Multiple sequence alignment - TraesCS7A01G411500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G411500 chr7A 100.000 2972 0 0 1000 3971 602275266 602272295 0.000000e+00 5489
1 TraesCS7A01G411500 chr7A 100.000 633 0 0 1 633 602276265 602275633 0.000000e+00 1170
2 TraesCS7A01G411500 chr7A 83.019 318 34 8 254 565 133815500 133815803 1.820000e-68 270
3 TraesCS7A01G411500 chr7A 79.851 402 51 19 254 630 397431273 397430877 2.350000e-67 267
4 TraesCS7A01G411500 chr3D 94.329 1446 65 12 2382 3822 134544678 134543245 0.000000e+00 2200
5 TraesCS7A01G411500 chr3D 95.614 228 10 0 2159 2386 134545065 134544838 2.250000e-97 366
6 TraesCS7A01G411500 chr3D 94.304 158 7 2 3 160 49900430 49900585 1.430000e-59 241
7 TraesCS7A01G411500 chr3D 94.839 155 6 2 6 160 210063239 210063087 1.430000e-59 241
8 TraesCS7A01G411500 chr6B 91.515 1591 117 10 2382 3971 44522951 44524524 0.000000e+00 2174
9 TraesCS7A01G411500 chr6B 88.563 1635 132 33 2384 3971 455775332 455776958 0.000000e+00 1932
10 TraesCS7A01G411500 chr6B 93.333 345 23 0 2042 2386 44522447 44522791 9.840000e-141 510
11 TraesCS7A01G411500 chr6B 91.395 337 23 1 2050 2386 455774840 455775170 1.300000e-124 457
12 TraesCS7A01G411500 chr6B 82.867 286 39 7 254 534 440981859 440982139 8.520000e-62 248
13 TraesCS7A01G411500 chr2A 93.739 1150 52 17 2382 3525 37684235 37683100 0.000000e+00 1707
14 TraesCS7A01G411500 chr2A 92.308 442 33 1 2382 2823 687510890 687510450 9.370000e-176 627
15 TraesCS7A01G411500 chr2A 89.245 437 44 3 3535 3971 37683116 37682683 9.710000e-151 544
16 TraesCS7A01G411500 chr2A 91.341 358 30 1 2032 2388 687511405 687511048 4.610000e-134 488
17 TraesCS7A01G411500 chr2A 95.614 228 9 1 2159 2386 37684621 37684395 8.110000e-97 364
18 TraesCS7A01G411500 chr2A 91.613 155 13 0 1881 2035 687511608 687511454 8.640000e-52 215
19 TraesCS7A01G411500 chr2A 87.692 130 14 2 2643 2772 33471167 33471040 2.470000e-32 150
20 TraesCS7A01G411500 chr2A 93.243 74 5 0 2666 2739 327145117 327145190 4.200000e-20 110
21 TraesCS7A01G411500 chr6A 94.172 978 51 4 2778 3752 578663111 578662137 0.000000e+00 1485
22 TraesCS7A01G411500 chr6A 92.593 513 26 9 1374 1884 578664351 578663849 0.000000e+00 726
23 TraesCS7A01G411500 chr6A 91.931 347 27 1 1000 1345 578664692 578664346 5.970000e-133 484
24 TraesCS7A01G411500 chr5B 95.066 912 44 1 2382 3293 25707600 25708510 0.000000e+00 1434
25 TraesCS7A01G411500 chr5B 96.508 315 10 1 2382 2695 12752560 12752246 1.640000e-143 520
26 TraesCS7A01G411500 chr5B 91.036 357 32 0 2467 2823 640804012 640803656 2.150000e-132 483
27 TraesCS7A01G411500 chr5B 91.098 337 24 1 2050 2386 25707110 25707440 6.050000e-123 451
28 TraesCS7A01G411500 chr5B 93.860 228 14 0 2159 2386 12740917 12740690 1.060000e-90 344
29 TraesCS7A01G411500 chr6D 91.230 935 55 14 3042 3970 59756296 59755383 0.000000e+00 1247
30 TraesCS7A01G411500 chr6D 94.798 346 18 0 1493 1838 202935637 202935292 1.260000e-149 540
31 TraesCS7A01G411500 chr6D 80.769 390 58 15 254 630 223689423 223689808 5.020000e-74 289
32 TraesCS7A01G411500 chr7D 91.104 933 56 14 3042 3970 429958539 429957630 0.000000e+00 1238
33 TraesCS7A01G411500 chr7D 88.676 627 59 7 1061 1681 590428846 590429466 0.000000e+00 754
34 TraesCS7A01G411500 chr7D 95.640 344 15 0 1495 1838 139583420 139583763 1.610000e-153 553
35 TraesCS7A01G411500 chr7D 95.376 346 16 0 1493 1838 43291151 43290806 5.800000e-153 551
36 TraesCS7A01G411500 chr7D 89.296 355 35 3 3417 3771 570248447 570248096 3.640000e-120 442
37 TraesCS7A01G411500 chr7D 90.310 258 24 1 3714 3971 610727173 610727429 1.770000e-88 337
38 TraesCS7A01G411500 chr7D 94.340 159 7 2 2 160 575412097 575412253 3.960000e-60 243
39 TraesCS7A01G411500 chr1D 90.150 934 65 16 3042 3970 369481797 369480886 0.000000e+00 1190
40 TraesCS7A01G411500 chr1D 94.839 155 6 2 6 160 420425025 420424873 1.430000e-59 241
41 TraesCS7A01G411500 chr1D 87.742 155 15 4 1883 2035 476908303 476908151 1.130000e-40 178
42 TraesCS7A01G411500 chr3B 87.834 1011 99 14 2981 3971 693815037 693814031 0.000000e+00 1164
43 TraesCS7A01G411500 chr3B 91.913 507 29 8 1374 1878 137275700 137276196 0.000000e+00 699
44 TraesCS7A01G411500 chr3B 90.591 372 27 3 1000 1369 137275359 137275724 1.660000e-133 486
45 TraesCS7A01G411500 chr3B 91.018 334 24 1 2053 2386 693815707 693815380 2.820000e-121 446
46 TraesCS7A01G411500 chr3B 84.906 318 32 6 254 566 290614579 290614885 1.390000e-79 307
47 TraesCS7A01G411500 chr3B 87.940 199 24 0 2624 2822 697442522 697442324 6.630000e-58 235
48 TraesCS7A01G411500 chr3B 87.940 199 23 1 2624 2822 442046647 442046844 2.390000e-57 233
49 TraesCS7A01G411500 chr7B 86.658 787 76 13 1061 1833 665413659 665414430 0.000000e+00 845
50 TraesCS7A01G411500 chr7B 93.679 443 27 1 1436 1878 65083218 65083659 0.000000e+00 662
51 TraesCS7A01G411500 chr7B 96.190 315 11 1 2382 2695 642005420 642005734 7.610000e-142 514
52 TraesCS7A01G411500 chr7B 88.978 372 33 3 1000 1369 65082831 65083196 1.680000e-123 453
53 TraesCS7A01G411500 chr7B 91.279 172 12 2 2032 2203 610204651 610204483 8.580000e-57 231
54 TraesCS7A01G411500 chr1A 90.138 507 38 4 1374 1878 220290985 220291481 0.000000e+00 649
55 TraesCS7A01G411500 chr1A 89.911 337 27 3 1031 1366 220290675 220291005 1.020000e-115 427
56 TraesCS7A01G411500 chr1A 91.124 169 13 2 2037 2204 573063843 573063676 1.110000e-55 228
57 TraesCS7A01G411500 chr5D 91.373 255 20 2 3717 3971 484039123 484038871 8.170000e-92 348
58 TraesCS7A01G411500 chr5D 90.588 255 23 1 3717 3971 79615811 79616064 1.770000e-88 337
59 TraesCS7A01G411500 chr5D 94.839 155 6 2 6 160 199060296 199060144 1.430000e-59 241
60 TraesCS7A01G411500 chr5D 94.304 158 7 2 3 160 282944577 282944732 1.430000e-59 241
61 TraesCS7A01G411500 chr5D 83.770 191 23 6 254 439 79613933 79614120 1.470000e-39 174
62 TraesCS7A01G411500 chr4B 93.860 228 14 0 2159 2386 208920159 208919932 1.060000e-90 344
63 TraesCS7A01G411500 chr4B 91.165 249 21 1 3723 3971 576635014 576634767 1.770000e-88 337
64 TraesCS7A01G411500 chr4B 91.071 168 12 2 2037 2204 655274302 655274466 1.440000e-54 224
65 TraesCS7A01G411500 chr2B 83.648 318 38 7 254 566 749004426 749004118 1.810000e-73 287
66 TraesCS7A01G411500 chr2B 79.326 445 58 22 3282 3706 320505527 320505097 8.400000e-72 281
67 TraesCS7A01G411500 chr2B 94.937 158 6 2 3 160 133472977 133473132 3.060000e-61 246
68 TraesCS7A01G411500 chr3A 84.965 286 33 7 254 534 689417640 689417360 8.400000e-72 281
69 TraesCS7A01G411500 chr3A 81.191 319 37 12 254 567 301807609 301807309 6.630000e-58 235
70 TraesCS7A01G411500 chr3A 82.890 263 38 5 254 511 499569198 499569458 3.090000e-56 230
71 TraesCS7A01G411500 chrUn 94.937 158 6 2 3 160 63130480 63130635 3.060000e-61 246
72 TraesCS7A01G411500 chr4D 94.839 155 6 2 6 160 318874252 318874100 1.430000e-59 241
73 TraesCS7A01G411500 chr1B 91.329 173 12 2 2032 2204 659234949 659234780 2.390000e-57 233
74 TraesCS7A01G411500 chr2D 90.909 154 14 0 1878 2031 545484501 545484654 1.450000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G411500 chr7A 602272295 602276265 3970 True 3329.500000 5489 100.000000 1 3971 2 chr7A.!!$R2 3970
1 TraesCS7A01G411500 chr3D 134543245 134545065 1820 True 1283.000000 2200 94.971500 2159 3822 2 chr3D.!!$R2 1663
2 TraesCS7A01G411500 chr6B 44522447 44524524 2077 False 1342.000000 2174 92.424000 2042 3971 2 chr6B.!!$F2 1929
3 TraesCS7A01G411500 chr6B 455774840 455776958 2118 False 1194.500000 1932 89.979000 2050 3971 2 chr6B.!!$F3 1921
4 TraesCS7A01G411500 chr2A 37682683 37684621 1938 True 871.666667 1707 92.866000 2159 3971 3 chr2A.!!$R2 1812
5 TraesCS7A01G411500 chr2A 687510450 687511608 1158 True 443.333333 627 91.754000 1881 2823 3 chr2A.!!$R3 942
6 TraesCS7A01G411500 chr6A 578662137 578664692 2555 True 898.333333 1485 92.898667 1000 3752 3 chr6A.!!$R1 2752
7 TraesCS7A01G411500 chr5B 25707110 25708510 1400 False 942.500000 1434 93.082000 2050 3293 2 chr5B.!!$F1 1243
8 TraesCS7A01G411500 chr6D 59755383 59756296 913 True 1247.000000 1247 91.230000 3042 3970 1 chr6D.!!$R1 928
9 TraesCS7A01G411500 chr7D 429957630 429958539 909 True 1238.000000 1238 91.104000 3042 3970 1 chr7D.!!$R2 928
10 TraesCS7A01G411500 chr7D 590428846 590429466 620 False 754.000000 754 88.676000 1061 1681 1 chr7D.!!$F3 620
11 TraesCS7A01G411500 chr1D 369480886 369481797 911 True 1190.000000 1190 90.150000 3042 3970 1 chr1D.!!$R1 928
12 TraesCS7A01G411500 chr3B 693814031 693815707 1676 True 805.000000 1164 89.426000 2053 3971 2 chr3B.!!$R2 1918
13 TraesCS7A01G411500 chr3B 137275359 137276196 837 False 592.500000 699 91.252000 1000 1878 2 chr3B.!!$F3 878
14 TraesCS7A01G411500 chr7B 665413659 665414430 771 False 845.000000 845 86.658000 1061 1833 1 chr7B.!!$F2 772
15 TraesCS7A01G411500 chr7B 65082831 65083659 828 False 557.500000 662 91.328500 1000 1878 2 chr7B.!!$F3 878
16 TraesCS7A01G411500 chr1A 220290675 220291481 806 False 538.000000 649 90.024500 1031 1878 2 chr1A.!!$F1 847
17 TraesCS7A01G411500 chr5D 79613933 79616064 2131 False 255.500000 337 87.179000 254 3971 2 chr5D.!!$F2 3717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 595 0.030101 CGCCTCCTTCGTCTCATCTC 59.970 60.0 0.0 0.0 0.00 2.75 F
1338 1617 0.036388 GCCTTCTCCATCACCAACGA 60.036 55.0 0.0 0.0 0.00 3.85 F
2035 2754 0.178995 TGAATTGCCACTGCCAGTCA 60.179 50.0 0.0 0.0 35.23 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2735 0.178995 TGACTGGCAGTGGCAATTCA 60.179 50.0 27.45 20.83 43.71 2.57 R
2954 4185 0.596577 AGCGCTTAACTCGACACTCA 59.403 50.0 2.64 0.00 0.00 3.41 R
3946 5248 0.169009 GGTCGCTGAAAGGTCATTGC 59.831 55.0 0.00 0.00 31.85 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.133790 ACGTAGAGTCGTACCAATGGC 59.866 52.381 0.00 0.00 42.35 4.40
30 31 1.133598 CGTAGAGTCGTACCAATGGCA 59.866 52.381 0.00 0.00 0.00 4.92
31 32 2.794981 CGTAGAGTCGTACCAATGGCAG 60.795 54.545 0.00 0.00 0.00 4.85
32 33 1.557099 AGAGTCGTACCAATGGCAGA 58.443 50.000 0.00 0.00 0.00 4.26
33 34 2.111384 AGAGTCGTACCAATGGCAGAT 58.889 47.619 0.00 0.00 0.00 2.90
34 35 3.296854 AGAGTCGTACCAATGGCAGATA 58.703 45.455 0.00 0.00 0.00 1.98
35 36 3.319405 AGAGTCGTACCAATGGCAGATAG 59.681 47.826 0.00 0.00 0.00 2.08
36 37 2.365617 AGTCGTACCAATGGCAGATAGG 59.634 50.000 0.00 0.00 0.00 2.57
37 38 2.364324 GTCGTACCAATGGCAGATAGGA 59.636 50.000 0.00 0.00 0.00 2.94
38 39 2.364324 TCGTACCAATGGCAGATAGGAC 59.636 50.000 0.00 0.00 0.00 3.85
39 40 2.365617 CGTACCAATGGCAGATAGGACT 59.634 50.000 0.00 0.00 0.00 3.85
40 41 3.181465 CGTACCAATGGCAGATAGGACTT 60.181 47.826 0.00 0.00 0.00 3.01
41 42 3.287867 ACCAATGGCAGATAGGACTTG 57.712 47.619 0.00 0.00 0.00 3.16
42 43 2.846206 ACCAATGGCAGATAGGACTTGA 59.154 45.455 0.00 0.00 0.00 3.02
43 44 3.118112 ACCAATGGCAGATAGGACTTGAG 60.118 47.826 0.00 0.00 0.00 3.02
44 45 3.135348 CCAATGGCAGATAGGACTTGAGA 59.865 47.826 0.00 0.00 0.00 3.27
45 46 4.378774 CAATGGCAGATAGGACTTGAGAG 58.621 47.826 0.00 0.00 0.00 3.20
46 47 3.388552 TGGCAGATAGGACTTGAGAGA 57.611 47.619 0.00 0.00 0.00 3.10
47 48 3.713003 TGGCAGATAGGACTTGAGAGAA 58.287 45.455 0.00 0.00 0.00 2.87
48 49 4.293494 TGGCAGATAGGACTTGAGAGAAT 58.707 43.478 0.00 0.00 0.00 2.40
49 50 5.458595 TGGCAGATAGGACTTGAGAGAATA 58.541 41.667 0.00 0.00 0.00 1.75
50 51 6.080682 TGGCAGATAGGACTTGAGAGAATAT 58.919 40.000 0.00 0.00 0.00 1.28
51 52 6.556495 TGGCAGATAGGACTTGAGAGAATATT 59.444 38.462 0.00 0.00 0.00 1.28
52 53 6.873076 GGCAGATAGGACTTGAGAGAATATTG 59.127 42.308 0.00 0.00 0.00 1.90
53 54 7.256119 GGCAGATAGGACTTGAGAGAATATTGA 60.256 40.741 0.00 0.00 0.00 2.57
54 55 8.313292 GCAGATAGGACTTGAGAGAATATTGAT 58.687 37.037 0.00 0.00 0.00 2.57
55 56 9.859427 CAGATAGGACTTGAGAGAATATTGATC 57.141 37.037 0.00 0.00 0.00 2.92
56 57 9.827198 AGATAGGACTTGAGAGAATATTGATCT 57.173 33.333 0.00 0.00 0.00 2.75
60 61 8.646900 AGGACTTGAGAGAATATTGATCTTACC 58.353 37.037 0.00 0.00 0.00 2.85
61 62 8.646900 GGACTTGAGAGAATATTGATCTTACCT 58.353 37.037 0.00 0.00 0.00 3.08
66 67 9.988815 TGAGAGAATATTGATCTTACCTTTAGC 57.011 33.333 0.00 0.00 0.00 3.09
69 70 9.430623 GAGAATATTGATCTTACCTTTAGCTCC 57.569 37.037 0.00 0.00 0.00 4.70
70 71 9.165057 AGAATATTGATCTTACCTTTAGCTCCT 57.835 33.333 0.00 0.00 0.00 3.69
71 72 9.785982 GAATATTGATCTTACCTTTAGCTCCTT 57.214 33.333 0.00 0.00 0.00 3.36
72 73 9.566432 AATATTGATCTTACCTTTAGCTCCTTG 57.434 33.333 0.00 0.00 0.00 3.61
73 74 6.374417 TTGATCTTACCTTTAGCTCCTTGT 57.626 37.500 0.00 0.00 0.00 3.16
74 75 5.734720 TGATCTTACCTTTAGCTCCTTGTG 58.265 41.667 0.00 0.00 0.00 3.33
75 76 5.483937 TGATCTTACCTTTAGCTCCTTGTGA 59.516 40.000 0.00 0.00 0.00 3.58
76 77 5.407407 TCTTACCTTTAGCTCCTTGTGAG 57.593 43.478 0.00 0.00 44.47 3.51
77 78 4.838986 TCTTACCTTTAGCTCCTTGTGAGT 59.161 41.667 0.00 0.00 43.48 3.41
78 79 5.307196 TCTTACCTTTAGCTCCTTGTGAGTT 59.693 40.000 0.00 0.00 43.48 3.01
79 80 4.009370 ACCTTTAGCTCCTTGTGAGTTC 57.991 45.455 0.00 0.00 43.48 3.01
80 81 2.996621 CCTTTAGCTCCTTGTGAGTTCG 59.003 50.000 0.00 0.00 43.48 3.95
81 82 3.306088 CCTTTAGCTCCTTGTGAGTTCGA 60.306 47.826 0.00 0.00 43.48 3.71
82 83 4.499183 CTTTAGCTCCTTGTGAGTTCGAT 58.501 43.478 0.00 0.00 43.48 3.59
83 84 5.394224 CCTTTAGCTCCTTGTGAGTTCGATA 60.394 44.000 0.00 0.00 43.48 2.92
84 85 3.512033 AGCTCCTTGTGAGTTCGATAC 57.488 47.619 0.00 0.00 43.48 2.24
85 86 3.093057 AGCTCCTTGTGAGTTCGATACT 58.907 45.455 0.00 0.00 43.48 2.12
99 100 8.101654 GAGTTCGATACTCCATACTTATCACT 57.898 38.462 13.53 0.00 46.30 3.41
100 101 8.466617 AGTTCGATACTCCATACTTATCACTT 57.533 34.615 0.00 0.00 28.23 3.16
101 102 8.569641 AGTTCGATACTCCATACTTATCACTTC 58.430 37.037 0.00 0.00 28.23 3.01
102 103 7.450124 TCGATACTCCATACTTATCACTTCC 57.550 40.000 0.00 0.00 0.00 3.46
103 104 7.002276 TCGATACTCCATACTTATCACTTCCA 58.998 38.462 0.00 0.00 0.00 3.53
104 105 7.040617 TCGATACTCCATACTTATCACTTCCAC 60.041 40.741 0.00 0.00 0.00 4.02
105 106 5.615925 ACTCCATACTTATCACTTCCACC 57.384 43.478 0.00 0.00 0.00 4.61
106 107 4.099573 ACTCCATACTTATCACTTCCACCG 59.900 45.833 0.00 0.00 0.00 4.94
107 108 4.028131 TCCATACTTATCACTTCCACCGT 58.972 43.478 0.00 0.00 0.00 4.83
108 109 4.468510 TCCATACTTATCACTTCCACCGTT 59.531 41.667 0.00 0.00 0.00 4.44
109 110 4.570772 CCATACTTATCACTTCCACCGTTG 59.429 45.833 0.00 0.00 0.00 4.10
110 111 3.053831 ACTTATCACTTCCACCGTTGG 57.946 47.619 0.00 0.00 45.56 3.77
121 122 2.241259 CACCGTTGGAAATTGCTACG 57.759 50.000 13.42 13.42 0.00 3.51
122 123 1.801771 CACCGTTGGAAATTGCTACGA 59.198 47.619 20.40 0.00 34.36 3.43
123 124 2.418628 CACCGTTGGAAATTGCTACGAT 59.581 45.455 20.40 2.68 34.36 3.73
124 125 2.418628 ACCGTTGGAAATTGCTACGATG 59.581 45.455 20.40 9.04 34.36 3.84
125 126 2.675844 CCGTTGGAAATTGCTACGATGA 59.324 45.455 20.40 0.00 34.36 2.92
126 127 3.312421 CCGTTGGAAATTGCTACGATGAT 59.688 43.478 20.40 0.00 34.36 2.45
127 128 4.201910 CCGTTGGAAATTGCTACGATGATT 60.202 41.667 20.40 0.00 34.36 2.57
128 129 4.963953 CGTTGGAAATTGCTACGATGATTC 59.036 41.667 14.92 0.00 34.36 2.52
129 130 5.273944 GTTGGAAATTGCTACGATGATTCC 58.726 41.667 0.00 0.00 36.30 3.01
130 131 3.882888 TGGAAATTGCTACGATGATTCCC 59.117 43.478 0.00 0.00 35.18 3.97
131 132 4.137543 GGAAATTGCTACGATGATTCCCT 58.862 43.478 0.00 0.00 30.94 4.20
132 133 4.023707 GGAAATTGCTACGATGATTCCCTG 60.024 45.833 0.00 0.00 30.94 4.45
133 134 1.953559 TTGCTACGATGATTCCCTGC 58.046 50.000 0.00 0.00 0.00 4.85
134 135 0.829990 TGCTACGATGATTCCCTGCA 59.170 50.000 0.00 0.00 0.00 4.41
135 136 1.221414 GCTACGATGATTCCCTGCAC 58.779 55.000 0.00 0.00 0.00 4.57
136 137 1.202580 GCTACGATGATTCCCTGCACT 60.203 52.381 0.00 0.00 0.00 4.40
137 138 2.743183 GCTACGATGATTCCCTGCACTT 60.743 50.000 0.00 0.00 0.00 3.16
138 139 1.742761 ACGATGATTCCCTGCACTTG 58.257 50.000 0.00 0.00 0.00 3.16
139 140 1.278985 ACGATGATTCCCTGCACTTGA 59.721 47.619 0.00 0.00 0.00 3.02
140 141 1.938577 CGATGATTCCCTGCACTTGAG 59.061 52.381 0.00 0.00 0.00 3.02
141 142 2.295885 GATGATTCCCTGCACTTGAGG 58.704 52.381 0.00 0.00 0.00 3.86
142 143 1.361204 TGATTCCCTGCACTTGAGGA 58.639 50.000 0.00 0.00 31.48 3.71
143 144 1.918262 TGATTCCCTGCACTTGAGGAT 59.082 47.619 0.00 0.00 31.48 3.24
144 145 2.309755 TGATTCCCTGCACTTGAGGATT 59.690 45.455 0.00 0.00 31.48 3.01
145 146 3.523157 TGATTCCCTGCACTTGAGGATTA 59.477 43.478 0.00 0.00 31.48 1.75
146 147 4.166725 TGATTCCCTGCACTTGAGGATTAT 59.833 41.667 0.00 0.00 31.48 1.28
147 148 3.845781 TCCCTGCACTTGAGGATTATC 57.154 47.619 0.00 0.00 31.48 1.75
148 149 3.114606 TCCCTGCACTTGAGGATTATCA 58.885 45.455 0.00 0.00 31.48 2.15
149 150 3.523157 TCCCTGCACTTGAGGATTATCAA 59.477 43.478 0.00 0.00 37.60 2.57
150 151 4.166725 TCCCTGCACTTGAGGATTATCAAT 59.833 41.667 0.00 0.00 38.47 2.57
151 152 4.277672 CCCTGCACTTGAGGATTATCAATG 59.722 45.833 0.00 0.00 38.47 2.82
152 153 4.261489 CCTGCACTTGAGGATTATCAATGC 60.261 45.833 12.67 12.67 38.47 3.56
153 154 4.529897 TGCACTTGAGGATTATCAATGCT 58.470 39.130 16.90 0.00 42.69 3.79
154 155 4.951715 TGCACTTGAGGATTATCAATGCTT 59.048 37.500 16.90 0.00 39.87 3.91
155 156 5.066893 TGCACTTGAGGATTATCAATGCTTC 59.933 40.000 16.90 0.00 39.87 3.86
156 157 5.298777 GCACTTGAGGATTATCAATGCTTCT 59.701 40.000 12.45 0.00 39.87 2.85
157 158 6.183360 GCACTTGAGGATTATCAATGCTTCTT 60.183 38.462 12.45 0.00 39.87 2.52
158 159 7.630082 GCACTTGAGGATTATCAATGCTTCTTT 60.630 37.037 12.45 0.00 39.87 2.52
159 160 8.248945 CACTTGAGGATTATCAATGCTTCTTTT 58.751 33.333 0.00 0.00 39.87 2.27
160 161 8.810041 ACTTGAGGATTATCAATGCTTCTTTTT 58.190 29.630 0.00 0.00 39.87 1.94
248 249 9.597170 CAATACATAGATATGAGAGGTGAATGG 57.403 37.037 6.84 0.00 37.15 3.16
249 250 9.552695 AATACATAGATATGAGAGGTGAATGGA 57.447 33.333 6.84 0.00 37.15 3.41
250 251 7.862274 ACATAGATATGAGAGGTGAATGGAA 57.138 36.000 6.84 0.00 37.15 3.53
251 252 8.267620 ACATAGATATGAGAGGTGAATGGAAA 57.732 34.615 6.84 0.00 37.15 3.13
252 253 8.153550 ACATAGATATGAGAGGTGAATGGAAAC 58.846 37.037 6.84 0.00 37.15 2.78
318 319 8.945481 ATATTTTTGAAAAATGATGCGATCCA 57.055 26.923 22.30 2.60 0.00 3.41
330 331 5.679734 GATGCGATCCATCTTTACAACAT 57.320 39.130 13.77 0.00 45.58 2.71
367 372 6.816616 TTTAAAAGGTTGGAGAATTGGGTT 57.183 33.333 0.00 0.00 0.00 4.11
369 374 2.200373 AGGTTGGAGAATTGGGTTCG 57.800 50.000 0.00 0.00 41.84 3.95
385 390 6.902771 TGGGTTCGAATTTTAAAGATTCCA 57.097 33.333 0.00 5.74 31.35 3.53
388 393 5.511729 GGTTCGAATTTTAAAGATTCCAGCG 59.488 40.000 0.00 0.00 31.35 5.18
390 395 3.478516 CGAATTTTAAAGATTCCAGCGCG 59.521 43.478 0.00 0.00 31.35 6.86
394 399 4.695217 TTTAAAGATTCCAGCGCGAAAT 57.305 36.364 12.10 2.88 0.00 2.17
400 405 0.390078 TTCCAGCGCGAAATAACCGA 60.390 50.000 12.10 0.00 0.00 4.69
413 418 3.627395 ATAACCGACCAATGAGAAGCA 57.373 42.857 0.00 0.00 0.00 3.91
434 439 1.024579 GGAACCACAATCACGCGGAT 61.025 55.000 12.47 7.73 38.05 4.18
435 440 0.373716 GAACCACAATCACGCGGATC 59.626 55.000 12.47 0.00 34.28 3.36
436 441 0.321210 AACCACAATCACGCGGATCA 60.321 50.000 12.47 0.00 34.28 2.92
437 442 1.019278 ACCACAATCACGCGGATCAC 61.019 55.000 12.47 0.00 34.28 3.06
438 443 1.705337 CCACAATCACGCGGATCACC 61.705 60.000 12.47 0.00 34.28 4.02
439 444 0.740868 CACAATCACGCGGATCACCT 60.741 55.000 12.47 0.00 34.28 4.00
440 445 0.821517 ACAATCACGCGGATCACCTA 59.178 50.000 12.47 0.00 34.28 3.08
441 446 1.202417 ACAATCACGCGGATCACCTAG 60.202 52.381 12.47 0.00 34.28 3.02
442 447 1.112113 AATCACGCGGATCACCTAGT 58.888 50.000 12.47 0.00 34.28 2.57
443 448 0.669077 ATCACGCGGATCACCTAGTC 59.331 55.000 12.47 0.00 0.00 2.59
444 449 0.678684 TCACGCGGATCACCTAGTCA 60.679 55.000 12.47 0.00 0.00 3.41
445 450 0.248661 CACGCGGATCACCTAGTCAG 60.249 60.000 12.47 0.00 0.00 3.51
446 451 0.393944 ACGCGGATCACCTAGTCAGA 60.394 55.000 12.47 0.00 0.00 3.27
447 452 0.738975 CGCGGATCACCTAGTCAGAA 59.261 55.000 0.00 0.00 0.00 3.02
448 453 1.134367 CGCGGATCACCTAGTCAGAAA 59.866 52.381 0.00 0.00 0.00 2.52
449 454 2.541556 GCGGATCACCTAGTCAGAAAC 58.458 52.381 0.00 0.00 0.00 2.78
450 455 2.798680 CGGATCACCTAGTCAGAAACG 58.201 52.381 0.00 0.00 0.00 3.60
451 456 2.422479 CGGATCACCTAGTCAGAAACGA 59.578 50.000 0.00 0.00 0.00 3.85
452 457 3.066900 CGGATCACCTAGTCAGAAACGAT 59.933 47.826 0.00 0.00 0.00 3.73
453 458 4.612943 GGATCACCTAGTCAGAAACGATC 58.387 47.826 0.00 0.00 0.00 3.69
454 459 4.500035 GGATCACCTAGTCAGAAACGATCC 60.500 50.000 0.00 0.00 40.51 3.36
455 460 2.422479 TCACCTAGTCAGAAACGATCCG 59.578 50.000 0.00 0.00 0.00 4.18
456 461 2.422479 CACCTAGTCAGAAACGATCCGA 59.578 50.000 0.00 0.00 0.00 4.55
457 462 2.683867 ACCTAGTCAGAAACGATCCGAG 59.316 50.000 0.00 0.00 0.00 4.63
458 463 2.541999 CCTAGTCAGAAACGATCCGAGC 60.542 54.545 0.00 0.00 0.00 5.03
459 464 0.173708 AGTCAGAAACGATCCGAGCC 59.826 55.000 0.00 0.00 0.00 4.70
460 465 0.108804 GTCAGAAACGATCCGAGCCA 60.109 55.000 0.00 0.00 0.00 4.75
461 466 0.824109 TCAGAAACGATCCGAGCCAT 59.176 50.000 0.00 0.00 0.00 4.40
462 467 1.202417 TCAGAAACGATCCGAGCCATC 60.202 52.381 0.00 0.00 0.00 3.51
463 468 0.105039 AGAAACGATCCGAGCCATCC 59.895 55.000 0.00 0.00 0.00 3.51
464 469 0.179084 GAAACGATCCGAGCCATCCA 60.179 55.000 0.00 0.00 0.00 3.41
465 470 0.469917 AAACGATCCGAGCCATCCAT 59.530 50.000 0.00 0.00 0.00 3.41
466 471 0.034059 AACGATCCGAGCCATCCATC 59.966 55.000 0.00 0.00 0.00 3.51
467 472 1.115326 ACGATCCGAGCCATCCATCA 61.115 55.000 0.00 0.00 0.00 3.07
468 473 0.668706 CGATCCGAGCCATCCATCAC 60.669 60.000 0.00 0.00 0.00 3.06
469 474 0.394192 GATCCGAGCCATCCATCACA 59.606 55.000 0.00 0.00 0.00 3.58
470 475 0.107456 ATCCGAGCCATCCATCACAC 59.893 55.000 0.00 0.00 0.00 3.82
471 476 1.221566 CCGAGCCATCCATCACACA 59.778 57.895 0.00 0.00 0.00 3.72
472 477 1.091771 CCGAGCCATCCATCACACAC 61.092 60.000 0.00 0.00 0.00 3.82
473 478 1.091771 CGAGCCATCCATCACACACC 61.092 60.000 0.00 0.00 0.00 4.16
474 479 0.749454 GAGCCATCCATCACACACCC 60.749 60.000 0.00 0.00 0.00 4.61
475 480 1.001020 GCCATCCATCACACACCCA 60.001 57.895 0.00 0.00 0.00 4.51
476 481 0.396139 GCCATCCATCACACACCCAT 60.396 55.000 0.00 0.00 0.00 4.00
477 482 1.683943 CCATCCATCACACACCCATC 58.316 55.000 0.00 0.00 0.00 3.51
478 483 1.064537 CCATCCATCACACACCCATCA 60.065 52.381 0.00 0.00 0.00 3.07
479 484 2.621147 CCATCCATCACACACCCATCAA 60.621 50.000 0.00 0.00 0.00 2.57
480 485 2.198827 TCCATCACACACCCATCAAC 57.801 50.000 0.00 0.00 0.00 3.18
481 486 0.804364 CCATCACACACCCATCAACG 59.196 55.000 0.00 0.00 0.00 4.10
482 487 1.610363 CCATCACACACCCATCAACGA 60.610 52.381 0.00 0.00 0.00 3.85
483 488 2.358957 CATCACACACCCATCAACGAT 58.641 47.619 0.00 0.00 0.00 3.73
484 489 1.807139 TCACACACCCATCAACGATG 58.193 50.000 0.00 0.00 39.52 3.84
504 509 2.017782 GGAGCTTCTCCCGAAAAATCC 58.982 52.381 1.44 0.00 44.36 3.01
505 510 2.618045 GGAGCTTCTCCCGAAAAATCCA 60.618 50.000 1.44 0.00 44.36 3.41
506 511 3.081804 GAGCTTCTCCCGAAAAATCCAA 58.918 45.455 0.00 0.00 0.00 3.53
507 512 3.496331 AGCTTCTCCCGAAAAATCCAAA 58.504 40.909 0.00 0.00 0.00 3.28
508 513 3.255888 AGCTTCTCCCGAAAAATCCAAAC 59.744 43.478 0.00 0.00 0.00 2.93
509 514 3.614150 GCTTCTCCCGAAAAATCCAAACC 60.614 47.826 0.00 0.00 0.00 3.27
510 515 2.521126 TCTCCCGAAAAATCCAAACCC 58.479 47.619 0.00 0.00 0.00 4.11
511 516 2.109304 TCTCCCGAAAAATCCAAACCCT 59.891 45.455 0.00 0.00 0.00 4.34
512 517 3.331294 TCTCCCGAAAAATCCAAACCCTA 59.669 43.478 0.00 0.00 0.00 3.53
513 518 4.083565 CTCCCGAAAAATCCAAACCCTAA 58.916 43.478 0.00 0.00 0.00 2.69
514 519 3.827876 TCCCGAAAAATCCAAACCCTAAC 59.172 43.478 0.00 0.00 0.00 2.34
515 520 3.056393 CCCGAAAAATCCAAACCCTAACC 60.056 47.826 0.00 0.00 0.00 2.85
516 521 3.574826 CCGAAAAATCCAAACCCTAACCA 59.425 43.478 0.00 0.00 0.00 3.67
517 522 4.321675 CCGAAAAATCCAAACCCTAACCAG 60.322 45.833 0.00 0.00 0.00 4.00
518 523 4.566004 GAAAAATCCAAACCCTAACCAGC 58.434 43.478 0.00 0.00 0.00 4.85
519 524 2.990740 AATCCAAACCCTAACCAGCA 57.009 45.000 0.00 0.00 0.00 4.41
520 525 2.215942 ATCCAAACCCTAACCAGCAC 57.784 50.000 0.00 0.00 0.00 4.40
521 526 0.111639 TCCAAACCCTAACCAGCACC 59.888 55.000 0.00 0.00 0.00 5.01
522 527 0.898326 CCAAACCCTAACCAGCACCC 60.898 60.000 0.00 0.00 0.00 4.61
523 528 0.112412 CAAACCCTAACCAGCACCCT 59.888 55.000 0.00 0.00 0.00 4.34
524 529 1.353022 CAAACCCTAACCAGCACCCTA 59.647 52.381 0.00 0.00 0.00 3.53
525 530 1.750022 AACCCTAACCAGCACCCTAA 58.250 50.000 0.00 0.00 0.00 2.69
526 531 0.989602 ACCCTAACCAGCACCCTAAC 59.010 55.000 0.00 0.00 0.00 2.34
527 532 0.255033 CCCTAACCAGCACCCTAACC 59.745 60.000 0.00 0.00 0.00 2.85
528 533 0.255033 CCTAACCAGCACCCTAACCC 59.745 60.000 0.00 0.00 0.00 4.11
529 534 0.988832 CTAACCAGCACCCTAACCCA 59.011 55.000 0.00 0.00 0.00 4.51
530 535 0.694196 TAACCAGCACCCTAACCCAC 59.306 55.000 0.00 0.00 0.00 4.61
531 536 2.076597 AACCAGCACCCTAACCCACC 62.077 60.000 0.00 0.00 0.00 4.61
532 537 2.355115 CAGCACCCTAACCCACCC 59.645 66.667 0.00 0.00 0.00 4.61
533 538 2.121689 AGCACCCTAACCCACCCA 60.122 61.111 0.00 0.00 0.00 4.51
534 539 2.035155 GCACCCTAACCCACCCAC 59.965 66.667 0.00 0.00 0.00 4.61
535 540 2.761160 CACCCTAACCCACCCACC 59.239 66.667 0.00 0.00 0.00 4.61
536 541 2.533492 ACCCTAACCCACCCACCC 60.533 66.667 0.00 0.00 0.00 4.61
537 542 2.533232 CCCTAACCCACCCACCCA 60.533 66.667 0.00 0.00 0.00 4.51
538 543 2.761160 CCTAACCCACCCACCCAC 59.239 66.667 0.00 0.00 0.00 4.61
539 544 2.761160 CTAACCCACCCACCCACC 59.239 66.667 0.00 0.00 0.00 4.61
540 545 2.859971 TAACCCACCCACCCACCC 60.860 66.667 0.00 0.00 0.00 4.61
541 546 3.445679 TAACCCACCCACCCACCCT 62.446 63.158 0.00 0.00 0.00 4.34
545 550 4.016706 CACCCACCCACCCTCGTC 62.017 72.222 0.00 0.00 0.00 4.20
548 553 3.391382 CCACCCACCCTCGTCCTC 61.391 72.222 0.00 0.00 0.00 3.71
549 554 2.283966 CACCCACCCTCGTCCTCT 60.284 66.667 0.00 0.00 0.00 3.69
550 555 2.037527 ACCCACCCTCGTCCTCTC 59.962 66.667 0.00 0.00 0.00 3.20
551 556 2.760385 CCCACCCTCGTCCTCTCC 60.760 72.222 0.00 0.00 0.00 3.71
552 557 2.760385 CCACCCTCGTCCTCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
553 558 2.037367 CACCCTCGTCCTCTCCCA 59.963 66.667 0.00 0.00 0.00 4.37
554 559 1.381872 CACCCTCGTCCTCTCCCAT 60.382 63.158 0.00 0.00 0.00 4.00
555 560 0.978146 CACCCTCGTCCTCTCCCATT 60.978 60.000 0.00 0.00 0.00 3.16
556 561 0.688087 ACCCTCGTCCTCTCCCATTC 60.688 60.000 0.00 0.00 0.00 2.67
557 562 1.403687 CCCTCGTCCTCTCCCATTCC 61.404 65.000 0.00 0.00 0.00 3.01
558 563 1.403687 CCTCGTCCTCTCCCATTCCC 61.404 65.000 0.00 0.00 0.00 3.97
559 564 1.382695 TCGTCCTCTCCCATTCCCC 60.383 63.158 0.00 0.00 0.00 4.81
560 565 1.689233 CGTCCTCTCCCATTCCCCA 60.689 63.158 0.00 0.00 0.00 4.96
561 566 1.690219 CGTCCTCTCCCATTCCCCAG 61.690 65.000 0.00 0.00 0.00 4.45
562 567 0.326618 GTCCTCTCCCATTCCCCAGA 60.327 60.000 0.00 0.00 0.00 3.86
563 568 0.649992 TCCTCTCCCATTCCCCAGAT 59.350 55.000 0.00 0.00 0.00 2.90
564 569 1.063183 CCTCTCCCATTCCCCAGATC 58.937 60.000 0.00 0.00 0.00 2.75
565 570 1.063183 CTCTCCCATTCCCCAGATCC 58.937 60.000 0.00 0.00 0.00 3.36
566 571 0.764369 TCTCCCATTCCCCAGATCCG 60.764 60.000 0.00 0.00 0.00 4.18
567 572 2.113986 CCCATTCCCCAGATCCGC 59.886 66.667 0.00 0.00 0.00 5.54
568 573 2.113986 CCATTCCCCAGATCCGCC 59.886 66.667 0.00 0.00 0.00 6.13
569 574 2.113986 CATTCCCCAGATCCGCCC 59.886 66.667 0.00 0.00 0.00 6.13
570 575 3.560251 ATTCCCCAGATCCGCCCG 61.560 66.667 0.00 0.00 0.00 6.13
585 590 4.856607 CCGCGCCTCCTTCGTCTC 62.857 72.222 0.00 0.00 0.00 3.36
586 591 4.116328 CGCGCCTCCTTCGTCTCA 62.116 66.667 0.00 0.00 0.00 3.27
587 592 2.496817 GCGCCTCCTTCGTCTCAT 59.503 61.111 0.00 0.00 0.00 2.90
588 593 1.590259 GCGCCTCCTTCGTCTCATC 60.590 63.158 0.00 0.00 0.00 2.92
589 594 2.010582 GCGCCTCCTTCGTCTCATCT 62.011 60.000 0.00 0.00 0.00 2.90
590 595 0.030101 CGCCTCCTTCGTCTCATCTC 59.970 60.000 0.00 0.00 0.00 2.75
591 596 0.387565 GCCTCCTTCGTCTCATCTCC 59.612 60.000 0.00 0.00 0.00 3.71
592 597 1.036707 CCTCCTTCGTCTCATCTCCC 58.963 60.000 0.00 0.00 0.00 4.30
593 598 1.410932 CCTCCTTCGTCTCATCTCCCT 60.411 57.143 0.00 0.00 0.00 4.20
594 599 1.953686 CTCCTTCGTCTCATCTCCCTC 59.046 57.143 0.00 0.00 0.00 4.30
595 600 1.036707 CCTTCGTCTCATCTCCCTCC 58.963 60.000 0.00 0.00 0.00 4.30
596 601 1.036707 CTTCGTCTCATCTCCCTCCC 58.963 60.000 0.00 0.00 0.00 4.30
597 602 0.752009 TTCGTCTCATCTCCCTCCCG 60.752 60.000 0.00 0.00 0.00 5.14
598 603 2.851071 CGTCTCATCTCCCTCCCGC 61.851 68.421 0.00 0.00 0.00 6.13
599 604 2.519541 TCTCATCTCCCTCCCGCG 60.520 66.667 0.00 0.00 0.00 6.46
600 605 2.519541 CTCATCTCCCTCCCGCGA 60.520 66.667 8.23 0.00 0.00 5.87
601 606 1.905843 CTCATCTCCCTCCCGCGAT 60.906 63.158 8.23 0.00 0.00 4.58
602 607 1.457643 TCATCTCCCTCCCGCGATT 60.458 57.895 8.23 0.00 0.00 3.34
603 608 1.005630 CATCTCCCTCCCGCGATTC 60.006 63.158 8.23 0.00 0.00 2.52
604 609 2.210711 ATCTCCCTCCCGCGATTCC 61.211 63.158 8.23 0.00 0.00 3.01
605 610 3.930012 CTCCCTCCCGCGATTCCC 61.930 72.222 8.23 0.00 0.00 3.97
606 611 4.789173 TCCCTCCCGCGATTCCCA 62.789 66.667 8.23 0.00 0.00 4.37
607 612 4.547367 CCCTCCCGCGATTCCCAC 62.547 72.222 8.23 0.00 0.00 4.61
608 613 4.547367 CCTCCCGCGATTCCCACC 62.547 72.222 8.23 0.00 0.00 4.61
609 614 4.891727 CTCCCGCGATTCCCACCG 62.892 72.222 8.23 0.00 0.00 4.94
1156 1406 2.780693 CTCCTCCCCTCTCACCCA 59.219 66.667 0.00 0.00 0.00 4.51
1168 1431 2.598394 CACCCAAGCCACCACCTG 60.598 66.667 0.00 0.00 0.00 4.00
1171 1434 2.833913 CCCAAGCCACCACCTGTCT 61.834 63.158 0.00 0.00 0.00 3.41
1186 1450 3.208692 ACCTGTCTAGATCTCCCCAATCT 59.791 47.826 0.00 0.00 37.29 2.40
1198 1462 4.776322 CAATCTCGCCCCCGCACA 62.776 66.667 0.00 0.00 34.03 4.57
1218 1482 1.222936 CCAGATCTTGAGGCGGCTT 59.777 57.895 14.76 0.00 0.00 4.35
1334 1613 1.296392 CACGCCTTCTCCATCACCA 59.704 57.895 0.00 0.00 0.00 4.17
1335 1614 0.321564 CACGCCTTCTCCATCACCAA 60.322 55.000 0.00 0.00 0.00 3.67
1336 1615 0.321653 ACGCCTTCTCCATCACCAAC 60.322 55.000 0.00 0.00 0.00 3.77
1337 1616 1.361668 CGCCTTCTCCATCACCAACG 61.362 60.000 0.00 0.00 0.00 4.10
1338 1617 0.036388 GCCTTCTCCATCACCAACGA 60.036 55.000 0.00 0.00 0.00 3.85
1339 1618 2.009042 GCCTTCTCCATCACCAACGAG 61.009 57.143 0.00 0.00 0.00 4.18
1477 1791 4.722700 GTCATGGCCGCCCACTGT 62.723 66.667 7.03 0.00 45.77 3.55
1570 2017 4.462508 TGCTTTGTTTGGTGATGAAACA 57.537 36.364 0.00 0.00 40.65 2.83
1711 2234 4.709250 TGTGTGGCTGAACTAATTGTGTA 58.291 39.130 0.00 0.00 0.00 2.90
1848 2562 7.416664 GCCAAATGGACTAAAAGATAGATGCAA 60.417 37.037 2.98 0.00 37.39 4.08
1899 2613 2.159179 ACTTGGTTCAGCCCTTGTTT 57.841 45.000 0.00 0.00 36.04 2.83
1935 2649 7.446625 AGCTTGACACTCTTCATTTATGTTCTT 59.553 33.333 0.00 0.00 0.00 2.52
1938 2652 7.223584 TGACACTCTTCATTTATGTTCTTGGA 58.776 34.615 0.00 0.00 0.00 3.53
2023 2742 8.452534 TGATTTGCTCCAAATTAATTGAATTGC 58.547 29.630 0.39 4.36 43.05 3.56
2035 2754 0.178995 TGAATTGCCACTGCCAGTCA 60.179 50.000 0.00 0.00 35.23 3.41
2097 2868 2.571212 CAACTGCCACTACCAAGTCAA 58.429 47.619 0.00 0.00 31.97 3.18
2126 2897 3.857157 TTTCTGCCTCAGTGTTTAGGT 57.143 42.857 0.00 0.00 35.16 3.08
2139 2910 6.537301 TCAGTGTTTAGGTTGTTTGTAGACAG 59.463 38.462 0.00 0.00 0.00 3.51
2229 3000 2.027192 GCACAACATCCCCTTCTAGTCA 60.027 50.000 0.00 0.00 0.00 3.41
2230 3001 3.559171 GCACAACATCCCCTTCTAGTCAA 60.559 47.826 0.00 0.00 0.00 3.18
2561 3791 1.669604 TGCATGTACACACACGGTTT 58.330 45.000 0.00 0.00 37.54 3.27
2582 3812 5.840243 TTAGCAAATACCGAGCTGTAGTA 57.160 39.130 0.00 0.00 39.30 1.82
2652 3882 1.157870 GCGTTATGGCGGCTGTGTAT 61.158 55.000 11.43 0.00 0.00 2.29
2788 4018 6.826668 ACCATGTATATGTACTAAGCAGCAA 58.173 36.000 0.00 0.00 32.21 3.91
2904 4135 7.703621 GGATATTCCATGTTCACTGAATGTTTG 59.296 37.037 0.00 0.00 36.28 2.93
2968 4199 9.701098 ACAAGTTAATAATGAGTGTCGAGTTAA 57.299 29.630 0.00 0.00 0.00 2.01
3177 4408 4.571919 ACCGCTTGCTTGTATACTTGTTA 58.428 39.130 4.17 0.00 0.00 2.41
3315 4546 5.059161 TGTTGAAGAAGATTGACAGGAGTG 58.941 41.667 0.00 0.00 0.00 3.51
3415 4657 8.556213 AAATGTATCCGTGTTGTAATACTGTT 57.444 30.769 0.00 0.00 0.00 3.16
3562 4808 4.101119 ACAATTAGGACCCGTCTTATGAGG 59.899 45.833 0.00 0.00 0.00 3.86
3591 4844 4.003648 CCGAAACTATTGAGCCAAGAAGT 58.996 43.478 0.00 0.00 0.00 3.01
3597 4850 2.957402 TTGAGCCAAGAAGTCCATGT 57.043 45.000 0.00 0.00 0.00 3.21
3599 4852 3.228188 TGAGCCAAGAAGTCCATGTTT 57.772 42.857 0.00 0.00 0.00 2.83
3655 4913 4.592778 ACCCATACAGCCAAACAAAATTCT 59.407 37.500 0.00 0.00 0.00 2.40
3773 5061 2.039084 GACCGGGCTGATTCTTATCCAT 59.961 50.000 6.32 0.00 0.00 3.41
3798 5087 1.959042 CTTGCCACGCTGGATTCTAT 58.041 50.000 8.04 0.00 40.96 1.98
3811 5100 2.777692 GGATTCTATGTGGTCTGGGGAA 59.222 50.000 0.00 0.00 0.00 3.97
3834 5123 4.344968 AGGCTGCTAGTGACCAAAATTTTT 59.655 37.500 0.00 0.00 0.00 1.94
3835 5124 5.538433 AGGCTGCTAGTGACCAAAATTTTTA 59.462 36.000 0.00 0.00 0.00 1.52
3895 5195 7.797038 AGGTCGTTAATTTCAGTTTACAACT 57.203 32.000 0.00 0.00 44.06 3.16
3908 5208 6.699575 AGTTTACAACTGTCAGCTTTTGAT 57.300 33.333 8.28 0.00 41.01 2.57
3938 5240 2.553079 TTGTCACAAAAAGGTCGCAC 57.447 45.000 0.00 0.00 0.00 5.34
3946 5248 4.026640 CACAAAAAGGTCGCACATGAAAAG 60.027 41.667 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.355756 GCCATTGGTACGACTCTACGTA 59.644 50.000 4.26 0.00 44.72 3.57
10 11 1.133598 TGCCATTGGTACGACTCTACG 59.866 52.381 4.26 0.00 39.31 3.51
11 12 2.426024 TCTGCCATTGGTACGACTCTAC 59.574 50.000 4.26 0.00 0.00 2.59
12 13 2.730382 TCTGCCATTGGTACGACTCTA 58.270 47.619 4.26 0.00 0.00 2.43
13 14 1.557099 TCTGCCATTGGTACGACTCT 58.443 50.000 4.26 0.00 0.00 3.24
14 15 2.604046 ATCTGCCATTGGTACGACTC 57.396 50.000 4.26 0.00 0.00 3.36
15 16 2.365617 CCTATCTGCCATTGGTACGACT 59.634 50.000 4.26 0.00 0.00 4.18
16 17 2.364324 TCCTATCTGCCATTGGTACGAC 59.636 50.000 4.26 0.00 0.00 4.34
17 18 2.364324 GTCCTATCTGCCATTGGTACGA 59.636 50.000 4.26 0.40 0.00 3.43
18 19 2.365617 AGTCCTATCTGCCATTGGTACG 59.634 50.000 4.26 0.00 0.00 3.67
19 20 4.130118 CAAGTCCTATCTGCCATTGGTAC 58.870 47.826 4.26 0.00 0.00 3.34
20 21 4.037222 TCAAGTCCTATCTGCCATTGGTA 58.963 43.478 4.26 0.00 0.00 3.25
21 22 2.846206 TCAAGTCCTATCTGCCATTGGT 59.154 45.455 4.26 0.00 0.00 3.67
22 23 3.135348 TCTCAAGTCCTATCTGCCATTGG 59.865 47.826 0.00 0.00 0.00 3.16
23 24 4.100653 TCTCTCAAGTCCTATCTGCCATTG 59.899 45.833 0.00 0.00 0.00 2.82
24 25 4.293494 TCTCTCAAGTCCTATCTGCCATT 58.707 43.478 0.00 0.00 0.00 3.16
25 26 3.921104 TCTCTCAAGTCCTATCTGCCAT 58.079 45.455 0.00 0.00 0.00 4.40
26 27 3.388552 TCTCTCAAGTCCTATCTGCCA 57.611 47.619 0.00 0.00 0.00 4.92
27 28 4.953940 ATTCTCTCAAGTCCTATCTGCC 57.046 45.455 0.00 0.00 0.00 4.85
28 29 7.665690 TCAATATTCTCTCAAGTCCTATCTGC 58.334 38.462 0.00 0.00 0.00 4.26
29 30 9.859427 GATCAATATTCTCTCAAGTCCTATCTG 57.141 37.037 0.00 0.00 0.00 2.90
30 31 9.827198 AGATCAATATTCTCTCAAGTCCTATCT 57.173 33.333 0.00 0.00 0.00 1.98
34 35 8.646900 GGTAAGATCAATATTCTCTCAAGTCCT 58.353 37.037 0.00 0.00 0.00 3.85
35 36 8.646900 AGGTAAGATCAATATTCTCTCAAGTCC 58.353 37.037 0.00 0.00 0.00 3.85
40 41 9.988815 GCTAAAGGTAAGATCAATATTCTCTCA 57.011 33.333 0.00 0.00 0.00 3.27
43 44 9.430623 GGAGCTAAAGGTAAGATCAATATTCTC 57.569 37.037 0.00 0.00 30.94 2.87
44 45 9.165057 AGGAGCTAAAGGTAAGATCAATATTCT 57.835 33.333 0.00 0.00 30.94 2.40
45 46 9.785982 AAGGAGCTAAAGGTAAGATCAATATTC 57.214 33.333 0.00 0.00 30.94 1.75
46 47 9.566432 CAAGGAGCTAAAGGTAAGATCAATATT 57.434 33.333 0.00 0.00 30.94 1.28
47 48 8.718656 ACAAGGAGCTAAAGGTAAGATCAATAT 58.281 33.333 0.00 0.00 30.94 1.28
48 49 7.987458 CACAAGGAGCTAAAGGTAAGATCAATA 59.013 37.037 0.00 0.00 30.94 1.90
49 50 6.825721 CACAAGGAGCTAAAGGTAAGATCAAT 59.174 38.462 0.00 0.00 30.94 2.57
50 51 6.013725 TCACAAGGAGCTAAAGGTAAGATCAA 60.014 38.462 0.00 0.00 30.94 2.57
51 52 5.483937 TCACAAGGAGCTAAAGGTAAGATCA 59.516 40.000 0.00 0.00 30.94 2.92
52 53 5.978814 TCACAAGGAGCTAAAGGTAAGATC 58.021 41.667 0.00 0.00 0.00 2.75
53 54 5.983540 CTCACAAGGAGCTAAAGGTAAGAT 58.016 41.667 0.00 0.00 36.69 2.40
54 55 5.407407 CTCACAAGGAGCTAAAGGTAAGA 57.593 43.478 0.00 0.00 36.69 2.10
75 76 8.466617 AAGTGATAAGTATGGAGTATCGAACT 57.533 34.615 0.00 0.00 42.80 3.01
76 77 7.808856 GGAAGTGATAAGTATGGAGTATCGAAC 59.191 40.741 0.00 0.00 34.37 3.95
77 78 7.504574 TGGAAGTGATAAGTATGGAGTATCGAA 59.495 37.037 0.00 0.00 34.37 3.71
78 79 7.002276 TGGAAGTGATAAGTATGGAGTATCGA 58.998 38.462 0.00 0.00 34.37 3.59
79 80 7.085116 GTGGAAGTGATAAGTATGGAGTATCG 58.915 42.308 0.00 0.00 34.37 2.92
80 81 7.379750 GGTGGAAGTGATAAGTATGGAGTATC 58.620 42.308 0.00 0.00 0.00 2.24
81 82 6.015350 CGGTGGAAGTGATAAGTATGGAGTAT 60.015 42.308 0.00 0.00 0.00 2.12
82 83 5.301045 CGGTGGAAGTGATAAGTATGGAGTA 59.699 44.000 0.00 0.00 0.00 2.59
83 84 4.099573 CGGTGGAAGTGATAAGTATGGAGT 59.900 45.833 0.00 0.00 0.00 3.85
84 85 4.099573 ACGGTGGAAGTGATAAGTATGGAG 59.900 45.833 0.00 0.00 0.00 3.86
85 86 4.028131 ACGGTGGAAGTGATAAGTATGGA 58.972 43.478 0.00 0.00 0.00 3.41
86 87 4.402056 ACGGTGGAAGTGATAAGTATGG 57.598 45.455 0.00 0.00 0.00 2.74
87 88 5.718649 CAACGGTGGAAGTGATAAGTATG 57.281 43.478 0.00 0.00 0.00 2.39
102 103 1.801771 TCGTAGCAATTTCCAACGGTG 59.198 47.619 0.00 0.00 34.47 4.94
103 104 2.172851 TCGTAGCAATTTCCAACGGT 57.827 45.000 1.87 0.00 34.47 4.83
104 105 2.675844 TCATCGTAGCAATTTCCAACGG 59.324 45.455 1.87 0.00 34.47 4.44
105 106 4.536364 ATCATCGTAGCAATTTCCAACG 57.464 40.909 0.00 0.00 34.99 4.10
106 107 5.273944 GGAATCATCGTAGCAATTTCCAAC 58.726 41.667 0.00 0.00 0.00 3.77
107 108 4.338118 GGGAATCATCGTAGCAATTTCCAA 59.662 41.667 0.00 0.00 28.70 3.53
108 109 3.882888 GGGAATCATCGTAGCAATTTCCA 59.117 43.478 0.00 0.00 28.70 3.53
109 110 4.023707 CAGGGAATCATCGTAGCAATTTCC 60.024 45.833 0.00 0.00 0.00 3.13
110 111 4.555511 GCAGGGAATCATCGTAGCAATTTC 60.556 45.833 0.00 0.00 0.00 2.17
111 112 3.316308 GCAGGGAATCATCGTAGCAATTT 59.684 43.478 0.00 0.00 0.00 1.82
112 113 2.880890 GCAGGGAATCATCGTAGCAATT 59.119 45.455 0.00 0.00 0.00 2.32
113 114 2.158769 TGCAGGGAATCATCGTAGCAAT 60.159 45.455 0.00 0.00 0.00 3.56
114 115 1.209261 TGCAGGGAATCATCGTAGCAA 59.791 47.619 0.00 0.00 0.00 3.91
115 116 0.829990 TGCAGGGAATCATCGTAGCA 59.170 50.000 0.00 0.00 0.00 3.49
116 117 1.202580 AGTGCAGGGAATCATCGTAGC 60.203 52.381 0.00 0.00 0.00 3.58
117 118 2.868583 CAAGTGCAGGGAATCATCGTAG 59.131 50.000 0.00 0.00 0.00 3.51
118 119 2.499693 TCAAGTGCAGGGAATCATCGTA 59.500 45.455 0.00 0.00 0.00 3.43
119 120 1.278985 TCAAGTGCAGGGAATCATCGT 59.721 47.619 0.00 0.00 0.00 3.73
120 121 1.938577 CTCAAGTGCAGGGAATCATCG 59.061 52.381 0.00 0.00 0.00 3.84
121 122 2.092753 TCCTCAAGTGCAGGGAATCATC 60.093 50.000 0.00 0.00 0.00 2.92
122 123 1.918262 TCCTCAAGTGCAGGGAATCAT 59.082 47.619 0.00 0.00 0.00 2.45
123 124 1.361204 TCCTCAAGTGCAGGGAATCA 58.639 50.000 0.00 0.00 0.00 2.57
124 125 2.725221 ATCCTCAAGTGCAGGGAATC 57.275 50.000 0.00 0.00 0.00 2.52
125 126 4.166725 TGATAATCCTCAAGTGCAGGGAAT 59.833 41.667 0.00 0.00 0.00 3.01
126 127 3.523157 TGATAATCCTCAAGTGCAGGGAA 59.477 43.478 0.00 0.00 0.00 3.97
127 128 3.114606 TGATAATCCTCAAGTGCAGGGA 58.885 45.455 0.00 0.00 0.00 4.20
128 129 3.565764 TGATAATCCTCAAGTGCAGGG 57.434 47.619 0.00 0.00 0.00 4.45
129 130 4.261489 GCATTGATAATCCTCAAGTGCAGG 60.261 45.833 0.00 0.00 38.47 4.85
130 131 4.579340 AGCATTGATAATCCTCAAGTGCAG 59.421 41.667 16.20 0.00 39.46 4.41
131 132 4.529897 AGCATTGATAATCCTCAAGTGCA 58.470 39.130 16.20 0.00 39.46 4.57
132 133 5.298777 AGAAGCATTGATAATCCTCAAGTGC 59.701 40.000 10.50 10.50 38.47 4.40
133 134 6.939132 AGAAGCATTGATAATCCTCAAGTG 57.061 37.500 0.00 0.00 38.47 3.16
134 135 7.951347 AAAGAAGCATTGATAATCCTCAAGT 57.049 32.000 0.00 0.00 38.47 3.16
222 223 9.597170 CCATTCACCTCTCATATCTATGTATTG 57.403 37.037 0.00 0.00 35.26 1.90
223 224 9.552695 TCCATTCACCTCTCATATCTATGTATT 57.447 33.333 0.00 0.00 35.26 1.89
224 225 9.552695 TTCCATTCACCTCTCATATCTATGTAT 57.447 33.333 0.00 0.00 35.26 2.29
225 226 8.956446 TTCCATTCACCTCTCATATCTATGTA 57.044 34.615 0.00 0.00 35.26 2.29
226 227 7.862274 TTCCATTCACCTCTCATATCTATGT 57.138 36.000 0.00 0.00 35.26 2.29
227 228 8.152898 TGTTTCCATTCACCTCTCATATCTATG 58.847 37.037 0.00 0.00 35.04 2.23
228 229 8.267620 TGTTTCCATTCACCTCTCATATCTAT 57.732 34.615 0.00 0.00 0.00 1.98
229 230 7.675161 TGTTTCCATTCACCTCTCATATCTA 57.325 36.000 0.00 0.00 0.00 1.98
230 231 6.566079 TGTTTCCATTCACCTCTCATATCT 57.434 37.500 0.00 0.00 0.00 1.98
231 232 7.222872 AGATGTTTCCATTCACCTCTCATATC 58.777 38.462 0.00 0.00 0.00 1.63
232 233 7.146715 AGATGTTTCCATTCACCTCTCATAT 57.853 36.000 0.00 0.00 0.00 1.78
233 234 6.566079 AGATGTTTCCATTCACCTCTCATA 57.434 37.500 0.00 0.00 0.00 2.15
234 235 5.447778 AGATGTTTCCATTCACCTCTCAT 57.552 39.130 0.00 0.00 0.00 2.90
235 236 4.916041 AGATGTTTCCATTCACCTCTCA 57.084 40.909 0.00 0.00 0.00 3.27
236 237 5.123027 GTCAAGATGTTTCCATTCACCTCTC 59.877 44.000 0.00 0.00 0.00 3.20
237 238 5.006386 GTCAAGATGTTTCCATTCACCTCT 58.994 41.667 0.00 0.00 0.00 3.69
238 239 4.761739 TGTCAAGATGTTTCCATTCACCTC 59.238 41.667 0.00 0.00 0.00 3.85
239 240 4.728772 TGTCAAGATGTTTCCATTCACCT 58.271 39.130 0.00 0.00 0.00 4.00
240 241 5.649782 ATGTCAAGATGTTTCCATTCACC 57.350 39.130 0.00 0.00 0.00 4.02
241 242 7.951530 AAAATGTCAAGATGTTTCCATTCAC 57.048 32.000 0.00 0.00 0.00 3.18
242 243 8.859090 ACTAAAATGTCAAGATGTTTCCATTCA 58.141 29.630 0.00 0.00 0.00 2.57
243 244 9.696917 AACTAAAATGTCAAGATGTTTCCATTC 57.303 29.630 0.00 0.00 0.00 2.67
301 302 7.195646 TGTAAAGATGGATCGCATCATTTTTC 58.804 34.615 19.83 13.03 32.45 2.29
302 303 7.099266 TGTAAAGATGGATCGCATCATTTTT 57.901 32.000 19.83 15.14 33.93 1.94
307 308 4.512484 TGTTGTAAAGATGGATCGCATCA 58.488 39.130 19.83 0.33 0.00 3.07
309 310 6.524734 TCTATGTTGTAAAGATGGATCGCAT 58.475 36.000 0.00 0.00 32.24 4.73
312 313 8.830580 ACAAATCTATGTTGTAAAGATGGATCG 58.169 33.333 0.00 0.00 44.93 3.69
347 348 3.320826 CGAACCCAATTCTCCAACCTTTT 59.679 43.478 0.00 0.00 34.88 2.27
348 349 2.890945 CGAACCCAATTCTCCAACCTTT 59.109 45.455 0.00 0.00 34.88 3.11
349 350 2.107552 TCGAACCCAATTCTCCAACCTT 59.892 45.455 0.00 0.00 34.88 3.50
351 352 2.194201 TCGAACCCAATTCTCCAACC 57.806 50.000 0.00 0.00 34.88 3.77
352 353 4.783764 AATTCGAACCCAATTCTCCAAC 57.216 40.909 0.00 0.00 34.88 3.77
353 354 5.799827 AAAATTCGAACCCAATTCTCCAA 57.200 34.783 0.00 0.00 34.88 3.53
354 355 6.902771 TTAAAATTCGAACCCAATTCTCCA 57.097 33.333 0.00 0.00 34.88 3.86
355 356 7.599171 TCTTTAAAATTCGAACCCAATTCTCC 58.401 34.615 0.00 0.00 34.88 3.71
360 365 7.902087 TGGAATCTTTAAAATTCGAACCCAAT 58.098 30.769 0.00 0.00 34.58 3.16
364 369 5.511729 CGCTGGAATCTTTAAAATTCGAACC 59.488 40.000 0.00 0.00 34.58 3.62
367 372 4.658071 GCGCTGGAATCTTTAAAATTCGA 58.342 39.130 0.00 9.99 34.58 3.71
369 374 4.658071 TCGCGCTGGAATCTTTAAAATTC 58.342 39.130 5.56 11.52 33.29 2.17
385 390 0.671163 TTGGTCGGTTATTTCGCGCT 60.671 50.000 5.56 0.00 0.00 5.92
388 393 2.933906 TCTCATTGGTCGGTTATTTCGC 59.066 45.455 0.00 0.00 0.00 4.70
390 395 4.394920 TGCTTCTCATTGGTCGGTTATTTC 59.605 41.667 0.00 0.00 0.00 2.17
394 399 3.334691 CTTGCTTCTCATTGGTCGGTTA 58.665 45.455 0.00 0.00 0.00 2.85
400 405 2.158475 TGGTTCCTTGCTTCTCATTGGT 60.158 45.455 0.00 0.00 0.00 3.67
413 418 1.234615 CCGCGTGATTGTGGTTCCTT 61.235 55.000 4.92 0.00 34.75 3.36
434 439 2.422479 CGGATCGTTTCTGACTAGGTGA 59.578 50.000 0.00 0.00 31.81 4.02
435 440 2.422479 TCGGATCGTTTCTGACTAGGTG 59.578 50.000 0.00 0.00 34.70 4.00
436 441 2.683867 CTCGGATCGTTTCTGACTAGGT 59.316 50.000 0.00 0.00 34.70 3.08
437 442 2.541999 GCTCGGATCGTTTCTGACTAGG 60.542 54.545 0.00 0.00 34.70 3.02
438 443 2.541999 GGCTCGGATCGTTTCTGACTAG 60.542 54.545 0.00 0.00 34.70 2.57
439 444 1.404391 GGCTCGGATCGTTTCTGACTA 59.596 52.381 0.00 0.00 34.70 2.59
440 445 0.173708 GGCTCGGATCGTTTCTGACT 59.826 55.000 0.00 0.00 34.70 3.41
441 446 0.108804 TGGCTCGGATCGTTTCTGAC 60.109 55.000 0.00 0.00 34.70 3.51
442 447 0.824109 ATGGCTCGGATCGTTTCTGA 59.176 50.000 0.00 0.87 37.40 3.27
443 448 1.212616 GATGGCTCGGATCGTTTCTG 58.787 55.000 0.00 0.00 0.00 3.02
444 449 0.105039 GGATGGCTCGGATCGTTTCT 59.895 55.000 0.00 0.00 0.00 2.52
445 450 0.179084 TGGATGGCTCGGATCGTTTC 60.179 55.000 0.00 0.00 0.00 2.78
446 451 0.469917 ATGGATGGCTCGGATCGTTT 59.530 50.000 0.00 0.00 0.00 3.60
447 452 0.034059 GATGGATGGCTCGGATCGTT 59.966 55.000 0.00 0.00 0.00 3.85
448 453 1.115326 TGATGGATGGCTCGGATCGT 61.115 55.000 0.00 0.00 0.00 3.73
449 454 0.668706 GTGATGGATGGCTCGGATCG 60.669 60.000 0.00 0.00 0.00 3.69
450 455 0.394192 TGTGATGGATGGCTCGGATC 59.606 55.000 0.00 0.00 0.00 3.36
451 456 0.107456 GTGTGATGGATGGCTCGGAT 59.893 55.000 0.00 0.00 0.00 4.18
452 457 1.264045 TGTGTGATGGATGGCTCGGA 61.264 55.000 0.00 0.00 0.00 4.55
453 458 1.091771 GTGTGTGATGGATGGCTCGG 61.092 60.000 0.00 0.00 0.00 4.63
454 459 1.091771 GGTGTGTGATGGATGGCTCG 61.092 60.000 0.00 0.00 0.00 5.03
455 460 0.749454 GGGTGTGTGATGGATGGCTC 60.749 60.000 0.00 0.00 0.00 4.70
456 461 1.304282 GGGTGTGTGATGGATGGCT 59.696 57.895 0.00 0.00 0.00 4.75
457 462 0.396139 ATGGGTGTGTGATGGATGGC 60.396 55.000 0.00 0.00 0.00 4.40
458 463 1.064537 TGATGGGTGTGTGATGGATGG 60.065 52.381 0.00 0.00 0.00 3.51
459 464 2.423446 TGATGGGTGTGTGATGGATG 57.577 50.000 0.00 0.00 0.00 3.51
460 465 2.726821 GTTGATGGGTGTGTGATGGAT 58.273 47.619 0.00 0.00 0.00 3.41
461 466 1.610363 CGTTGATGGGTGTGTGATGGA 60.610 52.381 0.00 0.00 0.00 3.41
462 467 0.804364 CGTTGATGGGTGTGTGATGG 59.196 55.000 0.00 0.00 0.00 3.51
463 468 1.807139 TCGTTGATGGGTGTGTGATG 58.193 50.000 0.00 0.00 0.00 3.07
464 469 2.358957 CATCGTTGATGGGTGTGTGAT 58.641 47.619 0.00 0.00 36.51 3.06
465 470 1.807139 CATCGTTGATGGGTGTGTGA 58.193 50.000 0.00 0.00 36.51 3.58
490 495 2.109304 AGGGTTTGGATTTTTCGGGAGA 59.891 45.455 0.00 0.00 0.00 3.71
491 496 2.525368 AGGGTTTGGATTTTTCGGGAG 58.475 47.619 0.00 0.00 0.00 4.30
492 497 2.687003 AGGGTTTGGATTTTTCGGGA 57.313 45.000 0.00 0.00 0.00 5.14
493 498 3.056393 GGTTAGGGTTTGGATTTTTCGGG 60.056 47.826 0.00 0.00 0.00 5.14
494 499 3.574826 TGGTTAGGGTTTGGATTTTTCGG 59.425 43.478 0.00 0.00 0.00 4.30
495 500 4.805219 CTGGTTAGGGTTTGGATTTTTCG 58.195 43.478 0.00 0.00 0.00 3.46
496 501 4.039852 TGCTGGTTAGGGTTTGGATTTTTC 59.960 41.667 0.00 0.00 0.00 2.29
497 502 3.970640 TGCTGGTTAGGGTTTGGATTTTT 59.029 39.130 0.00 0.00 0.00 1.94
498 503 3.323691 GTGCTGGTTAGGGTTTGGATTTT 59.676 43.478 0.00 0.00 0.00 1.82
499 504 2.897326 GTGCTGGTTAGGGTTTGGATTT 59.103 45.455 0.00 0.00 0.00 2.17
500 505 2.525368 GTGCTGGTTAGGGTTTGGATT 58.475 47.619 0.00 0.00 0.00 3.01
501 506 1.272480 GGTGCTGGTTAGGGTTTGGAT 60.272 52.381 0.00 0.00 0.00 3.41
502 507 0.111639 GGTGCTGGTTAGGGTTTGGA 59.888 55.000 0.00 0.00 0.00 3.53
503 508 0.898326 GGGTGCTGGTTAGGGTTTGG 60.898 60.000 0.00 0.00 0.00 3.28
504 509 0.112412 AGGGTGCTGGTTAGGGTTTG 59.888 55.000 0.00 0.00 0.00 2.93
505 510 1.750022 TAGGGTGCTGGTTAGGGTTT 58.250 50.000 0.00 0.00 0.00 3.27
506 511 1.353358 GTTAGGGTGCTGGTTAGGGTT 59.647 52.381 0.00 0.00 0.00 4.11
507 512 0.989602 GTTAGGGTGCTGGTTAGGGT 59.010 55.000 0.00 0.00 0.00 4.34
508 513 0.255033 GGTTAGGGTGCTGGTTAGGG 59.745 60.000 0.00 0.00 0.00 3.53
509 514 0.255033 GGGTTAGGGTGCTGGTTAGG 59.745 60.000 0.00 0.00 0.00 2.69
510 515 0.988832 TGGGTTAGGGTGCTGGTTAG 59.011 55.000 0.00 0.00 0.00 2.34
511 516 0.694196 GTGGGTTAGGGTGCTGGTTA 59.306 55.000 0.00 0.00 0.00 2.85
512 517 1.458927 GTGGGTTAGGGTGCTGGTT 59.541 57.895 0.00 0.00 0.00 3.67
513 518 2.535331 GGTGGGTTAGGGTGCTGGT 61.535 63.158 0.00 0.00 0.00 4.00
514 519 2.355115 GGTGGGTTAGGGTGCTGG 59.645 66.667 0.00 0.00 0.00 4.85
515 520 2.355115 GGGTGGGTTAGGGTGCTG 59.645 66.667 0.00 0.00 0.00 4.41
516 521 2.121689 TGGGTGGGTTAGGGTGCT 60.122 61.111 0.00 0.00 0.00 4.40
517 522 2.035155 GTGGGTGGGTTAGGGTGC 59.965 66.667 0.00 0.00 0.00 5.01
518 523 2.761160 GGTGGGTGGGTTAGGGTG 59.239 66.667 0.00 0.00 0.00 4.61
519 524 2.533492 GGGTGGGTGGGTTAGGGT 60.533 66.667 0.00 0.00 0.00 4.34
520 525 2.533232 TGGGTGGGTGGGTTAGGG 60.533 66.667 0.00 0.00 0.00 3.53
521 526 2.761160 GTGGGTGGGTGGGTTAGG 59.239 66.667 0.00 0.00 0.00 2.69
522 527 2.761160 GGTGGGTGGGTGGGTTAG 59.239 66.667 0.00 0.00 0.00 2.34
523 528 2.859971 GGGTGGGTGGGTGGGTTA 60.860 66.667 0.00 0.00 0.00 2.85
524 529 4.875301 AGGGTGGGTGGGTGGGTT 62.875 66.667 0.00 0.00 0.00 4.11
528 533 4.016706 GACGAGGGTGGGTGGGTG 62.017 72.222 0.00 0.00 0.00 4.61
531 536 3.391382 GAGGACGAGGGTGGGTGG 61.391 72.222 0.00 0.00 0.00 4.61
532 537 2.283966 AGAGGACGAGGGTGGGTG 60.284 66.667 0.00 0.00 0.00 4.61
533 538 2.037527 GAGAGGACGAGGGTGGGT 59.962 66.667 0.00 0.00 0.00 4.51
534 539 2.760385 GGAGAGGACGAGGGTGGG 60.760 72.222 0.00 0.00 0.00 4.61
535 540 2.760385 GGGAGAGGACGAGGGTGG 60.760 72.222 0.00 0.00 0.00 4.61
536 541 0.978146 AATGGGAGAGGACGAGGGTG 60.978 60.000 0.00 0.00 0.00 4.61
537 542 0.688087 GAATGGGAGAGGACGAGGGT 60.688 60.000 0.00 0.00 0.00 4.34
538 543 1.403687 GGAATGGGAGAGGACGAGGG 61.404 65.000 0.00 0.00 0.00 4.30
539 544 1.403687 GGGAATGGGAGAGGACGAGG 61.404 65.000 0.00 0.00 0.00 4.63
540 545 1.403687 GGGGAATGGGAGAGGACGAG 61.404 65.000 0.00 0.00 0.00 4.18
541 546 1.382695 GGGGAATGGGAGAGGACGA 60.383 63.158 0.00 0.00 0.00 4.20
542 547 1.689233 TGGGGAATGGGAGAGGACG 60.689 63.158 0.00 0.00 0.00 4.79
543 548 0.326618 TCTGGGGAATGGGAGAGGAC 60.327 60.000 0.00 0.00 0.00 3.85
544 549 0.649992 ATCTGGGGAATGGGAGAGGA 59.350 55.000 0.00 0.00 0.00 3.71
545 550 1.063183 GATCTGGGGAATGGGAGAGG 58.937 60.000 0.00 0.00 0.00 3.69
546 551 1.063183 GGATCTGGGGAATGGGAGAG 58.937 60.000 0.00 0.00 0.00 3.20
547 552 0.764369 CGGATCTGGGGAATGGGAGA 60.764 60.000 0.00 0.00 0.00 3.71
548 553 1.757306 CGGATCTGGGGAATGGGAG 59.243 63.158 0.00 0.00 0.00 4.30
549 554 2.452064 GCGGATCTGGGGAATGGGA 61.452 63.158 3.14 0.00 0.00 4.37
550 555 2.113986 GCGGATCTGGGGAATGGG 59.886 66.667 3.14 0.00 0.00 4.00
551 556 2.113986 GGCGGATCTGGGGAATGG 59.886 66.667 3.14 0.00 0.00 3.16
552 557 2.113986 GGGCGGATCTGGGGAATG 59.886 66.667 3.14 0.00 0.00 2.67
553 558 3.560251 CGGGCGGATCTGGGGAAT 61.560 66.667 3.14 0.00 0.00 3.01
568 573 4.856607 GAGACGAAGGAGGCGCGG 62.857 72.222 8.83 0.00 0.00 6.46
569 574 3.417275 ATGAGACGAAGGAGGCGCG 62.417 63.158 0.00 0.00 0.00 6.86
570 575 1.590259 GATGAGACGAAGGAGGCGC 60.590 63.158 0.00 0.00 0.00 6.53
571 576 0.030101 GAGATGAGACGAAGGAGGCG 59.970 60.000 0.00 0.00 0.00 5.52
572 577 0.387565 GGAGATGAGACGAAGGAGGC 59.612 60.000 0.00 0.00 0.00 4.70
573 578 1.036707 GGGAGATGAGACGAAGGAGG 58.963 60.000 0.00 0.00 0.00 4.30
574 579 1.953686 GAGGGAGATGAGACGAAGGAG 59.046 57.143 0.00 0.00 0.00 3.69
575 580 1.410365 GGAGGGAGATGAGACGAAGGA 60.410 57.143 0.00 0.00 0.00 3.36
576 581 1.036707 GGAGGGAGATGAGACGAAGG 58.963 60.000 0.00 0.00 0.00 3.46
577 582 1.036707 GGGAGGGAGATGAGACGAAG 58.963 60.000 0.00 0.00 0.00 3.79
578 583 0.752009 CGGGAGGGAGATGAGACGAA 60.752 60.000 0.00 0.00 0.00 3.85
579 584 1.152943 CGGGAGGGAGATGAGACGA 60.153 63.158 0.00 0.00 0.00 4.20
580 585 2.851071 GCGGGAGGGAGATGAGACG 61.851 68.421 0.00 0.00 0.00 4.18
581 586 3.133946 GCGGGAGGGAGATGAGAC 58.866 66.667 0.00 0.00 0.00 3.36
590 595 4.547367 GTGGGAATCGCGGGAGGG 62.547 72.222 6.13 0.00 45.26 4.30
591 596 4.547367 GGTGGGAATCGCGGGAGG 62.547 72.222 6.13 0.00 0.00 4.30
592 597 4.891727 CGGTGGGAATCGCGGGAG 62.892 72.222 6.13 0.00 0.00 4.30
1156 1406 1.834263 GATCTAGACAGGTGGTGGCTT 59.166 52.381 0.00 0.00 45.31 4.35
1168 1431 2.230266 GCGAGATTGGGGAGATCTAGAC 59.770 54.545 0.00 0.00 34.13 2.59
1171 1434 1.633774 GGCGAGATTGGGGAGATCTA 58.366 55.000 0.00 0.00 34.13 1.98
1198 1462 1.053264 AGCCGCCTCAAGATCTGGAT 61.053 55.000 0.00 0.00 0.00 3.41
1218 1482 2.047274 GTTGCGCTGCCTCACCTA 60.047 61.111 9.73 0.00 0.00 3.08
1334 1613 2.331132 GGTCGTCCTCGTCCTCGTT 61.331 63.158 0.00 0.00 40.85 3.85
1335 1614 2.745492 GGTCGTCCTCGTCCTCGT 60.745 66.667 0.00 0.00 40.85 4.18
1339 1618 2.675772 ACCAGGTCGTCCTCGTCC 60.676 66.667 0.00 0.00 43.07 4.79
1387 1666 4.514577 ATCTCCTTGACCGGCGCG 62.515 66.667 0.00 0.00 0.00 6.86
1475 1789 4.961511 GTGGTCGCCGCAGACACA 62.962 66.667 14.41 8.89 42.62 3.72
1477 1791 4.357947 GAGTGGTCGCCGCAGACA 62.358 66.667 14.41 0.00 42.62 3.41
1570 2017 0.338120 CCTCCCTCTCTCAGTTCCCT 59.662 60.000 0.00 0.00 0.00 4.20
1578 2025 2.123033 GGAGCCCCTCCCTCTCTC 60.123 72.222 0.00 0.00 44.36 3.20
1668 2115 4.043310 ACATGGAAAACTCCAGGATCTTCA 59.957 41.667 12.42 0.00 43.59 3.02
1711 2234 5.413833 CAGAATGGCTCAAACTAACAGACAT 59.586 40.000 0.00 0.00 37.50 3.06
1890 2604 3.068165 AGCTCAAACTGTAAAACAAGGGC 59.932 43.478 0.00 0.00 0.00 5.19
1899 2613 5.023533 AGAGTGTCAAGCTCAAACTGTAA 57.976 39.130 0.00 0.00 35.55 2.41
1935 2649 1.134128 ACAATGTGACTGCACTGTCCA 60.134 47.619 3.85 2.61 45.36 4.02
1938 2652 3.016031 TGAAACAATGTGACTGCACTGT 58.984 40.909 0.00 0.00 45.36 3.55
2016 2735 0.178995 TGACTGGCAGTGGCAATTCA 60.179 50.000 27.45 20.83 43.71 2.57
2023 2742 2.558378 CTATGATGTGACTGGCAGTGG 58.442 52.381 27.45 0.00 0.00 4.00
2035 2754 5.392995 AGAGTGCTAGTCATCCTATGATGT 58.607 41.667 7.73 0.00 46.96 3.06
2051 2822 5.052693 TCATTTTGGGCATATAGAGTGCT 57.947 39.130 0.00 0.00 42.16 4.40
2061 2832 2.038820 CAGTTGGGTTCATTTTGGGCAT 59.961 45.455 0.00 0.00 0.00 4.40
2097 2868 3.629398 CACTGAGGCAGAAAAGAAACACT 59.371 43.478 0.82 0.00 35.18 3.55
2126 2897 4.614555 CAAGTGTGCTGTCTACAAACAA 57.385 40.909 1.13 0.00 0.00 2.83
2229 3000 5.823045 ACAAGACCAAAAGAGAAATCGAGTT 59.177 36.000 0.00 0.00 0.00 3.01
2230 3001 5.368989 ACAAGACCAAAAGAGAAATCGAGT 58.631 37.500 0.00 0.00 0.00 4.18
2379 3168 3.632189 CAAGCTAGGTGAAACACAAAGC 58.368 45.455 15.02 15.02 41.06 3.51
2427 3598 5.645067 CAGCCATGTTCAGATAAACTTGAGA 59.355 40.000 0.00 0.00 36.77 3.27
2561 3791 5.128205 TCTACTACAGCTCGGTATTTGCTA 58.872 41.667 0.00 0.00 35.05 3.49
2582 3812 4.902448 AGTTCTCTAACTCCAGGTTGTTCT 59.098 41.667 4.30 0.00 42.42 3.01
2652 3882 3.876589 GAACTTCTGGTCGCCGCCA 62.877 63.158 0.61 0.61 36.97 5.69
2788 4018 2.925170 ACGGGGTGCTTGAGCTCT 60.925 61.111 16.19 0.00 42.66 4.09
2895 4126 4.569966 GGCACATGACAAAACAAACATTCA 59.430 37.500 0.00 0.00 0.00 2.57
2904 4135 6.648502 CATTTAAGTTGGCACATGACAAAAC 58.351 36.000 0.63 0.00 45.92 2.43
2945 4176 7.220300 CGCTTAACTCGACACTCATTATTAACT 59.780 37.037 0.00 0.00 0.00 2.24
2954 4185 0.596577 AGCGCTTAACTCGACACTCA 59.403 50.000 2.64 0.00 0.00 3.41
2968 4199 2.472695 TGTAATTGACAGGAAGCGCT 57.527 45.000 2.64 2.64 32.86 5.92
3514 4760 4.850386 AGTTTCTAGTAATGGGTCCCAAGT 59.150 41.667 16.55 8.78 36.95 3.16
3570 4816 4.093556 GGACTTCTTGGCTCAATAGTTTCG 59.906 45.833 0.00 0.00 0.00 3.46
3591 4844 6.827762 AGCCTTTTGAATTTTTGAAACATGGA 59.172 30.769 0.00 0.00 0.00 3.41
3639 4897 7.784633 TTTTCCTAAGAATTTTGTTTGGCTG 57.215 32.000 0.00 0.00 0.00 4.85
3798 5087 2.121963 AGCCTTCCCCAGACCACA 60.122 61.111 0.00 0.00 0.00 4.17
3811 5100 2.887151 ATTTTGGTCACTAGCAGCCT 57.113 45.000 0.00 0.00 33.93 4.58
3834 5123 1.259609 AGGTCGTTGGTTCCACGATA 58.740 50.000 15.19 0.00 38.19 2.92
3835 5124 0.395312 AAGGTCGTTGGTTCCACGAT 59.605 50.000 15.19 3.47 38.19 3.73
3895 5195 7.846644 AAAAACAAATGATCAAAAGCTGACA 57.153 28.000 0.00 0.00 36.69 3.58
3920 5220 1.454201 TGTGCGACCTTTTTGTGACA 58.546 45.000 0.00 0.00 0.00 3.58
3938 5240 4.387862 GCTGAAAGGTCATTGCTTTTCATG 59.612 41.667 14.10 11.06 41.40 3.07
3946 5248 0.169009 GGTCGCTGAAAGGTCATTGC 59.831 55.000 0.00 0.00 31.85 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.