Multiple sequence alignment - TraesCS7A01G411300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G411300 | chr7A | 100.000 | 3113 | 0 | 0 | 1 | 3113 | 602097802 | 602100914 | 0.000000e+00 | 5749 |
1 | TraesCS7A01G411300 | chr7A | 77.453 | 479 | 53 | 25 | 1001 | 1470 | 602659033 | 602658601 | 5.190000e-58 | 235 |
2 | TraesCS7A01G411300 | chr7B | 93.078 | 1358 | 59 | 7 | 213 | 1539 | 555654701 | 555656054 | 0.000000e+00 | 1954 |
3 | TraesCS7A01G411300 | chr7B | 92.083 | 720 | 42 | 8 | 1534 | 2251 | 555656081 | 555656787 | 0.000000e+00 | 1000 |
4 | TraesCS7A01G411300 | chr7B | 83.558 | 815 | 65 | 22 | 2293 | 3087 | 555656798 | 555657563 | 0.000000e+00 | 699 |
5 | TraesCS7A01G411300 | chr7B | 79.630 | 594 | 76 | 28 | 1537 | 2126 | 556333129 | 556332577 | 4.870000e-103 | 385 |
6 | TraesCS7A01G411300 | chr7B | 77.149 | 477 | 71 | 17 | 1001 | 1470 | 556333680 | 556333235 | 3.100000e-60 | 243 |
7 | TraesCS7A01G411300 | chr7B | 93.130 | 131 | 6 | 2 | 102 | 230 | 555654555 | 555654684 | 4.100000e-44 | 189 |
8 | TraesCS7A01G411300 | chr7D | 93.820 | 1165 | 40 | 9 | 403 | 1539 | 521762844 | 521764004 | 0.000000e+00 | 1724 |
9 | TraesCS7A01G411300 | chr7D | 90.190 | 948 | 58 | 17 | 1534 | 2465 | 521764037 | 521764965 | 0.000000e+00 | 1203 |
10 | TraesCS7A01G411300 | chr7D | 86.342 | 637 | 54 | 19 | 2458 | 3086 | 521764995 | 521765606 | 0.000000e+00 | 664 |
11 | TraesCS7A01G411300 | chr7D | 77.393 | 606 | 74 | 24 | 1533 | 2129 | 522154460 | 522153909 | 5.050000e-78 | 302 |
12 | TraesCS7A01G411300 | chr1D | 77.778 | 333 | 37 | 18 | 488 | 814 | 37528511 | 37528210 | 1.480000e-38 | 171 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G411300 | chr7A | 602097802 | 602100914 | 3112 | False | 5749.0 | 5749 | 100.000000 | 1 | 3113 | 1 | chr7A.!!$F1 | 3112 |
1 | TraesCS7A01G411300 | chr7B | 555654555 | 555657563 | 3008 | False | 960.5 | 1954 | 90.462250 | 102 | 3087 | 4 | chr7B.!!$F1 | 2985 |
2 | TraesCS7A01G411300 | chr7B | 556332577 | 556333680 | 1103 | True | 314.0 | 385 | 78.389500 | 1001 | 2126 | 2 | chr7B.!!$R1 | 1125 |
3 | TraesCS7A01G411300 | chr7D | 521762844 | 521765606 | 2762 | False | 1197.0 | 1724 | 90.117333 | 403 | 3086 | 3 | chr7D.!!$F1 | 2683 |
4 | TraesCS7A01G411300 | chr7D | 522153909 | 522154460 | 551 | True | 302.0 | 302 | 77.393000 | 1533 | 2129 | 1 | chr7D.!!$R1 | 596 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
20 | 21 | 0.878086 | GTAGCTCCGAGCAGGCAATC | 60.878 | 60.0 | 22.29 | 1.31 | 45.56 | 2.67 | F |
23 | 24 | 1.028868 | GCTCCGAGCAGGCAATCTTT | 61.029 | 55.0 | 15.78 | 0.00 | 41.89 | 2.52 | F |
955 | 1037 | 1.159285 | CCAACGACATGCACACAGAT | 58.841 | 50.0 | 0.00 | 0.00 | 0.00 | 2.90 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1145 | 1232 | 0.390472 | CGTGCCTTTCTCACCCTCTC | 60.390 | 60.0 | 0.00 | 0.00 | 0.00 | 3.20 | R |
1587 | 1743 | 0.752054 | GACATCTCCAGGAGCCTCTG | 59.248 | 60.0 | 12.26 | 8.78 | 34.70 | 3.35 | R |
2183 | 2371 | 0.662619 | TTTTTGTCCTCTGCGTGCAG | 59.337 | 50.0 | 15.59 | 15.59 | 44.86 | 4.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.826754 | CGTAGCTCCGAGCAGGCA | 61.827 | 66.667 | 22.29 | 1.79 | 45.56 | 4.75 |
18 | 19 | 2.579201 | GTAGCTCCGAGCAGGCAA | 59.421 | 61.111 | 22.29 | 0.00 | 45.56 | 4.52 |
19 | 20 | 1.144936 | GTAGCTCCGAGCAGGCAAT | 59.855 | 57.895 | 22.29 | 3.05 | 45.56 | 3.56 |
20 | 21 | 0.878086 | GTAGCTCCGAGCAGGCAATC | 60.878 | 60.000 | 22.29 | 1.31 | 45.56 | 2.67 |
21 | 22 | 1.045350 | TAGCTCCGAGCAGGCAATCT | 61.045 | 55.000 | 22.29 | 1.58 | 45.56 | 2.40 |
22 | 23 | 1.451028 | GCTCCGAGCAGGCAATCTT | 60.451 | 57.895 | 15.78 | 0.00 | 41.89 | 2.40 |
23 | 24 | 1.028868 | GCTCCGAGCAGGCAATCTTT | 61.029 | 55.000 | 15.78 | 0.00 | 41.89 | 2.52 |
24 | 25 | 1.457346 | CTCCGAGCAGGCAATCTTTT | 58.543 | 50.000 | 0.00 | 0.00 | 40.77 | 2.27 |
25 | 26 | 2.632377 | CTCCGAGCAGGCAATCTTTTA | 58.368 | 47.619 | 0.00 | 0.00 | 40.77 | 1.52 |
26 | 27 | 2.352960 | CTCCGAGCAGGCAATCTTTTAC | 59.647 | 50.000 | 0.00 | 0.00 | 40.77 | 2.01 |
27 | 28 | 2.083774 | CCGAGCAGGCAATCTTTTACA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
28 | 29 | 2.487762 | CCGAGCAGGCAATCTTTTACAA | 59.512 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
29 | 30 | 3.129287 | CCGAGCAGGCAATCTTTTACAAT | 59.871 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
30 | 31 | 4.380867 | CCGAGCAGGCAATCTTTTACAATT | 60.381 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
31 | 32 | 4.795278 | CGAGCAGGCAATCTTTTACAATTC | 59.205 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
32 | 33 | 5.077134 | AGCAGGCAATCTTTTACAATTCC | 57.923 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
33 | 34 | 3.859386 | GCAGGCAATCTTTTACAATTCCG | 59.141 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
34 | 35 | 4.618227 | GCAGGCAATCTTTTACAATTCCGT | 60.618 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
35 | 36 | 4.858692 | CAGGCAATCTTTTACAATTCCGTG | 59.141 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
36 | 37 | 4.082245 | AGGCAATCTTTTACAATTCCGTGG | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
37 | 38 | 4.321675 | GGCAATCTTTTACAATTCCGTGGT | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
38 | 39 | 4.621034 | GCAATCTTTTACAATTCCGTGGTG | 59.379 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
39 | 40 | 5.563867 | GCAATCTTTTACAATTCCGTGGTGA | 60.564 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
40 | 41 | 6.442952 | CAATCTTTTACAATTCCGTGGTGAA | 58.557 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
41 | 42 | 6.834168 | ATCTTTTACAATTCCGTGGTGAAT | 57.166 | 33.333 | 0.00 | 0.00 | 36.53 | 2.57 |
42 | 43 | 6.642707 | TCTTTTACAATTCCGTGGTGAATT | 57.357 | 33.333 | 0.00 | 0.00 | 43.84 | 2.17 |
43 | 44 | 7.747155 | TCTTTTACAATTCCGTGGTGAATTA | 57.253 | 32.000 | 0.00 | 0.00 | 41.74 | 1.40 |
44 | 45 | 8.343168 | TCTTTTACAATTCCGTGGTGAATTAT | 57.657 | 30.769 | 0.00 | 0.00 | 41.74 | 1.28 |
45 | 46 | 9.451002 | TCTTTTACAATTCCGTGGTGAATTATA | 57.549 | 29.630 | 0.00 | 0.00 | 41.74 | 0.98 |
46 | 47 | 9.498307 | CTTTTACAATTCCGTGGTGAATTATAC | 57.502 | 33.333 | 0.00 | 0.00 | 41.74 | 1.47 |
47 | 48 | 8.795842 | TTTACAATTCCGTGGTGAATTATACT | 57.204 | 30.769 | 0.00 | 0.00 | 41.74 | 2.12 |
48 | 49 | 9.887629 | TTTACAATTCCGTGGTGAATTATACTA | 57.112 | 29.630 | 0.00 | 0.00 | 41.74 | 1.82 |
49 | 50 | 9.887629 | TTACAATTCCGTGGTGAATTATACTAA | 57.112 | 29.630 | 0.00 | 0.00 | 41.74 | 2.24 |
50 | 51 | 8.974060 | ACAATTCCGTGGTGAATTATACTAAT | 57.026 | 30.769 | 0.00 | 0.00 | 41.74 | 1.73 |
54 | 55 | 8.542497 | TTCCGTGGTGAATTATACTAATATGC | 57.458 | 34.615 | 0.00 | 0.00 | 0.00 | 3.14 |
55 | 56 | 7.672240 | TCCGTGGTGAATTATACTAATATGCA | 58.328 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
56 | 57 | 8.151596 | TCCGTGGTGAATTATACTAATATGCAA | 58.848 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
57 | 58 | 8.227791 | CCGTGGTGAATTATACTAATATGCAAC | 58.772 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
58 | 59 | 8.769891 | CGTGGTGAATTATACTAATATGCAACA | 58.230 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
59 | 60 | 9.878599 | GTGGTGAATTATACTAATATGCAACAC | 57.121 | 33.333 | 0.00 | 0.00 | 34.81 | 3.32 |
60 | 61 | 9.845740 | TGGTGAATTATACTAATATGCAACACT | 57.154 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
74 | 75 | 9.950680 | AATATGCAACACTAATTAAGTACATGC | 57.049 | 29.630 | 0.00 | 9.32 | 39.14 | 4.06 |
75 | 76 | 6.809630 | TGCAACACTAATTAAGTACATGCA | 57.190 | 33.333 | 9.66 | 9.66 | 42.83 | 3.96 |
76 | 77 | 7.389803 | TGCAACACTAATTAAGTACATGCAT | 57.610 | 32.000 | 0.00 | 0.00 | 41.47 | 3.96 |
77 | 78 | 8.499403 | TGCAACACTAATTAAGTACATGCATA | 57.501 | 30.769 | 0.00 | 0.00 | 41.47 | 3.14 |
78 | 79 | 8.951243 | TGCAACACTAATTAAGTACATGCATAA | 58.049 | 29.630 | 0.00 | 0.00 | 41.47 | 1.90 |
79 | 80 | 9.781834 | GCAACACTAATTAAGTACATGCATAAA | 57.218 | 29.630 | 0.00 | 0.00 | 38.81 | 1.40 |
112 | 113 | 2.073816 | ACATGTACCCTTTCGCTTTCG | 58.926 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
142 | 143 | 1.893137 | GGAAATTCAAGGGTGGACCAC | 59.107 | 52.381 | 16.86 | 16.86 | 43.89 | 4.16 |
158 | 159 | 3.006967 | GGACCACTTTCAAGTCTAGCTCA | 59.993 | 47.826 | 0.00 | 0.00 | 37.08 | 4.26 |
162 | 163 | 3.426859 | CACTTTCAAGTCTAGCTCACACG | 59.573 | 47.826 | 0.00 | 0.00 | 37.08 | 4.49 |
163 | 164 | 3.318275 | ACTTTCAAGTCTAGCTCACACGA | 59.682 | 43.478 | 0.00 | 0.00 | 32.86 | 4.35 |
164 | 165 | 3.560902 | TTCAAGTCTAGCTCACACGAG | 57.439 | 47.619 | 0.00 | 0.00 | 42.66 | 4.18 |
239 | 275 | 6.822073 | TGAAAATGTCTATCGTTATGACCG | 57.178 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
249 | 285 | 3.281158 | TCGTTATGACCGACCACAGATA | 58.719 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
252 | 288 | 4.274214 | CGTTATGACCGACCACAGATACTA | 59.726 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
256 | 292 | 4.784177 | TGACCGACCACAGATACTACATA | 58.216 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
358 | 396 | 4.846779 | ACAAATTGACAACGCCAATACT | 57.153 | 36.364 | 0.00 | 0.00 | 33.51 | 2.12 |
397 | 435 | 4.723248 | CGTGCCTTTCCTTCTTGTAAATC | 58.277 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
407 | 459 | 5.013079 | TCCTTCTTGTAAATCTTCTCCAGCA | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
452 | 504 | 3.885484 | ATGAGTGCGTTTTGTCTGAAG | 57.115 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
484 | 536 | 3.387225 | GAGGGCGCACTACCTTCCC | 62.387 | 68.421 | 14.87 | 0.00 | 37.18 | 3.97 |
595 | 652 | 5.239306 | TCATAAATCCGGTTTCATGATCTGC | 59.761 | 40.000 | 6.95 | 0.00 | 0.00 | 4.26 |
609 | 666 | 5.123344 | TCATGATCTGCACAAACTTCTCATG | 59.877 | 40.000 | 0.00 | 0.00 | 39.86 | 3.07 |
703 | 760 | 8.361889 | TGCTACTTTGTACTGATGTAACTGTTA | 58.638 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
793 | 851 | 4.067896 | TCTCAGAAAGGCAAAGATCACAC | 58.932 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
846 | 919 | 6.824305 | TGAGAAAACCAATCTCAGGATTTC | 57.176 | 37.500 | 2.27 | 6.80 | 46.23 | 2.17 |
955 | 1037 | 1.159285 | CCAACGACATGCACACAGAT | 58.841 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1067 | 1151 | 2.357952 | AGCACCGAAACAAAAGTTCCTC | 59.642 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
1145 | 1232 | 3.074412 | ACCCTGATTTTGTGAGCTAACG | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1221 | 1309 | 1.268079 | GCCACAGAAAGAACCAAGCTC | 59.732 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
1409 | 1497 | 4.507916 | TCCTCCTCCTCCTCGCCG | 62.508 | 72.222 | 0.00 | 0.00 | 0.00 | 6.46 |
1514 | 1632 | 4.401022 | TGTGTGCATCAATCTCCTCTTTT | 58.599 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
1518 | 1636 | 4.335037 | GTGCATCAATCTCCTCTTTTCTCC | 59.665 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
1587 | 1743 | 2.899900 | ACTTTTCCAGAAATCCAAGGCC | 59.100 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
1605 | 1761 | 2.913463 | CAGAGGCTCCTGGAGATGT | 58.087 | 57.895 | 27.53 | 10.31 | 0.00 | 3.06 |
1611 | 1767 | 0.667993 | GCTCCTGGAGATGTCGAGAG | 59.332 | 60.000 | 27.53 | 1.31 | 30.18 | 3.20 |
1823 | 1979 | 2.607187 | GCGCTCAGCTTCTAAAGTACA | 58.393 | 47.619 | 0.00 | 0.00 | 44.04 | 2.90 |
1824 | 1980 | 2.600867 | GCGCTCAGCTTCTAAAGTACAG | 59.399 | 50.000 | 0.00 | 0.00 | 44.04 | 2.74 |
1947 | 2111 | 9.392259 | GTTGTTTACTGGCTAGTATTTATCCTT | 57.608 | 33.333 | 11.07 | 0.00 | 39.08 | 3.36 |
1959 | 2123 | 9.817809 | CTAGTATTTATCCTTTCTGTGTGCTTA | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
1997 | 2181 | 9.686683 | AATTACCAAGCTATGTTTAGTCAGATT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2052 | 2236 | 5.416271 | AAGTATGTACACCAAGGAATCGT | 57.584 | 39.130 | 0.00 | 0.00 | 0.00 | 3.73 |
2183 | 2371 | 5.718649 | ACAGTATGCACGTATTTGACATC | 57.281 | 39.130 | 0.00 | 0.00 | 42.53 | 3.06 |
2215 | 2403 | 9.691362 | GCAGAGGACAAAAATATTTTGAGTTAA | 57.309 | 29.630 | 19.24 | 0.00 | 33.83 | 2.01 |
2230 | 2418 | 8.723942 | TTTTGAGTTAAAGAGATAGAGATGCC | 57.276 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
2251 | 2439 | 4.414852 | CCATATGGAAGCAAAACTGAACG | 58.585 | 43.478 | 17.49 | 0.00 | 37.39 | 3.95 |
2252 | 2440 | 2.422276 | ATGGAAGCAAAACTGAACGC | 57.578 | 45.000 | 0.00 | 0.00 | 0.00 | 4.84 |
2254 | 2442 | 2.566913 | TGGAAGCAAAACTGAACGCTA | 58.433 | 42.857 | 0.00 | 0.00 | 33.45 | 4.26 |
2255 | 2443 | 2.289547 | TGGAAGCAAAACTGAACGCTAC | 59.710 | 45.455 | 0.00 | 0.00 | 33.45 | 3.58 |
2256 | 2444 | 2.350484 | GGAAGCAAAACTGAACGCTACC | 60.350 | 50.000 | 0.00 | 0.00 | 33.45 | 3.18 |
2257 | 2445 | 2.256117 | AGCAAAACTGAACGCTACCT | 57.744 | 45.000 | 0.00 | 0.00 | 31.60 | 3.08 |
2259 | 2447 | 2.290641 | AGCAAAACTGAACGCTACCTTG | 59.709 | 45.455 | 0.00 | 0.00 | 31.60 | 3.61 |
2260 | 2448 | 2.032924 | GCAAAACTGAACGCTACCTTGT | 59.967 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2261 | 2449 | 3.848554 | GCAAAACTGAACGCTACCTTGTC | 60.849 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2262 | 2450 | 2.902705 | AACTGAACGCTACCTTGTCA | 57.097 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2263 | 2451 | 2.902705 | ACTGAACGCTACCTTGTCAA | 57.097 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2264 | 2452 | 3.402628 | ACTGAACGCTACCTTGTCAAT | 57.597 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2276 | 2464 | 6.712547 | GCTACCTTGTCAATAATATCAAGCCT | 59.287 | 38.462 | 0.00 | 0.00 | 36.82 | 4.58 |
2277 | 2465 | 6.949352 | ACCTTGTCAATAATATCAAGCCTG | 57.051 | 37.500 | 0.00 | 0.00 | 36.82 | 4.85 |
2299 | 2487 | 5.912892 | TGCGAGTTATGAAATCTGGATGTA | 58.087 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2316 | 2504 | 6.346096 | TGGATGTAAGCAGTATTACCAACTC | 58.654 | 40.000 | 0.00 | 0.00 | 35.23 | 3.01 |
2319 | 2507 | 8.148351 | GGATGTAAGCAGTATTACCAACTCATA | 58.852 | 37.037 | 0.00 | 0.00 | 35.23 | 2.15 |
2418 | 2614 | 8.575565 | TTGTTAGCTAACTTAGAATATGCTCG | 57.424 | 34.615 | 31.14 | 0.00 | 37.12 | 5.03 |
2423 | 2619 | 3.113260 | ACTTAGAATATGCTCGGTGGC | 57.887 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
2428 | 2624 | 2.036475 | AGAATATGCTCGGTGGCTACAG | 59.964 | 50.000 | 1.52 | 0.00 | 0.00 | 2.74 |
2456 | 2652 | 2.517166 | GGGCAAATCGGAGAGGCC | 60.517 | 66.667 | 0.00 | 0.00 | 46.79 | 5.19 |
2459 | 2693 | 0.965363 | GGCAAATCGGAGAGGCCAAA | 60.965 | 55.000 | 5.01 | 0.00 | 46.75 | 3.28 |
2494 | 2729 | 6.149308 | CACACTCCACATGATTAGTTTGCTAA | 59.851 | 38.462 | 0.00 | 0.00 | 40.98 | 3.09 |
2533 | 2768 | 5.348451 | GCCTTTAAACACACCAAATAGCATG | 59.652 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2613 | 2848 | 4.654262 | TGATACAAGGGAAGTGGGTATCTC | 59.346 | 45.833 | 0.00 | 0.00 | 40.42 | 2.75 |
2630 | 2865 | 6.375455 | GGGTATCTCAGACAAATTGTGTTCAT | 59.625 | 38.462 | 2.20 | 0.00 | 41.96 | 2.57 |
2645 | 2880 | 5.564768 | TGTGTTCATTGTTAGTTTGACACG | 58.435 | 37.500 | 0.00 | 0.00 | 30.72 | 4.49 |
2648 | 2883 | 5.351740 | TGTTCATTGTTAGTTTGACACGACA | 59.648 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2669 | 2904 | 6.127758 | CGACAAAGATACCCAAATGAAATCCA | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2673 | 2908 | 7.510549 | AAGATACCCAAATGAAATCCATACG | 57.489 | 36.000 | 0.00 | 0.00 | 34.45 | 3.06 |
2703 | 2938 | 2.158449 | GCGGTTCAGACTCTGTTGAATG | 59.842 | 50.000 | 5.94 | 0.00 | 35.91 | 2.67 |
2733 | 2968 | 8.928270 | ATTTGCAGAATTTTCAAATGCAAAAA | 57.072 | 23.077 | 23.32 | 11.19 | 42.62 | 1.94 |
2734 | 2969 | 7.737525 | TTGCAGAATTTTCAAATGCAAAAAC | 57.262 | 28.000 | 13.04 | 0.00 | 34.18 | 2.43 |
2735 | 2970 | 7.086230 | TGCAGAATTTTCAAATGCAAAAACT | 57.914 | 28.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2736 | 2971 | 8.206325 | TGCAGAATTTTCAAATGCAAAAACTA | 57.794 | 26.923 | 0.00 | 0.00 | 0.00 | 2.24 |
2737 | 2972 | 8.336806 | TGCAGAATTTTCAAATGCAAAAACTAG | 58.663 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2795 | 3033 | 7.117379 | GCGGGCTTTAATCGTAATAAATCTAGT | 59.883 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2820 | 3058 | 6.229936 | AGCAATGCAGATAAACAATTCCAT | 57.770 | 33.333 | 8.35 | 0.00 | 0.00 | 3.41 |
2841 | 3079 | 3.855858 | TCGCCCATTAAAAAGCCATTTC | 58.144 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
2869 | 3110 | 9.764363 | AGAAAGAAAAGGTCAATTTTATTGGTC | 57.236 | 29.630 | 0.00 | 0.00 | 34.70 | 4.02 |
3001 | 3244 | 8.539674 | GTCTGATTTTAAAATTTGACCACACAC | 58.460 | 33.333 | 22.82 | 9.41 | 31.18 | 3.82 |
3017 | 3261 | 6.696411 | ACCACACACTTCAAAAAGAAATCAA | 58.304 | 32.000 | 0.00 | 0.00 | 35.40 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.635229 | ATTGCCTGCTCGGAGCTACG | 62.635 | 60.000 | 28.42 | 13.63 | 42.97 | 3.51 |
1 | 2 | 0.878086 | GATTGCCTGCTCGGAGCTAC | 60.878 | 60.000 | 28.42 | 18.22 | 42.97 | 3.58 |
2 | 3 | 1.045350 | AGATTGCCTGCTCGGAGCTA | 61.045 | 55.000 | 28.42 | 15.06 | 42.97 | 3.32 |
3 | 4 | 1.908340 | AAGATTGCCTGCTCGGAGCT | 61.908 | 55.000 | 28.42 | 9.16 | 42.97 | 4.09 |
4 | 5 | 1.028868 | AAAGATTGCCTGCTCGGAGC | 61.029 | 55.000 | 22.78 | 22.78 | 42.82 | 4.70 |
5 | 6 | 1.457346 | AAAAGATTGCCTGCTCGGAG | 58.543 | 50.000 | 0.00 | 0.00 | 33.16 | 4.63 |
6 | 7 | 2.290008 | TGTAAAAGATTGCCTGCTCGGA | 60.290 | 45.455 | 0.00 | 0.00 | 33.16 | 4.55 |
7 | 8 | 2.083774 | TGTAAAAGATTGCCTGCTCGG | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
8 | 9 | 3.829886 | TTGTAAAAGATTGCCTGCTCG | 57.170 | 42.857 | 0.00 | 0.00 | 0.00 | 5.03 |
9 | 10 | 5.105063 | GGAATTGTAAAAGATTGCCTGCTC | 58.895 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
10 | 11 | 4.380867 | CGGAATTGTAAAAGATTGCCTGCT | 60.381 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
11 | 12 | 3.859386 | CGGAATTGTAAAAGATTGCCTGC | 59.141 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
12 | 13 | 4.858692 | CACGGAATTGTAAAAGATTGCCTG | 59.141 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
13 | 14 | 4.082245 | CCACGGAATTGTAAAAGATTGCCT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
14 | 15 | 4.173256 | CCACGGAATTGTAAAAGATTGCC | 58.827 | 43.478 | 0.00 | 0.00 | 0.00 | 4.52 |
15 | 16 | 4.621034 | CACCACGGAATTGTAAAAGATTGC | 59.379 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
16 | 17 | 6.007936 | TCACCACGGAATTGTAAAAGATTG | 57.992 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
17 | 18 | 6.642707 | TTCACCACGGAATTGTAAAAGATT | 57.357 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
18 | 19 | 6.834168 | ATTCACCACGGAATTGTAAAAGAT | 57.166 | 33.333 | 0.00 | 0.00 | 33.85 | 2.40 |
19 | 20 | 6.642707 | AATTCACCACGGAATTGTAAAAGA | 57.357 | 33.333 | 0.00 | 0.00 | 43.79 | 2.52 |
20 | 21 | 9.498307 | GTATAATTCACCACGGAATTGTAAAAG | 57.502 | 33.333 | 10.49 | 0.00 | 44.77 | 2.27 |
21 | 22 | 9.233649 | AGTATAATTCACCACGGAATTGTAAAA | 57.766 | 29.630 | 10.49 | 0.00 | 44.77 | 1.52 |
22 | 23 | 8.795842 | AGTATAATTCACCACGGAATTGTAAA | 57.204 | 30.769 | 10.49 | 0.00 | 44.77 | 2.01 |
23 | 24 | 9.887629 | TTAGTATAATTCACCACGGAATTGTAA | 57.112 | 29.630 | 10.49 | 2.69 | 44.77 | 2.41 |
25 | 26 | 8.974060 | ATTAGTATAATTCACCACGGAATTGT | 57.026 | 30.769 | 10.49 | 7.12 | 44.77 | 2.71 |
28 | 29 | 9.162764 | GCATATTAGTATAATTCACCACGGAAT | 57.837 | 33.333 | 0.00 | 0.00 | 39.11 | 3.01 |
29 | 30 | 8.151596 | TGCATATTAGTATAATTCACCACGGAA | 58.848 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
30 | 31 | 7.672240 | TGCATATTAGTATAATTCACCACGGA | 58.328 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
31 | 32 | 7.899178 | TGCATATTAGTATAATTCACCACGG | 57.101 | 36.000 | 0.00 | 0.00 | 0.00 | 4.94 |
32 | 33 | 8.769891 | TGTTGCATATTAGTATAATTCACCACG | 58.230 | 33.333 | 0.00 | 0.00 | 0.00 | 4.94 |
33 | 34 | 9.878599 | GTGTTGCATATTAGTATAATTCACCAC | 57.121 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
34 | 35 | 9.845740 | AGTGTTGCATATTAGTATAATTCACCA | 57.154 | 29.630 | 0.00 | 0.00 | 0.00 | 4.17 |
48 | 49 | 9.950680 | GCATGTACTTAATTAGTGTTGCATATT | 57.049 | 29.630 | 0.00 | 0.00 | 37.73 | 1.28 |
49 | 50 | 9.119418 | TGCATGTACTTAATTAGTGTTGCATAT | 57.881 | 29.630 | 11.26 | 0.00 | 39.87 | 1.78 |
50 | 51 | 8.499403 | TGCATGTACTTAATTAGTGTTGCATA | 57.501 | 30.769 | 11.26 | 0.00 | 39.87 | 3.14 |
51 | 52 | 7.389803 | TGCATGTACTTAATTAGTGTTGCAT | 57.610 | 32.000 | 11.26 | 8.29 | 39.87 | 3.96 |
52 | 53 | 6.809630 | TGCATGTACTTAATTAGTGTTGCA | 57.190 | 33.333 | 11.26 | 11.26 | 41.17 | 4.08 |
53 | 54 | 9.781834 | TTTATGCATGTACTTAATTAGTGTTGC | 57.218 | 29.630 | 10.16 | 7.99 | 37.73 | 4.17 |
77 | 78 | 9.984590 | AAGGGTACATGTACTTAATGGTATTTT | 57.015 | 29.630 | 29.89 | 9.60 | 36.36 | 1.82 |
78 | 79 | 9.984590 | AAAGGGTACATGTACTTAATGGTATTT | 57.015 | 29.630 | 29.89 | 16.08 | 36.36 | 1.40 |
79 | 80 | 9.623000 | GAAAGGGTACATGTACTTAATGGTATT | 57.377 | 33.333 | 29.89 | 14.71 | 36.36 | 1.89 |
80 | 81 | 7.929785 | CGAAAGGGTACATGTACTTAATGGTAT | 59.070 | 37.037 | 29.89 | 11.07 | 36.36 | 2.73 |
81 | 82 | 7.267128 | CGAAAGGGTACATGTACTTAATGGTA | 58.733 | 38.462 | 29.89 | 0.00 | 36.36 | 3.25 |
82 | 83 | 6.110707 | CGAAAGGGTACATGTACTTAATGGT | 58.889 | 40.000 | 29.89 | 12.91 | 36.36 | 3.55 |
83 | 84 | 5.007332 | GCGAAAGGGTACATGTACTTAATGG | 59.993 | 44.000 | 29.89 | 18.36 | 36.36 | 3.16 |
84 | 85 | 5.815740 | AGCGAAAGGGTACATGTACTTAATG | 59.184 | 40.000 | 29.89 | 18.39 | 36.36 | 1.90 |
85 | 86 | 5.985911 | AGCGAAAGGGTACATGTACTTAAT | 58.014 | 37.500 | 29.89 | 17.06 | 36.36 | 1.40 |
86 | 87 | 5.410355 | AGCGAAAGGGTACATGTACTTAA | 57.590 | 39.130 | 29.89 | 0.00 | 36.36 | 1.85 |
87 | 88 | 5.410355 | AAGCGAAAGGGTACATGTACTTA | 57.590 | 39.130 | 29.89 | 0.00 | 36.36 | 2.24 |
88 | 89 | 3.975168 | AGCGAAAGGGTACATGTACTT | 57.025 | 42.857 | 29.89 | 19.27 | 36.36 | 2.24 |
89 | 90 | 3.975168 | AAGCGAAAGGGTACATGTACT | 57.025 | 42.857 | 29.89 | 14.43 | 36.36 | 2.73 |
90 | 91 | 3.061697 | CGAAAGCGAAAGGGTACATGTAC | 59.938 | 47.826 | 25.00 | 25.00 | 40.82 | 2.90 |
91 | 92 | 3.056678 | TCGAAAGCGAAAGGGTACATGTA | 60.057 | 43.478 | 0.08 | 0.08 | 44.78 | 2.29 |
92 | 93 | 2.073816 | CGAAAGCGAAAGGGTACATGT | 58.926 | 47.619 | 2.69 | 2.69 | 40.82 | 3.21 |
93 | 94 | 2.343101 | TCGAAAGCGAAAGGGTACATG | 58.657 | 47.619 | 0.00 | 0.00 | 44.78 | 3.21 |
94 | 95 | 2.754946 | TCGAAAGCGAAAGGGTACAT | 57.245 | 45.000 | 0.00 | 0.00 | 44.78 | 2.29 |
112 | 113 | 4.584743 | ACCCTTGAATTTCCACTTCACTTC | 59.415 | 41.667 | 0.00 | 0.00 | 32.57 | 3.01 |
142 | 143 | 3.902150 | TCGTGTGAGCTAGACTTGAAAG | 58.098 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
239 | 275 | 7.841956 | AGGCATATTATGTAGTATCTGTGGTC | 58.158 | 38.462 | 5.60 | 0.00 | 0.00 | 4.02 |
249 | 285 | 8.807948 | AAGTGTCAAAAGGCATATTATGTAGT | 57.192 | 30.769 | 5.60 | 0.00 | 0.00 | 2.73 |
252 | 288 | 8.584157 | TCAAAAGTGTCAAAAGGCATATTATGT | 58.416 | 29.630 | 5.60 | 0.00 | 0.00 | 2.29 |
358 | 396 | 4.457496 | GCCTAGCTGCGCCACTGA | 62.457 | 66.667 | 4.18 | 0.00 | 0.00 | 3.41 |
376 | 414 | 5.966742 | AGATTTACAAGAAGGAAAGGCAC | 57.033 | 39.130 | 0.00 | 0.00 | 0.00 | 5.01 |
377 | 415 | 6.306987 | AGAAGATTTACAAGAAGGAAAGGCA | 58.693 | 36.000 | 0.00 | 0.00 | 0.00 | 4.75 |
380 | 418 | 7.361628 | GCTGGAGAAGATTTACAAGAAGGAAAG | 60.362 | 40.741 | 0.00 | 0.00 | 0.00 | 2.62 |
397 | 435 | 3.997021 | ACGTTATTTCTGTGCTGGAGAAG | 59.003 | 43.478 | 0.00 | 0.00 | 31.17 | 2.85 |
407 | 459 | 4.866508 | TGAGAGTGGACGTTATTTCTGT | 57.133 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
452 | 504 | 1.311651 | GCCCTCTTTTCAGAGCAGGC | 61.312 | 60.000 | 4.40 | 4.40 | 44.96 | 4.85 |
484 | 536 | 6.808008 | AAAGAATGATGTTACCACTGAGTG | 57.192 | 37.500 | 5.42 | 5.42 | 0.00 | 3.51 |
595 | 652 | 2.480419 | GTCGGGTCATGAGAAGTTTGTG | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
609 | 666 | 6.980051 | AAGAAAATAGTACATTGTCGGGTC | 57.020 | 37.500 | 0.00 | 0.00 | 0.00 | 4.46 |
793 | 851 | 1.290324 | CGATCAGCAGGGGATACGG | 59.710 | 63.158 | 0.00 | 0.00 | 37.60 | 4.02 |
1031 | 1115 | 1.590932 | GTGCTCTATGGCATCACTGG | 58.409 | 55.000 | 1.65 | 0.00 | 44.34 | 4.00 |
1067 | 1151 | 2.192624 | CCCAAAACGAGCAACAGTTTG | 58.807 | 47.619 | 0.00 | 0.00 | 40.07 | 2.93 |
1079 | 1163 | 0.824182 | TTAGCACCACCCCCAAAACG | 60.824 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
1111 | 1198 | 2.431954 | TCAGGGTTAGTACTCTCCCG | 57.568 | 55.000 | 21.89 | 17.96 | 44.13 | 5.14 |
1145 | 1232 | 0.390472 | CGTGCCTTTCTCACCCTCTC | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1254 | 1342 | 4.950050 | GCAGCTAGCTAAGATAAGACCAA | 58.050 | 43.478 | 18.86 | 0.00 | 41.15 | 3.67 |
1409 | 1497 | 1.750399 | ATGTGCCATGGGAAGCGAC | 60.750 | 57.895 | 15.13 | 0.00 | 0.00 | 5.19 |
1514 | 1632 | 9.357161 | GTAAGAGATATGAAGAAAGTAGGGAGA | 57.643 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
1587 | 1743 | 0.752054 | GACATCTCCAGGAGCCTCTG | 59.248 | 60.000 | 12.26 | 8.78 | 34.70 | 3.35 |
1605 | 1761 | 1.593787 | CAAGCTTCCTGGCTCTCGA | 59.406 | 57.895 | 0.00 | 0.00 | 42.24 | 4.04 |
1611 | 1767 | 3.376918 | GTGCCCAAGCTTCCTGGC | 61.377 | 66.667 | 19.53 | 19.53 | 44.27 | 4.85 |
1820 | 1976 | 3.368013 | CCCGCAACAAGATCAGTACTGTA | 60.368 | 47.826 | 21.99 | 9.79 | 0.00 | 2.74 |
1821 | 1977 | 2.612972 | CCCGCAACAAGATCAGTACTGT | 60.613 | 50.000 | 21.99 | 9.95 | 0.00 | 3.55 |
1822 | 1978 | 2.002586 | CCCGCAACAAGATCAGTACTG | 58.997 | 52.381 | 17.17 | 17.17 | 0.00 | 2.74 |
1823 | 1979 | 1.623811 | ACCCGCAACAAGATCAGTACT | 59.376 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
1824 | 1980 | 1.732259 | CACCCGCAACAAGATCAGTAC | 59.268 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
1947 | 2111 | 6.578944 | TCAAGAACTTACTAAGCACACAGAA | 58.421 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1959 | 2123 | 9.167311 | CATAGCTTGGTAATTCAAGAACTTACT | 57.833 | 33.333 | 10.29 | 1.20 | 44.98 | 2.24 |
1997 | 2181 | 6.003326 | TGTTATAGGACGATAATCCGGTACA | 58.997 | 40.000 | 0.00 | 0.00 | 44.22 | 2.90 |
2162 | 2350 | 5.731278 | CAGATGTCAAATACGTGCATACTG | 58.269 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2171 | 2359 | 1.393196 | TGCGTGCAGATGTCAAATACG | 59.607 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
2183 | 2371 | 0.662619 | TTTTTGTCCTCTGCGTGCAG | 59.337 | 50.000 | 15.59 | 15.59 | 44.86 | 4.41 |
2215 | 2403 | 6.352051 | GCTTCCATATGGCATCTCTATCTCTT | 60.352 | 42.308 | 17.58 | 0.00 | 34.44 | 2.85 |
2216 | 2404 | 5.129155 | GCTTCCATATGGCATCTCTATCTCT | 59.871 | 44.000 | 17.58 | 0.00 | 34.44 | 3.10 |
2217 | 2405 | 5.105023 | TGCTTCCATATGGCATCTCTATCTC | 60.105 | 44.000 | 17.58 | 0.00 | 34.44 | 2.75 |
2218 | 2406 | 4.781621 | TGCTTCCATATGGCATCTCTATCT | 59.218 | 41.667 | 17.58 | 0.00 | 34.44 | 1.98 |
2219 | 2407 | 5.095145 | TGCTTCCATATGGCATCTCTATC | 57.905 | 43.478 | 17.58 | 0.00 | 34.44 | 2.08 |
2230 | 2418 | 3.853671 | GCGTTCAGTTTTGCTTCCATATG | 59.146 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
2251 | 2439 | 6.712547 | AGGCTTGATATTATTGACAAGGTAGC | 59.287 | 38.462 | 0.00 | 0.00 | 39.70 | 3.58 |
2252 | 2440 | 7.308229 | GCAGGCTTGATATTATTGACAAGGTAG | 60.308 | 40.741 | 0.00 | 0.00 | 39.70 | 3.18 |
2254 | 2442 | 5.300286 | GCAGGCTTGATATTATTGACAAGGT | 59.700 | 40.000 | 0.00 | 0.00 | 39.70 | 3.50 |
2255 | 2443 | 5.561532 | CGCAGGCTTGATATTATTGACAAGG | 60.562 | 44.000 | 0.00 | 0.00 | 39.70 | 3.61 |
2256 | 2444 | 5.237127 | TCGCAGGCTTGATATTATTGACAAG | 59.763 | 40.000 | 0.00 | 0.00 | 41.46 | 3.16 |
2257 | 2445 | 5.122519 | TCGCAGGCTTGATATTATTGACAA | 58.877 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2259 | 2447 | 4.752101 | ACTCGCAGGCTTGATATTATTGAC | 59.248 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2260 | 2448 | 4.960938 | ACTCGCAGGCTTGATATTATTGA | 58.039 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2261 | 2449 | 5.679734 | AACTCGCAGGCTTGATATTATTG | 57.320 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
2262 | 2450 | 7.161404 | TCATAACTCGCAGGCTTGATATTATT | 58.839 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2263 | 2451 | 6.701340 | TCATAACTCGCAGGCTTGATATTAT | 58.299 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2264 | 2452 | 6.096673 | TCATAACTCGCAGGCTTGATATTA | 57.903 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
2276 | 2464 | 4.769688 | ACATCCAGATTTCATAACTCGCA | 58.230 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
2277 | 2465 | 6.564873 | GCTTACATCCAGATTTCATAACTCGC | 60.565 | 42.308 | 0.00 | 0.00 | 0.00 | 5.03 |
2299 | 2487 | 8.023021 | TCTGATATGAGTTGGTAATACTGCTT | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
2316 | 2504 | 9.674824 | GCAAATTGACCTAGAAAATCTGATATG | 57.325 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
2319 | 2507 | 7.613022 | TCTGCAAATTGACCTAGAAAATCTGAT | 59.387 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2332 | 2520 | 3.244976 | CGGTTTCATCTGCAAATTGACC | 58.755 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2418 | 2614 | 2.691409 | TTAGCATGTCTGTAGCCACC | 57.309 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2423 | 2619 | 3.198409 | TGCCCATTAGCATGTCTGTAG | 57.802 | 47.619 | 0.00 | 0.00 | 38.00 | 2.74 |
2428 | 2624 | 2.287788 | CCGATTTGCCCATTAGCATGTC | 60.288 | 50.000 | 0.00 | 0.00 | 43.64 | 3.06 |
2459 | 2693 | 7.765695 | ATCATGTGGAGTGTGTTAGAATTTT | 57.234 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2465 | 2699 | 7.521529 | CAAACTAATCATGTGGAGTGTGTTAG | 58.478 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
2494 | 2729 | 7.540745 | GTGTTTAAAGGCATGTAAATTCATCGT | 59.459 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
2551 | 2786 | 8.057623 | AGTTCCAATATCAATCCAAGAAGATGT | 58.942 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2552 | 2787 | 8.350722 | CAGTTCCAATATCAATCCAAGAAGATG | 58.649 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2613 | 2848 | 8.633075 | AACTAACAATGAACACAATTTGTCTG | 57.367 | 30.769 | 0.00 | 0.00 | 37.51 | 3.51 |
2630 | 2865 | 6.671614 | ATCTTTGTCGTGTCAAACTAACAA | 57.328 | 33.333 | 0.00 | 0.00 | 34.30 | 2.83 |
2645 | 2880 | 7.169158 | TGGATTTCATTTGGGTATCTTTGTC | 57.831 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2648 | 2883 | 7.777910 | TCGTATGGATTTCATTTGGGTATCTTT | 59.222 | 33.333 | 0.00 | 0.00 | 37.30 | 2.52 |
2669 | 2904 | 2.355132 | CTGAACCGCTGTAGAGTCGTAT | 59.645 | 50.000 | 3.77 | 0.00 | 0.00 | 3.06 |
2673 | 2908 | 1.813786 | AGTCTGAACCGCTGTAGAGTC | 59.186 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2731 | 2966 | 5.805728 | ACCTTATGTGTTGCTAGCTAGTTT | 58.194 | 37.500 | 21.62 | 0.00 | 0.00 | 2.66 |
2732 | 2967 | 5.422214 | ACCTTATGTGTTGCTAGCTAGTT | 57.578 | 39.130 | 21.62 | 0.00 | 0.00 | 2.24 |
2733 | 2968 | 5.422214 | AACCTTATGTGTTGCTAGCTAGT | 57.578 | 39.130 | 21.62 | 2.93 | 0.00 | 2.57 |
2734 | 2969 | 5.643777 | ACAAACCTTATGTGTTGCTAGCTAG | 59.356 | 40.000 | 16.84 | 16.84 | 0.00 | 3.42 |
2735 | 2970 | 5.556915 | ACAAACCTTATGTGTTGCTAGCTA | 58.443 | 37.500 | 17.23 | 5.31 | 0.00 | 3.32 |
2736 | 2971 | 4.398319 | ACAAACCTTATGTGTTGCTAGCT | 58.602 | 39.130 | 17.23 | 0.00 | 0.00 | 3.32 |
2737 | 2972 | 4.215399 | TGACAAACCTTATGTGTTGCTAGC | 59.785 | 41.667 | 8.10 | 8.10 | 0.00 | 3.42 |
2795 | 3033 | 7.167924 | TGGAATTGTTTATCTGCATTGCTAA | 57.832 | 32.000 | 10.49 | 0.00 | 0.00 | 3.09 |
2820 | 3058 | 3.513515 | AGAAATGGCTTTTTAATGGGCGA | 59.486 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
2977 | 3220 | 8.647143 | AGTGTGTGGTCAAATTTTAAAATCAG | 57.353 | 30.769 | 13.68 | 9.48 | 0.00 | 2.90 |
2989 | 3232 | 5.713792 | TCTTTTTGAAGTGTGTGGTCAAA | 57.286 | 34.783 | 0.00 | 0.00 | 39.00 | 2.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.