Multiple sequence alignment - TraesCS7A01G412000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G412000 chr7A 100.000 3697 0 0 1 3697 602985637 602989333 0.000000e+00 6828
1 TraesCS7A01G412000 chr7B 91.351 3330 141 55 15 3284 556606008 556609250 0.000000e+00 4418
2 TraesCS7A01G412000 chr7D 91.684 3283 122 64 25 3234 522808518 522811722 0.000000e+00 4410
3 TraesCS7A01G412000 chr7D 90.058 171 12 2 3088 3258 522813674 522813839 2.240000e-52 217
4 TraesCS7A01G412000 chr7D 79.705 271 42 9 3428 3689 522829863 522830129 2.270000e-42 183
5 TraesCS7A01G412000 chr7D 94.000 50 2 1 3236 3285 522811751 522811799 1.420000e-09 75
6 TraesCS7A01G412000 chr4A 94.681 94 4 1 2477 2570 646106635 646106543 1.070000e-30 145
7 TraesCS7A01G412000 chr4A 94.253 87 5 0 2481 2567 647943094 647943180 2.320000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G412000 chr7A 602985637 602989333 3696 False 6828.000000 6828 100.000 1 3697 1 chr7A.!!$F1 3696
1 TraesCS7A01G412000 chr7B 556606008 556609250 3242 False 4418.000000 4418 91.351 15 3284 1 chr7B.!!$F1 3269
2 TraesCS7A01G412000 chr7D 522808518 522813839 5321 False 1567.333333 4410 91.914 25 3285 3 chr7D.!!$F2 3260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 167 0.038618 AAATGGAAAAGGCGAACGGC 60.039 50.0 12.58 12.58 42.51 5.68 F
1020 1065 0.252284 TGAAGGTCCCTCTCCCTGTC 60.252 60.0 0.00 0.00 0.00 3.51 F
1295 1355 0.262876 TGGATAGCAGCAGGAGGAGA 59.737 55.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 1429 0.538118 TTCCCCGGATGAACTAACCG 59.462 55.000 0.73 0.00 45.24 4.44 R
2444 2531 1.144057 GTACTCGTCCATGGCCAGG 59.856 63.158 13.05 12.17 0.00 4.45 R
3293 3417 0.037232 CCTCCCAGAACGTCTTGACC 60.037 60.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.092259 AGCAACTCGATGGTTCATAGTTAAAC 59.908 38.462 0.00 0.00 30.54 2.01
44 45 7.360946 GCAACTCGATGGTTCATAGTTAAACTT 60.361 37.037 0.00 0.00 30.54 2.66
45 46 9.146984 CAACTCGATGGTTCATAGTTAAACTTA 57.853 33.333 0.00 0.00 30.54 2.24
147 152 2.421424 CTCCGGGAGCAGAAAAGAAATG 59.579 50.000 11.83 0.00 0.00 2.32
160 165 2.989422 AGAAATGGAAAAGGCGAACG 57.011 45.000 0.00 0.00 0.00 3.95
161 166 1.539827 AGAAATGGAAAAGGCGAACGG 59.460 47.619 0.00 0.00 0.00 4.44
162 167 0.038618 AAATGGAAAAGGCGAACGGC 60.039 50.000 12.58 12.58 42.51 5.68
182 187 3.072038 GGCCGGGATGGTAATAAAGTAGT 59.928 47.826 2.18 0.00 41.21 2.73
231 236 1.061799 CATTCTGCTGTTGCGTTCGC 61.062 55.000 10.34 10.34 43.34 4.70
232 237 2.498761 ATTCTGCTGTTGCGTTCGCG 62.499 55.000 12.35 0.00 43.34 5.87
297 302 3.364442 CACGAAATGCCAAGCCCA 58.636 55.556 0.00 0.00 0.00 5.36
324 329 2.431942 CGACCAGCACCACGTACC 60.432 66.667 0.00 0.00 0.00 3.34
362 367 2.937469 TGCAAGGCATGTAAAATCGG 57.063 45.000 0.00 0.00 31.71 4.18
376 383 1.194781 AATCGGTCTGGCCACTGAGT 61.195 55.000 0.00 0.00 35.08 3.41
377 384 1.892819 ATCGGTCTGGCCACTGAGTG 61.893 60.000 0.00 5.42 35.08 3.51
378 385 2.574018 CGGTCTGGCCACTGAGTGA 61.574 63.158 15.33 0.00 35.23 3.41
379 386 1.294780 GGTCTGGCCACTGAGTGAG 59.705 63.158 15.33 3.66 35.23 3.51
380 387 1.476007 GGTCTGGCCACTGAGTGAGT 61.476 60.000 15.33 0.00 35.23 3.41
381 388 0.394565 GTCTGGCCACTGAGTGAGTT 59.605 55.000 15.33 0.00 35.23 3.01
394 423 5.122396 ACTGAGTGAGTTCGCCATTAAAATC 59.878 40.000 0.00 0.00 0.00 2.17
398 427 5.352569 AGTGAGTTCGCCATTAAAATCTCAG 59.647 40.000 0.00 0.00 32.60 3.35
404 433 3.544834 CGCCATTAAAATCTCAGCTGACG 60.545 47.826 13.74 9.51 0.00 4.35
435 464 5.617252 ACCTACCAACATAAATGTATCGGG 58.383 41.667 0.00 0.00 40.80 5.14
492 521 2.277628 CGACGAGAAGCGAGCTCC 60.278 66.667 8.47 0.68 44.57 4.70
505 534 4.434685 GCTCCGGCTGAGATCTTG 57.565 61.111 10.34 0.00 44.42 3.02
619 652 4.491409 GGGAAAGCGGAGGGAGGC 62.491 72.222 0.00 0.00 0.00 4.70
620 653 4.840005 GGAAAGCGGAGGGAGGCG 62.840 72.222 0.00 0.00 0.00 5.52
740 774 5.902681 TCCAAATCATCGTCTAGTTAGTGG 58.097 41.667 0.00 0.00 0.00 4.00
755 789 9.102757 TCTAGTTAGTGGTACTAAGTTGTATCG 57.897 37.037 12.69 0.00 40.43 2.92
773 807 2.686106 TTCTCCCCGGCCACTACC 60.686 66.667 2.24 0.00 0.00 3.18
786 820 4.873129 CTACCGCCGCGCTGTGAT 62.873 66.667 14.32 0.00 0.00 3.06
824 869 6.100004 CGCCTATCTATTTGTCCATTATCGT 58.900 40.000 0.00 0.00 0.00 3.73
848 893 8.861101 CGTATCGTATCCATTTCTTAATTCCTC 58.139 37.037 0.00 0.00 0.00 3.71
876 921 3.057734 CCCCGACTTAACTAATCATCGC 58.942 50.000 0.00 0.00 0.00 4.58
877 922 3.057734 CCCGACTTAACTAATCATCGCC 58.942 50.000 0.00 0.00 0.00 5.54
878 923 2.724690 CCGACTTAACTAATCATCGCCG 59.275 50.000 0.00 0.00 0.00 6.46
879 924 2.724690 CGACTTAACTAATCATCGCCGG 59.275 50.000 0.00 0.00 0.00 6.13
880 925 2.475487 GACTTAACTAATCATCGCCGGC 59.525 50.000 19.07 19.07 0.00 6.13
881 926 2.159014 ACTTAACTAATCATCGCCGGCA 60.159 45.455 28.98 14.46 0.00 5.69
882 927 2.148916 TAACTAATCATCGCCGGCAG 57.851 50.000 28.98 19.33 0.00 4.85
883 928 0.532862 AACTAATCATCGCCGGCAGG 60.533 55.000 28.98 15.50 41.62 4.85
884 929 1.669115 CTAATCATCGCCGGCAGGG 60.669 63.158 28.98 14.75 38.20 4.45
897 942 3.851955 CAGGGCCTGCCATTGATC 58.148 61.111 22.68 0.00 37.98 2.92
921 966 1.135315 CTTGAGGAATGCGTTGCGG 59.865 57.895 4.37 0.00 0.00 5.69
930 975 2.126888 GCGTTGCGGTTGTGGATG 60.127 61.111 0.00 0.00 0.00 3.51
991 1036 2.417243 GCTCTCTCTGCTTTCTGAGGTC 60.417 54.545 0.00 0.00 38.40 3.85
1020 1065 0.252284 TGAAGGTCCCTCTCCCTGTC 60.252 60.000 0.00 0.00 0.00 3.51
1071 1116 3.092511 TCATGCAGCCTCCCCCTC 61.093 66.667 0.00 0.00 0.00 4.30
1125 1170 3.985279 TGATTGGTACGTGTTCTTCTTCG 59.015 43.478 0.00 0.00 0.00 3.79
1130 1175 1.060713 ACGTGTTCTTCTTCGATGCG 58.939 50.000 0.00 0.00 0.00 4.73
1144 1189 4.575076 TGCGTTGCATTGCATTCC 57.425 50.000 12.95 4.25 38.76 3.01
1145 1190 1.664306 TGCGTTGCATTGCATTCCA 59.336 47.368 12.95 6.83 38.76 3.53
1147 1192 0.925466 GCGTTGCATTGCATTCCATC 59.075 50.000 12.95 0.00 38.76 3.51
1148 1193 1.470285 GCGTTGCATTGCATTCCATCT 60.470 47.619 12.95 0.00 38.76 2.90
1149 1194 2.190161 CGTTGCATTGCATTCCATCTG 58.810 47.619 12.95 0.00 38.76 2.90
1153 1198 3.852286 TGCATTGCATTCCATCTGTTTC 58.148 40.909 7.38 0.00 31.71 2.78
1154 1199 2.855963 GCATTGCATTCCATCTGTTTCG 59.144 45.455 3.15 0.00 0.00 3.46
1155 1200 3.427909 GCATTGCATTCCATCTGTTTCGA 60.428 43.478 3.15 0.00 0.00 3.71
1157 1202 5.345702 CATTGCATTCCATCTGTTTCGATT 58.654 37.500 0.00 0.00 0.00 3.34
1158 1203 4.621068 TGCATTCCATCTGTTTCGATTC 57.379 40.909 0.00 0.00 0.00 2.52
1159 1204 4.009002 TGCATTCCATCTGTTTCGATTCA 58.991 39.130 0.00 0.00 0.00 2.57
1160 1205 4.641541 TGCATTCCATCTGTTTCGATTCAT 59.358 37.500 0.00 0.00 0.00 2.57
1164 1209 4.191544 TCCATCTGTTTCGATTCATGGAC 58.808 43.478 7.59 0.00 32.62 4.02
1165 1210 4.080919 TCCATCTGTTTCGATTCATGGACT 60.081 41.667 7.59 0.00 32.62 3.85
1166 1211 4.272018 CCATCTGTTTCGATTCATGGACTC 59.728 45.833 0.00 0.00 0.00 3.36
1169 1214 5.491070 TCTGTTTCGATTCATGGACTCATT 58.509 37.500 0.00 0.00 0.00 2.57
1170 1215 5.582269 TCTGTTTCGATTCATGGACTCATTC 59.418 40.000 0.00 0.00 0.00 2.67
1171 1216 5.244755 TGTTTCGATTCATGGACTCATTCA 58.755 37.500 0.00 0.00 0.00 2.57
1172 1217 5.882000 TGTTTCGATTCATGGACTCATTCAT 59.118 36.000 0.00 0.00 0.00 2.57
1173 1218 6.375174 TGTTTCGATTCATGGACTCATTCATT 59.625 34.615 0.00 0.00 0.00 2.57
1174 1219 5.996669 TCGATTCATGGACTCATTCATTG 57.003 39.130 0.00 0.00 0.00 2.82
1175 1220 4.818005 TCGATTCATGGACTCATTCATTGG 59.182 41.667 0.00 0.00 0.00 3.16
1176 1221 4.577693 CGATTCATGGACTCATTCATTGGT 59.422 41.667 0.00 0.00 0.00 3.67
1177 1222 5.277683 CGATTCATGGACTCATTCATTGGTC 60.278 44.000 0.00 0.00 0.00 4.02
1184 1242 1.262417 CTCATTCATTGGTCGCATCCG 59.738 52.381 0.00 0.00 0.00 4.18
1185 1245 1.134551 TCATTCATTGGTCGCATCCGA 60.135 47.619 0.00 0.00 42.01 4.55
1186 1246 1.670295 CATTCATTGGTCGCATCCGAA 59.330 47.619 0.00 0.00 46.34 4.30
1206 1266 0.865111 TGCGTGTTCATCGGTTCTTG 59.135 50.000 0.00 0.00 0.00 3.02
1239 1299 5.384336 TGGAGATTTGACATTGAGGTTTGA 58.616 37.500 0.00 0.00 0.00 2.69
1295 1355 0.262876 TGGATAGCAGCAGGAGGAGA 59.737 55.000 0.00 0.00 0.00 3.71
1320 1380 1.757118 TCTTCAATCTCGCAGGTAGGG 59.243 52.381 0.00 0.00 0.00 3.53
1345 1429 5.363101 TCTTCTGCTACAATGTGGATGATC 58.637 41.667 0.00 0.00 0.00 2.92
1414 1501 4.737352 GCAATGTGGATTTCTGTGTTGTGT 60.737 41.667 0.00 0.00 0.00 3.72
1415 1502 5.507149 GCAATGTGGATTTCTGTGTTGTGTA 60.507 40.000 0.00 0.00 0.00 2.90
1416 1503 6.502652 CAATGTGGATTTCTGTGTTGTGTAA 58.497 36.000 0.00 0.00 0.00 2.41
1417 1504 6.707440 ATGTGGATTTCTGTGTTGTGTAAA 57.293 33.333 0.00 0.00 0.00 2.01
1418 1505 6.707440 TGTGGATTTCTGTGTTGTGTAAAT 57.293 33.333 0.00 0.00 0.00 1.40
1469 1556 0.322975 AGGTGAGCTGCGACTTCAAT 59.677 50.000 0.00 0.00 0.00 2.57
1884 1971 4.643387 AGCAGGCGTGGTGGTTCC 62.643 66.667 10.77 0.00 31.51 3.62
2072 2159 3.869272 CGCTTCCTCATGTGGCGC 61.869 66.667 9.02 12.19 39.42 6.53
2105 2192 4.492160 GAGCACGCGATCCGGACA 62.492 66.667 15.93 0.00 42.52 4.02
2546 2633 3.111939 CTGTCGGAGCTCTACCCG 58.888 66.667 14.64 9.63 46.57 5.28
2636 2723 3.114616 CTCGGCAAGCAGGACGTG 61.115 66.667 0.00 0.00 41.04 4.49
2711 2798 2.959599 TGACACGCGCACTGACAC 60.960 61.111 5.73 0.65 0.00 3.67
2713 2800 4.865761 ACACGCGCACTGACACGT 62.866 61.111 5.73 0.00 39.78 4.49
2718 2805 2.920869 CGCACTGACACGTCACAC 59.079 61.111 0.00 0.00 35.46 3.82
2783 2876 9.132521 CATCATGTTAATCAGACCAACTTTTTC 57.867 33.333 0.00 0.00 0.00 2.29
2911 3007 8.130307 TGTTGTATGATGATTGATTGTAGTCG 57.870 34.615 0.00 0.00 0.00 4.18
2916 3012 5.273944 TGATGATTGATTGTAGTCGAGTCG 58.726 41.667 6.09 6.09 0.00 4.18
2922 3018 4.232221 TGATTGTAGTCGAGTCGTTTTCC 58.768 43.478 13.12 0.00 0.00 3.13
3009 3105 2.503331 ACGTCATGTGAGGCATCAAAA 58.497 42.857 0.92 0.00 37.14 2.44
3010 3106 2.884012 ACGTCATGTGAGGCATCAAAAA 59.116 40.909 0.92 0.00 37.14 1.94
3053 3149 4.506255 GGCGAGGGTGGGGAATGG 62.506 72.222 0.00 0.00 0.00 3.16
3123 3219 1.017177 TGTTATGTTGGTCGGCGAGC 61.017 55.000 30.23 30.23 0.00 5.03
3147 3243 3.834799 GGAGCACCTACCGGACGG 61.835 72.222 9.46 10.72 42.03 4.79
3208 3304 2.159240 GGCCGATGGTGATTTTTCTTCC 60.159 50.000 0.00 0.00 0.00 3.46
3229 3353 1.478510 ACGACAGCGATGGATCTCTTT 59.521 47.619 5.32 0.00 41.64 2.52
3284 3408 7.870954 GTCATTTTTAGTTTCAAAGGGTAAGGG 59.129 37.037 0.00 0.00 0.00 3.95
3285 3409 7.565768 TCATTTTTAGTTTCAAAGGGTAAGGGT 59.434 33.333 0.00 0.00 0.00 4.34
3286 3410 6.718522 TTTTAGTTTCAAAGGGTAAGGGTG 57.281 37.500 0.00 0.00 0.00 4.61
3289 3413 2.286365 TTCAAAGGGTAAGGGTGCTG 57.714 50.000 0.00 0.00 0.00 4.41
3290 3414 0.404040 TCAAAGGGTAAGGGTGCTGG 59.596 55.000 0.00 0.00 0.00 4.85
3291 3415 0.112412 CAAAGGGTAAGGGTGCTGGT 59.888 55.000 0.00 0.00 0.00 4.00
3292 3416 0.404426 AAAGGGTAAGGGTGCTGGTC 59.596 55.000 0.00 0.00 0.00 4.02
3293 3417 1.838073 AAGGGTAAGGGTGCTGGTCG 61.838 60.000 0.00 0.00 0.00 4.79
3294 3418 2.267961 GGTAAGGGTGCTGGTCGG 59.732 66.667 0.00 0.00 0.00 4.79
3295 3419 2.590114 GGTAAGGGTGCTGGTCGGT 61.590 63.158 0.00 0.00 0.00 4.69
3297 3421 1.534476 TAAGGGTGCTGGTCGGTCA 60.534 57.895 0.00 0.00 0.00 4.02
3299 3423 2.358737 GGGTGCTGGTCGGTCAAG 60.359 66.667 0.00 0.00 0.00 3.02
3300 3424 2.741092 GGTGCTGGTCGGTCAAGA 59.259 61.111 0.00 0.00 0.00 3.02
3302 3426 2.022129 GTGCTGGTCGGTCAAGACG 61.022 63.158 0.00 0.00 41.81 4.18
3303 3427 2.338984 GCTGGTCGGTCAAGACGT 59.661 61.111 0.00 0.00 41.81 4.34
3304 3428 1.300697 GCTGGTCGGTCAAGACGTT 60.301 57.895 0.00 0.00 41.81 3.99
3305 3429 1.282930 GCTGGTCGGTCAAGACGTTC 61.283 60.000 0.00 0.00 41.81 3.95
3306 3430 0.314302 CTGGTCGGTCAAGACGTTCT 59.686 55.000 0.00 0.00 41.81 3.01
3307 3431 0.031585 TGGTCGGTCAAGACGTTCTG 59.968 55.000 0.00 0.00 41.81 3.02
3308 3432 0.666577 GGTCGGTCAAGACGTTCTGG 60.667 60.000 0.00 0.00 41.81 3.86
3309 3433 0.666577 GTCGGTCAAGACGTTCTGGG 60.667 60.000 0.00 0.00 0.00 4.45
3311 3435 0.388649 CGGTCAAGACGTTCTGGGAG 60.389 60.000 0.00 0.00 0.00 4.30
3312 3436 0.037232 GGTCAAGACGTTCTGGGAGG 60.037 60.000 0.00 0.00 0.00 4.30
3313 3437 0.670854 GTCAAGACGTTCTGGGAGGC 60.671 60.000 0.00 0.00 0.00 4.70
3314 3438 0.832135 TCAAGACGTTCTGGGAGGCT 60.832 55.000 0.00 0.00 0.00 4.58
3315 3439 0.035458 CAAGACGTTCTGGGAGGCTT 59.965 55.000 0.00 0.00 0.00 4.35
3316 3440 0.765510 AAGACGTTCTGGGAGGCTTT 59.234 50.000 0.00 0.00 0.00 3.51
3317 3441 0.035458 AGACGTTCTGGGAGGCTTTG 59.965 55.000 0.00 0.00 0.00 2.77
3319 3443 0.535102 ACGTTCTGGGAGGCTTTGTG 60.535 55.000 0.00 0.00 0.00 3.33
3321 3445 0.895559 GTTCTGGGAGGCTTTGTGGG 60.896 60.000 0.00 0.00 0.00 4.61
3323 3447 1.001641 CTGGGAGGCTTTGTGGGAG 60.002 63.158 0.00 0.00 0.00 4.30
3324 3448 1.463214 TGGGAGGCTTTGTGGGAGA 60.463 57.895 0.00 0.00 0.00 3.71
3326 3450 1.492993 GGGAGGCTTTGTGGGAGACT 61.493 60.000 0.00 0.00 34.43 3.24
3327 3451 0.322008 GGAGGCTTTGTGGGAGACTG 60.322 60.000 0.00 0.00 31.01 3.51
3328 3452 0.687354 GAGGCTTTGTGGGAGACTGA 59.313 55.000 0.00 0.00 31.01 3.41
3329 3453 1.072331 GAGGCTTTGTGGGAGACTGAA 59.928 52.381 0.00 0.00 31.01 3.02
3330 3454 1.202818 AGGCTTTGTGGGAGACTGAAC 60.203 52.381 0.00 0.00 29.26 3.18
3331 3455 1.476833 GGCTTTGTGGGAGACTGAACA 60.477 52.381 0.00 0.00 0.00 3.18
3332 3456 2.508526 GCTTTGTGGGAGACTGAACAT 58.491 47.619 0.00 0.00 0.00 2.71
3333 3457 2.485814 GCTTTGTGGGAGACTGAACATC 59.514 50.000 0.00 0.00 0.00 3.06
3335 3459 3.855255 TTGTGGGAGACTGAACATCAA 57.145 42.857 0.00 0.00 0.00 2.57
3336 3460 4.371624 TTGTGGGAGACTGAACATCAAT 57.628 40.909 0.00 0.00 0.00 2.57
3337 3461 3.942829 TGTGGGAGACTGAACATCAATC 58.057 45.455 0.00 0.00 0.00 2.67
3338 3462 3.327464 TGTGGGAGACTGAACATCAATCA 59.673 43.478 0.00 0.00 0.00 2.57
3339 3463 3.686726 GTGGGAGACTGAACATCAATCAC 59.313 47.826 0.00 0.00 0.00 3.06
3340 3464 2.932614 GGGAGACTGAACATCAATCACG 59.067 50.000 0.00 0.00 0.00 4.35
3341 3465 3.589988 GGAGACTGAACATCAATCACGT 58.410 45.455 0.00 0.00 0.00 4.49
3342 3466 4.381612 GGGAGACTGAACATCAATCACGTA 60.382 45.833 0.00 0.00 0.00 3.57
3343 3467 4.800993 GGAGACTGAACATCAATCACGTAG 59.199 45.833 0.00 0.00 0.00 3.51
3344 3468 4.748892 AGACTGAACATCAATCACGTAGG 58.251 43.478 0.00 0.00 0.00 3.18
3345 3469 4.462834 AGACTGAACATCAATCACGTAGGA 59.537 41.667 0.00 0.00 0.00 2.94
3346 3470 4.495422 ACTGAACATCAATCACGTAGGAC 58.505 43.478 0.00 0.00 0.00 3.85
3349 3473 3.802948 ACATCAATCACGTAGGACTCC 57.197 47.619 0.00 0.00 0.00 3.85
3350 3474 2.099263 ACATCAATCACGTAGGACTCCG 59.901 50.000 0.00 0.00 0.00 4.63
3351 3475 2.118313 TCAATCACGTAGGACTCCGA 57.882 50.000 0.00 0.00 0.00 4.55
3354 3478 1.093159 ATCACGTAGGACTCCGACAC 58.907 55.000 8.84 0.00 0.00 3.67
3356 3480 1.676967 ACGTAGGACTCCGACACCC 60.677 63.158 8.84 0.00 0.00 4.61
3358 3482 2.056815 GTAGGACTCCGACACCCCC 61.057 68.421 3.55 0.00 0.00 5.40
3362 3486 1.686110 GACTCCGACACCCCCATCT 60.686 63.158 0.00 0.00 0.00 2.90
3364 3488 1.685765 CTCCGACACCCCCATCTCA 60.686 63.158 0.00 0.00 0.00 3.27
3366 3490 0.620410 TCCGACACCCCCATCTCATT 60.620 55.000 0.00 0.00 0.00 2.57
3367 3491 0.464373 CCGACACCCCCATCTCATTG 60.464 60.000 0.00 0.00 0.00 2.82
3369 3493 1.065491 CGACACCCCCATCTCATTGAA 60.065 52.381 0.00 0.00 0.00 2.69
3370 3494 2.421952 CGACACCCCCATCTCATTGAAT 60.422 50.000 0.00 0.00 0.00 2.57
3374 3498 2.861317 ACCCCCATCTCATTGAATTCCT 59.139 45.455 2.27 0.00 0.00 3.36
3375 3499 3.117360 ACCCCCATCTCATTGAATTCCTC 60.117 47.826 2.27 0.00 0.00 3.71
3377 3501 3.139770 CCCCATCTCATTGAATTCCTCCT 59.860 47.826 2.27 0.00 0.00 3.69
3378 3502 4.387211 CCCCATCTCATTGAATTCCTCCTT 60.387 45.833 2.27 0.00 0.00 3.36
3380 3504 5.301298 CCCATCTCATTGAATTCCTCCTTTC 59.699 44.000 2.27 0.00 0.00 2.62
3381 3505 5.008415 CCATCTCATTGAATTCCTCCTTTCG 59.992 44.000 2.27 0.00 0.00 3.46
3383 3507 4.019321 TCTCATTGAATTCCTCCTTTCGGT 60.019 41.667 2.27 0.00 0.00 4.69
3387 3511 5.952526 TTGAATTCCTCCTTTCGGTTTAC 57.047 39.130 2.27 0.00 0.00 2.01
3391 3515 6.548251 TGAATTCCTCCTTTCGGTTTACTTTT 59.452 34.615 2.27 0.00 0.00 2.27
3392 3516 6.971726 ATTCCTCCTTTCGGTTTACTTTTT 57.028 33.333 0.00 0.00 0.00 1.94
3394 3518 6.866010 TCCTCCTTTCGGTTTACTTTTTAC 57.134 37.500 0.00 0.00 0.00 2.01
3397 3521 7.012610 TCCTCCTTTCGGTTTACTTTTTACTTG 59.987 37.037 0.00 0.00 0.00 3.16
3398 3522 6.497437 TCCTTTCGGTTTACTTTTTACTTGC 58.503 36.000 0.00 0.00 0.00 4.01
3400 3524 6.197655 CCTTTCGGTTTACTTTTTACTTGCAC 59.802 38.462 0.00 0.00 0.00 4.57
3404 3528 5.220892 CGGTTTACTTTTTACTTGCACTCCA 60.221 40.000 0.00 0.00 0.00 3.86
3405 3529 5.975344 GGTTTACTTTTTACTTGCACTCCAC 59.025 40.000 0.00 0.00 0.00 4.02
3406 3530 5.761165 TTACTTTTTACTTGCACTCCACC 57.239 39.130 0.00 0.00 0.00 4.61
3408 3532 1.989706 TTTTACTTGCACTCCACCCC 58.010 50.000 0.00 0.00 0.00 4.95
3409 3533 0.111639 TTTACTTGCACTCCACCCCC 59.888 55.000 0.00 0.00 0.00 5.40
3417 4075 4.371231 CTCCACCCCCTCCCCCTT 62.371 72.222 0.00 0.00 0.00 3.95
3420 4078 2.692741 CACCCCCTCCCCCTTCTC 60.693 72.222 0.00 0.00 0.00 2.87
3423 4081 2.040359 CCCCTCCCCCTTCTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
3424 4082 2.652113 CCCCTCCCCCTTCTCCTCT 61.652 68.421 0.00 0.00 0.00 3.69
3427 4085 0.267356 CCTCCCCCTTCTCCTCTCAT 59.733 60.000 0.00 0.00 0.00 2.90
3435 4093 4.018960 CCCCTTCTCCTCTCATTTCTTTCA 60.019 45.833 0.00 0.00 0.00 2.69
3436 4094 5.339861 CCCCTTCTCCTCTCATTTCTTTCAT 60.340 44.000 0.00 0.00 0.00 2.57
3438 4096 6.352910 CCCTTCTCCTCTCATTTCTTTCATCT 60.353 42.308 0.00 0.00 0.00 2.90
3440 4098 5.426504 TCTCCTCTCATTTCTTTCATCTGC 58.573 41.667 0.00 0.00 0.00 4.26
3446 4104 4.410099 TCATTTCTTTCATCTGCACCCTT 58.590 39.130 0.00 0.00 0.00 3.95
3447 4105 4.460382 TCATTTCTTTCATCTGCACCCTTC 59.540 41.667 0.00 0.00 0.00 3.46
3449 4107 3.063510 TCTTTCATCTGCACCCTTCTG 57.936 47.619 0.00 0.00 0.00 3.02
3451 4109 2.479566 TTCATCTGCACCCTTCTGTC 57.520 50.000 0.00 0.00 0.00 3.51
3452 4110 0.615331 TCATCTGCACCCTTCTGTCC 59.385 55.000 0.00 0.00 0.00 4.02
3454 4112 0.842030 ATCTGCACCCTTCTGTCCCA 60.842 55.000 0.00 0.00 0.00 4.37
3455 4113 1.302832 CTGCACCCTTCTGTCCCAC 60.303 63.158 0.00 0.00 0.00 4.61
3456 4114 2.358737 GCACCCTTCTGTCCCACG 60.359 66.667 0.00 0.00 0.00 4.94
3457 4115 2.358737 CACCCTTCTGTCCCACGC 60.359 66.667 0.00 0.00 0.00 5.34
3458 4116 3.637273 ACCCTTCTGTCCCACGCC 61.637 66.667 0.00 0.00 0.00 5.68
3459 4117 4.760047 CCCTTCTGTCCCACGCCG 62.760 72.222 0.00 0.00 0.00 6.46
3460 4118 4.003788 CCTTCTGTCCCACGCCGT 62.004 66.667 0.00 0.00 0.00 5.68
3461 4119 2.432628 CTTCTGTCCCACGCCGTC 60.433 66.667 0.00 0.00 0.00 4.79
3473 4131 1.513586 CGCCGTCGTTGTACCTCTC 60.514 63.158 0.00 0.00 0.00 3.20
3475 4133 0.456312 GCCGTCGTTGTACCTCTCTG 60.456 60.000 0.00 0.00 0.00 3.35
3477 4135 1.162698 CGTCGTTGTACCTCTCTGGA 58.837 55.000 0.00 0.00 39.71 3.86
3478 4136 1.135746 CGTCGTTGTACCTCTCTGGAC 60.136 57.143 0.00 0.00 39.71 4.02
3479 4137 1.135746 GTCGTTGTACCTCTCTGGACG 60.136 57.143 0.00 0.00 39.71 4.79
3481 4139 0.108756 GTTGTACCTCTCTGGACGCC 60.109 60.000 0.00 0.00 39.71 5.68
3482 4140 0.541063 TTGTACCTCTCTGGACGCCA 60.541 55.000 0.00 0.00 39.71 5.69
3484 4142 0.386113 GTACCTCTCTGGACGCCATC 59.614 60.000 0.00 0.00 39.71 3.51
3485 4143 0.033503 TACCTCTCTGGACGCCATCA 60.034 55.000 0.00 0.00 39.71 3.07
3487 4145 1.440893 CTCTCTGGACGCCATCAGG 59.559 63.158 0.00 0.00 30.82 3.86
3488 4146 1.000359 TCTCTGGACGCCATCAGGA 60.000 57.895 0.00 0.00 36.89 3.86
3489 4147 0.614697 TCTCTGGACGCCATCAGGAA 60.615 55.000 0.00 0.00 36.89 3.36
3490 4148 0.467384 CTCTGGACGCCATCAGGAAT 59.533 55.000 0.00 0.00 36.89 3.01
3493 4151 0.982852 TGGACGCCATCAGGAATCCT 60.983 55.000 0.00 0.00 39.82 3.24
3494 4152 0.250081 GGACGCCATCAGGAATCCTC 60.250 60.000 0.00 0.00 37.44 3.71
3495 4153 0.598680 GACGCCATCAGGAATCCTCG 60.599 60.000 0.00 1.85 36.89 4.63
3496 4154 1.301244 CGCCATCAGGAATCCTCGG 60.301 63.158 0.00 1.33 36.89 4.63
3497 4155 1.748329 CGCCATCAGGAATCCTCGGA 61.748 60.000 11.92 2.77 36.89 4.55
3499 4157 0.032678 CCATCAGGAATCCTCGGACG 59.967 60.000 0.00 0.00 36.89 4.79
3533 4191 3.349006 ACGCGACTGCCTGCTTTG 61.349 61.111 15.93 0.00 38.08 2.77
3534 4192 3.349006 CGCGACTGCCTGCTTTGT 61.349 61.111 0.00 0.00 38.08 2.83
3536 4194 1.497722 GCGACTGCCTGCTTTGTAC 59.502 57.895 0.00 0.00 33.98 2.90
3537 4195 1.912371 GCGACTGCCTGCTTTGTACC 61.912 60.000 0.00 0.00 33.98 3.34
3538 4196 0.602638 CGACTGCCTGCTTTGTACCA 60.603 55.000 0.00 0.00 0.00 3.25
3539 4197 0.875059 GACTGCCTGCTTTGTACCAC 59.125 55.000 0.00 0.00 0.00 4.16
3540 4198 0.182537 ACTGCCTGCTTTGTACCACA 59.817 50.000 0.00 0.00 0.00 4.17
3541 4199 0.593128 CTGCCTGCTTTGTACCACAC 59.407 55.000 0.00 0.00 0.00 3.82
3542 4200 0.821711 TGCCTGCTTTGTACCACACC 60.822 55.000 0.00 0.00 0.00 4.16
3543 4201 1.524008 GCCTGCTTTGTACCACACCC 61.524 60.000 0.00 0.00 0.00 4.61
3544 4202 0.893727 CCTGCTTTGTACCACACCCC 60.894 60.000 0.00 0.00 0.00 4.95
3545 4203 0.110486 CTGCTTTGTACCACACCCCT 59.890 55.000 0.00 0.00 0.00 4.79
3546 4204 0.179004 TGCTTTGTACCACACCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
3547 4205 0.179001 GCTTTGTACCACACCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
3548 4206 1.892209 CTTTGTACCACACCCCTGTC 58.108 55.000 0.00 0.00 0.00 3.51
3549 4207 0.475044 TTTGTACCACACCCCTGTCC 59.525 55.000 0.00 0.00 0.00 4.02
3551 4209 1.373812 GTACCACACCCCTGTCCAC 59.626 63.158 0.00 0.00 0.00 4.02
3552 4210 1.844289 TACCACACCCCTGTCCACC 60.844 63.158 0.00 0.00 0.00 4.61
3554 4212 3.174987 CACACCCCTGTCCACCCA 61.175 66.667 0.00 0.00 0.00 4.51
3555 4213 2.854032 ACACCCCTGTCCACCCAG 60.854 66.667 0.00 0.00 0.00 4.45
3564 4222 4.500125 TCCACCCAGGAATCCCTC 57.500 61.111 0.00 0.00 45.65 4.30
3565 4223 1.797472 TCCACCCAGGAATCCCTCT 59.203 57.895 0.00 0.00 45.65 3.69
3566 4224 0.621571 TCCACCCAGGAATCCCTCTG 60.622 60.000 0.00 0.00 45.65 3.35
3567 4225 1.225704 CACCCAGGAATCCCTCTGC 59.774 63.158 0.00 0.00 42.02 4.26
3568 4226 1.229951 ACCCAGGAATCCCTCTGCA 60.230 57.895 0.00 0.00 42.02 4.41
3569 4227 1.277580 ACCCAGGAATCCCTCTGCAG 61.278 60.000 7.63 7.63 42.02 4.41
3570 4228 1.153005 CCAGGAATCCCTCTGCAGC 60.153 63.158 9.47 0.00 42.02 5.25
3571 4229 1.633915 CCAGGAATCCCTCTGCAGCT 61.634 60.000 9.47 0.00 42.02 4.24
3573 4231 1.070445 CAGGAATCCCTCTGCAGCTAG 59.930 57.143 9.47 1.54 42.02 3.42
3575 4233 1.127343 GAATCCCTCTGCAGCTAGGT 58.873 55.000 17.74 2.38 0.00 3.08
3576 4234 2.320781 GAATCCCTCTGCAGCTAGGTA 58.679 52.381 17.74 5.11 0.00 3.08
3577 4235 1.710816 ATCCCTCTGCAGCTAGGTAC 58.289 55.000 17.74 0.00 0.00 3.34
3578 4236 0.397254 TCCCTCTGCAGCTAGGTACC 60.397 60.000 17.74 2.73 0.00 3.34
3579 4237 1.403687 CCCTCTGCAGCTAGGTACCC 61.404 65.000 17.74 0.00 0.00 3.69
3580 4238 0.397816 CCTCTGCAGCTAGGTACCCT 60.398 60.000 9.47 0.00 37.71 4.34
3581 4239 1.036707 CTCTGCAGCTAGGTACCCTC 58.963 60.000 9.47 0.00 34.61 4.30
3582 4240 0.397254 TCTGCAGCTAGGTACCCTCC 60.397 60.000 9.47 0.00 34.61 4.30
3583 4241 1.739338 CTGCAGCTAGGTACCCTCCG 61.739 65.000 8.74 0.00 34.61 4.63
3584 4242 3.130227 CAGCTAGGTACCCTCCGC 58.870 66.667 8.74 6.25 34.61 5.54
3585 4243 1.756950 CAGCTAGGTACCCTCCGCA 60.757 63.158 8.74 0.00 34.16 5.69
3587 4245 2.794028 GCTAGGTACCCTCCGCACC 61.794 68.421 8.74 0.00 34.61 5.01
3588 4246 2.042639 TAGGTACCCTCCGCACCC 60.043 66.667 8.74 0.00 34.61 4.61
3589 4247 2.584873 CTAGGTACCCTCCGCACCCT 62.585 65.000 8.74 0.00 34.61 4.34
3590 4248 2.578586 TAGGTACCCTCCGCACCCTC 62.579 65.000 8.74 0.00 34.61 4.30
3591 4249 2.363925 GTACCCTCCGCACCCTCT 60.364 66.667 0.00 0.00 0.00 3.69
3592 4250 1.988406 GTACCCTCCGCACCCTCTT 60.988 63.158 0.00 0.00 0.00 2.85
3594 4252 0.685458 TACCCTCCGCACCCTCTTAC 60.685 60.000 0.00 0.00 0.00 2.34
3595 4253 1.686110 CCCTCCGCACCCTCTTACT 60.686 63.158 0.00 0.00 0.00 2.24
3596 4254 1.517832 CCTCCGCACCCTCTTACTG 59.482 63.158 0.00 0.00 0.00 2.74
3597 4255 0.970937 CCTCCGCACCCTCTTACTGA 60.971 60.000 0.00 0.00 0.00 3.41
3598 4256 1.115467 CTCCGCACCCTCTTACTGAT 58.885 55.000 0.00 0.00 0.00 2.90
3599 4257 0.824109 TCCGCACCCTCTTACTGATG 59.176 55.000 0.00 0.00 0.00 3.07
3602 4260 1.799181 CGCACCCTCTTACTGATGACG 60.799 57.143 0.00 0.00 0.00 4.35
3603 4261 1.204941 GCACCCTCTTACTGATGACGT 59.795 52.381 0.00 0.00 0.00 4.34
3605 4263 2.755655 CACCCTCTTACTGATGACGTCT 59.244 50.000 17.92 1.84 0.00 4.18
3606 4264 3.945921 CACCCTCTTACTGATGACGTCTA 59.054 47.826 17.92 3.52 0.00 2.59
3607 4265 4.580995 CACCCTCTTACTGATGACGTCTAT 59.419 45.833 17.92 8.60 0.00 1.98
3608 4266 4.580995 ACCCTCTTACTGATGACGTCTATG 59.419 45.833 17.92 6.96 0.00 2.23
3609 4267 4.022762 CCCTCTTACTGATGACGTCTATGG 60.023 50.000 17.92 7.30 0.00 2.74
3610 4268 4.541779 CTCTTACTGATGACGTCTATGGC 58.458 47.826 17.92 2.20 0.00 4.40
3611 4269 3.951680 TCTTACTGATGACGTCTATGGCA 59.048 43.478 17.92 6.66 0.00 4.92
3612 4270 2.879002 ACTGATGACGTCTATGGCAG 57.121 50.000 17.92 16.89 0.00 4.85
3613 4271 2.379005 ACTGATGACGTCTATGGCAGA 58.621 47.619 17.92 0.00 0.00 4.26
3620 4278 3.706855 TCTATGGCAGACACCGCA 58.293 55.556 0.00 0.00 0.00 5.69
3621 4279 1.218047 TCTATGGCAGACACCGCAC 59.782 57.895 0.00 0.00 0.00 5.34
3623 4281 3.323758 TATGGCAGACACCGCACCC 62.324 63.158 0.00 0.00 0.00 4.61
3640 4298 1.667151 CCGGTAGGTGTTCGGTCAA 59.333 57.895 0.00 0.00 39.04 3.18
3641 4299 0.389426 CCGGTAGGTGTTCGGTCAAG 60.389 60.000 0.00 0.00 39.04 3.02
3642 4300 0.316204 CGGTAGGTGTTCGGTCAAGT 59.684 55.000 0.00 0.00 0.00 3.16
3643 4301 1.792006 GGTAGGTGTTCGGTCAAGTG 58.208 55.000 0.00 0.00 0.00 3.16
3645 4303 0.034337 TAGGTGTTCGGTCAAGTGCC 59.966 55.000 0.00 0.00 0.00 5.01
3646 4304 1.525077 GGTGTTCGGTCAAGTGCCA 60.525 57.895 0.00 0.00 0.00 4.92
3647 4305 0.889186 GGTGTTCGGTCAAGTGCCAT 60.889 55.000 0.00 0.00 0.00 4.40
3648 4306 0.951558 GTGTTCGGTCAAGTGCCATT 59.048 50.000 0.00 0.00 0.00 3.16
3650 4308 1.234821 GTTCGGTCAAGTGCCATTGA 58.765 50.000 0.00 0.00 36.85 2.57
3652 4310 1.737838 TCGGTCAAGTGCCATTGATC 58.262 50.000 4.23 3.09 41.05 2.92
3653 4311 0.734889 CGGTCAAGTGCCATTGATCC 59.265 55.000 4.23 6.71 41.05 3.36
3654 4312 1.679944 CGGTCAAGTGCCATTGATCCT 60.680 52.381 4.23 0.00 41.05 3.24
3655 4313 2.019984 GGTCAAGTGCCATTGATCCTC 58.980 52.381 4.23 0.00 41.05 3.71
3656 4314 2.356535 GGTCAAGTGCCATTGATCCTCT 60.357 50.000 4.23 0.00 41.05 3.69
3657 4315 3.350833 GTCAAGTGCCATTGATCCTCTT 58.649 45.455 4.23 0.00 41.05 2.85
3659 4317 4.219288 GTCAAGTGCCATTGATCCTCTTTT 59.781 41.667 4.23 0.00 41.05 2.27
3660 4318 4.834496 TCAAGTGCCATTGATCCTCTTTTT 59.166 37.500 0.00 0.00 34.31 1.94
3690 4348 3.896648 TTTTTGGAGAAGCACGATGAC 57.103 42.857 0.00 0.00 0.00 3.06
3691 4349 1.428448 TTTGGAGAAGCACGATGACG 58.572 50.000 0.00 0.00 45.75 4.35
3693 4351 1.519455 GGAGAAGCACGATGACGGG 60.519 63.158 0.00 0.00 46.60 5.28
3694 4352 1.511305 GAGAAGCACGATGACGGGA 59.489 57.895 0.00 0.00 46.86 5.14
3696 4354 1.337071 GAGAAGCACGATGACGGGATA 59.663 52.381 0.00 0.00 41.93 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.998106 AACCATCGAGTTGCTTTAGTATATATT 57.002 29.630 0.00 0.00 0.00 1.28
6 7 9.640963 GAACCATCGAGTTGCTTTAGTATATAT 57.359 33.333 0.00 0.00 0.00 0.86
7 8 8.635328 TGAACCATCGAGTTGCTTTAGTATATA 58.365 33.333 0.00 0.00 0.00 0.86
8 9 7.497595 TGAACCATCGAGTTGCTTTAGTATAT 58.502 34.615 0.00 0.00 0.00 0.86
9 10 6.869695 TGAACCATCGAGTTGCTTTAGTATA 58.130 36.000 0.00 0.00 0.00 1.47
10 11 5.730550 TGAACCATCGAGTTGCTTTAGTAT 58.269 37.500 0.00 0.00 0.00 2.12
11 12 5.142061 TGAACCATCGAGTTGCTTTAGTA 57.858 39.130 0.00 0.00 0.00 1.82
12 13 4.002906 TGAACCATCGAGTTGCTTTAGT 57.997 40.909 0.00 0.00 0.00 2.24
13 14 5.812642 ACTATGAACCATCGAGTTGCTTTAG 59.187 40.000 0.00 0.00 0.00 1.85
42 43 5.005012 TCGTTCCGAATCACGCTTAATTAAG 59.995 40.000 19.08 19.08 41.07 1.85
44 45 4.422840 TCGTTCCGAATCACGCTTAATTA 58.577 39.130 0.00 0.00 41.07 1.40
45 46 3.255725 TCGTTCCGAATCACGCTTAATT 58.744 40.909 0.00 0.00 41.07 1.40
112 117 2.743928 GGAGGCTGGAACTGTGCG 60.744 66.667 0.00 0.00 0.00 5.34
137 142 4.148174 CGTTCGCCTTTTCCATTTCTTTTC 59.852 41.667 0.00 0.00 0.00 2.29
160 165 2.651382 ACTTTATTACCATCCCGGCC 57.349 50.000 0.00 0.00 39.03 6.13
161 166 4.347360 ACTACTTTATTACCATCCCGGC 57.653 45.455 0.00 0.00 39.03 6.13
162 167 4.514066 GCAACTACTTTATTACCATCCCGG 59.486 45.833 0.00 0.00 42.50 5.73
163 168 5.120399 TGCAACTACTTTATTACCATCCCG 58.880 41.667 0.00 0.00 0.00 5.14
164 169 6.183360 GGTTGCAACTACTTTATTACCATCCC 60.183 42.308 27.64 1.97 0.00 3.85
182 187 2.203480 GCCCAGTCCAGGTTGCAA 60.203 61.111 0.00 0.00 0.00 4.08
231 236 2.109799 ATGGGAGGAATCGCAGCG 59.890 61.111 9.06 9.06 36.04 5.18
232 237 1.153086 ACATGGGAGGAATCGCAGC 60.153 57.895 0.00 0.00 36.04 5.25
321 326 1.545582 GTAAGCGTGGTACTGGTGGTA 59.454 52.381 0.00 0.00 0.00 3.25
322 327 0.319405 GTAAGCGTGGTACTGGTGGT 59.681 55.000 0.00 0.00 0.00 4.16
323 328 0.606604 AGTAAGCGTGGTACTGGTGG 59.393 55.000 0.00 0.00 30.52 4.61
324 329 2.066262 CAAGTAAGCGTGGTACTGGTG 58.934 52.381 0.00 0.00 32.10 4.17
358 363 1.610673 ACTCAGTGGCCAGACCGAT 60.611 57.895 5.11 0.00 43.94 4.18
362 367 0.394565 AACTCACTCAGTGGCCAGAC 59.605 55.000 5.11 0.00 34.56 3.51
376 383 4.094887 GCTGAGATTTTAATGGCGAACTCA 59.905 41.667 0.00 0.00 0.00 3.41
377 384 4.333926 AGCTGAGATTTTAATGGCGAACTC 59.666 41.667 0.00 0.00 0.00 3.01
378 385 4.095483 CAGCTGAGATTTTAATGGCGAACT 59.905 41.667 8.42 0.00 0.00 3.01
379 386 4.094887 TCAGCTGAGATTTTAATGGCGAAC 59.905 41.667 13.74 0.00 0.00 3.95
380 387 4.094887 GTCAGCTGAGATTTTAATGGCGAA 59.905 41.667 18.89 0.00 0.00 4.70
381 388 3.623060 GTCAGCTGAGATTTTAATGGCGA 59.377 43.478 18.89 0.00 0.00 5.54
394 423 1.354040 GTCAATGGACGTCAGCTGAG 58.646 55.000 18.89 13.73 33.68 3.35
398 427 1.641577 GTAGGTCAATGGACGTCAGC 58.358 55.000 18.91 5.89 45.28 4.26
404 433 6.377146 ACATTTATGTTGGTAGGTCAATGGAC 59.623 38.462 0.00 0.00 39.63 4.02
435 464 2.020559 CGCGATCGAGCTGCAAAC 59.979 61.111 21.57 0.00 38.10 2.93
459 488 2.095282 CGTCGTCGTCGTCGTGAT 59.905 61.111 12.51 0.00 41.73 3.06
460 489 3.029735 TCGTCGTCGTCGTCGTGA 61.030 61.111 18.44 8.27 45.27 4.35
461 490 2.857992 GTCGTCGTCGTCGTCGTG 60.858 66.667 18.44 6.23 45.27 4.35
462 491 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
463 492 3.984212 CTCGTCGTCGTCGTCGTCG 62.984 68.421 20.39 20.39 45.27 5.12
464 493 2.203140 TTCTCGTCGTCGTCGTCGTC 62.203 60.000 18.44 5.52 45.27 4.20
492 521 1.372087 GGGCAACAAGATCTCAGCCG 61.372 60.000 16.58 2.36 42.89 5.52
505 534 0.109919 GGATTTCGTTCACGGGCAAC 60.110 55.000 0.00 0.00 40.29 4.17
740 774 5.586339 GGGGAGAACGATACAACTTAGTAC 58.414 45.833 0.00 0.00 0.00 2.73
755 789 2.582978 GTAGTGGCCGGGGAGAAC 59.417 66.667 2.18 0.00 0.00 3.01
792 826 2.765250 AATAGATAGGCGCGGGCACG 62.765 60.000 26.61 2.50 42.47 5.34
880 925 1.107538 CAGATCAATGGCAGGCCCTG 61.108 60.000 6.32 6.32 34.56 4.45
881 926 1.229359 CAGATCAATGGCAGGCCCT 59.771 57.895 8.02 0.00 34.56 5.19
882 927 2.496291 GCAGATCAATGGCAGGCCC 61.496 63.158 8.02 0.00 34.56 5.80
883 928 0.179009 TAGCAGATCAATGGCAGGCC 60.179 55.000 2.62 2.62 0.00 5.19
884 929 0.950116 GTAGCAGATCAATGGCAGGC 59.050 55.000 0.00 0.00 0.00 4.85
885 930 2.617308 CAAGTAGCAGATCAATGGCAGG 59.383 50.000 0.00 0.00 0.00 4.85
888 933 2.877168 CCTCAAGTAGCAGATCAATGGC 59.123 50.000 0.00 0.00 0.00 4.40
897 942 2.015736 ACGCATTCCTCAAGTAGCAG 57.984 50.000 0.00 0.00 0.00 4.24
921 966 4.868734 GGTACTACAAGTAGCATCCACAAC 59.131 45.833 10.54 0.00 45.67 3.32
952 997 2.150051 CCACAGAGCCCCTATCCCC 61.150 68.421 0.00 0.00 0.00 4.81
961 1006 1.516892 CAGAGAGAGCCACAGAGCC 59.483 63.158 0.00 0.00 0.00 4.70
1107 1152 3.571571 CATCGAAGAAGAACACGTACCA 58.428 45.455 0.00 0.00 43.58 3.25
1112 1157 1.060713 ACGCATCGAAGAAGAACACG 58.939 50.000 0.00 0.00 43.58 4.49
1130 1175 3.241067 ACAGATGGAATGCAATGCAAC 57.759 42.857 13.45 9.60 43.62 4.17
1143 1188 4.194640 AGTCCATGAATCGAAACAGATGG 58.805 43.478 0.00 0.00 0.00 3.51
1144 1189 4.872124 TGAGTCCATGAATCGAAACAGATG 59.128 41.667 0.00 0.00 28.49 2.90
1145 1190 5.089970 TGAGTCCATGAATCGAAACAGAT 57.910 39.130 0.00 0.00 28.49 2.90
1147 1192 5.352293 TGAATGAGTCCATGAATCGAAACAG 59.648 40.000 0.00 0.00 32.36 3.16
1148 1193 5.244755 TGAATGAGTCCATGAATCGAAACA 58.755 37.500 0.00 0.00 32.36 2.83
1149 1194 5.801350 TGAATGAGTCCATGAATCGAAAC 57.199 39.130 0.00 0.00 32.36 2.78
1153 1198 4.577693 ACCAATGAATGAGTCCATGAATCG 59.422 41.667 0.00 0.00 32.36 3.34
1154 1199 5.277683 CGACCAATGAATGAGTCCATGAATC 60.278 44.000 0.00 0.00 32.36 2.52
1155 1200 4.577693 CGACCAATGAATGAGTCCATGAAT 59.422 41.667 0.00 0.00 32.36 2.57
1157 1202 3.534554 CGACCAATGAATGAGTCCATGA 58.465 45.455 0.00 0.00 32.36 3.07
1158 1203 2.032550 GCGACCAATGAATGAGTCCATG 59.967 50.000 0.00 0.00 32.36 3.66
1159 1204 2.292267 GCGACCAATGAATGAGTCCAT 58.708 47.619 0.00 0.00 33.66 3.41
1160 1205 1.003003 TGCGACCAATGAATGAGTCCA 59.997 47.619 0.00 0.00 0.00 4.02
1164 1209 1.262417 CGGATGCGACCAATGAATGAG 59.738 52.381 0.00 0.00 0.00 2.90
1165 1210 1.134551 TCGGATGCGACCAATGAATGA 60.135 47.619 4.75 0.00 0.00 2.57
1166 1211 1.298602 TCGGATGCGACCAATGAATG 58.701 50.000 4.75 0.00 0.00 2.67
1169 1214 1.298602 CATTCGGATGCGACCAATGA 58.701 50.000 9.51 0.00 34.06 2.57
1170 1215 3.831729 CATTCGGATGCGACCAATG 57.168 52.632 9.51 7.12 0.00 2.82
1184 1242 1.732259 AGAACCGATGAACACGCATTC 59.268 47.619 0.00 0.00 0.00 2.67
1185 1245 1.808411 AGAACCGATGAACACGCATT 58.192 45.000 0.00 0.00 0.00 3.56
1186 1246 1.464608 CAAGAACCGATGAACACGCAT 59.535 47.619 0.00 0.00 0.00 4.73
1190 1250 2.032030 CACCACAAGAACCGATGAACAC 60.032 50.000 0.00 0.00 0.00 3.32
1206 1266 3.826157 TGTCAAATCTCCATTTCCACCAC 59.174 43.478 0.00 0.00 28.97 4.16
1239 1299 0.822164 GGCTTGCCTGCAGATTGAAT 59.178 50.000 17.39 0.00 34.04 2.57
1295 1355 1.406614 CCTGCGAGATTGAAGAAGGCT 60.407 52.381 0.00 0.00 0.00 4.58
1320 1380 5.363101 TCATCCACATTGTAGCAGAAGATC 58.637 41.667 0.00 0.00 0.00 2.75
1345 1429 0.538118 TTCCCCGGATGAACTAACCG 59.462 55.000 0.73 0.00 45.24 4.44
1414 1501 6.560003 TGAACTCCTCCTCTGCATTATTTA 57.440 37.500 0.00 0.00 0.00 1.40
1415 1502 5.441718 TGAACTCCTCCTCTGCATTATTT 57.558 39.130 0.00 0.00 0.00 1.40
1416 1503 5.455899 GGATGAACTCCTCCTCTGCATTATT 60.456 44.000 0.00 0.00 41.29 1.40
1417 1504 4.041444 GGATGAACTCCTCCTCTGCATTAT 59.959 45.833 0.00 0.00 41.29 1.28
1418 1505 3.389329 GGATGAACTCCTCCTCTGCATTA 59.611 47.826 0.00 0.00 41.29 1.90
1469 1556 2.007608 CAGTAGTCGGATCTCGTGTCA 58.992 52.381 0.00 0.00 40.32 3.58
1584 1671 2.769617 GATCCACGTCGCGTTGTG 59.230 61.111 21.03 21.03 38.32 3.33
2385 2472 1.970917 GCGTTCATCGGCAGGAACAG 61.971 60.000 12.43 7.86 42.67 3.16
2444 2531 1.144057 GTACTCGTCCATGGCCAGG 59.856 63.158 13.05 12.17 0.00 4.45
2783 2876 2.829120 AGAACGAGAAGAAGAAGGGGAG 59.171 50.000 0.00 0.00 0.00 4.30
2857 2952 2.034879 CACCCTGTCGTCCATGCAC 61.035 63.158 0.00 0.00 0.00 4.57
2867 2962 1.441732 AAAAACGTCGCCACCCTGTC 61.442 55.000 0.00 0.00 0.00 3.51
2911 3007 1.740664 GGCTCCGGGAAAACGACTC 60.741 63.158 0.00 0.00 35.47 3.36
3009 3105 5.414765 GTCGGTCCATCTAAAGAAAACCATT 59.585 40.000 8.58 0.00 0.00 3.16
3010 3106 4.941873 GTCGGTCCATCTAAAGAAAACCAT 59.058 41.667 8.58 0.00 0.00 3.55
3053 3149 2.109126 GGCACGAGGGTTGATGCTC 61.109 63.158 0.00 0.00 38.18 4.26
3123 3219 1.086696 CGGTAGGTGCTCCAACATTG 58.913 55.000 7.70 0.00 35.89 2.82
3147 3243 1.942712 CGGCGTATGTAGGCACGTC 60.943 63.158 0.00 0.00 40.25 4.34
3208 3304 0.383590 AGAGATCCATCGCTGTCGTG 59.616 55.000 0.00 0.00 35.58 4.35
3229 3353 1.374885 TCGATGCTCGCCGGAAAAA 60.375 52.632 5.05 0.00 40.21 1.94
3268 3392 2.296190 CAGCACCCTTACCCTTTGAAAC 59.704 50.000 0.00 0.00 0.00 2.78
3284 3408 2.022129 CGTCTTGACCGACCAGCAC 61.022 63.158 0.00 0.00 0.00 4.40
3285 3409 2.023414 AACGTCTTGACCGACCAGCA 62.023 55.000 0.00 0.00 0.00 4.41
3286 3410 1.282930 GAACGTCTTGACCGACCAGC 61.283 60.000 0.00 0.00 0.00 4.85
3289 3413 0.666577 CCAGAACGTCTTGACCGACC 60.667 60.000 0.00 0.00 0.00 4.79
3290 3414 0.666577 CCCAGAACGTCTTGACCGAC 60.667 60.000 0.00 0.00 0.00 4.79
3291 3415 0.824595 TCCCAGAACGTCTTGACCGA 60.825 55.000 0.00 0.00 0.00 4.69
3292 3416 0.388649 CTCCCAGAACGTCTTGACCG 60.389 60.000 0.00 0.00 0.00 4.79
3293 3417 0.037232 CCTCCCAGAACGTCTTGACC 60.037 60.000 0.00 0.00 0.00 4.02
3294 3418 0.670854 GCCTCCCAGAACGTCTTGAC 60.671 60.000 0.00 0.00 0.00 3.18
3295 3419 0.832135 AGCCTCCCAGAACGTCTTGA 60.832 55.000 0.00 0.00 0.00 3.02
3297 3421 0.765510 AAAGCCTCCCAGAACGTCTT 59.234 50.000 0.00 0.00 0.00 3.01
3299 3423 0.250338 ACAAAGCCTCCCAGAACGTC 60.250 55.000 0.00 0.00 0.00 4.34
3300 3424 0.535102 CACAAAGCCTCCCAGAACGT 60.535 55.000 0.00 0.00 0.00 3.99
3302 3426 0.895559 CCCACAAAGCCTCCCAGAAC 60.896 60.000 0.00 0.00 0.00 3.01
3303 3427 1.065410 TCCCACAAAGCCTCCCAGAA 61.065 55.000 0.00 0.00 0.00 3.02
3304 3428 1.463214 TCCCACAAAGCCTCCCAGA 60.463 57.895 0.00 0.00 0.00 3.86
3305 3429 1.001641 CTCCCACAAAGCCTCCCAG 60.002 63.158 0.00 0.00 0.00 4.45
3306 3430 1.463214 TCTCCCACAAAGCCTCCCA 60.463 57.895 0.00 0.00 0.00 4.37
3307 3431 1.002011 GTCTCCCACAAAGCCTCCC 60.002 63.158 0.00 0.00 0.00 4.30
3308 3432 0.322008 CAGTCTCCCACAAAGCCTCC 60.322 60.000 0.00 0.00 0.00 4.30
3309 3433 0.687354 TCAGTCTCCCACAAAGCCTC 59.313 55.000 0.00 0.00 0.00 4.70
3311 3435 1.239347 GTTCAGTCTCCCACAAAGCC 58.761 55.000 0.00 0.00 0.00 4.35
3312 3436 1.967319 TGTTCAGTCTCCCACAAAGC 58.033 50.000 0.00 0.00 0.00 3.51
3313 3437 3.743521 TGATGTTCAGTCTCCCACAAAG 58.256 45.455 0.00 0.00 0.00 2.77
3314 3438 3.855255 TGATGTTCAGTCTCCCACAAA 57.145 42.857 0.00 0.00 0.00 2.83
3315 3439 3.855255 TTGATGTTCAGTCTCCCACAA 57.145 42.857 0.00 0.00 0.00 3.33
3316 3440 3.327464 TGATTGATGTTCAGTCTCCCACA 59.673 43.478 2.39 0.00 34.64 4.17
3317 3441 3.686726 GTGATTGATGTTCAGTCTCCCAC 59.313 47.826 2.39 0.00 34.64 4.61
3319 3443 2.932614 CGTGATTGATGTTCAGTCTCCC 59.067 50.000 2.39 0.00 34.64 4.30
3321 3445 4.800993 CCTACGTGATTGATGTTCAGTCTC 59.199 45.833 0.00 0.00 34.64 3.36
3323 3447 4.563184 GTCCTACGTGATTGATGTTCAGTC 59.437 45.833 0.00 0.00 34.21 3.51
3324 3448 4.220821 AGTCCTACGTGATTGATGTTCAGT 59.779 41.667 0.00 0.00 0.00 3.41
3326 3450 4.381612 GGAGTCCTACGTGATTGATGTTCA 60.382 45.833 0.41 0.00 0.00 3.18
3327 3451 4.113354 GGAGTCCTACGTGATTGATGTTC 58.887 47.826 0.41 0.00 0.00 3.18
3328 3452 3.428999 CGGAGTCCTACGTGATTGATGTT 60.429 47.826 7.77 0.00 30.94 2.71
3329 3453 2.099263 CGGAGTCCTACGTGATTGATGT 59.901 50.000 7.77 0.00 30.94 3.06
3330 3454 2.357952 TCGGAGTCCTACGTGATTGATG 59.642 50.000 7.77 0.00 38.28 3.07
3331 3455 2.358267 GTCGGAGTCCTACGTGATTGAT 59.642 50.000 7.77 0.00 38.28 2.57
3332 3456 1.741706 GTCGGAGTCCTACGTGATTGA 59.258 52.381 7.77 0.00 38.28 2.57
3333 3457 1.471287 TGTCGGAGTCCTACGTGATTG 59.529 52.381 7.77 0.00 38.28 2.67
3335 3459 1.093159 GTGTCGGAGTCCTACGTGAT 58.907 55.000 7.77 0.00 38.28 3.06
3336 3460 0.957395 GGTGTCGGAGTCCTACGTGA 60.957 60.000 7.77 0.00 38.28 4.35
3337 3461 1.505353 GGTGTCGGAGTCCTACGTG 59.495 63.158 7.77 0.00 38.28 4.49
3338 3462 1.676967 GGGTGTCGGAGTCCTACGT 60.677 63.158 7.77 0.00 38.28 3.57
3339 3463 2.413142 GGGGTGTCGGAGTCCTACG 61.413 68.421 7.77 0.00 38.52 3.51
3340 3464 2.056815 GGGGGTGTCGGAGTCCTAC 61.057 68.421 7.77 7.30 0.00 3.18
3341 3465 1.882189 ATGGGGGTGTCGGAGTCCTA 61.882 60.000 7.77 0.00 0.00 2.94
3342 3466 3.254035 ATGGGGGTGTCGGAGTCCT 62.254 63.158 7.77 0.00 0.00 3.85
3343 3467 2.687566 ATGGGGGTGTCGGAGTCC 60.688 66.667 0.00 0.00 0.00 3.85
3344 3468 1.677637 GAGATGGGGGTGTCGGAGTC 61.678 65.000 0.00 0.00 0.00 3.36
3345 3469 1.686110 GAGATGGGGGTGTCGGAGT 60.686 63.158 0.00 0.00 0.00 3.85
3346 3470 1.050988 ATGAGATGGGGGTGTCGGAG 61.051 60.000 0.00 0.00 0.00 4.63
3349 3473 0.541392 TCAATGAGATGGGGGTGTCG 59.459 55.000 0.00 0.00 0.00 4.35
3350 3474 2.806945 TTCAATGAGATGGGGGTGTC 57.193 50.000 0.00 0.00 0.00 3.67
3351 3475 3.628257 GGAATTCAATGAGATGGGGGTGT 60.628 47.826 7.93 0.00 0.00 4.16
3354 3478 3.494332 GAGGAATTCAATGAGATGGGGG 58.506 50.000 7.93 0.00 0.00 5.40
3356 3480 4.450305 AGGAGGAATTCAATGAGATGGG 57.550 45.455 7.93 0.00 0.00 4.00
3358 3482 6.057627 CGAAAGGAGGAATTCAATGAGATG 57.942 41.667 7.93 0.00 0.00 2.90
3377 3501 6.854778 AGTGCAAGTAAAAAGTAAACCGAAA 58.145 32.000 0.00 0.00 0.00 3.46
3378 3502 6.439675 AGTGCAAGTAAAAAGTAAACCGAA 57.560 33.333 0.00 0.00 0.00 4.30
3380 3504 5.209977 GGAGTGCAAGTAAAAAGTAAACCG 58.790 41.667 0.00 0.00 0.00 4.44
3381 3505 5.975344 GTGGAGTGCAAGTAAAAAGTAAACC 59.025 40.000 0.00 0.00 0.00 3.27
3383 3507 5.068067 GGGTGGAGTGCAAGTAAAAAGTAAA 59.932 40.000 0.00 0.00 0.00 2.01
3387 3511 2.296190 GGGGTGGAGTGCAAGTAAAAAG 59.704 50.000 0.00 0.00 0.00 2.27
3391 3515 0.770557 AGGGGGTGGAGTGCAAGTAA 60.771 55.000 0.00 0.00 0.00 2.24
3392 3516 1.151899 AGGGGGTGGAGTGCAAGTA 60.152 57.895 0.00 0.00 0.00 2.24
3394 3518 2.352805 GAGGGGGTGGAGTGCAAG 59.647 66.667 0.00 0.00 0.00 4.01
3400 3524 4.371231 AAGGGGGAGGGGGTGGAG 62.371 72.222 0.00 0.00 0.00 3.86
3404 3528 4.040198 GGAGAAGGGGGAGGGGGT 62.040 72.222 0.00 0.00 0.00 4.95
3405 3529 3.711782 AGGAGAAGGGGGAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
3406 3530 2.040359 GAGGAGAAGGGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
3408 3532 0.267356 ATGAGAGGAGAAGGGGGAGG 59.733 60.000 0.00 0.00 0.00 4.30
3409 3533 2.188818 AATGAGAGGAGAAGGGGGAG 57.811 55.000 0.00 0.00 0.00 4.30
3414 4072 6.539464 CAGATGAAAGAAATGAGAGGAGAAGG 59.461 42.308 0.00 0.00 0.00 3.46
3417 4075 5.046087 TGCAGATGAAAGAAATGAGAGGAGA 60.046 40.000 0.00 0.00 0.00 3.71
3420 4078 4.096081 GGTGCAGATGAAAGAAATGAGAGG 59.904 45.833 0.00 0.00 0.00 3.69
3423 4081 4.015084 AGGGTGCAGATGAAAGAAATGAG 58.985 43.478 0.00 0.00 0.00 2.90
3424 4082 4.038271 AGGGTGCAGATGAAAGAAATGA 57.962 40.909 0.00 0.00 0.00 2.57
3427 4085 3.822735 CAGAAGGGTGCAGATGAAAGAAA 59.177 43.478 0.00 0.00 0.00 2.52
3435 4093 0.842030 TGGGACAGAAGGGTGCAGAT 60.842 55.000 0.00 0.00 0.00 2.90
3436 4094 1.461268 TGGGACAGAAGGGTGCAGA 60.461 57.895 0.00 0.00 0.00 4.26
3438 4096 2.836154 GTGGGACAGAAGGGTGCA 59.164 61.111 0.00 0.00 41.80 4.57
3440 4098 2.358737 GCGTGGGACAGAAGGGTG 60.359 66.667 0.00 0.00 41.80 4.61
3455 4113 1.513586 GAGAGGTACAACGACGGCG 60.514 63.158 10.39 10.39 44.79 6.46
3456 4114 0.456312 CAGAGAGGTACAACGACGGC 60.456 60.000 0.00 0.00 0.00 5.68
3457 4115 0.170561 CCAGAGAGGTACAACGACGG 59.829 60.000 0.00 0.00 0.00 4.79
3458 4116 1.135746 GTCCAGAGAGGTACAACGACG 60.136 57.143 0.00 0.00 39.02 5.12
3459 4117 1.135746 CGTCCAGAGAGGTACAACGAC 60.136 57.143 0.00 0.00 36.34 4.34
3460 4118 1.162698 CGTCCAGAGAGGTACAACGA 58.837 55.000 0.00 0.00 36.34 3.85
3461 4119 0.456312 GCGTCCAGAGAGGTACAACG 60.456 60.000 0.00 0.00 37.06 4.10
3463 4121 0.541063 TGGCGTCCAGAGAGGTACAA 60.541 55.000 0.00 0.00 39.02 2.41
3464 4122 0.324368 ATGGCGTCCAGAGAGGTACA 60.324 55.000 4.90 0.00 36.75 2.90
3467 4125 1.305297 TGATGGCGTCCAGAGAGGT 60.305 57.895 3.88 0.00 36.75 3.85
3469 4127 1.039785 TCCTGATGGCGTCCAGAGAG 61.040 60.000 3.88 0.00 36.75 3.20
3470 4128 0.614697 TTCCTGATGGCGTCCAGAGA 60.615 55.000 3.88 0.21 36.75 3.10
3471 4129 0.467384 ATTCCTGATGGCGTCCAGAG 59.533 55.000 3.88 0.00 36.75 3.35
3473 4131 0.533755 GGATTCCTGATGGCGTCCAG 60.534 60.000 3.88 2.04 36.75 3.86
3475 4133 0.250081 GAGGATTCCTGATGGCGTCC 60.250 60.000 10.74 0.00 37.07 4.79
3477 4135 1.443407 CGAGGATTCCTGATGGCGT 59.557 57.895 10.74 0.00 31.76 5.68
3478 4136 1.301244 CCGAGGATTCCTGATGGCG 60.301 63.158 10.74 6.86 31.76 5.69
3479 4137 0.250081 GTCCGAGGATTCCTGATGGC 60.250 60.000 10.74 0.00 31.76 4.40
3481 4139 0.747255 ACGTCCGAGGATTCCTGATG 59.253 55.000 10.74 10.04 31.76 3.07
3482 4140 1.033574 GACGTCCGAGGATTCCTGAT 58.966 55.000 10.74 0.00 31.76 2.90
3484 4142 1.437986 GGACGTCCGAGGATTCCTG 59.562 63.158 20.85 2.65 31.76 3.86
3485 4143 3.936535 GGACGTCCGAGGATTCCT 58.063 61.111 20.85 4.44 36.03 3.36
3516 4174 2.709125 TACAAAGCAGGCAGTCGCGT 62.709 55.000 5.77 0.00 39.92 6.01
3517 4175 2.027073 TACAAAGCAGGCAGTCGCG 61.027 57.895 0.00 0.00 39.92 5.87
3519 4177 0.602638 TGGTACAAAGCAGGCAGTCG 60.603 55.000 0.00 0.00 31.92 4.18
3520 4178 0.875059 GTGGTACAAAGCAGGCAGTC 59.125 55.000 0.00 0.00 44.16 3.51
3522 4180 0.593128 GTGTGGTACAAAGCAGGCAG 59.407 55.000 0.00 0.00 44.16 4.85
3528 4186 0.179001 ACAGGGGTGTGGTACAAAGC 60.179 55.000 0.00 0.00 44.57 3.51
3529 4187 1.544759 GGACAGGGGTGTGGTACAAAG 60.545 57.143 0.00 0.00 44.16 2.77
3530 4188 0.475044 GGACAGGGGTGTGGTACAAA 59.525 55.000 0.00 0.00 44.16 2.83
3533 4191 1.373812 GTGGACAGGGGTGTGGTAC 59.626 63.158 0.00 0.00 0.00 3.34
3534 4192 1.844289 GGTGGACAGGGGTGTGGTA 60.844 63.158 0.00 0.00 0.00 3.25
3536 4194 3.966543 GGGTGGACAGGGGTGTGG 61.967 72.222 0.00 0.00 0.00 4.17
3537 4195 3.174987 TGGGTGGACAGGGGTGTG 61.175 66.667 0.00 0.00 0.00 3.82
3538 4196 2.854032 CTGGGTGGACAGGGGTGT 60.854 66.667 0.00 0.00 34.84 4.16
3544 4202 0.916358 AGGGATTCCTGGGTGGACAG 60.916 60.000 2.01 0.00 46.14 3.51
3545 4203 0.914417 GAGGGATTCCTGGGTGGACA 60.914 60.000 0.00 0.00 46.14 4.02
3546 4204 0.621862 AGAGGGATTCCTGGGTGGAC 60.622 60.000 0.00 0.00 46.14 4.02
3547 4205 0.621571 CAGAGGGATTCCTGGGTGGA 60.622 60.000 0.00 0.00 45.05 4.02
3548 4206 1.918253 CAGAGGGATTCCTGGGTGG 59.082 63.158 0.00 0.00 45.05 4.61
3549 4207 1.225704 GCAGAGGGATTCCTGGGTG 59.774 63.158 0.00 0.00 45.05 4.61
3551 4209 1.530771 CTGCAGAGGGATTCCTGGG 59.469 63.158 8.42 0.00 45.05 4.45
3552 4210 1.153005 GCTGCAGAGGGATTCCTGG 60.153 63.158 20.43 0.00 45.05 4.45
3555 4213 0.396060 CCTAGCTGCAGAGGGATTCC 59.604 60.000 20.43 0.00 0.00 3.01
3556 4214 1.127343 ACCTAGCTGCAGAGGGATTC 58.873 55.000 20.43 0.00 37.14 2.52
3559 4217 0.397254 GGTACCTAGCTGCAGAGGGA 60.397 60.000 20.43 10.52 37.14 4.20
3575 4233 0.685458 GTAAGAGGGTGCGGAGGGTA 60.685 60.000 0.00 0.00 0.00 3.69
3576 4234 1.988406 GTAAGAGGGTGCGGAGGGT 60.988 63.158 0.00 0.00 0.00 4.34
3577 4235 1.686110 AGTAAGAGGGTGCGGAGGG 60.686 63.158 0.00 0.00 0.00 4.30
3578 4236 0.970937 TCAGTAAGAGGGTGCGGAGG 60.971 60.000 0.00 0.00 0.00 4.30
3579 4237 1.115467 ATCAGTAAGAGGGTGCGGAG 58.885 55.000 0.00 0.00 0.00 4.63
3580 4238 0.824109 CATCAGTAAGAGGGTGCGGA 59.176 55.000 0.00 0.00 0.00 5.54
3581 4239 0.824109 TCATCAGTAAGAGGGTGCGG 59.176 55.000 0.00 0.00 0.00 5.69
3582 4240 1.799181 CGTCATCAGTAAGAGGGTGCG 60.799 57.143 0.00 0.00 0.00 5.34
3583 4241 1.204941 ACGTCATCAGTAAGAGGGTGC 59.795 52.381 0.00 0.00 0.00 5.01
3584 4242 2.755655 AGACGTCATCAGTAAGAGGGTG 59.244 50.000 19.50 0.00 0.00 4.61
3585 4243 3.088789 AGACGTCATCAGTAAGAGGGT 57.911 47.619 19.50 0.00 0.00 4.34
3587 4245 4.557695 GCCATAGACGTCATCAGTAAGAGG 60.558 50.000 19.50 6.20 0.00 3.69
3588 4246 4.036852 TGCCATAGACGTCATCAGTAAGAG 59.963 45.833 19.50 0.00 0.00 2.85
3589 4247 3.951680 TGCCATAGACGTCATCAGTAAGA 59.048 43.478 19.50 0.00 0.00 2.10
3590 4248 4.036852 TCTGCCATAGACGTCATCAGTAAG 59.963 45.833 19.50 6.99 0.00 2.34
3591 4249 3.951680 TCTGCCATAGACGTCATCAGTAA 59.048 43.478 19.50 0.00 0.00 2.24
3592 4250 3.315470 GTCTGCCATAGACGTCATCAGTA 59.685 47.826 19.50 0.60 45.77 2.74
3594 4252 2.736978 GTCTGCCATAGACGTCATCAG 58.263 52.381 19.50 15.39 45.77 2.90
3595 4253 2.871182 GTCTGCCATAGACGTCATCA 57.129 50.000 19.50 2.36 45.77 3.07
3603 4261 1.218047 GTGCGGTGTCTGCCATAGA 59.782 57.895 0.00 0.00 0.00 1.98
3605 4263 2.267642 GGTGCGGTGTCTGCCATA 59.732 61.111 0.00 0.00 0.00 2.74
3606 4264 4.722700 GGGTGCGGTGTCTGCCAT 62.723 66.667 0.00 0.00 0.00 4.40
3610 4268 3.642778 CTACCGGGTGCGGTGTCTG 62.643 68.421 10.66 0.00 42.89 3.51
3611 4269 3.379445 CTACCGGGTGCGGTGTCT 61.379 66.667 10.66 0.00 42.89 3.41
3612 4270 4.446413 CCTACCGGGTGCGGTGTC 62.446 72.222 10.66 0.00 42.89 3.67
3621 4279 1.818959 TTGACCGAACACCTACCGGG 61.819 60.000 6.32 0.00 46.83 5.73
3623 4281 0.316204 ACTTGACCGAACACCTACCG 59.684 55.000 0.00 0.00 0.00 4.02
3624 4282 1.792006 CACTTGACCGAACACCTACC 58.208 55.000 0.00 0.00 0.00 3.18
3626 4284 0.034337 GGCACTTGACCGAACACCTA 59.966 55.000 0.00 0.00 0.00 3.08
3627 4285 1.227853 GGCACTTGACCGAACACCT 60.228 57.895 0.00 0.00 0.00 4.00
3628 4286 0.889186 ATGGCACTTGACCGAACACC 60.889 55.000 0.00 0.00 0.00 4.16
3629 4287 0.951558 AATGGCACTTGACCGAACAC 59.048 50.000 0.00 0.00 0.00 3.32
3630 4288 0.950836 CAATGGCACTTGACCGAACA 59.049 50.000 0.00 0.00 0.00 3.18
3631 4289 1.234821 TCAATGGCACTTGACCGAAC 58.765 50.000 7.85 0.00 30.34 3.95
3632 4290 2.083774 GATCAATGGCACTTGACCGAA 58.916 47.619 12.42 0.00 37.93 4.30
3634 4292 0.734889 GGATCAATGGCACTTGACCG 59.265 55.000 12.42 0.00 37.93 4.79
3635 4293 2.019984 GAGGATCAATGGCACTTGACC 58.980 52.381 12.42 14.00 37.93 4.02
3636 4294 2.996631 AGAGGATCAATGGCACTTGAC 58.003 47.619 12.42 8.19 37.93 3.18
3670 4328 2.223144 CGTCATCGTGCTTCTCCAAAAA 59.777 45.455 0.00 0.00 0.00 1.94
3671 4329 1.798223 CGTCATCGTGCTTCTCCAAAA 59.202 47.619 0.00 0.00 0.00 2.44
3672 4330 1.428448 CGTCATCGTGCTTCTCCAAA 58.572 50.000 0.00 0.00 0.00 3.28
3675 4333 1.519455 CCCGTCATCGTGCTTCTCC 60.519 63.158 0.00 0.00 35.01 3.71
3676 4334 0.103208 ATCCCGTCATCGTGCTTCTC 59.897 55.000 0.00 0.00 35.01 2.87
3677 4335 1.399714 TATCCCGTCATCGTGCTTCT 58.600 50.000 0.00 0.00 35.01 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.