24
2409 4062 6.438763 CACAATCCTGTTTTCTTGTACTTCC 58.561 40.000 0.00 0.00 31.64 3.46
2411 4064 6.486993 ACAATCCTGTTTTCTTGTACTTCCTC 59.513 38.462 0.00 0.00 28.57 3.71
2412 4065 4.969484 TCCTGTTTTCTTGTACTTCCTCC 58.031 43.478 0.00 0.00 0.00 4.30
2413 4066 3.746492 CCTGTTTTCTTGTACTTCCTCCG 59.254 47.826 0.00 0.00 0.00 4.63
2416 4069 3.672767 TTTCTTGTACTTCCTCCGTCC 57.327 47.619 0.00 0.00 0.00 4.79
2418 4071 1.171308 CTTGTACTTCCTCCGTCCGA 58.829 55.000 0.00 0.00 0.00 4.55
2419 4072 1.542915 CTTGTACTTCCTCCGTCCGAA 59.457 52.381 0.00 0.00 0.00 4.30
2420 4073 1.619654 TGTACTTCCTCCGTCCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
2421 4074 1.962807 TGTACTTCCTCCGTCCGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
2424 4077 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
2427 4080 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
2428 4081 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
2430 4083 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2431 4084 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2432 4085 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2433 4086 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2434 4087 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2435 4088 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2436 4089 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2437 4090 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2438 4091 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2439 4092 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
2440 4093 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
2441 4094 8.638565 CCGAAAATACTTGTCATCAAAATGAAC 58.361 33.333 0.00 0.00 43.42 3.18
2442 4095 9.179552 CGAAAATACTTGTCATCAAAATGAACA 57.820 29.630 0.00 0.00 43.42 3.18
2448 4101 8.200364 ACTTGTCATCAAAATGAACAAAAAGG 57.800 30.769 0.87 0.00 43.42 3.11
2449 4102 7.280652 ACTTGTCATCAAAATGAACAAAAAGGG 59.719 33.333 0.87 0.00 43.42 3.95
2450 4103 6.882656 TGTCATCAAAATGAACAAAAAGGGA 58.117 32.000 0.00 0.00 43.42 4.20
2451 4104 7.507829 TGTCATCAAAATGAACAAAAAGGGAT 58.492 30.769 0.00 0.00 43.42 3.85
2452 4105 7.441760 TGTCATCAAAATGAACAAAAAGGGATG 59.558 33.333 0.00 0.00 43.42 3.51
2453 4106 7.442062 GTCATCAAAATGAACAAAAAGGGATGT 59.558 33.333 0.00 0.00 43.42 3.06
2454 4107 8.646004 TCATCAAAATGAACAAAAAGGGATGTA 58.354 29.630 0.00 0.00 38.97 2.29
2455 4108 9.439500 CATCAAAATGAACAAAAAGGGATGTAT 57.561 29.630 0.00 0.00 34.61 2.29
2456 4109 9.657419 ATCAAAATGAACAAAAAGGGATGTATC 57.343 29.630 0.00 0.00 0.00 2.24
2457 4110 8.869109 TCAAAATGAACAAAAAGGGATGTATCT 58.131 29.630 0.00 0.00 0.00 1.98
2460 4113 9.753674 AAATGAACAAAAAGGGATGTATCTAGA 57.246 29.630 0.00 0.00 0.00 2.43
2461 4114 9.753674 AATGAACAAAAAGGGATGTATCTAGAA 57.246 29.630 0.00 0.00 0.00 2.10
2462 4115 8.561738 TGAACAAAAAGGGATGTATCTAGAAC 57.438 34.615 0.00 0.00 0.00 3.01
2463 4116 8.383175 TGAACAAAAAGGGATGTATCTAGAACT 58.617 33.333 0.00 0.00 0.00 3.01
2464 4117 9.886132 GAACAAAAAGGGATGTATCTAGAACTA 57.114 33.333 0.00 0.00 0.00 2.24
2509 4162 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2516 4169 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2517 4170 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2518 4171 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2519 4172 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2520 4173 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2521 4174 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2522 4175 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2523 4176 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2524 4177 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2525 4178 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2526 4179 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2527 4180 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2528 4181 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2529 4182 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2530 4183 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
2531 4184 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
2532 4185 1.379576 CCGGACGGAGGGAGTAGTT 60.380 63.158 4.40 0.00 37.50 2.24
2533 4186 1.664321 CCGGACGGAGGGAGTAGTTG 61.664 65.000 4.40 0.00 37.50 3.16
2534 4187 1.516423 GGACGGAGGGAGTAGTTGC 59.484 63.158 0.00 0.00 0.00 4.17
2535 4188 0.971447 GGACGGAGGGAGTAGTTGCT 60.971 60.000 0.00 0.00 0.00 3.91
2538 4588 1.275573 ACGGAGGGAGTAGTTGCTTTC 59.724 52.381 0.00 0.00 0.00 2.62
2551 4601 2.679355 TGCTTTCGTCAAATTCACCG 57.321 45.000 0.00 0.00 0.00 4.94
2552 4602 1.944024 TGCTTTCGTCAAATTCACCGT 59.056 42.857 0.00 0.00 0.00 4.83
2575 4625 2.660189 ATACAAATGTGCTGCTTGCC 57.340 45.000 0.00 0.00 42.00 4.52
2605 4655 3.223710 TTCGACAAGGCCGCCGTTA 62.224 57.895 3.05 0.00 0.00 3.18
2853 4903 1.442769 CGTCCATGTCCACCTTTGAG 58.557 55.000 0.00 0.00 0.00 3.02
2943 4993 0.692419 GGAGGGAGAAGGGCATCTCA 60.692 60.000 17.79 0.00 46.24 3.27
2962 5012 2.134287 GGGCTGCAGAGGATCGGTA 61.134 63.158 20.43 0.00 42.67 4.02
3015 5065 4.007940 GCGGCGCTTGTCGAAACA 62.008 61.111 26.86 0.00 45.47 2.83
3027 5077 2.357034 GAAACAGCACGCCTCCGA 60.357 61.111 0.00 0.00 38.29 4.55
3049 5099 3.036084 CAAAGTCGTCGCCGCTGT 61.036 61.111 0.00 0.00 0.00 4.40
3063 5131 1.738099 GCTGTCACCGAATGCGACT 60.738 57.895 0.00 0.00 40.82 4.18
3406 5474 7.335924 CGAGGTACAAGGAAAAGAATCCAATAA 59.664 37.037 0.00 0.00 42.27 1.40
3407 5475 8.581253 AGGTACAAGGAAAAGAATCCAATAAG 57.419 34.615 0.00 0.00 42.27 1.73
3408 5476 8.390921 AGGTACAAGGAAAAGAATCCAATAAGA 58.609 33.333 0.00 0.00 42.27 2.10
3409 5477 8.459635 GGTACAAGGAAAAGAATCCAATAAGAC 58.540 37.037 0.00 0.00 42.27 3.01
3410 5478 7.468141 ACAAGGAAAAGAATCCAATAAGACC 57.532 36.000 0.00 0.00 42.27 3.85
3411 5479 7.241628 ACAAGGAAAAGAATCCAATAAGACCT 58.758 34.615 0.00 0.00 42.27 3.85
3412 5480 7.177392 ACAAGGAAAAGAATCCAATAAGACCTG 59.823 37.037 0.00 0.00 42.27 4.00
3413 5481 6.190587 AGGAAAAGAATCCAATAAGACCTGG 58.809 40.000 0.00 0.00 42.27 4.45
3414 5482 5.952347 GGAAAAGAATCCAATAAGACCTGGT 59.048 40.000 0.00 0.00 39.42 4.00
3415 5483 6.095580 GGAAAAGAATCCAATAAGACCTGGTC 59.904 42.308 19.20 19.20 39.42 4.02
3416 5484 6.394345 AAAGAATCCAATAAGACCTGGTCT 57.606 37.500 23.49 23.49 45.64 3.85
3427 5495 4.479786 AGACCTGGTCTTATTTCTGAGC 57.520 45.455 23.49 0.00 40.28 4.26
3428 5496 3.840666 AGACCTGGTCTTATTTCTGAGCA 59.159 43.478 23.49 0.00 40.28 4.26
3429 5497 4.287067 AGACCTGGTCTTATTTCTGAGCAA 59.713 41.667 23.49 0.00 40.28 3.91
3430 5498 4.583871 ACCTGGTCTTATTTCTGAGCAAG 58.416 43.478 0.00 0.00 39.67 4.01
3431 5499 4.042187 ACCTGGTCTTATTTCTGAGCAAGT 59.958 41.667 0.00 0.00 39.67 3.16
3432 5500 4.394300 CCTGGTCTTATTTCTGAGCAAGTG 59.606 45.833 0.00 0.00 39.67 3.16
3454 5522 4.756642 TGAGACCATGTTGACAACAATCTC 59.243 41.667 30.68 30.68 45.86 2.75
3468 5536 5.182001 ACAACAATCTCAAAGCACCATAGTC 59.818 40.000 0.00 0.00 0.00 2.59
3469 5537 5.171339 ACAATCTCAAAGCACCATAGTCT 57.829 39.130 0.00 0.00 0.00 3.24
3470 5538 5.564550 ACAATCTCAAAGCACCATAGTCTT 58.435 37.500 0.00 0.00 0.00 3.01
3471 5539 5.645497 ACAATCTCAAAGCACCATAGTCTTC 59.355 40.000 0.00 0.00 0.00 2.87
3472 5540 5.690464 ATCTCAAAGCACCATAGTCTTCT 57.310 39.130 0.00 0.00 0.00 2.85
3473 5541 5.489792 TCTCAAAGCACCATAGTCTTCTT 57.510 39.130 0.00 0.00 0.00 2.52
3474 5542 5.240891 TCTCAAAGCACCATAGTCTTCTTG 58.759 41.667 0.00 0.00 0.00 3.02
3475 5543 3.753272 TCAAAGCACCATAGTCTTCTTGC 59.247 43.478 0.00 0.00 0.00 4.01
3476 5544 3.710209 AAGCACCATAGTCTTCTTGCT 57.290 42.857 0.00 0.00 42.03 3.91
3477 5545 3.258971 AGCACCATAGTCTTCTTGCTC 57.741 47.619 0.00 0.00 35.39 4.26
3478 5546 1.929836 GCACCATAGTCTTCTTGCTCG 59.070 52.381 0.00 0.00 0.00 5.03
3479 5547 2.417379 GCACCATAGTCTTCTTGCTCGA 60.417 50.000 0.00 0.00 0.00 4.04
3480 5548 3.739519 GCACCATAGTCTTCTTGCTCGAT 60.740 47.826 0.00 0.00 0.00 3.59
3481 5549 4.437239 CACCATAGTCTTCTTGCTCGATT 58.563 43.478 0.00 0.00 0.00 3.34
3482 5550 4.872691 CACCATAGTCTTCTTGCTCGATTT 59.127 41.667 0.00 0.00 0.00 2.17
3483 5551 4.872691 ACCATAGTCTTCTTGCTCGATTTG 59.127 41.667 0.00 0.00 0.00 2.32
3512 5580 9.054922 ACATTTTGCAGTTAATTTAGTTTGCAT 57.945 25.926 10.40 0.00 40.72 3.96
3555 5623 6.988622 AAAACGATTTACATTATGGGACGA 57.011 33.333 0.00 0.00 0.00 4.20
3565 5633 2.832643 TATGGGACGAAGGGAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
3572 5640 3.259902 GACGAAGGGAGTACATGTTTCC 58.740 50.000 16.77 16.77 0.00 3.13
3580 5648 4.628766 GGGAGTACATGTTTCCGTACTTTC 59.371 45.833 17.84 6.51 46.36 2.62
3587 5655 0.986527 TTTCCGTACTTTCCCCTCCC 59.013 55.000 0.00 0.00 0.00 4.30
3593 5661 2.465010 TACTTTCCCCTCCCGAGCCA 62.465 60.000 0.00 0.00 0.00 4.75
3594 5662 3.327404 TTTCCCCTCCCGAGCCAC 61.327 66.667 0.00 0.00 0.00 5.01
3595 5663 3.864983 TTTCCCCTCCCGAGCCACT 62.865 63.158 0.00 0.00 0.00 4.00
3596 5664 4.779733 TCCCCTCCCGAGCCACTC 62.780 72.222 0.00 0.00 0.00 3.51
3755 5823 9.851686 ATACATGTGTGAATAATAGACACCAAT 57.148 29.630 9.11 0.00 39.43 3.16
4109 6179 2.738846 CAAGACTGGGATTTGTCACTCG 59.261 50.000 0.00 0.00 35.81 4.18
4287 6357 4.750098 CGAATCTCGGGCAAGTAACATATT 59.250 41.667 0.00 0.00 36.00 1.28
4374 6444 2.031870 CATCGTGGAGTATGTGGGAGA 58.968 52.381 0.00 0.00 0.00 3.71
4478 6548 3.256631 GGGTCTACACACTTAAGGTTCGA 59.743 47.826 7.53 0.00 0.00 3.71
4493 6563 0.459585 TTCGATGACGCTAGGGTTGC 60.460 55.000 14.33 2.80 39.58 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.885325 GGAGACTCGAAGAAGAAGGATAGT 59.115 45.833 0.00 0.00 34.09 2.12
28 29 5.130350 AGGAGACTCGAAGAAGAAGGATAG 58.870 45.833 0.00 0.00 32.90 2.08
48 49 1.358152 CTACCTTGTGTTGGGGAGGA 58.642 55.000 0.00 0.00 33.47 3.71
70 71 3.708563 CCATTATTGGCGAATTTCGGT 57.291 42.857 19.53 0.00 40.84 4.69
91 92 2.434331 CTCAAAGGGGGCGGTTCA 59.566 61.111 0.00 0.00 0.00 3.18
128 130 4.814294 AATCTGGACCGCCGTCGC 62.814 66.667 0.00 0.00 40.17 5.19
129 131 2.582498 GAATCTGGACCGCCGTCG 60.582 66.667 0.00 0.00 40.17 5.12
130 132 2.582498 CGAATCTGGACCGCCGTC 60.582 66.667 0.00 0.00 38.38 4.79
131 133 2.939261 AACGAATCTGGACCGCCGT 61.939 57.895 0.00 0.00 36.79 5.68
132 134 2.125673 AACGAATCTGGACCGCCG 60.126 61.111 0.00 0.00 36.79 6.46
134 136 0.669318 TGACAACGAATCTGGACCGC 60.669 55.000 0.00 0.00 0.00 5.68
135 137 1.726791 CTTGACAACGAATCTGGACCG 59.273 52.381 0.00 0.00 0.00 4.79
159 161 2.203070 GGGCACATAGTGAGGGCG 60.203 66.667 0.58 0.00 35.23 6.13
175 177 4.325119 CTCATATGAGGAGGATGCAAAGG 58.675 47.826 22.89 0.00 38.48 3.11
199 201 1.575244 CCGTACATGAGATGGTGCAG 58.425 55.000 0.00 0.00 33.60 4.41
204 206 2.146342 GGATTGCCGTACATGAGATGG 58.854 52.381 0.00 2.81 33.60 3.51
211 213 2.023673 CACCATTGGATTGCCGTACAT 58.976 47.619 10.37 0.00 36.79 2.29
212 214 1.458398 CACCATTGGATTGCCGTACA 58.542 50.000 10.37 0.00 36.79 2.90
226 228 2.293877 GGGGAAGACGTACCACCAT 58.706 57.895 7.92 0.00 0.00 3.55
236 238 2.758130 AGATCTTGAGAGGGGGAAGAC 58.242 52.381 0.00 0.00 0.00 3.01
239 241 2.023015 TGCTAGATCTTGAGAGGGGGAA 60.023 50.000 8.45 0.00 0.00 3.97
249 251 2.886081 ACGAACTGCTGCTAGATCTTG 58.114 47.619 0.00 0.00 0.00 3.02
251 253 2.417924 CCAACGAACTGCTGCTAGATCT 60.418 50.000 0.00 0.00 0.00 2.75
297 299 5.373812 TGAGTTTCAGAAGGAAAGGAAGT 57.626 39.130 0.00 0.00 45.76 3.01
312 314 3.251972 CCTTGAGCTTGAACCTGAGTTTC 59.748 47.826 0.00 0.00 35.94 2.78
314 316 2.173569 ACCTTGAGCTTGAACCTGAGTT 59.826 45.455 0.00 0.00 39.54 3.01
315 317 1.771255 ACCTTGAGCTTGAACCTGAGT 59.229 47.619 0.00 0.00 0.00 3.41
340 342 2.090760 TGACAACAGAGCACTGCAAAA 58.909 42.857 11.37 0.00 46.95 2.44
341 343 1.672363 CTGACAACAGAGCACTGCAAA 59.328 47.619 11.37 0.00 46.95 3.68
342 344 1.302366 CTGACAACAGAGCACTGCAA 58.698 50.000 11.37 0.00 46.95 4.08
347 349 1.939974 TGTCACTGACAACAGAGCAC 58.060 50.000 9.54 0.00 46.03 4.40
356 358 3.069289 GTCATGAGCAATGTCACTGACA 58.931 45.455 14.26 14.26 46.90 3.58
359 361 5.868043 TTAAGTCATGAGCAATGTCACTG 57.132 39.130 0.00 0.00 37.56 3.66
364 366 5.255687 TCACCATTAAGTCATGAGCAATGT 58.744 37.500 16.68 7.52 37.56 2.71
400 402 4.396166 AGTTTCCTTTGTCAATCATAGGCG 59.604 41.667 0.00 0.00 42.42 5.52
401 403 5.415701 TGAGTTTCCTTTGTCAATCATAGGC 59.584 40.000 0.00 0.00 42.42 3.93
595 603 4.921515 CACATTCTTTCAAGGTTCATGCTG 59.078 41.667 0.00 0.00 0.00 4.41
598 606 6.979817 TCAAACACATTCTTTCAAGGTTCATG 59.020 34.615 0.00 0.00 0.00 3.07
617 625 3.317711 CACATACAAGTTGGCCTCAAACA 59.682 43.478 3.32 0.00 34.28 2.83
667 675 8.336806 ACACTTTTCAATAAATGCAACATTGTG 58.663 29.630 14.35 9.53 32.64 3.33
668 676 8.436046 ACACTTTTCAATAAATGCAACATTGT 57.564 26.923 14.35 0.00 32.64 2.71
671 679 8.436046 ACAACACTTTTCAATAAATGCAACAT 57.564 26.923 0.00 0.00 0.00 2.71
673 681 7.904094 TGACAACACTTTTCAATAAATGCAAC 58.096 30.769 0.00 0.00 0.00 4.17
771 915 9.243637 TGTTTCAAGTACTTGTAAATTTGCATC 57.756 29.630 29.83 15.11 41.16 3.91
797 941 6.767456 TGCTTGGTGGAAAACATTGATAAAT 58.233 32.000 0.00 0.00 0.00 1.40
805 949 5.033589 TGAAATTGCTTGGTGGAAAACAT 57.966 34.783 0.00 0.00 0.00 2.71
819 964 8.885108 CGACAAAAATGAAAATTCTGAAATTGC 58.115 29.630 0.00 0.00 35.27 3.56
823 968 8.709386 TTCCGACAAAAATGAAAATTCTGAAA 57.291 26.923 0.00 0.00 0.00 2.69
841 986 4.935205 CAGGATGAACAGTAAATTCCGACA 59.065 41.667 0.00 0.00 39.69 4.35
883 1191 1.373590 AACGAAAATGGCGCCGCTAT 61.374 50.000 23.90 5.27 0.00 2.97
892 1200 7.253950 CCATCGGCTTTTTATAAACGAAAATGG 60.254 37.037 11.25 10.71 33.86 3.16
896 1204 6.072618 TCACCATCGGCTTTTTATAAACGAAA 60.073 34.615 11.25 0.00 33.86 3.46
897 1205 5.411977 TCACCATCGGCTTTTTATAAACGAA 59.588 36.000 11.25 0.00 33.86 3.85
898 1206 4.936411 TCACCATCGGCTTTTTATAAACGA 59.064 37.500 10.04 10.04 34.70 3.85
900 1208 6.019881 GCAATCACCATCGGCTTTTTATAAAC 60.020 38.462 0.00 0.00 0.00 2.01
901 1209 6.039616 GCAATCACCATCGGCTTTTTATAAA 58.960 36.000 0.00 0.00 0.00 1.40
902 1210 5.359576 AGCAATCACCATCGGCTTTTTATAA 59.640 36.000 0.00 0.00 0.00 0.98
903 1211 4.887071 AGCAATCACCATCGGCTTTTTATA 59.113 37.500 0.00 0.00 0.00 0.98
904 1212 3.701040 AGCAATCACCATCGGCTTTTTAT 59.299 39.130 0.00 0.00 0.00 1.40
905 1213 3.088532 AGCAATCACCATCGGCTTTTTA 58.911 40.909 0.00 0.00 0.00 1.52
906 1214 1.895131 AGCAATCACCATCGGCTTTTT 59.105 42.857 0.00 0.00 0.00 1.94
907 1215 1.549203 AGCAATCACCATCGGCTTTT 58.451 45.000 0.00 0.00 0.00 2.27
908 1216 2.418368 TAGCAATCACCATCGGCTTT 57.582 45.000 0.00 0.00 36.10 3.51
909 1217 2.418368 TTAGCAATCACCATCGGCTT 57.582 45.000 0.00 0.00 36.10 4.35
910 1218 2.092968 TCTTTAGCAATCACCATCGGCT 60.093 45.455 0.00 0.00 38.55 5.52
911 1219 2.288666 TCTTTAGCAATCACCATCGGC 58.711 47.619 0.00 0.00 0.00 5.54
912 1220 4.963276 TTTCTTTAGCAATCACCATCGG 57.037 40.909 0.00 0.00 0.00 4.18
1019 2265 2.657237 CGAGAGCTTGGGACCGTT 59.343 61.111 0.00 0.00 0.00 4.44
1148 2398 4.891756 AGACATCATCCATGGGTCAAAATC 59.108 41.667 13.02 2.40 36.72 2.17
1259 2546 1.635663 CCACCCGTGCGATTCTTCAC 61.636 60.000 0.00 0.00 0.00 3.18
1310 2597 7.959651 CGAAATCTCAACAGGAACAAGAAATAG 59.040 37.037 0.00 0.00 0.00 1.73
1324 2611 2.093306 ATGCCGTCGAAATCTCAACA 57.907 45.000 0.00 0.00 0.00 3.33
1325 2612 4.593597 TTTATGCCGTCGAAATCTCAAC 57.406 40.909 0.00 0.00 0.00 3.18
1336 2623 4.127171 TGCCTAGAGAATTTTATGCCGTC 58.873 43.478 0.00 0.00 0.00 4.79
1341 2628 8.133627 CAGGTGAATTGCCTAGAGAATTTTATG 58.866 37.037 0.00 0.00 34.45 1.90
1343 2630 7.175104 ACAGGTGAATTGCCTAGAGAATTTTA 58.825 34.615 0.00 0.00 34.45 1.52
1344 2631 6.012745 ACAGGTGAATTGCCTAGAGAATTTT 58.987 36.000 0.00 0.00 34.45 1.82
1348 2635 4.287067 AGAACAGGTGAATTGCCTAGAGAA 59.713 41.667 0.00 0.00 34.45 2.87
1354 2641 2.242043 CCAAGAACAGGTGAATTGCCT 58.758 47.619 0.00 0.00 36.66 4.75
1608 2895 0.790993 ACCTTCCCCAGTAGGAGTCA 59.209 55.000 0.00 0.00 37.20 3.41
1697 2999 2.571653 TCTGGTGGAGAGTGGTTATTGG 59.428 50.000 0.00 0.00 0.00 3.16
1711 3013 4.648762 ACATAGAGATTCAGACTCTGGTGG 59.351 45.833 6.20 0.00 43.37 4.61
1742 3044 3.230976 TCTCAACTGAGTTGCTCCACTA 58.769 45.455 19.99 0.62 42.55 2.74
1753 3055 7.488187 TCAAGTCTGAATTTTCTCAACTGAG 57.512 36.000 0.00 0.00 43.36 3.35
1807 3444 2.421811 GCATGCCCTGCCCAAAAATATT 60.422 45.455 6.36 0.00 45.66 1.28
1808 3445 1.141455 GCATGCCCTGCCCAAAAATAT 59.859 47.619 6.36 0.00 45.66 1.28
1810 3447 1.300634 GCATGCCCTGCCCAAAAAT 59.699 52.632 6.36 0.00 45.66 1.82
1848 3489 3.691342 ACGAGCAGCGGCAGGTAA 61.691 61.111 12.44 0.00 46.49 2.85
1925 3569 1.707427 AGAGGCCCAGAAACAAGATGT 59.293 47.619 0.00 0.00 0.00 3.06
2184 3828 2.815308 GATCCGACGACCAGGCAT 59.185 61.111 0.00 0.00 0.00 4.40
2326 3970 1.984570 CTGCGAGGTCCTCTTCCCA 60.985 63.158 17.00 7.58 0.00 4.37
2334 3978 1.374758 CCTGTGAACTGCGAGGTCC 60.375 63.158 0.00 0.00 28.56 4.46
2349 4002 1.683385 TCAGTGGTATGCTCGATCCTG 59.317 52.381 0.00 0.00 0.00 3.86
2361 4014 1.005569 ACTGACCGGAGATCAGTGGTA 59.994 52.381 21.71 0.00 42.37 3.25
2385 4038 6.263168 AGGAAGTACAAGAAAACAGGATTGTG 59.737 38.462 0.00 0.00 37.67 3.33
2394 4047 3.744942 GGACGGAGGAAGTACAAGAAAAC 59.255 47.826 0.00 0.00 0.00 2.43
2396 4049 2.029649 CGGACGGAGGAAGTACAAGAAA 60.030 50.000 0.00 0.00 0.00 2.52
2397 4050 1.542915 CGGACGGAGGAAGTACAAGAA 59.457 52.381 0.00 0.00 0.00 2.52
2400 4053 1.619654 TTCGGACGGAGGAAGTACAA 58.380 50.000 0.00 0.00 0.00 2.41
2401 4054 1.619654 TTTCGGACGGAGGAAGTACA 58.380 50.000 0.00 0.00 0.00 2.90
2404 4057 2.830321 AGTATTTTCGGACGGAGGAAGT 59.170 45.455 0.00 0.00 0.00 3.01
2405 4058 3.521947 AGTATTTTCGGACGGAGGAAG 57.478 47.619 0.00 0.00 0.00 3.46
2407 4060 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2409 4062 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2411 4064 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2412 4065 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2413 4066 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
2416 4069 9.179552 TGTTCATTTTGATGACAAGTATTTTCG 57.820 29.630 0.00 0.00 37.32 3.46
2424 4077 7.495279 TCCCTTTTTGTTCATTTTGATGACAAG 59.505 33.333 0.00 0.00 37.32 3.16
2427 4080 7.442062 ACATCCCTTTTTGTTCATTTTGATGAC 59.558 33.333 0.00 0.00 32.39 3.06
2428 4081 7.507829 ACATCCCTTTTTGTTCATTTTGATGA 58.492 30.769 0.00 0.00 32.39 2.92
2430 4083 9.657419 GATACATCCCTTTTTGTTCATTTTGAT 57.343 29.630 0.00 0.00 0.00 2.57
2431 4084 8.869109 AGATACATCCCTTTTTGTTCATTTTGA 58.131 29.630 0.00 0.00 0.00 2.69
2434 4087 9.753674 TCTAGATACATCCCTTTTTGTTCATTT 57.246 29.630 0.00 0.00 0.00 2.32
2435 4088 9.753674 TTCTAGATACATCCCTTTTTGTTCATT 57.246 29.630 0.00 0.00 0.00 2.57
2436 4089 9.178758 GTTCTAGATACATCCCTTTTTGTTCAT 57.821 33.333 0.00 0.00 0.00 2.57
2437 4090 8.383175 AGTTCTAGATACATCCCTTTTTGTTCA 58.617 33.333 0.00 0.00 0.00 3.18
2438 4091 8.794335 AGTTCTAGATACATCCCTTTTTGTTC 57.206 34.615 0.00 0.00 0.00 3.18
2483 4136 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
2491 4144 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2492 4145 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2493 4146 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2494 4147 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2495 4148 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2496 4149 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2497 4150 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2498 4151 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2499 4152 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2500 4153 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2501 4154 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2502 4155 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2503 4156 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2504 4157 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2505 4158 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2506 4159 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2507 4160 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2508 4161 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2509 4162 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2510 4163 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2511 4164 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2512 4165 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2513 4166 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2514 4167 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
2515 4168 1.807886 CAACTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
2516 4169 0.971447 AGCAACTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
2517 4170 0.896226 AAGCAACTACTCCCTCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
2518 4171 1.275573 GAAAGCAACTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
2519 4172 1.736032 CGAAAGCAACTACTCCCTCCG 60.736 57.143 0.00 0.00 0.00 4.63
2520 4173 1.275573 ACGAAAGCAACTACTCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
2521 4174 2.029290 TGACGAAAGCAACTACTCCCTC 60.029 50.000 0.00 0.00 0.00 4.30
2522 4175 1.968493 TGACGAAAGCAACTACTCCCT 59.032 47.619 0.00 0.00 0.00 4.20
2523 4176 2.450609 TGACGAAAGCAACTACTCCC 57.549 50.000 0.00 0.00 0.00 4.30
2524 4177 5.049680 TGAATTTGACGAAAGCAACTACTCC 60.050 40.000 0.00 0.00 0.00 3.85
2525 4178 5.846473 GTGAATTTGACGAAAGCAACTACTC 59.154 40.000 0.00 0.00 0.00 2.59
2526 4179 5.277828 GGTGAATTTGACGAAAGCAACTACT 60.278 40.000 0.00 0.00 0.00 2.57
2527 4180 4.909880 GGTGAATTTGACGAAAGCAACTAC 59.090 41.667 0.00 0.00 0.00 2.73
2528 4181 4.319190 CGGTGAATTTGACGAAAGCAACTA 60.319 41.667 0.00 0.00 0.00 2.24
2529 4182 3.548014 CGGTGAATTTGACGAAAGCAACT 60.548 43.478 0.00 0.00 0.00 3.16
2530 4183 2.719046 CGGTGAATTTGACGAAAGCAAC 59.281 45.455 0.00 0.00 0.00 4.17
2531 4184 2.356382 ACGGTGAATTTGACGAAAGCAA 59.644 40.909 0.00 0.00 0.00 3.91
2532 4185 1.944024 ACGGTGAATTTGACGAAAGCA 59.056 42.857 0.00 0.00 0.00 3.91
2533 4186 2.681152 ACGGTGAATTTGACGAAAGC 57.319 45.000 0.00 0.00 0.00 3.51
2534 4187 4.203950 TGAACGGTGAATTTGACGAAAG 57.796 40.909 0.00 0.00 0.00 2.62
2535 4188 4.617808 TTGAACGGTGAATTTGACGAAA 57.382 36.364 0.00 0.00 0.00 3.46
2538 4588 5.024768 TGTATTGAACGGTGAATTTGACG 57.975 39.130 0.00 0.00 0.00 4.35
2551 4601 4.143263 GCAAGCAGCACATTTGTATTGAAC 60.143 41.667 0.00 0.00 44.79 3.18
2552 4602 3.989167 GCAAGCAGCACATTTGTATTGAA 59.011 39.130 0.00 0.00 44.79 2.69
2575 4625 3.555139 GCCTTGTCGAAGAATCTGATCAG 59.445 47.826 17.07 17.07 39.69 2.90
2605 4655 2.436646 CTTGCCCGAAGCCACGAT 60.437 61.111 0.00 0.00 42.71 3.73
2666 4716 3.862124 GCGTCACGATGCAGAGTT 58.138 55.556 0.00 0.00 42.66 3.01
2697 4747 1.009829 GCATCCGCACGAGAATCTTT 58.990 50.000 0.00 0.00 38.36 2.52
2943 4993 2.589610 TACCGATCCTCTGCAGCCCT 62.590 60.000 9.47 0.00 0.00 5.19
3007 5057 2.668280 GGAGGCGTGCTGTTTCGAC 61.668 63.158 0.00 0.00 35.08 4.20
3049 5099 1.226575 CGCTAGTCGCATTCGGTGA 60.227 57.895 0.00 0.00 39.08 4.02
3114 5182 1.443407 CTGCCCGATGGTAGTGAGG 59.557 63.158 0.00 0.00 39.36 3.86
3307 5375 2.093973 TCCAGAAGAAGCGATCCAAGTC 60.094 50.000 0.00 0.00 0.00 3.01
3406 5474 3.840666 TGCTCAGAAATAAGACCAGGTCT 59.159 43.478 17.31 17.31 45.64 3.85
3407 5475 4.207891 TGCTCAGAAATAAGACCAGGTC 57.792 45.455 12.25 12.25 0.00 3.85
3408 5476 4.042187 ACTTGCTCAGAAATAAGACCAGGT 59.958 41.667 0.00 0.00 0.00 4.00
3409 5477 4.394300 CACTTGCTCAGAAATAAGACCAGG 59.606 45.833 0.00 0.00 0.00 4.45
3410 5478 5.240891 TCACTTGCTCAGAAATAAGACCAG 58.759 41.667 0.00 0.00 0.00 4.00
3411 5479 5.012046 TCTCACTTGCTCAGAAATAAGACCA 59.988 40.000 0.00 0.00 0.00 4.02
3412 5480 5.350091 GTCTCACTTGCTCAGAAATAAGACC 59.650 44.000 0.00 0.00 0.00 3.85
3413 5481 5.350091 GGTCTCACTTGCTCAGAAATAAGAC 59.650 44.000 0.00 0.00 0.00 3.01
3414 5482 5.012046 TGGTCTCACTTGCTCAGAAATAAGA 59.988 40.000 0.00 0.00 0.00 2.10
3415 5483 5.240891 TGGTCTCACTTGCTCAGAAATAAG 58.759 41.667 0.00 0.00 0.00 1.73
3416 5484 5.227569 TGGTCTCACTTGCTCAGAAATAA 57.772 39.130 0.00 0.00 0.00 1.40
3417 5485 4.890158 TGGTCTCACTTGCTCAGAAATA 57.110 40.909 0.00 0.00 0.00 1.40
3418 5486 3.777106 TGGTCTCACTTGCTCAGAAAT 57.223 42.857 0.00 0.00 0.00 2.17
3419 5487 3.181451 ACATGGTCTCACTTGCTCAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
3420 5488 2.369860 ACATGGTCTCACTTGCTCAGAA 59.630 45.455 0.00 0.00 0.00 3.02
3421 5489 1.973515 ACATGGTCTCACTTGCTCAGA 59.026 47.619 0.00 0.00 0.00 3.27
3422 5490 2.469274 ACATGGTCTCACTTGCTCAG 57.531 50.000 0.00 0.00 0.00 3.35
3423 5491 2.104622 TCAACATGGTCTCACTTGCTCA 59.895 45.455 0.00 0.00 0.00 4.26
3424 5492 2.481952 GTCAACATGGTCTCACTTGCTC 59.518 50.000 0.00 0.00 0.00 4.26
3425 5493 2.158769 TGTCAACATGGTCTCACTTGCT 60.159 45.455 0.00 0.00 0.00 3.91
3426 5494 2.221169 TGTCAACATGGTCTCACTTGC 58.779 47.619 0.00 0.00 0.00 4.01
3427 5495 3.627123 TGTTGTCAACATGGTCTCACTTG 59.373 43.478 14.48 0.00 36.25 3.16
3428 5496 3.884895 TGTTGTCAACATGGTCTCACTT 58.115 40.909 14.48 0.00 36.25 3.16
3429 5497 3.558931 TGTTGTCAACATGGTCTCACT 57.441 42.857 14.48 0.00 36.25 3.41
3430 5498 4.516698 AGATTGTTGTCAACATGGTCTCAC 59.483 41.667 18.83 5.40 41.79 3.51
3431 5499 4.717877 AGATTGTTGTCAACATGGTCTCA 58.282 39.130 18.83 2.97 41.79 3.27
3432 5500 4.756642 TGAGATTGTTGTCAACATGGTCTC 59.243 41.667 28.19 28.19 41.79 3.36
3454 5522 3.755378 AGCAAGAAGACTATGGTGCTTTG 59.245 43.478 0.00 0.00 39.19 2.77
3468 5536 7.253552 GCAAAATGTATCAAATCGAGCAAGAAG 60.254 37.037 0.00 0.00 0.00 2.85
3469 5537 6.527722 GCAAAATGTATCAAATCGAGCAAGAA 59.472 34.615 0.00 0.00 0.00 2.52
3470 5538 6.029607 GCAAAATGTATCAAATCGAGCAAGA 58.970 36.000 0.00 0.00 0.00 3.02
3471 5539 5.801444 TGCAAAATGTATCAAATCGAGCAAG 59.199 36.000 0.00 0.00 0.00 4.01
3472 5540 5.707931 TGCAAAATGTATCAAATCGAGCAA 58.292 33.333 0.00 0.00 0.00 3.91
3473 5541 5.106197 ACTGCAAAATGTATCAAATCGAGCA 60.106 36.000 0.00 0.00 0.00 4.26
3474 5542 5.335127 ACTGCAAAATGTATCAAATCGAGC 58.665 37.500 0.00 0.00 0.00 5.03
3475 5543 8.894409 TTAACTGCAAAATGTATCAAATCGAG 57.106 30.769 0.00 0.00 0.00 4.04
3476 5544 9.853555 AATTAACTGCAAAATGTATCAAATCGA 57.146 25.926 0.00 0.00 0.00 3.59
3535 5603 5.054477 CCTTCGTCCCATAATGTAAATCGT 58.946 41.667 0.00 0.00 0.00 3.73
3536 5604 4.451096 CCCTTCGTCCCATAATGTAAATCG 59.549 45.833 0.00 0.00 0.00 3.34
3538 5606 5.132144 ACTCCCTTCGTCCCATAATGTAAAT 59.868 40.000 0.00 0.00 0.00 1.40
3553 5621 2.268298 CGGAAACATGTACTCCCTTCG 58.732 52.381 17.27 5.86 0.00 3.79
3555 5623 3.836562 AGTACGGAAACATGTACTCCCTT 59.163 43.478 17.27 9.75 46.15 3.95
3565 5633 2.026542 GGAGGGGAAAGTACGGAAACAT 60.027 50.000 0.00 0.00 0.00 2.71
3572 5640 1.814527 CTCGGGAGGGGAAAGTACG 59.185 63.158 0.00 0.00 0.00 3.67
3606 5674 3.451894 CATTGGGGCCTCCGTTGC 61.452 66.667 0.00 0.00 38.76 4.17
3607 5675 1.606313 AACATTGGGGCCTCCGTTG 60.606 57.895 0.00 5.50 38.76 4.10
3608 5676 1.606313 CAACATTGGGGCCTCCGTT 60.606 57.895 0.00 0.00 38.76 4.44
3609 5677 2.035626 CAACATTGGGGCCTCCGT 59.964 61.111 0.00 0.00 38.76 4.69
3610 5678 2.755469 CCAACATTGGGGCCTCCG 60.755 66.667 0.00 0.00 44.70 4.63
3619 5687 5.242393 CCTCTAGGGCATATTTCCAACATTG 59.758 44.000 0.00 0.00 0.00 2.82
3620 5688 5.388654 CCTCTAGGGCATATTTCCAACATT 58.611 41.667 0.00 0.00 0.00 2.71
3621 5689 4.990526 CCTCTAGGGCATATTTCCAACAT 58.009 43.478 0.00 0.00 0.00 2.71
3755 5823 5.926580 ACTAGAGGCTTACTAGGGACATA 57.073 43.478 13.13 0.00 40.86 2.29
4109 6179 3.253677 CAGTGATACCTCTCCGTCATACC 59.746 52.174 0.00 0.00 0.00 2.73
4287 6357 5.392919 CGTATGCAATTCCCTTTGTCAATCA 60.393 40.000 0.00 0.00 0.00 2.57
4374 6444 2.443255 GGGATCTGGATACCCATGTTGT 59.557 50.000 0.39 0.00 42.59 3.32
4478 6548 1.221840 CCTGCAACCCTAGCGTCAT 59.778 57.895 0.00 0.00 33.85 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.