Multiple sequence alignment - TraesCS7A01G411400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G411400 chr7A 100.000 3499 0 0 1 3499 602230584 602234082 0.000000e+00 6462.0
1 TraesCS7A01G411400 chr7A 97.000 100 3 0 3148 3247 602233689 602233788 6.010000e-38 169.0
2 TraesCS7A01G411400 chr7A 97.000 100 3 0 3106 3205 602233731 602233830 6.010000e-38 169.0
3 TraesCS7A01G411400 chr7A 96.552 58 2 0 3190 3247 602233689 602233746 2.870000e-16 97.1
4 TraesCS7A01G411400 chr7A 96.552 58 2 0 3106 3163 602233773 602233830 2.870000e-16 97.1
5 TraesCS7A01G411400 chr7D 90.802 2707 105 71 600 3206 521895690 521893028 0.000000e+00 3487.0
6 TraesCS7A01G411400 chr7D 77.778 468 84 18 1974 2428 198501867 198502327 1.600000e-68 270.0
7 TraesCS7A01G411400 chr7D 80.769 234 23 13 3271 3492 521893042 521892819 2.790000e-36 163.0
8 TraesCS7A01G411400 chr7B 91.982 2432 100 49 600 2984 555710198 555707815 0.000000e+00 3323.0
9 TraesCS7A01G411400 chr7B 81.544 298 22 15 1 293 555710728 555710459 7.610000e-52 215.0
10 TraesCS7A01G411400 chr7B 86.957 115 5 3 2988 3102 555707757 555707653 1.710000e-23 121.0
11 TraesCS7A01G411400 chr2D 97.320 485 13 0 1521 2005 80653611 80654095 0.000000e+00 824.0
12 TraesCS7A01G411400 chr6A 79.599 1147 197 25 1348 2480 71066744 71067867 0.000000e+00 787.0
13 TraesCS7A01G411400 chr6D 79.196 1144 207 23 1348 2480 56551986 56553109 0.000000e+00 765.0
14 TraesCS7A01G411400 chr6B 78.846 1144 211 23 1348 2480 127039793 127040916 0.000000e+00 743.0
15 TraesCS7A01G411400 chr6B 74.642 698 147 27 1589 2268 597557633 597556948 7.390000e-72 281.0
16 TraesCS7A01G411400 chr1D 94.309 492 15 2 1521 2012 344130545 344130067 0.000000e+00 741.0
17 TraesCS7A01G411400 chr3A 83.929 112 16 2 2122 2232 12440807 12440917 4.780000e-19 106.0
18 TraesCS7A01G411400 chr3A 78.916 166 26 9 2106 2268 12960953 12961112 1.720000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G411400 chr7A 602230584 602234082 3498 False 1398.840000 6462 97.420800 1 3499 5 chr7A.!!$F1 3498
1 TraesCS7A01G411400 chr7D 521892819 521895690 2871 True 1825.000000 3487 85.785500 600 3492 2 chr7D.!!$R1 2892
2 TraesCS7A01G411400 chr7B 555707653 555710728 3075 True 1219.666667 3323 86.827667 1 3102 3 chr7B.!!$R1 3101
3 TraesCS7A01G411400 chr6A 71066744 71067867 1123 False 787.000000 787 79.599000 1348 2480 1 chr6A.!!$F1 1132
4 TraesCS7A01G411400 chr6D 56551986 56553109 1123 False 765.000000 765 79.196000 1348 2480 1 chr6D.!!$F1 1132
5 TraesCS7A01G411400 chr6B 127039793 127040916 1123 False 743.000000 743 78.846000 1348 2480 1 chr6B.!!$F1 1132
6 TraesCS7A01G411400 chr6B 597556948 597557633 685 True 281.000000 281 74.642000 1589 2268 1 chr6B.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 466 0.109272 TGAGCTACAGTACAGCACGC 60.109 55.0 6.47 0.0 41.66 5.34 F
528 534 0.110238 GTGCCGTGTCGTAGTCGTAA 60.110 55.0 0.00 0.0 38.33 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1796 0.326264 GCCACCAGTCCTTGATGTCT 59.674 55.0 0.00 0.0 0.0 3.41 R
2506 2611 0.472471 AACCGAACTTGAAGCAGGGA 59.528 50.0 3.46 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.201615 CAGCGTTATATGTGAGTGAATGTGAT 59.798 38.462 0.00 0.00 0.00 3.06
52 53 6.422100 AGCGTTATATGTGAGTGAATGTGATC 59.578 38.462 0.00 0.00 0.00 2.92
53 54 6.346919 GCGTTATATGTGAGTGAATGTGATCC 60.347 42.308 0.00 0.00 0.00 3.36
78 79 4.703645 TGATCACTCGAGACTTAACTGG 57.296 45.455 21.68 0.00 0.00 4.00
84 85 1.275291 TCGAGACTTAACTGGCCAAGG 59.725 52.381 7.01 0.00 0.00 3.61
100 101 1.472480 CAAGGAAAATGATTCCGGCGT 59.528 47.619 6.01 0.00 43.23 5.68
150 151 0.537828 GTTGGGTAGGTTCCGGCAAA 60.538 55.000 0.00 0.00 0.00 3.68
274 280 2.404789 CGCCACGCCAGCATTTAG 59.595 61.111 0.00 0.00 0.00 1.85
293 299 1.303091 GCATTTAGTTGGGCGGACGT 61.303 55.000 0.00 0.00 0.00 4.34
294 300 2.008045 GCATTTAGTTGGGCGGACGTA 61.008 52.381 0.00 0.00 0.00 3.57
295 301 1.931172 CATTTAGTTGGGCGGACGTAG 59.069 52.381 0.00 0.00 0.00 3.51
311 317 3.740590 ACGTAGTATGTCTGAAACGACG 58.259 45.455 15.07 15.07 44.38 5.12
312 318 3.096461 CGTAGTATGTCTGAAACGACGG 58.904 50.000 0.00 0.00 38.19 4.79
313 319 1.992170 AGTATGTCTGAAACGACGGC 58.008 50.000 0.00 0.00 36.71 5.68
314 320 0.638746 GTATGTCTGAAACGACGGCG 59.361 55.000 10.39 10.39 44.79 6.46
328 334 3.818387 CGACGGCGTATGTATGATTACT 58.182 45.455 14.74 0.00 0.00 2.24
329 335 3.602489 CGACGGCGTATGTATGATTACTG 59.398 47.826 14.74 0.00 0.00 2.74
330 336 4.612033 CGACGGCGTATGTATGATTACTGA 60.612 45.833 14.74 0.00 0.00 3.41
331 337 5.386958 ACGGCGTATGTATGATTACTGAT 57.613 39.130 12.58 0.00 0.00 2.90
332 338 5.779922 ACGGCGTATGTATGATTACTGATT 58.220 37.500 12.58 0.00 0.00 2.57
333 339 6.916440 ACGGCGTATGTATGATTACTGATTA 58.084 36.000 12.58 0.00 0.00 1.75
334 340 7.027760 ACGGCGTATGTATGATTACTGATTAG 58.972 38.462 12.58 0.00 0.00 1.73
335 341 6.020599 CGGCGTATGTATGATTACTGATTAGC 60.021 42.308 0.00 0.00 0.00 3.09
336 342 6.255887 GGCGTATGTATGATTACTGATTAGCC 59.744 42.308 0.00 0.00 0.00 3.93
337 343 6.811665 GCGTATGTATGATTACTGATTAGCCA 59.188 38.462 0.00 0.00 0.00 4.75
338 344 7.009631 GCGTATGTATGATTACTGATTAGCCAG 59.990 40.741 0.00 0.00 39.93 4.85
339 345 7.009631 CGTATGTATGATTACTGATTAGCCAGC 59.990 40.741 0.00 0.00 37.68 4.85
340 346 6.425210 TGTATGATTACTGATTAGCCAGCT 57.575 37.500 0.00 0.00 37.68 4.24
341 347 6.459066 TGTATGATTACTGATTAGCCAGCTC 58.541 40.000 0.00 0.00 37.68 4.09
342 348 3.982475 TGATTACTGATTAGCCAGCTCG 58.018 45.455 0.00 0.00 37.68 5.03
343 349 2.225068 TTACTGATTAGCCAGCTCGC 57.775 50.000 0.00 0.00 37.68 5.03
345 351 1.953138 CTGATTAGCCAGCTCGCCG 60.953 63.158 0.00 0.00 0.00 6.46
347 353 3.447025 GATTAGCCAGCTCGCCGGT 62.447 63.158 1.90 0.00 0.00 5.28
348 354 2.925162 GATTAGCCAGCTCGCCGGTT 62.925 60.000 1.90 0.00 0.00 4.44
349 355 2.925162 ATTAGCCAGCTCGCCGGTTC 62.925 60.000 1.90 0.00 0.00 3.62
425 431 4.287967 ACGCGCGTGAACGTTTGG 62.288 61.111 37.37 0.93 40.09 3.28
429 435 3.944233 GCGTGAACGTTTGGCCGT 61.944 61.111 0.46 0.00 44.23 5.68
430 436 2.247267 CGTGAACGTTTGGCCGTC 59.753 61.111 0.46 0.00 40.85 4.79
431 437 2.247267 GTGAACGTTTGGCCGTCG 59.753 61.111 0.46 11.43 40.85 5.12
432 438 2.202905 TGAACGTTTGGCCGTCGT 60.203 55.556 0.46 12.60 40.85 4.34
433 439 2.247267 GAACGTTTGGCCGTCGTG 59.753 61.111 17.60 0.82 40.85 4.35
434 440 3.850092 GAACGTTTGGCCGTCGTGC 62.850 63.158 17.60 13.31 40.85 5.34
435 441 4.903010 ACGTTTGGCCGTCGTGCT 62.903 61.111 16.50 0.00 35.95 4.40
436 442 4.072088 CGTTTGGCCGTCGTGCTC 62.072 66.667 0.00 0.00 0.00 4.26
437 443 3.723348 GTTTGGCCGTCGTGCTCC 61.723 66.667 0.00 0.00 0.00 4.70
438 444 3.936203 TTTGGCCGTCGTGCTCCT 61.936 61.111 0.00 0.00 0.00 3.69
439 445 3.876589 TTTGGCCGTCGTGCTCCTC 62.877 63.158 0.00 0.00 0.00 3.71
442 448 4.803426 GCCGTCGTGCTCCTCCTG 62.803 72.222 0.00 0.00 0.00 3.86
443 449 3.062466 CCGTCGTGCTCCTCCTGA 61.062 66.667 0.00 0.00 0.00 3.86
444 450 2.487428 CGTCGTGCTCCTCCTGAG 59.513 66.667 0.00 0.00 44.47 3.35
454 460 3.006112 CTCCTCCTGAGCTACAGTACA 57.994 52.381 10.86 0.00 44.40 2.90
455 461 2.948979 CTCCTCCTGAGCTACAGTACAG 59.051 54.545 10.86 2.42 44.40 2.74
456 462 1.407258 CCTCCTGAGCTACAGTACAGC 59.593 57.143 10.86 0.00 44.40 4.40
457 463 2.095461 CTCCTGAGCTACAGTACAGCA 58.905 52.381 6.47 0.00 44.40 4.41
458 464 1.819288 TCCTGAGCTACAGTACAGCAC 59.181 52.381 6.47 1.01 44.40 4.40
459 465 1.468224 CCTGAGCTACAGTACAGCACG 60.468 57.143 6.47 0.00 44.40 5.34
460 466 0.109272 TGAGCTACAGTACAGCACGC 60.109 55.000 6.47 0.00 41.66 5.34
461 467 0.802607 GAGCTACAGTACAGCACGCC 60.803 60.000 6.47 0.00 41.66 5.68
462 468 1.810030 GCTACAGTACAGCACGCCC 60.810 63.158 0.00 0.00 38.93 6.13
463 469 1.516386 CTACAGTACAGCACGCCCG 60.516 63.158 0.00 0.00 0.00 6.13
464 470 2.884087 CTACAGTACAGCACGCCCGG 62.884 65.000 0.00 0.00 0.00 5.73
475 481 4.840005 CGCCCGGCCCTTCTCTTC 62.840 72.222 3.10 0.00 0.00 2.87
478 484 2.592993 CCCGGCCCTTCTCTTCACA 61.593 63.158 0.00 0.00 0.00 3.58
479 485 1.376037 CCGGCCCTTCTCTTCACAC 60.376 63.158 0.00 0.00 0.00 3.82
482 488 1.671742 GCCCTTCTCTTCACACCGA 59.328 57.895 0.00 0.00 0.00 4.69
485 491 1.337260 CCCTTCTCTTCACACCGACAG 60.337 57.143 0.00 0.00 0.00 3.51
490 496 0.531974 TCTTCACACCGACAGTTGCC 60.532 55.000 0.00 0.00 0.00 4.52
491 497 1.831389 CTTCACACCGACAGTTGCCG 61.831 60.000 0.00 0.00 0.00 5.69
492 498 2.581208 TTCACACCGACAGTTGCCGT 62.581 55.000 0.00 0.00 0.00 5.68
493 499 2.279918 ACACCGACAGTTGCCGTC 60.280 61.111 0.00 0.00 0.00 4.79
494 500 2.029073 CACCGACAGTTGCCGTCT 59.971 61.111 0.00 0.00 0.00 4.18
506 512 2.959357 GCCGTCTGCAAGTGACAGC 61.959 63.158 5.54 1.78 40.77 4.40
507 513 1.595109 CCGTCTGCAAGTGACAGCA 60.595 57.895 5.54 2.89 39.25 4.41
510 516 1.233019 GTCTGCAAGTGACAGCATGT 58.767 50.000 3.30 0.00 45.96 3.21
511 517 1.069432 GTCTGCAAGTGACAGCATGTG 60.069 52.381 3.30 0.00 43.69 3.21
512 518 2.743447 TCTGCAAGTGACAGCATGTGC 61.743 52.381 3.30 0.00 43.69 4.57
520 526 3.043713 CAGCATGTGCCGTGTCGT 61.044 61.111 0.57 0.00 43.38 4.34
522 528 1.446099 AGCATGTGCCGTGTCGTAG 60.446 57.895 0.57 0.00 43.38 3.51
524 530 1.683790 GCATGTGCCGTGTCGTAGTC 61.684 60.000 0.00 0.00 34.31 2.59
525 531 1.154093 ATGTGCCGTGTCGTAGTCG 60.154 57.895 0.00 0.00 38.55 4.18
526 532 1.859427 ATGTGCCGTGTCGTAGTCGT 61.859 55.000 0.00 0.00 38.33 4.34
527 533 1.227342 TGTGCCGTGTCGTAGTCGTA 61.227 55.000 0.00 0.00 38.33 3.43
528 534 0.110238 GTGCCGTGTCGTAGTCGTAA 60.110 55.000 0.00 0.00 38.33 3.18
529 535 0.166597 TGCCGTGTCGTAGTCGTAAG 59.833 55.000 0.00 0.00 38.33 2.34
546 552 6.392625 TCGTAAGATAAGGAGGAAGATGTG 57.607 41.667 0.00 0.00 45.01 3.21
547 553 5.892119 TCGTAAGATAAGGAGGAAGATGTGT 59.108 40.000 0.00 0.00 45.01 3.72
548 554 5.980116 CGTAAGATAAGGAGGAAGATGTGTG 59.020 44.000 0.00 0.00 43.02 3.82
549 555 6.405953 CGTAAGATAAGGAGGAAGATGTGTGT 60.406 42.308 0.00 0.00 43.02 3.72
550 556 6.380079 AAGATAAGGAGGAAGATGTGTGTT 57.620 37.500 0.00 0.00 0.00 3.32
551 557 6.380079 AGATAAGGAGGAAGATGTGTGTTT 57.620 37.500 0.00 0.00 0.00 2.83
570 576 2.125512 AGACATCAACGCGGCCTC 60.126 61.111 12.47 0.00 0.00 4.70
588 594 3.426568 GGAAGCTGCCGTGCTGTC 61.427 66.667 0.00 0.00 43.24 3.51
591 597 3.890936 AAGCTGCCGTGCTGTCTCC 62.891 63.158 0.00 0.00 43.24 3.71
597 603 4.717629 CGTGCTGTCTCCGGCGAA 62.718 66.667 9.30 0.00 46.53 4.70
598 604 2.357034 GTGCTGTCTCCGGCGAAA 60.357 61.111 9.30 0.00 46.53 3.46
703 761 2.347114 CGGTGGTCCAGCATCACA 59.653 61.111 20.69 0.00 33.45 3.58
705 763 1.377725 GGTGGTCCAGCATCACAGG 60.378 63.158 16.35 0.00 33.45 4.00
706 764 1.679311 GTGGTCCAGCATCACAGGA 59.321 57.895 0.00 0.00 0.00 3.86
707 765 0.392193 GTGGTCCAGCATCACAGGAG 60.392 60.000 0.00 0.00 34.02 3.69
708 766 1.451028 GGTCCAGCATCACAGGAGC 60.451 63.158 0.00 0.00 44.00 4.70
709 767 1.601171 GTCCAGCATCACAGGAGCT 59.399 57.895 0.00 0.00 34.02 4.09
710 768 0.826715 GTCCAGCATCACAGGAGCTA 59.173 55.000 0.00 0.00 34.02 3.32
711 769 1.117994 TCCAGCATCACAGGAGCTAG 58.882 55.000 0.00 0.00 36.73 3.42
712 770 0.829333 CCAGCATCACAGGAGCTAGT 59.171 55.000 0.00 0.00 36.73 2.57
713 771 2.034878 CCAGCATCACAGGAGCTAGTA 58.965 52.381 0.00 0.00 36.73 1.82
714 772 2.035704 CCAGCATCACAGGAGCTAGTAG 59.964 54.545 0.00 0.00 36.73 2.57
715 773 1.686052 AGCATCACAGGAGCTAGTAGC 59.314 52.381 14.62 14.62 42.84 3.58
716 774 1.270041 GCATCACAGGAGCTAGTAGCC 60.270 57.143 18.65 9.96 43.77 3.93
717 775 1.000827 CATCACAGGAGCTAGTAGCCG 60.001 57.143 18.65 7.62 43.77 5.52
718 776 1.066587 CACAGGAGCTAGTAGCCGC 59.933 63.158 18.65 10.93 43.77 6.53
719 777 1.076632 ACAGGAGCTAGTAGCCGCT 60.077 57.895 18.65 0.00 43.77 5.52
720 778 1.361993 CAGGAGCTAGTAGCCGCTG 59.638 63.158 18.65 13.81 43.77 5.18
721 779 2.028337 GGAGCTAGTAGCCGCTGC 59.972 66.667 18.65 0.64 43.77 5.25
722 780 2.028337 GAGCTAGTAGCCGCTGCC 59.972 66.667 18.65 0.00 43.77 4.85
767 830 1.390926 GGGTCCCTCAGGTCAGGTA 59.609 63.158 0.00 0.00 0.00 3.08
823 894 2.600470 GCCCACCAACCAACCTCC 60.600 66.667 0.00 0.00 0.00 4.30
825 896 2.282180 CCACCAACCAACCTCCGG 60.282 66.667 0.00 0.00 0.00 5.14
829 900 3.966543 CAACCAACCTCCGGGCCT 61.967 66.667 0.84 0.00 35.63 5.19
889 960 2.718563 ACCACGCCTTTAATACCCTTG 58.281 47.619 0.00 0.00 0.00 3.61
986 1065 1.990060 ATCTCCACCTCCACCACCG 60.990 63.158 0.00 0.00 0.00 4.94
987 1066 3.706373 CTCCACCTCCACCACCGG 61.706 72.222 0.00 0.00 0.00 5.28
1149 1230 3.878667 CTCCCCATTCCCCGCTCC 61.879 72.222 0.00 0.00 0.00 4.70
1179 1260 4.565850 GCCGATCCCTCCCTCCCT 62.566 72.222 0.00 0.00 0.00 4.20
1180 1261 2.203714 CCGATCCCTCCCTCCCTC 60.204 72.222 0.00 0.00 0.00 4.30
1216 1303 2.602456 GCTGATGCTGATTTGCTCGATG 60.602 50.000 0.00 0.00 36.03 3.84
2352 2451 2.369394 CCAAGGACCATTTCTACCTGC 58.631 52.381 0.00 0.00 32.73 4.85
2506 2611 0.823769 TCCTCGCACTGACACTGAGT 60.824 55.000 0.00 0.00 0.00 3.41
2522 2633 1.270305 TGAGTCCCTGCTTCAAGTTCG 60.270 52.381 0.00 0.00 0.00 3.95
2544 2655 4.068599 GGTTTCTCCATGCTAGATTAGGC 58.931 47.826 0.00 0.00 35.97 3.93
2546 2657 3.266477 TCTCCATGCTAGATTAGGCCT 57.734 47.619 11.78 11.78 0.00 5.19
2561 2692 1.203364 AGGCCTTCTTCTTCCTCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
2562 2693 1.843206 GGCCTTCTTCTTCCTCCTCAT 59.157 52.381 0.00 0.00 0.00 2.90
2563 2694 2.158827 GGCCTTCTTCTTCCTCCTCATC 60.159 54.545 0.00 0.00 0.00 2.92
2573 2706 1.780309 TCCTCCTCATCCTCTCTCTCC 59.220 57.143 0.00 0.00 0.00 3.71
2577 2710 1.203050 CCTCATCCTCTCTCTCCCTCC 60.203 61.905 0.00 0.00 0.00 4.30
2610 2743 6.034898 GGTTCACTTCTTGATTTGTTGTTGTG 59.965 38.462 0.00 0.00 32.84 3.33
2632 2768 3.259123 GGTGGTGCCAAAGATTCATTTCT 59.741 43.478 0.00 0.00 37.17 2.52
2639 2775 7.095481 GGTGCCAAAGATTCATTTCTTTCTTTC 60.095 37.037 0.00 0.00 42.58 2.62
2640 2776 7.654923 GTGCCAAAGATTCATTTCTTTCTTTCT 59.345 33.333 0.00 0.00 42.58 2.52
2682 2821 2.599677 AGGAGGAGACGAACAAGTTCT 58.400 47.619 10.83 0.00 37.44 3.01
2688 2827 3.245519 GGAGACGAACAAGTTCTTGTCAC 59.754 47.826 16.82 13.08 34.33 3.67
2698 2837 1.394917 GTTCTTGTCACGCATAGGCAG 59.605 52.381 0.00 0.00 41.24 4.85
2706 2845 0.606401 ACGCATAGGCAGCAAAGTGT 60.606 50.000 0.00 0.00 41.24 3.55
2749 2889 5.293324 TCTGTAAATTCGATTGATTGTCCCG 59.707 40.000 0.00 0.00 0.00 5.14
2750 2890 5.179533 TGTAAATTCGATTGATTGTCCCGA 58.820 37.500 0.00 0.00 0.00 5.14
2819 2970 3.998913 TGATCCATCACTTTGCTACCA 57.001 42.857 0.00 0.00 0.00 3.25
2821 2972 4.454678 TGATCCATCACTTTGCTACCATC 58.545 43.478 0.00 0.00 0.00 3.51
2822 2973 3.998913 TCCATCACTTTGCTACCATCA 57.001 42.857 0.00 0.00 0.00 3.07
2823 2974 3.877559 TCCATCACTTTGCTACCATCAG 58.122 45.455 0.00 0.00 0.00 2.90
2825 2976 3.875727 CCATCACTTTGCTACCATCAGAG 59.124 47.826 0.00 0.00 0.00 3.35
2868 3023 1.881973 TGAGTGTGATGCTTTTCTGGC 59.118 47.619 0.00 0.00 0.00 4.85
2883 3038 4.362476 GGCCCCAAACTTGCTGCG 62.362 66.667 0.00 0.00 0.00 5.18
2911 3066 0.329596 GCCCCCTCATTCTCAACAGT 59.670 55.000 0.00 0.00 0.00 3.55
2912 3067 1.272147 GCCCCCTCATTCTCAACAGTT 60.272 52.381 0.00 0.00 0.00 3.16
2914 3069 2.040278 CCCCCTCATTCTCAACAGTTCA 59.960 50.000 0.00 0.00 0.00 3.18
2915 3070 3.308688 CCCCCTCATTCTCAACAGTTCAT 60.309 47.826 0.00 0.00 0.00 2.57
2916 3071 3.944015 CCCCTCATTCTCAACAGTTCATC 59.056 47.826 0.00 0.00 0.00 2.92
2917 3072 4.566278 CCCCTCATTCTCAACAGTTCATCA 60.566 45.833 0.00 0.00 0.00 3.07
2918 3073 4.634883 CCCTCATTCTCAACAGTTCATCAG 59.365 45.833 0.00 0.00 0.00 2.90
2919 3074 5.485620 CCTCATTCTCAACAGTTCATCAGA 58.514 41.667 0.00 0.00 0.00 3.27
2922 3077 6.470278 TCATTCTCAACAGTTCATCAGACAT 58.530 36.000 0.00 0.00 0.00 3.06
2944 3107 3.863142 ATGCTTTCAATTCTGACCAGC 57.137 42.857 0.00 0.00 38.11 4.85
2957 3120 2.510238 CCAGCTTCGGAGGCTTCG 60.510 66.667 12.36 9.46 38.03 3.79
2964 3128 1.461127 CTTCGGAGGCTTCGACTTTTG 59.539 52.381 19.36 2.28 36.30 2.44
2966 3130 1.614903 TCGGAGGCTTCGACTTTTGTA 59.385 47.619 15.25 0.00 0.00 2.41
2967 3131 2.232941 TCGGAGGCTTCGACTTTTGTAT 59.767 45.455 15.25 0.00 0.00 2.29
2968 3132 3.444742 TCGGAGGCTTCGACTTTTGTATA 59.555 43.478 15.25 0.00 0.00 1.47
2970 3134 4.439700 CGGAGGCTTCGACTTTTGTATAGA 60.440 45.833 10.37 0.00 0.00 1.98
2996 3214 2.612221 GGACCAGTTTCGTTGGAGTAGG 60.612 54.545 0.00 0.00 39.08 3.18
3085 3306 6.601217 AGGTTATCTGAAGAATGAAAAGGCTC 59.399 38.462 0.00 0.00 0.00 4.70
3102 3323 1.129437 GCTCTCGCAACATTTCAGACC 59.871 52.381 0.00 0.00 35.78 3.85
3103 3324 2.416747 CTCTCGCAACATTTCAGACCA 58.583 47.619 0.00 0.00 0.00 4.02
3127 3384 5.862811 GCTTCAGCTCTGTATTTTGTACTG 58.137 41.667 0.00 0.00 38.21 2.74
3128 3385 5.409826 GCTTCAGCTCTGTATTTTGTACTGT 59.590 40.000 0.00 0.00 38.21 3.55
3129 3386 6.590292 GCTTCAGCTCTGTATTTTGTACTGTA 59.410 38.462 0.00 0.00 38.21 2.74
3130 3387 7.412020 GCTTCAGCTCTGTATTTTGTACTGTAC 60.412 40.741 10.98 10.98 38.21 2.90
3131 3388 6.988522 TCAGCTCTGTATTTTGTACTGTACA 58.011 36.000 16.26 16.26 36.79 2.90
3132 3389 7.611770 TCAGCTCTGTATTTTGTACTGTACAT 58.388 34.615 20.31 9.29 38.68 2.29
3134 3391 8.808529 CAGCTCTGTATTTTGTACTGTACATAC 58.191 37.037 20.31 18.52 38.68 2.39
3136 3393 7.762615 GCTCTGTATTTTGTACTGTACATACCA 59.237 37.037 20.31 11.95 38.68 3.25
3137 3394 9.302345 CTCTGTATTTTGTACTGTACATACCAG 57.698 37.037 20.31 18.77 38.68 4.00
3138 3395 7.762615 TCTGTATTTTGTACTGTACATACCAGC 59.237 37.037 20.31 10.50 38.68 4.85
3139 3396 7.617225 TGTATTTTGTACTGTACATACCAGCT 58.383 34.615 20.31 5.51 38.68 4.24
3140 3397 8.098286 TGTATTTTGTACTGTACATACCAGCTT 58.902 33.333 20.31 4.34 38.68 3.74
3141 3398 9.590451 GTATTTTGTACTGTACATACCAGCTTA 57.410 33.333 20.31 0.64 38.68 3.09
3142 3399 8.718102 ATTTTGTACTGTACATACCAGCTTAG 57.282 34.615 20.31 0.00 38.68 2.18
3143 3400 5.847111 TGTACTGTACATACCAGCTTAGG 57.153 43.478 16.26 0.00 32.89 2.69
3144 3401 4.647853 TGTACTGTACATACCAGCTTAGGG 59.352 45.833 16.26 0.00 32.89 3.53
3145 3402 3.039011 ACTGTACATACCAGCTTAGGGG 58.961 50.000 0.00 0.00 0.00 4.79
3146 3403 1.766496 TGTACATACCAGCTTAGGGGC 59.234 52.381 0.00 0.00 0.00 5.80
3147 3404 1.071857 GTACATACCAGCTTAGGGGCC 59.928 57.143 0.00 0.00 0.00 5.80
3148 3405 0.327576 ACATACCAGCTTAGGGGCCT 60.328 55.000 0.84 0.00 0.00 5.19
3149 3406 0.846693 CATACCAGCTTAGGGGCCTT 59.153 55.000 0.84 0.00 0.00 4.35
3150 3407 1.141185 ATACCAGCTTAGGGGCCTTC 58.859 55.000 0.84 0.00 0.00 3.46
3151 3408 0.252974 TACCAGCTTAGGGGCCTTCA 60.253 55.000 0.84 0.00 0.00 3.02
3152 3409 1.225704 CCAGCTTAGGGGCCTTCAG 59.774 63.158 0.84 0.00 0.00 3.02
3153 3410 1.452833 CAGCTTAGGGGCCTTCAGC 60.453 63.158 13.52 13.52 42.60 4.26
3154 3411 1.617839 AGCTTAGGGGCCTTCAGCT 60.618 57.895 17.76 17.76 43.05 4.24
3155 3412 1.153066 GCTTAGGGGCCTTCAGCTC 60.153 63.158 14.05 0.00 43.55 4.09
3156 3413 1.631071 GCTTAGGGGCCTTCAGCTCT 61.631 60.000 14.05 0.00 43.87 4.09
3157 3414 0.179936 CTTAGGGGCCTTCAGCTCTG 59.820 60.000 0.84 0.00 43.87 3.35
3158 3415 0.547712 TTAGGGGCCTTCAGCTCTGT 60.548 55.000 0.84 0.00 43.87 3.41
3159 3416 0.338467 TAGGGGCCTTCAGCTCTGTA 59.662 55.000 0.84 0.00 43.87 2.74
3160 3417 0.327000 AGGGGCCTTCAGCTCTGTAT 60.327 55.000 0.84 0.00 43.87 2.29
3161 3418 0.548510 GGGGCCTTCAGCTCTGTATT 59.451 55.000 0.84 0.00 43.87 1.89
3162 3419 1.064389 GGGGCCTTCAGCTCTGTATTT 60.064 52.381 0.84 0.00 43.87 1.40
3163 3420 2.621668 GGGGCCTTCAGCTCTGTATTTT 60.622 50.000 0.84 0.00 43.87 1.82
3164 3421 2.424956 GGGCCTTCAGCTCTGTATTTTG 59.575 50.000 0.84 0.00 39.74 2.44
3165 3422 3.084786 GGCCTTCAGCTCTGTATTTTGT 58.915 45.455 0.00 0.00 43.05 2.83
3166 3423 4.261801 GGCCTTCAGCTCTGTATTTTGTA 58.738 43.478 0.00 0.00 43.05 2.41
3167 3424 4.095036 GGCCTTCAGCTCTGTATTTTGTAC 59.905 45.833 0.00 0.00 43.05 2.90
3168 3425 4.695455 GCCTTCAGCTCTGTATTTTGTACA 59.305 41.667 0.00 0.00 38.99 2.90
3169 3426 5.163814 GCCTTCAGCTCTGTATTTTGTACAG 60.164 44.000 8.53 8.53 44.56 2.74
3170 3427 5.934625 CCTTCAGCTCTGTATTTTGTACAGT 59.065 40.000 13.18 0.00 43.84 3.55
3171 3428 7.097192 CCTTCAGCTCTGTATTTTGTACAGTA 58.903 38.462 13.18 0.00 43.84 2.74
3172 3429 7.063544 CCTTCAGCTCTGTATTTTGTACAGTAC 59.936 40.741 13.18 3.49 43.84 2.73
3173 3430 6.988522 TCAGCTCTGTATTTTGTACAGTACA 58.011 36.000 9.51 9.51 43.84 2.90
3174 3431 7.611770 TCAGCTCTGTATTTTGTACAGTACAT 58.388 34.615 14.34 2.52 43.84 2.29
3175 3432 8.745590 TCAGCTCTGTATTTTGTACAGTACATA 58.254 33.333 14.34 7.00 43.84 2.29
3176 3433 8.808529 CAGCTCTGTATTTTGTACAGTACATAC 58.191 37.037 14.34 13.56 43.84 2.39
3177 3434 7.980099 AGCTCTGTATTTTGTACAGTACATACC 59.020 37.037 14.34 2.57 43.84 2.73
3178 3435 7.762615 GCTCTGTATTTTGTACAGTACATACCA 59.237 37.037 14.34 6.58 43.84 3.25
3179 3436 9.302345 CTCTGTATTTTGTACAGTACATACCAG 57.698 37.037 14.34 14.34 43.84 4.00
3180 3437 7.762615 TCTGTATTTTGTACAGTACATACCAGC 59.237 37.037 14.34 4.87 43.84 4.85
3181 3438 7.617225 TGTATTTTGTACAGTACATACCAGCT 58.383 34.615 14.34 0.00 38.68 4.24
3182 3439 8.098286 TGTATTTTGTACAGTACATACCAGCTT 58.902 33.333 14.34 0.00 38.68 3.74
3183 3440 9.590451 GTATTTTGTACAGTACATACCAGCTTA 57.410 33.333 14.34 0.00 38.68 3.09
3184 3441 8.718102 ATTTTGTACAGTACATACCAGCTTAG 57.282 34.615 14.34 0.00 38.68 2.18
3185 3442 5.847111 TGTACAGTACATACCAGCTTAGG 57.153 43.478 9.51 0.00 32.89 2.69
3186 3443 4.647853 TGTACAGTACATACCAGCTTAGGG 59.352 45.833 9.51 0.00 32.89 3.53
3187 3444 3.039011 ACAGTACATACCAGCTTAGGGG 58.961 50.000 0.00 0.00 0.00 4.79
3188 3445 2.047830 AGTACATACCAGCTTAGGGGC 58.952 52.381 0.00 0.00 0.00 5.80
3189 3446 1.071857 GTACATACCAGCTTAGGGGCC 59.928 57.143 0.00 0.00 0.00 5.80
3190 3447 0.327576 ACATACCAGCTTAGGGGCCT 60.328 55.000 0.84 0.00 0.00 5.19
3191 3448 0.846693 CATACCAGCTTAGGGGCCTT 59.153 55.000 0.84 0.00 0.00 4.35
3192 3449 1.141185 ATACCAGCTTAGGGGCCTTC 58.859 55.000 0.84 0.00 0.00 3.46
3193 3450 0.252974 TACCAGCTTAGGGGCCTTCA 60.253 55.000 0.84 0.00 0.00 3.02
3194 3451 1.225704 CCAGCTTAGGGGCCTTCAG 59.774 63.158 0.84 0.00 0.00 3.02
3195 3452 1.452833 CAGCTTAGGGGCCTTCAGC 60.453 63.158 13.52 13.52 42.60 4.26
3196 3453 1.617839 AGCTTAGGGGCCTTCAGCT 60.618 57.895 17.76 17.76 43.05 4.24
3197 3454 1.153066 GCTTAGGGGCCTTCAGCTC 60.153 63.158 14.05 0.00 43.55 4.09
3198 3455 1.631071 GCTTAGGGGCCTTCAGCTCT 61.631 60.000 14.05 0.00 43.87 4.09
3199 3456 0.179936 CTTAGGGGCCTTCAGCTCTG 59.820 60.000 0.84 0.00 43.87 3.35
3200 3457 0.547712 TTAGGGGCCTTCAGCTCTGT 60.548 55.000 0.84 0.00 43.87 3.41
3201 3458 0.338467 TAGGGGCCTTCAGCTCTGTA 59.662 55.000 0.84 0.00 43.87 2.74
3202 3459 0.327000 AGGGGCCTTCAGCTCTGTAT 60.327 55.000 0.84 0.00 43.87 2.29
3203 3460 0.548510 GGGGCCTTCAGCTCTGTATT 59.451 55.000 0.84 0.00 43.87 1.89
3204 3461 1.064389 GGGGCCTTCAGCTCTGTATTT 60.064 52.381 0.84 0.00 43.87 1.40
3205 3462 2.621668 GGGGCCTTCAGCTCTGTATTTT 60.622 50.000 0.84 0.00 43.87 1.82
3206 3463 2.424956 GGGCCTTCAGCTCTGTATTTTG 59.575 50.000 0.84 0.00 39.74 2.44
3207 3464 3.084786 GGCCTTCAGCTCTGTATTTTGT 58.915 45.455 0.00 0.00 43.05 2.83
3208 3465 4.261801 GGCCTTCAGCTCTGTATTTTGTA 58.738 43.478 0.00 0.00 43.05 2.41
3209 3466 4.095036 GGCCTTCAGCTCTGTATTTTGTAC 59.905 45.833 0.00 0.00 43.05 2.90
3210 3467 4.095036 GCCTTCAGCTCTGTATTTTGTACC 59.905 45.833 0.00 0.00 38.99 3.34
3211 3468 4.330074 CCTTCAGCTCTGTATTTTGTACCG 59.670 45.833 0.00 0.00 0.00 4.02
3212 3469 4.530710 TCAGCTCTGTATTTTGTACCGT 57.469 40.909 0.00 0.00 0.00 4.83
3213 3470 5.648178 TCAGCTCTGTATTTTGTACCGTA 57.352 39.130 0.00 0.00 0.00 4.02
3214 3471 5.404946 TCAGCTCTGTATTTTGTACCGTAC 58.595 41.667 1.40 1.40 0.00 3.67
3215 3472 5.047872 TCAGCTCTGTATTTTGTACCGTACA 60.048 40.000 7.32 7.32 36.79 2.90
3216 3473 5.810587 CAGCTCTGTATTTTGTACCGTACAT 59.189 40.000 12.14 0.70 38.68 2.29
3217 3474 6.976349 CAGCTCTGTATTTTGTACCGTACATA 59.024 38.462 12.14 5.04 38.68 2.29
3218 3475 6.976925 AGCTCTGTATTTTGTACCGTACATAC 59.023 38.462 12.14 11.80 38.68 2.39
3219 3476 6.199719 GCTCTGTATTTTGTACCGTACATACC 59.800 42.308 12.14 0.99 38.68 2.73
3220 3477 7.167924 TCTGTATTTTGTACCGTACATACCA 57.832 36.000 12.14 4.99 38.68 3.25
3221 3478 7.259882 TCTGTATTTTGTACCGTACATACCAG 58.740 38.462 12.14 12.73 38.68 4.00
3222 3479 5.811613 TGTATTTTGTACCGTACATACCAGC 59.188 40.000 12.14 3.28 38.68 4.85
3233 3490 0.846693 CATACCAGCTTAGGGGCCTT 59.153 55.000 0.84 0.00 0.00 4.35
3247 3506 3.073650 AGGGGCCTTCAGCTCTATATTTG 59.926 47.826 0.84 0.00 43.87 2.32
3251 3510 5.455326 GGGCCTTCAGCTCTATATTTGAGAA 60.455 44.000 0.84 0.00 39.74 2.87
3253 3512 6.543831 GGCCTTCAGCTCTATATTTGAGAAAA 59.456 38.462 0.00 0.00 43.05 2.29
3269 3528 4.754618 TGAGAAAAGTTCAATTAGCAGCGA 59.245 37.500 0.00 0.00 0.00 4.93
3288 3547 5.718649 GCGACAGCTTTATATTTCAGACA 57.281 39.130 0.00 0.00 41.01 3.41
3290 3549 6.188175 GCGACAGCTTTATATTTCAGACAAG 58.812 40.000 0.00 0.00 41.01 3.16
3291 3550 6.188175 CGACAGCTTTATATTTCAGACAAGC 58.812 40.000 0.00 0.00 37.50 4.01
3292 3551 6.036517 CGACAGCTTTATATTTCAGACAAGCT 59.963 38.462 0.00 0.00 46.14 3.74
3303 3562 3.347216 TCAGACAAGCTTTGATTAGGCC 58.653 45.455 0.00 0.00 0.00 5.19
3307 3566 2.027192 ACAAGCTTTGATTAGGCCTCGA 60.027 45.455 9.68 0.00 0.00 4.04
3313 3572 5.482175 AGCTTTGATTAGGCCTCGACTATAT 59.518 40.000 9.68 0.00 0.00 0.86
3314 3573 6.014156 AGCTTTGATTAGGCCTCGACTATATT 60.014 38.462 9.68 0.00 0.00 1.28
3315 3574 6.651225 GCTTTGATTAGGCCTCGACTATATTT 59.349 38.462 9.68 0.00 0.00 1.40
3316 3575 7.173390 GCTTTGATTAGGCCTCGACTATATTTT 59.827 37.037 9.68 0.00 0.00 1.82
3317 3576 8.603242 TTTGATTAGGCCTCGACTATATTTTC 57.397 34.615 9.68 0.00 0.00 2.29
3318 3577 6.698380 TGATTAGGCCTCGACTATATTTTCC 58.302 40.000 9.68 0.00 0.00 3.13
3319 3578 3.662247 AGGCCTCGACTATATTTTCCG 57.338 47.619 0.00 0.00 0.00 4.30
3320 3579 2.299297 AGGCCTCGACTATATTTTCCGG 59.701 50.000 0.00 0.00 0.00 5.14
3321 3580 2.298163 GGCCTCGACTATATTTTCCGGA 59.702 50.000 0.00 0.00 0.00 5.14
3322 3581 3.315418 GCCTCGACTATATTTTCCGGAC 58.685 50.000 1.83 0.00 0.00 4.79
3323 3582 3.860002 GCCTCGACTATATTTTCCGGACC 60.860 52.174 1.83 0.00 0.00 4.46
3324 3583 3.562505 CTCGACTATATTTTCCGGACCG 58.437 50.000 1.83 6.99 0.00 4.79
3334 3593 3.771160 CCGGACCGGTTGAGGAGG 61.771 72.222 25.54 2.36 42.73 4.30
3335 3594 4.452733 CGGACCGGTTGAGGAGGC 62.453 72.222 9.42 0.00 34.73 4.70
3336 3595 3.003763 GGACCGGTTGAGGAGGCT 61.004 66.667 9.42 0.00 34.73 4.58
3337 3596 2.593956 GGACCGGTTGAGGAGGCTT 61.594 63.158 9.42 0.00 34.73 4.35
3338 3597 1.376037 GACCGGTTGAGGAGGCTTG 60.376 63.158 9.42 0.00 34.73 4.01
3339 3598 2.045926 CCGGTTGAGGAGGCTTGG 60.046 66.667 0.00 0.00 0.00 3.61
3340 3599 2.592993 CCGGTTGAGGAGGCTTGGA 61.593 63.158 0.00 0.00 0.00 3.53
3341 3600 1.376037 CGGTTGAGGAGGCTTGGAC 60.376 63.158 0.00 0.00 0.00 4.02
3342 3601 1.831652 CGGTTGAGGAGGCTTGGACT 61.832 60.000 0.00 0.00 0.00 3.85
3343 3602 0.402121 GGTTGAGGAGGCTTGGACTT 59.598 55.000 0.00 0.00 0.00 3.01
3344 3603 1.528129 GTTGAGGAGGCTTGGACTTG 58.472 55.000 0.00 0.00 0.00 3.16
3345 3604 0.401738 TTGAGGAGGCTTGGACTTGG 59.598 55.000 0.00 0.00 0.00 3.61
3362 3621 2.045561 TGGTTTTCGGAGCAGTTGAA 57.954 45.000 0.00 0.00 0.00 2.69
3368 3627 1.743252 CGGAGCAGTTGAAGAGGCC 60.743 63.158 0.00 0.00 0.00 5.19
3376 3635 0.402121 GTTGAAGAGGCCTGGACCTT 59.598 55.000 12.00 7.16 41.32 3.50
3377 3636 1.628846 GTTGAAGAGGCCTGGACCTTA 59.371 52.381 12.00 0.00 41.32 2.69
3378 3637 1.573108 TGAAGAGGCCTGGACCTTAG 58.427 55.000 12.00 0.00 41.32 2.18
3379 3638 0.179234 GAAGAGGCCTGGACCTTAGC 59.821 60.000 12.00 0.00 41.32 3.09
3380 3639 0.252927 AAGAGGCCTGGACCTTAGCT 60.253 55.000 12.00 0.00 41.32 3.32
3381 3640 0.980231 AGAGGCCTGGACCTTAGCTG 60.980 60.000 12.00 0.00 41.32 4.24
3382 3641 0.978146 GAGGCCTGGACCTTAGCTGA 60.978 60.000 12.00 0.00 41.32 4.26
3415 3677 4.503296 GCACCTATGGTCATAAGTGGTAGG 60.503 50.000 16.73 6.89 36.63 3.18
3441 3703 2.739932 GCCAGCATCATGTCGTTAGAGT 60.740 50.000 0.00 0.00 0.00 3.24
3450 3712 7.148885 GCATCATGTCGTTAGAGTAGCTTAATC 60.149 40.741 0.00 0.00 0.00 1.75
3452 3714 7.640852 TCATGTCGTTAGAGTAGCTTAATCTC 58.359 38.462 0.00 0.00 34.59 2.75
3456 3719 8.521176 TGTCGTTAGAGTAGCTTAATCTCTTTT 58.479 33.333 12.93 0.00 39.03 2.27
3492 3755 8.798402 AGAGTAGCTTAATTATAGGCAGTACTG 58.202 37.037 18.93 18.93 36.63 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.733227 CGCATCTTTGACATCTTTGGGC 60.733 50.000 0.00 0.00 0.00 5.36
35 36 2.283298 GCGGATCACATTCACTCACAT 58.717 47.619 0.00 0.00 0.00 3.21
36 37 1.001860 TGCGGATCACATTCACTCACA 59.998 47.619 0.00 0.00 0.00 3.58
37 38 1.725641 TGCGGATCACATTCACTCAC 58.274 50.000 0.00 0.00 0.00 3.51
38 39 2.093553 TCATGCGGATCACATTCACTCA 60.094 45.455 0.00 0.00 0.00 3.41
51 52 0.382158 GTCTCGAGTGATCATGCGGA 59.618 55.000 13.13 11.48 0.00 5.54
52 53 0.383590 AGTCTCGAGTGATCATGCGG 59.616 55.000 13.13 9.85 0.00 5.69
53 54 2.200792 AAGTCTCGAGTGATCATGCG 57.799 50.000 13.13 12.32 0.00 4.73
78 79 1.471501 GCCGGAATCATTTTCCTTGGC 60.472 52.381 5.05 7.30 37.72 4.52
84 85 3.372822 TGACTTACGCCGGAATCATTTTC 59.627 43.478 5.05 0.00 0.00 2.29
100 101 2.093658 GCGACCAGAAGGGATTGACTTA 60.094 50.000 0.00 0.00 41.15 2.24
127 128 2.951101 CGGAACCTACCCAACCGCT 61.951 63.158 0.00 0.00 37.32 5.52
128 129 2.435410 CGGAACCTACCCAACCGC 60.435 66.667 0.00 0.00 37.32 5.68
129 130 2.266689 CCGGAACCTACCCAACCG 59.733 66.667 0.00 0.00 42.67 4.44
130 131 2.045634 GCCGGAACCTACCCAACC 60.046 66.667 5.05 0.00 0.00 3.77
136 137 1.508808 TTGCGTTTGCCGGAACCTAC 61.509 55.000 5.05 0.00 42.27 3.18
182 183 4.742201 TCTGCTCGCCGGCAAGAC 62.742 66.667 28.98 14.44 41.94 3.01
183 184 4.441695 CTCTGCTCGCCGGCAAGA 62.442 66.667 28.98 20.68 41.94 3.02
257 258 2.404789 CTAAATGCTGGCGTGGCG 59.595 61.111 0.00 0.00 0.00 5.69
262 263 3.698029 ACTAAATGCTAAATGCTGGCG 57.302 42.857 0.00 0.00 43.37 5.69
273 279 1.024579 CGTCCGCCCAACTAAATGCT 61.025 55.000 0.00 0.00 0.00 3.79
274 280 1.303091 ACGTCCGCCCAACTAAATGC 61.303 55.000 0.00 0.00 0.00 3.56
277 283 0.968405 ACTACGTCCGCCCAACTAAA 59.032 50.000 0.00 0.00 0.00 1.85
284 290 0.030369 CAGACATACTACGTCCGCCC 59.970 60.000 0.00 0.00 33.70 6.13
293 299 2.476686 CGCCGTCGTTTCAGACATACTA 60.477 50.000 0.00 0.00 40.98 1.82
294 300 1.731424 CGCCGTCGTTTCAGACATACT 60.731 52.381 0.00 0.00 40.98 2.12
295 301 0.638746 CGCCGTCGTTTCAGACATAC 59.361 55.000 0.00 0.00 40.98 2.39
296 302 3.024423 CGCCGTCGTTTCAGACATA 57.976 52.632 0.00 0.00 40.98 2.29
297 303 3.856508 CGCCGTCGTTTCAGACAT 58.143 55.556 0.00 0.00 40.98 3.06
301 307 9.373803 GTAATCATACATACGCCGTCGTTTCAG 62.374 44.444 0.00 0.00 39.63 3.02
303 309 5.386729 GTAATCATACATACGCCGTCGTTTC 60.387 44.000 0.00 0.00 39.63 2.78
304 310 4.442073 GTAATCATACATACGCCGTCGTTT 59.558 41.667 0.00 0.00 39.63 3.60
305 311 3.976942 GTAATCATACATACGCCGTCGTT 59.023 43.478 0.00 0.00 39.63 3.85
306 312 3.251729 AGTAATCATACATACGCCGTCGT 59.748 43.478 0.00 0.00 42.21 4.34
308 314 4.790878 TCAGTAATCATACATACGCCGTC 58.209 43.478 0.00 0.00 34.29 4.79
309 315 4.841443 TCAGTAATCATACATACGCCGT 57.159 40.909 0.00 0.00 34.29 5.68
310 316 6.020599 GCTAATCAGTAATCATACATACGCCG 60.021 42.308 0.00 0.00 34.29 6.46
311 317 6.255887 GGCTAATCAGTAATCATACATACGCC 59.744 42.308 0.00 0.00 34.29 5.68
312 318 6.811665 TGGCTAATCAGTAATCATACATACGC 59.188 38.462 0.00 0.00 34.29 4.42
313 319 7.009631 GCTGGCTAATCAGTAATCATACATACG 59.990 40.741 0.00 0.00 37.12 3.06
314 320 8.037758 AGCTGGCTAATCAGTAATCATACATAC 58.962 37.037 0.00 0.00 37.12 2.39
315 321 8.138928 AGCTGGCTAATCAGTAATCATACATA 57.861 34.615 0.00 0.00 37.12 2.29
316 322 7.013823 AGCTGGCTAATCAGTAATCATACAT 57.986 36.000 0.00 0.00 37.12 2.29
317 323 6.425210 AGCTGGCTAATCAGTAATCATACA 57.575 37.500 0.00 0.00 37.12 2.29
318 324 5.574830 CGAGCTGGCTAATCAGTAATCATAC 59.425 44.000 0.00 0.00 37.12 2.39
319 325 5.714047 CGAGCTGGCTAATCAGTAATCATA 58.286 41.667 0.00 0.00 37.12 2.15
320 326 4.564041 CGAGCTGGCTAATCAGTAATCAT 58.436 43.478 0.00 0.00 37.12 2.45
322 328 2.734079 GCGAGCTGGCTAATCAGTAATC 59.266 50.000 14.13 0.00 37.12 1.75
323 329 2.548920 GGCGAGCTGGCTAATCAGTAAT 60.549 50.000 20.62 0.00 40.72 1.89
325 331 0.389391 GGCGAGCTGGCTAATCAGTA 59.611 55.000 20.62 0.00 40.72 2.74
326 332 1.144936 GGCGAGCTGGCTAATCAGT 59.855 57.895 20.62 0.00 40.72 3.41
327 333 1.953138 CGGCGAGCTGGCTAATCAG 60.953 63.158 20.62 2.12 42.02 2.90
328 334 2.106938 CGGCGAGCTGGCTAATCA 59.893 61.111 20.62 0.00 42.02 2.57
329 335 2.663188 CCGGCGAGCTGGCTAATC 60.663 66.667 20.62 2.61 42.02 1.75
330 336 2.925162 GAACCGGCGAGCTGGCTAAT 62.925 60.000 21.85 6.83 46.14 1.73
331 337 3.659089 GAACCGGCGAGCTGGCTAA 62.659 63.158 21.85 0.00 46.14 3.09
332 338 4.143333 GAACCGGCGAGCTGGCTA 62.143 66.667 21.85 0.00 46.14 3.93
405 411 4.329840 AACGTTCACGCGCGTTCG 62.330 61.111 35.90 34.32 46.53 3.95
408 414 4.287967 CCAAACGTTCACGCGCGT 62.288 61.111 32.73 32.73 44.43 6.01
412 418 3.944233 ACGGCCAAACGTTCACGC 61.944 61.111 2.24 3.29 46.25 5.34
419 425 4.072088 GAGCACGACGGCCAAACG 62.072 66.667 2.24 7.66 40.31 3.60
420 426 3.723348 GGAGCACGACGGCCAAAC 61.723 66.667 2.24 0.00 0.00 2.93
421 427 3.876589 GAGGAGCACGACGGCCAAA 62.877 63.158 2.24 0.00 0.00 3.28
422 428 4.373116 GAGGAGCACGACGGCCAA 62.373 66.667 2.24 0.00 0.00 4.52
425 431 4.803426 CAGGAGGAGCACGACGGC 62.803 72.222 0.00 0.00 0.00 5.68
426 432 3.057547 CTCAGGAGGAGCACGACGG 62.058 68.421 0.00 0.00 36.69 4.79
427 433 2.487428 CTCAGGAGGAGCACGACG 59.513 66.667 0.00 0.00 36.69 5.12
441 447 0.109272 GCGTGCTGTACTGTAGCTCA 60.109 55.000 5.40 0.00 41.66 4.26
442 448 0.802607 GGCGTGCTGTACTGTAGCTC 60.803 60.000 5.40 1.35 41.66 4.09
443 449 1.215647 GGCGTGCTGTACTGTAGCT 59.784 57.895 5.40 0.00 41.66 3.32
444 450 1.810030 GGGCGTGCTGTACTGTAGC 60.810 63.158 1.46 0.00 41.49 3.58
445 451 1.516386 CGGGCGTGCTGTACTGTAG 60.516 63.158 1.46 0.00 0.00 2.74
446 452 2.569657 CGGGCGTGCTGTACTGTA 59.430 61.111 1.46 0.00 0.00 2.74
447 453 4.373116 CCGGGCGTGCTGTACTGT 62.373 66.667 0.00 0.00 0.00 3.55
458 464 4.840005 GAAGAGAAGGGCCGGGCG 62.840 72.222 23.19 0.00 0.00 6.13
459 465 3.717294 TGAAGAGAAGGGCCGGGC 61.717 66.667 22.00 22.00 0.00 6.13
460 466 2.269241 GTGAAGAGAAGGGCCGGG 59.731 66.667 2.18 0.00 0.00 5.73
461 467 1.376037 GTGTGAAGAGAAGGGCCGG 60.376 63.158 0.00 0.00 0.00 6.13
462 468 1.376037 GGTGTGAAGAGAAGGGCCG 60.376 63.158 0.00 0.00 0.00 6.13
463 469 1.376037 CGGTGTGAAGAGAAGGGCC 60.376 63.158 0.00 0.00 0.00 5.80
464 470 0.670854 GTCGGTGTGAAGAGAAGGGC 60.671 60.000 0.00 0.00 0.00 5.19
465 471 0.679505 TGTCGGTGTGAAGAGAAGGG 59.320 55.000 0.00 0.00 0.00 3.95
466 472 1.341531 ACTGTCGGTGTGAAGAGAAGG 59.658 52.381 0.00 0.00 0.00 3.46
467 473 2.797156 CAACTGTCGGTGTGAAGAGAAG 59.203 50.000 0.00 0.00 0.00 2.85
468 474 2.821546 CAACTGTCGGTGTGAAGAGAA 58.178 47.619 0.00 0.00 0.00 2.87
469 475 1.538204 GCAACTGTCGGTGTGAAGAGA 60.538 52.381 0.00 0.00 0.00 3.10
471 477 0.531974 GGCAACTGTCGGTGTGAAGA 60.532 55.000 0.00 0.00 0.00 2.87
473 479 1.885388 CGGCAACTGTCGGTGTGAA 60.885 57.895 0.00 0.00 39.84 3.18
490 496 0.165295 CATGCTGTCACTTGCAGACG 59.835 55.000 2.78 0.00 42.74 4.18
491 497 1.069432 CACATGCTGTCACTTGCAGAC 60.069 52.381 0.00 0.00 42.74 3.51
492 498 1.232119 CACATGCTGTCACTTGCAGA 58.768 50.000 0.00 0.00 42.74 4.26
493 499 0.386858 GCACATGCTGTCACTTGCAG 60.387 55.000 0.00 0.00 42.74 4.41
494 500 1.655885 GCACATGCTGTCACTTGCA 59.344 52.632 0.00 0.00 43.67 4.08
504 510 1.446099 CTACGACACGGCACATGCT 60.446 57.895 3.48 0.00 41.70 3.79
506 512 1.403225 CGACTACGACACGGCACATG 61.403 60.000 0.00 0.00 42.66 3.21
507 513 1.154093 CGACTACGACACGGCACAT 60.154 57.895 0.00 0.00 42.66 3.21
510 516 0.166597 CTTACGACTACGACACGGCA 59.833 55.000 0.00 0.00 42.66 5.69
511 517 0.443869 TCTTACGACTACGACACGGC 59.556 55.000 0.00 0.00 42.66 5.68
512 518 4.512657 CTTATCTTACGACTACGACACGG 58.487 47.826 0.00 0.00 42.66 4.94
513 519 4.268644 TCCTTATCTTACGACTACGACACG 59.731 45.833 0.00 0.00 42.66 4.49
515 521 4.813161 CCTCCTTATCTTACGACTACGACA 59.187 45.833 0.00 0.00 42.66 4.35
516 522 5.053145 TCCTCCTTATCTTACGACTACGAC 58.947 45.833 0.00 0.00 42.66 4.34
517 523 5.282055 TCCTCCTTATCTTACGACTACGA 57.718 43.478 0.00 0.00 42.66 3.43
518 524 5.757320 TCTTCCTCCTTATCTTACGACTACG 59.243 44.000 0.00 0.00 45.75 3.51
520 526 7.228906 CACATCTTCCTCCTTATCTTACGACTA 59.771 40.741 0.00 0.00 0.00 2.59
522 528 6.183360 ACACATCTTCCTCCTTATCTTACGAC 60.183 42.308 0.00 0.00 0.00 4.34
524 530 5.980116 CACACATCTTCCTCCTTATCTTACG 59.020 44.000 0.00 0.00 0.00 3.18
525 531 6.879400 ACACACATCTTCCTCCTTATCTTAC 58.121 40.000 0.00 0.00 0.00 2.34
526 532 7.496346 AACACACATCTTCCTCCTTATCTTA 57.504 36.000 0.00 0.00 0.00 2.10
527 533 6.380079 AACACACATCTTCCTCCTTATCTT 57.620 37.500 0.00 0.00 0.00 2.40
528 534 6.013379 TGAAACACACATCTTCCTCCTTATCT 60.013 38.462 0.00 0.00 0.00 1.98
529 535 6.173339 TGAAACACACATCTTCCTCCTTATC 58.827 40.000 0.00 0.00 0.00 1.75
530 536 6.013379 TCTGAAACACACATCTTCCTCCTTAT 60.013 38.462 0.00 0.00 0.00 1.73
531 537 5.306937 TCTGAAACACACATCTTCCTCCTTA 59.693 40.000 0.00 0.00 0.00 2.69
532 538 4.103153 TCTGAAACACACATCTTCCTCCTT 59.897 41.667 0.00 0.00 0.00 3.36
534 540 3.748568 GTCTGAAACACACATCTTCCTCC 59.251 47.826 0.00 0.00 0.00 4.30
535 541 4.380531 TGTCTGAAACACACATCTTCCTC 58.619 43.478 0.00 0.00 31.20 3.71
536 542 4.422073 TGTCTGAAACACACATCTTCCT 57.578 40.909 0.00 0.00 31.20 3.36
537 543 4.756642 TGATGTCTGAAACACACATCTTCC 59.243 41.667 16.39 0.00 41.75 3.46
538 544 5.929697 TGATGTCTGAAACACACATCTTC 57.070 39.130 16.39 0.00 41.75 2.87
539 545 5.277490 CGTTGATGTCTGAAACACACATCTT 60.277 40.000 16.39 0.00 41.75 2.40
540 546 4.212004 CGTTGATGTCTGAAACACACATCT 59.788 41.667 16.39 0.00 41.75 2.90
541 547 4.457810 CGTTGATGTCTGAAACACACATC 58.542 43.478 11.26 11.26 41.75 3.06
542 548 3.303990 GCGTTGATGTCTGAAACACACAT 60.304 43.478 0.00 0.00 41.75 3.21
543 549 2.031560 GCGTTGATGTCTGAAACACACA 59.968 45.455 0.00 0.00 41.75 3.72
544 550 2.639751 GCGTTGATGTCTGAAACACAC 58.360 47.619 0.00 0.00 41.75 3.82
545 551 1.260297 CGCGTTGATGTCTGAAACACA 59.740 47.619 0.00 0.00 41.75 3.72
546 552 1.398451 CCGCGTTGATGTCTGAAACAC 60.398 52.381 4.92 0.00 41.75 3.32
547 553 0.865111 CCGCGTTGATGTCTGAAACA 59.135 50.000 4.92 0.00 43.51 2.83
548 554 0.452784 GCCGCGTTGATGTCTGAAAC 60.453 55.000 4.92 0.00 0.00 2.78
549 555 1.573829 GGCCGCGTTGATGTCTGAAA 61.574 55.000 4.92 0.00 0.00 2.69
550 556 2.032634 GGCCGCGTTGATGTCTGAA 61.033 57.895 4.92 0.00 0.00 3.02
551 557 2.434185 GGCCGCGTTGATGTCTGA 60.434 61.111 4.92 0.00 0.00 3.27
581 587 1.298859 AATTTCGCCGGAGACAGCAC 61.299 55.000 7.66 0.00 0.00 4.40
584 590 3.246226 CAGATAAATTTCGCCGGAGACAG 59.754 47.826 7.66 0.00 0.00 3.51
588 594 3.246226 CACTCAGATAAATTTCGCCGGAG 59.754 47.826 5.05 0.00 0.00 4.63
591 597 2.287915 CCCACTCAGATAAATTTCGCCG 59.712 50.000 0.00 0.00 0.00 6.46
593 599 2.286418 CGCCCACTCAGATAAATTTCGC 60.286 50.000 0.00 0.00 0.00 4.70
594 600 3.001330 GTCGCCCACTCAGATAAATTTCG 59.999 47.826 0.00 0.00 0.00 3.46
595 601 4.034510 CAGTCGCCCACTCAGATAAATTTC 59.965 45.833 0.00 0.00 30.26 2.17
596 602 3.941483 CAGTCGCCCACTCAGATAAATTT 59.059 43.478 0.00 0.00 30.26 1.82
597 603 3.535561 CAGTCGCCCACTCAGATAAATT 58.464 45.455 0.00 0.00 30.26 1.82
598 604 2.743183 GCAGTCGCCCACTCAGATAAAT 60.743 50.000 0.00 0.00 30.26 1.40
687 745 1.377725 CCTGTGATGCTGGACCACC 60.378 63.158 0.00 0.00 38.33 4.61
703 761 2.494530 GCAGCGGCTACTAGCTCCT 61.495 63.158 0.26 2.25 42.52 3.69
705 763 2.028337 GGCAGCGGCTACTAGCTC 59.972 66.667 9.17 1.14 42.52 4.09
706 764 3.541713 GGGCAGCGGCTACTAGCT 61.542 66.667 9.17 0.00 45.74 3.32
707 765 3.541713 AGGGCAGCGGCTACTAGC 61.542 66.667 9.17 1.13 41.46 3.42
708 766 2.419198 CAGGGCAGCGGCTACTAG 59.581 66.667 9.17 0.00 40.87 2.57
709 767 3.849951 GCAGGGCAGCGGCTACTA 61.850 66.667 9.17 0.00 40.87 1.82
767 830 3.941188 CGTGGTGGGTGTGGCTCT 61.941 66.667 0.00 0.00 0.00 4.09
823 894 3.787001 GGAGGAGGTTCAGGCCCG 61.787 72.222 0.00 0.00 0.00 6.13
825 896 4.475135 GCGGAGGAGGTTCAGGCC 62.475 72.222 0.00 0.00 0.00 5.19
958 1037 2.048603 GGTGGAGATGGCTTGGCAC 61.049 63.158 0.00 0.00 0.00 5.01
959 1038 2.202236 GAGGTGGAGATGGCTTGGCA 62.202 60.000 0.00 0.00 0.00 4.92
960 1039 1.452833 GAGGTGGAGATGGCTTGGC 60.453 63.158 0.00 0.00 0.00 4.52
961 1040 1.225704 GGAGGTGGAGATGGCTTGG 59.774 63.158 0.00 0.00 0.00 3.61
962 1041 0.393537 GTGGAGGTGGAGATGGCTTG 60.394 60.000 0.00 0.00 0.00 4.01
969 1048 2.603473 CGGTGGTGGAGGTGGAGA 60.603 66.667 0.00 0.00 0.00 3.71
1149 1230 2.996168 GATCGGCGGGTGAGGGAATG 62.996 65.000 7.21 0.00 0.00 2.67
1178 1259 3.494336 CCGAGCAAGCAAGCGGAG 61.494 66.667 13.30 0.00 46.29 4.63
1184 1265 2.693762 GCATCAGCCGAGCAAGCAA 61.694 57.895 0.00 0.00 33.58 3.91
1709 1796 0.326264 GCCACCAGTCCTTGATGTCT 59.674 55.000 0.00 0.00 0.00 3.41
2352 2451 2.126071 CACGTCGTAGGGGTGCTG 60.126 66.667 0.00 0.00 0.00 4.41
2506 2611 0.472471 AACCGAACTTGAAGCAGGGA 59.528 50.000 3.46 0.00 0.00 4.20
2507 2612 1.266989 GAAACCGAACTTGAAGCAGGG 59.733 52.381 0.00 0.00 0.00 4.45
2509 2614 2.224314 GGAGAAACCGAACTTGAAGCAG 59.776 50.000 0.00 0.00 0.00 4.24
2510 2615 2.218603 GGAGAAACCGAACTTGAAGCA 58.781 47.619 0.00 0.00 0.00 3.91
2511 2616 2.218603 TGGAGAAACCGAACTTGAAGC 58.781 47.619 0.00 0.00 42.61 3.86
2514 2625 2.151202 GCATGGAGAAACCGAACTTGA 58.849 47.619 0.00 0.00 42.61 3.02
2522 2633 4.068599 GCCTAATCTAGCATGGAGAAACC 58.931 47.826 0.00 0.00 39.54 3.27
2544 2655 3.383223 AGGATGAGGAGGAAGAAGAAGG 58.617 50.000 0.00 0.00 0.00 3.46
2546 2657 4.016666 AGAGAGGATGAGGAGGAAGAAGAA 60.017 45.833 0.00 0.00 0.00 2.52
2561 2692 1.149711 CATGGGAGGGAGAGAGAGGAT 59.850 57.143 0.00 0.00 0.00 3.24
2562 2693 0.560193 CATGGGAGGGAGAGAGAGGA 59.440 60.000 0.00 0.00 0.00 3.71
2563 2694 0.264359 ACATGGGAGGGAGAGAGAGG 59.736 60.000 0.00 0.00 0.00 3.69
2573 2706 2.292828 AGTGAACCAAACATGGGAGG 57.707 50.000 0.00 0.00 0.00 4.30
2577 2710 4.916983 TCAAGAAGTGAACCAAACATGG 57.083 40.909 0.00 0.00 31.51 3.66
2610 2743 3.259123 AGAAATGAATCTTTGGCACCACC 59.741 43.478 0.00 0.00 39.84 4.61
2655 2791 1.897802 GTTCGTCTCCTCCTTTACCCA 59.102 52.381 0.00 0.00 0.00 4.51
2656 2792 1.897802 TGTTCGTCTCCTCCTTTACCC 59.102 52.381 0.00 0.00 0.00 3.69
2682 2821 0.605050 TTGCTGCCTATGCGTGACAA 60.605 50.000 0.00 0.00 41.78 3.18
2688 2827 0.097674 GACACTTTGCTGCCTATGCG 59.902 55.000 0.00 0.00 41.78 4.73
2698 2837 6.981559 TGTAAATTAACCTTTGGACACTTTGC 59.018 34.615 0.00 0.00 0.00 3.68
2706 2845 9.629878 TTTACAGAGTGTAAATTAACCTTTGGA 57.370 29.630 7.93 0.00 44.93 3.53
2749 2889 3.398954 TTTTTCTCTGTGTGCGTTGTC 57.601 42.857 0.00 0.00 0.00 3.18
2750 2890 3.128589 ACATTTTTCTCTGTGTGCGTTGT 59.871 39.130 0.00 0.00 0.00 3.32
2753 2893 5.689383 ATTACATTTTTCTCTGTGTGCGT 57.311 34.783 0.00 0.00 0.00 5.24
2757 2897 9.423061 GGCAAATAATTACATTTTTCTCTGTGT 57.577 29.630 0.00 0.00 0.00 3.72
2818 2969 1.482954 TGCCCTGTCTCTCTCTGATG 58.517 55.000 0.00 0.00 0.00 3.07
2819 2970 2.040939 CATGCCCTGTCTCTCTCTGAT 58.959 52.381 0.00 0.00 0.00 2.90
2821 2972 1.134759 CACATGCCCTGTCTCTCTCTG 60.135 57.143 0.00 0.00 35.29 3.35
2822 2973 1.193323 CACATGCCCTGTCTCTCTCT 58.807 55.000 0.00 0.00 35.29 3.10
2823 2974 1.189752 TCACATGCCCTGTCTCTCTC 58.810 55.000 0.00 0.00 35.29 3.20
2825 2976 1.002430 TGTTCACATGCCCTGTCTCTC 59.998 52.381 0.00 0.00 35.29 3.20
2868 3023 1.526575 ATGACGCAGCAAGTTTGGGG 61.527 55.000 0.00 0.00 33.26 4.96
2883 3038 3.704231 ATGAGGGGGCACGCATGAC 62.704 63.158 5.55 0.00 45.96 3.06
2911 3066 8.963725 AGAATTGAAAGCATTATGTCTGATGAA 58.036 29.630 0.00 0.00 0.00 2.57
2912 3067 8.403236 CAGAATTGAAAGCATTATGTCTGATGA 58.597 33.333 0.00 0.00 33.41 2.92
2914 3069 8.404000 GTCAGAATTGAAAGCATTATGTCTGAT 58.596 33.333 9.83 0.00 40.57 2.90
2915 3070 7.148188 GGTCAGAATTGAAAGCATTATGTCTGA 60.148 37.037 4.50 4.50 37.29 3.27
2916 3071 6.971184 GGTCAGAATTGAAAGCATTATGTCTG 59.029 38.462 0.00 0.00 34.49 3.51
2917 3072 6.660521 TGGTCAGAATTGAAAGCATTATGTCT 59.339 34.615 0.00 0.00 34.49 3.41
2918 3073 6.855836 TGGTCAGAATTGAAAGCATTATGTC 58.144 36.000 0.00 0.00 34.49 3.06
2919 3074 6.626623 GCTGGTCAGAATTGAAAGCATTATGT 60.627 38.462 1.65 0.00 41.52 2.29
2922 3077 5.012239 AGCTGGTCAGAATTGAAAGCATTA 58.988 37.500 12.96 0.00 43.07 1.90
2944 3107 1.461127 CAAAAGTCGAAGCCTCCGAAG 59.539 52.381 0.00 0.00 37.81 3.79
2957 3120 8.336801 ACTGGTCCAAAATCTATACAAAAGTC 57.663 34.615 0.00 0.00 0.00 3.01
2964 3128 6.980051 ACGAAACTGGTCCAAAATCTATAC 57.020 37.500 0.00 0.00 0.00 1.47
2966 3130 5.183140 CCAACGAAACTGGTCCAAAATCTAT 59.817 40.000 0.00 0.00 0.00 1.98
2967 3131 4.517453 CCAACGAAACTGGTCCAAAATCTA 59.483 41.667 0.00 0.00 0.00 1.98
2968 3132 3.317993 CCAACGAAACTGGTCCAAAATCT 59.682 43.478 0.00 0.00 0.00 2.40
2970 3134 3.292460 TCCAACGAAACTGGTCCAAAAT 58.708 40.909 0.00 0.00 35.30 1.82
3022 3240 1.348036 AGGGCTTCTGTTCTGTGGTAC 59.652 52.381 0.00 0.00 0.00 3.34
3023 3241 1.347707 CAGGGCTTCTGTTCTGTGGTA 59.652 52.381 0.49 0.00 38.64 3.25
3024 3242 0.109342 CAGGGCTTCTGTTCTGTGGT 59.891 55.000 0.49 0.00 38.64 4.16
3025 3243 2.938354 CAGGGCTTCTGTTCTGTGG 58.062 57.895 0.49 0.00 38.64 4.17
3046 3264 1.255667 TAACCTCGGGTGTGGAGAGC 61.256 60.000 0.00 0.00 35.34 4.09
3085 3306 1.135859 GCTGGTCTGAAATGTTGCGAG 60.136 52.381 0.00 0.00 0.00 5.03
3127 3384 1.071857 GGCCCCTAAGCTGGTATGTAC 59.928 57.143 0.00 0.00 0.00 2.90
3128 3385 1.061657 AGGCCCCTAAGCTGGTATGTA 60.062 52.381 0.00 0.00 0.00 2.29
3129 3386 0.327576 AGGCCCCTAAGCTGGTATGT 60.328 55.000 0.00 0.00 0.00 2.29
3130 3387 0.846693 AAGGCCCCTAAGCTGGTATG 59.153 55.000 0.00 0.00 0.00 2.39
3131 3388 1.141185 GAAGGCCCCTAAGCTGGTAT 58.859 55.000 0.00 0.00 0.00 2.73
3132 3389 0.252974 TGAAGGCCCCTAAGCTGGTA 60.253 55.000 0.00 0.00 0.00 3.25
3134 3391 1.225704 CTGAAGGCCCCTAAGCTGG 59.774 63.158 0.00 0.00 0.00 4.85
3136 3393 1.617839 AGCTGAAGGCCCCTAAGCT 60.618 57.895 15.18 15.18 43.05 3.74
3137 3394 1.153066 GAGCTGAAGGCCCCTAAGC 60.153 63.158 0.00 3.87 43.05 3.09
3138 3395 0.179936 CAGAGCTGAAGGCCCCTAAG 59.820 60.000 0.00 0.00 43.05 2.18
3139 3396 0.547712 ACAGAGCTGAAGGCCCCTAA 60.548 55.000 0.00 0.00 43.05 2.69
3140 3397 0.338467 TACAGAGCTGAAGGCCCCTA 59.662 55.000 0.00 0.00 43.05 3.53
3141 3398 0.327000 ATACAGAGCTGAAGGCCCCT 60.327 55.000 0.00 0.00 43.05 4.79
3142 3399 0.548510 AATACAGAGCTGAAGGCCCC 59.451 55.000 0.00 0.00 43.05 5.80
3143 3400 2.424956 CAAAATACAGAGCTGAAGGCCC 59.575 50.000 0.00 0.00 43.05 5.80
3144 3401 3.084786 ACAAAATACAGAGCTGAAGGCC 58.915 45.455 4.21 0.00 43.05 5.19
3145 3402 4.695455 TGTACAAAATACAGAGCTGAAGGC 59.305 41.667 4.21 0.00 42.19 4.35
3146 3403 5.934625 ACTGTACAAAATACAGAGCTGAAGG 59.065 40.000 18.47 0.00 45.69 3.46
3147 3404 7.598869 TGTACTGTACAAAATACAGAGCTGAAG 59.401 37.037 17.74 0.00 45.69 3.02
3148 3405 7.438564 TGTACTGTACAAAATACAGAGCTGAA 58.561 34.615 17.74 0.00 45.69 3.02
3149 3406 6.988522 TGTACTGTACAAAATACAGAGCTGA 58.011 36.000 17.74 0.00 45.69 4.26
3150 3407 7.834068 ATGTACTGTACAAAATACAGAGCTG 57.166 36.000 23.03 0.00 45.69 4.24
3151 3408 7.980099 GGTATGTACTGTACAAAATACAGAGCT 59.020 37.037 23.03 6.20 45.69 4.09
3152 3409 7.762615 TGGTATGTACTGTACAAAATACAGAGC 59.237 37.037 23.03 20.53 45.69 4.09
3153 3410 9.302345 CTGGTATGTACTGTACAAAATACAGAG 57.698 37.037 23.03 15.33 45.69 3.35
3154 3411 7.762615 GCTGGTATGTACTGTACAAAATACAGA 59.237 37.037 26.77 15.80 45.69 3.41
3156 3413 7.617225 AGCTGGTATGTACTGTACAAAATACA 58.383 34.615 23.03 15.86 42.76 2.29
3157 3414 8.488651 AAGCTGGTATGTACTGTACAAAATAC 57.511 34.615 23.03 19.17 42.76 1.89
3158 3415 9.811995 CTAAGCTGGTATGTACTGTACAAAATA 57.188 33.333 23.03 9.74 42.76 1.40
3159 3416 7.769044 CCTAAGCTGGTATGTACTGTACAAAAT 59.231 37.037 23.03 10.69 42.76 1.82
3160 3417 7.101054 CCTAAGCTGGTATGTACTGTACAAAA 58.899 38.462 23.03 12.47 42.76 2.44
3161 3418 6.351541 CCCTAAGCTGGTATGTACTGTACAAA 60.352 42.308 23.03 9.55 42.76 2.83
3162 3419 5.128171 CCCTAAGCTGGTATGTACTGTACAA 59.872 44.000 23.03 10.82 42.76 2.41
3163 3420 4.647853 CCCTAAGCTGGTATGTACTGTACA 59.352 45.833 21.68 21.68 43.80 2.90
3164 3421 4.038883 CCCCTAAGCTGGTATGTACTGTAC 59.961 50.000 10.98 10.98 0.00 2.90
3165 3422 4.220724 CCCCTAAGCTGGTATGTACTGTA 58.779 47.826 0.00 0.00 0.00 2.74
3166 3423 3.039011 CCCCTAAGCTGGTATGTACTGT 58.961 50.000 0.00 0.00 0.00 3.55
3167 3424 2.224305 GCCCCTAAGCTGGTATGTACTG 60.224 54.545 0.00 0.00 0.00 2.74
3168 3425 2.047830 GCCCCTAAGCTGGTATGTACT 58.952 52.381 0.00 0.00 0.00 2.73
3169 3426 1.071857 GGCCCCTAAGCTGGTATGTAC 59.928 57.143 0.00 0.00 0.00 2.90
3170 3427 1.061657 AGGCCCCTAAGCTGGTATGTA 60.062 52.381 0.00 0.00 0.00 2.29
3171 3428 0.327576 AGGCCCCTAAGCTGGTATGT 60.328 55.000 0.00 0.00 0.00 2.29
3172 3429 0.846693 AAGGCCCCTAAGCTGGTATG 59.153 55.000 0.00 0.00 0.00 2.39
3173 3430 1.141185 GAAGGCCCCTAAGCTGGTAT 58.859 55.000 0.00 0.00 0.00 2.73
3174 3431 0.252974 TGAAGGCCCCTAAGCTGGTA 60.253 55.000 0.00 0.00 0.00 3.25
3175 3432 1.541368 TGAAGGCCCCTAAGCTGGT 60.541 57.895 0.00 0.00 0.00 4.00
3176 3433 1.225704 CTGAAGGCCCCTAAGCTGG 59.774 63.158 0.00 0.00 0.00 4.85
3177 3434 1.452833 GCTGAAGGCCCCTAAGCTG 60.453 63.158 0.00 1.41 34.78 4.24
3178 3435 1.617839 AGCTGAAGGCCCCTAAGCT 60.618 57.895 15.18 15.18 43.05 3.74
3179 3436 1.153066 GAGCTGAAGGCCCCTAAGC 60.153 63.158 0.00 3.87 43.05 3.09
3180 3437 0.179936 CAGAGCTGAAGGCCCCTAAG 59.820 60.000 0.00 0.00 43.05 2.18
3181 3438 0.547712 ACAGAGCTGAAGGCCCCTAA 60.548 55.000 0.00 0.00 43.05 2.69
3182 3439 0.338467 TACAGAGCTGAAGGCCCCTA 59.662 55.000 0.00 0.00 43.05 3.53
3183 3440 0.327000 ATACAGAGCTGAAGGCCCCT 60.327 55.000 0.00 0.00 43.05 4.79
3184 3441 0.548510 AATACAGAGCTGAAGGCCCC 59.451 55.000 0.00 0.00 43.05 5.80
3185 3442 2.424956 CAAAATACAGAGCTGAAGGCCC 59.575 50.000 0.00 0.00 43.05 5.80
3186 3443 3.084786 ACAAAATACAGAGCTGAAGGCC 58.915 45.455 4.21 0.00 43.05 5.19
3187 3444 4.095036 GGTACAAAATACAGAGCTGAAGGC 59.905 45.833 4.21 0.00 42.19 4.35
3188 3445 4.330074 CGGTACAAAATACAGAGCTGAAGG 59.670 45.833 4.21 0.00 0.00 3.46
3189 3446 4.929808 ACGGTACAAAATACAGAGCTGAAG 59.070 41.667 4.21 0.00 0.00 3.02
3190 3447 4.890088 ACGGTACAAAATACAGAGCTGAA 58.110 39.130 4.21 0.00 0.00 3.02
3191 3448 4.530710 ACGGTACAAAATACAGAGCTGA 57.469 40.909 4.21 0.00 0.00 4.26
3192 3449 5.165676 TGTACGGTACAAAATACAGAGCTG 58.834 41.667 18.11 0.00 35.38 4.24
3193 3450 5.395682 TGTACGGTACAAAATACAGAGCT 57.604 39.130 18.11 0.00 35.38 4.09
3194 3451 6.199719 GGTATGTACGGTACAAAATACAGAGC 59.800 42.308 23.40 5.66 42.76 4.09
3195 3452 7.259882 TGGTATGTACGGTACAAAATACAGAG 58.740 38.462 23.40 0.00 42.76 3.35
3196 3453 7.167924 TGGTATGTACGGTACAAAATACAGA 57.832 36.000 23.40 10.06 42.76 3.41
3197 3454 6.019318 GCTGGTATGTACGGTACAAAATACAG 60.019 42.308 23.40 23.05 42.76 2.74
3198 3455 5.811613 GCTGGTATGTACGGTACAAAATACA 59.188 40.000 23.40 16.14 42.76 2.29
3199 3456 6.044682 AGCTGGTATGTACGGTACAAAATAC 58.955 40.000 23.40 19.47 42.76 1.89
3200 3457 6.224665 AGCTGGTATGTACGGTACAAAATA 57.775 37.500 23.40 10.05 42.76 1.40
3201 3458 5.093849 AGCTGGTATGTACGGTACAAAAT 57.906 39.130 23.40 11.01 42.76 1.82
3202 3459 4.540359 AGCTGGTATGTACGGTACAAAA 57.460 40.909 23.40 12.77 42.76 2.44
3203 3460 4.540359 AAGCTGGTATGTACGGTACAAA 57.460 40.909 23.40 9.83 42.76 2.83
3204 3461 4.098349 CCTAAGCTGGTATGTACGGTACAA 59.902 45.833 23.40 11.11 42.76 2.41
3205 3462 3.633525 CCTAAGCTGGTATGTACGGTACA 59.366 47.826 22.05 22.05 43.80 2.90
3206 3463 3.005155 CCCTAAGCTGGTATGTACGGTAC 59.995 52.174 11.33 11.33 0.00 3.34
3207 3464 3.225104 CCCTAAGCTGGTATGTACGGTA 58.775 50.000 0.00 0.00 0.00 4.02
3208 3465 2.037144 CCCTAAGCTGGTATGTACGGT 58.963 52.381 0.00 0.00 0.00 4.83
3209 3466 1.343465 CCCCTAAGCTGGTATGTACGG 59.657 57.143 0.00 0.00 0.00 4.02
3210 3467 1.270147 GCCCCTAAGCTGGTATGTACG 60.270 57.143 0.00 0.00 0.00 3.67
3211 3468 1.071857 GGCCCCTAAGCTGGTATGTAC 59.928 57.143 0.00 0.00 0.00 2.90
3212 3469 1.061657 AGGCCCCTAAGCTGGTATGTA 60.062 52.381 0.00 0.00 0.00 2.29
3213 3470 0.327576 AGGCCCCTAAGCTGGTATGT 60.328 55.000 0.00 0.00 0.00 2.29
3214 3471 0.846693 AAGGCCCCTAAGCTGGTATG 59.153 55.000 0.00 0.00 0.00 2.39
3215 3472 1.141185 GAAGGCCCCTAAGCTGGTAT 58.859 55.000 0.00 0.00 0.00 2.73
3216 3473 0.252974 TGAAGGCCCCTAAGCTGGTA 60.253 55.000 0.00 0.00 0.00 3.25
3217 3474 1.541368 TGAAGGCCCCTAAGCTGGT 60.541 57.895 0.00 0.00 0.00 4.00
3218 3475 1.225704 CTGAAGGCCCCTAAGCTGG 59.774 63.158 0.00 0.00 0.00 4.85
3219 3476 1.452833 GCTGAAGGCCCCTAAGCTG 60.453 63.158 0.00 1.41 34.78 4.24
3220 3477 1.617839 AGCTGAAGGCCCCTAAGCT 60.618 57.895 15.18 15.18 43.05 3.74
3221 3478 1.153066 GAGCTGAAGGCCCCTAAGC 60.153 63.158 0.00 3.87 43.05 3.09
3222 3479 1.794714 TAGAGCTGAAGGCCCCTAAG 58.205 55.000 0.00 0.00 43.05 2.18
3233 3490 9.725019 TTGAACTTTTCTCAAATATAGAGCTGA 57.275 29.630 0.00 0.00 33.15 4.26
3247 3506 5.082723 GTCGCTGCTAATTGAACTTTTCTC 58.917 41.667 0.00 0.00 0.00 2.87
3251 3510 3.365364 GCTGTCGCTGCTAATTGAACTTT 60.365 43.478 0.00 0.00 0.00 2.66
3253 3512 1.734465 GCTGTCGCTGCTAATTGAACT 59.266 47.619 0.00 0.00 0.00 3.01
3283 3542 3.350833 AGGCCTAATCAAAGCTTGTCTG 58.649 45.455 1.29 0.00 0.00 3.51
3284 3543 3.615155 GAGGCCTAATCAAAGCTTGTCT 58.385 45.455 4.42 0.00 0.00 3.41
3285 3544 2.352960 CGAGGCCTAATCAAAGCTTGTC 59.647 50.000 4.42 0.00 0.00 3.18
3286 3545 2.027192 TCGAGGCCTAATCAAAGCTTGT 60.027 45.455 4.42 0.00 0.00 3.16
3287 3546 2.352960 GTCGAGGCCTAATCAAAGCTTG 59.647 50.000 4.42 0.00 0.00 4.01
3288 3547 2.237392 AGTCGAGGCCTAATCAAAGCTT 59.763 45.455 4.42 0.00 0.00 3.74
3290 3549 2.317530 AGTCGAGGCCTAATCAAAGC 57.682 50.000 4.42 0.00 0.00 3.51
3291 3550 8.608844 AAAATATAGTCGAGGCCTAATCAAAG 57.391 34.615 4.42 0.00 0.00 2.77
3292 3551 7.660208 GGAAAATATAGTCGAGGCCTAATCAAA 59.340 37.037 4.42 0.00 0.00 2.69
3303 3562 3.562505 CGGTCCGGAAAATATAGTCGAG 58.437 50.000 5.23 0.00 0.00 4.04
3318 3577 4.452733 GCCTCCTCAACCGGTCCG 62.453 72.222 8.04 3.60 0.00 4.79
3319 3578 2.593956 AAGCCTCCTCAACCGGTCC 61.594 63.158 8.04 0.00 0.00 4.46
3320 3579 1.376037 CAAGCCTCCTCAACCGGTC 60.376 63.158 8.04 0.00 0.00 4.79
3321 3580 2.750350 CAAGCCTCCTCAACCGGT 59.250 61.111 0.00 0.00 0.00 5.28
3322 3581 2.045926 CCAAGCCTCCTCAACCGG 60.046 66.667 0.00 0.00 0.00 5.28
3323 3582 1.376037 GTCCAAGCCTCCTCAACCG 60.376 63.158 0.00 0.00 0.00 4.44
3324 3583 0.402121 AAGTCCAAGCCTCCTCAACC 59.598 55.000 0.00 0.00 0.00 3.77
3325 3584 1.528129 CAAGTCCAAGCCTCCTCAAC 58.472 55.000 0.00 0.00 0.00 3.18
3326 3585 0.401738 CCAAGTCCAAGCCTCCTCAA 59.598 55.000 0.00 0.00 0.00 3.02
3327 3586 0.768221 ACCAAGTCCAAGCCTCCTCA 60.768 55.000 0.00 0.00 0.00 3.86
3328 3587 0.402121 AACCAAGTCCAAGCCTCCTC 59.598 55.000 0.00 0.00 0.00 3.71
3329 3588 0.853530 AAACCAAGTCCAAGCCTCCT 59.146 50.000 0.00 0.00 0.00 3.69
3330 3589 1.613925 GAAAACCAAGTCCAAGCCTCC 59.386 52.381 0.00 0.00 0.00 4.30
3331 3590 1.266989 CGAAAACCAAGTCCAAGCCTC 59.733 52.381 0.00 0.00 0.00 4.70
3332 3591 1.318576 CGAAAACCAAGTCCAAGCCT 58.681 50.000 0.00 0.00 0.00 4.58
3333 3592 0.313987 CCGAAAACCAAGTCCAAGCC 59.686 55.000 0.00 0.00 0.00 4.35
3334 3593 1.266989 CTCCGAAAACCAAGTCCAAGC 59.733 52.381 0.00 0.00 0.00 4.01
3335 3594 1.266989 GCTCCGAAAACCAAGTCCAAG 59.733 52.381 0.00 0.00 0.00 3.61
3336 3595 1.314730 GCTCCGAAAACCAAGTCCAA 58.685 50.000 0.00 0.00 0.00 3.53
3337 3596 0.181587 TGCTCCGAAAACCAAGTCCA 59.818 50.000 0.00 0.00 0.00 4.02
3338 3597 0.875059 CTGCTCCGAAAACCAAGTCC 59.125 55.000 0.00 0.00 0.00 3.85
3339 3598 1.594331 ACTGCTCCGAAAACCAAGTC 58.406 50.000 0.00 0.00 0.00 3.01
3340 3599 1.676006 CAACTGCTCCGAAAACCAAGT 59.324 47.619 0.00 0.00 0.00 3.16
3341 3600 1.946768 TCAACTGCTCCGAAAACCAAG 59.053 47.619 0.00 0.00 0.00 3.61
3342 3601 2.045561 TCAACTGCTCCGAAAACCAA 57.954 45.000 0.00 0.00 0.00 3.67
3343 3602 1.946768 CTTCAACTGCTCCGAAAACCA 59.053 47.619 0.00 0.00 0.00 3.67
3344 3603 2.218603 TCTTCAACTGCTCCGAAAACC 58.781 47.619 0.00 0.00 0.00 3.27
3345 3604 2.224314 CCTCTTCAACTGCTCCGAAAAC 59.776 50.000 0.00 0.00 0.00 2.43
3362 3621 0.980231 CAGCTAAGGTCCAGGCCTCT 60.980 60.000 0.00 0.00 38.03 3.69
3378 3637 2.035530 AGGTGCTTTGAGCTATCAGC 57.964 50.000 1.29 3.96 42.97 4.26
3379 3638 4.063689 CCATAGGTGCTTTGAGCTATCAG 58.936 47.826 1.29 0.00 42.97 2.90
3380 3639 3.455910 ACCATAGGTGCTTTGAGCTATCA 59.544 43.478 1.29 0.00 42.97 2.15
3381 3640 4.061596 GACCATAGGTGCTTTGAGCTATC 58.938 47.826 0.00 0.00 42.97 2.08
3382 3641 3.455910 TGACCATAGGTGCTTTGAGCTAT 59.544 43.478 0.00 0.00 42.97 2.97
3415 3677 2.305405 GACATGATGCTGGCGAGTC 58.695 57.895 0.00 0.00 0.00 3.36
3466 3729 8.798402 CAGTACTGCCTATAATTAAGCTACTCT 58.202 37.037 10.54 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.