Multiple sequence alignment - TraesCS7A01G411200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G411200 chr7A 100.000 3401 0 0 1 3401 602049365 602052765 0.000000e+00 6281.0
1 TraesCS7A01G411200 chr7A 93.291 477 28 2 2927 3401 514899378 514898904 0.000000e+00 701.0
2 TraesCS7A01G411200 chr7A 90.801 337 26 4 2588 2922 514899626 514899293 2.410000e-121 446.0
3 TraesCS7A01G411200 chr7A 93.127 291 19 1 252 541 48947400 48947110 3.140000e-115 425.0
4 TraesCS7A01G411200 chr7A 88.525 61 5 2 2581 2639 12950631 12950571 4.710000e-09 73.1
5 TraesCS7A01G411200 chr7B 94.830 1973 78 5 573 2529 555429154 555431118 0.000000e+00 3057.0
6 TraesCS7A01G411200 chr7B 80.167 837 119 32 2598 3401 43869842 43870664 1.760000e-162 582.0
7 TraesCS7A01G411200 chr7B 88.710 434 42 2 2968 3401 272712078 272711652 1.080000e-144 523.0
8 TraesCS7A01G411200 chr7B 95.312 64 3 0 2522 2585 555498974 555499037 6.000000e-18 102.0
9 TraesCS7A01G411200 chr7D 95.575 1853 68 7 573 2421 521731922 521733764 0.000000e+00 2955.0
10 TraesCS7A01G411200 chr7D 76.744 387 58 19 2605 2963 162146940 162147322 1.610000e-43 187.0
11 TraesCS7A01G411200 chr7D 82.126 207 20 10 47 252 454164474 454164664 9.770000e-36 161.0
12 TraesCS7A01G411200 chr7D 86.813 91 8 2 2833 2919 162147234 162147324 7.770000e-17 99.0
13 TraesCS7A01G411200 chr7D 97.674 43 1 0 534 576 59173469 59173511 1.310000e-09 75.0
14 TraesCS7A01G411200 chr7D 95.349 43 2 0 534 576 400416847 400416889 6.090000e-08 69.4
15 TraesCS7A01G411200 chrUn 82.217 821 98 25 2599 3401 83927891 83927101 0.000000e+00 664.0
16 TraesCS7A01G411200 chrUn 90.310 258 19 4 1 255 83367356 83367102 1.960000e-87 333.0
17 TraesCS7A01G411200 chr6D 95.887 389 14 2 3001 3389 362781000 362781386 2.230000e-176 628.0
18 TraesCS7A01G411200 chr6D 88.791 339 22 6 2599 2932 362780220 362780547 5.290000e-108 401.0
19 TraesCS7A01G411200 chr6D 95.349 43 2 0 534 576 156432652 156432610 6.090000e-08 69.4
20 TraesCS7A01G411200 chr6D 95.000 40 2 0 534 573 97918346 97918385 2.830000e-06 63.9
21 TraesCS7A01G411200 chr2B 84.938 644 69 11 2758 3401 753915947 753915332 8.010000e-176 627.0
22 TraesCS7A01G411200 chr2B 88.347 369 37 3 3033 3401 772713983 772714345 4.030000e-119 438.0
23 TraesCS7A01G411200 chr2B 91.946 298 21 3 254 550 463356554 463356259 6.790000e-112 414.0
24 TraesCS7A01G411200 chr2A 80.380 841 112 35 2599 3401 197516677 197517502 1.050000e-164 590.0
25 TraesCS7A01G411200 chr2A 91.597 119 7 3 2598 2715 726018890 726019006 9.770000e-36 161.0
26 TraesCS7A01G411200 chr6A 87.927 439 45 5 2965 3401 574254253 574254685 8.420000e-141 510.0
27 TraesCS7A01G411200 chr5A 94.014 284 16 1 254 537 637058119 637058401 2.420000e-116 429.0
28 TraesCS7A01G411200 chr5A 88.716 257 25 4 1 255 380793834 380794088 9.160000e-81 311.0
29 TraesCS7A01G411200 chr3B 93.972 282 16 1 254 535 17350291 17350571 3.140000e-115 425.0
30 TraesCS7A01G411200 chr3B 92.759 290 19 2 254 542 58625646 58625934 5.250000e-113 418.0
31 TraesCS7A01G411200 chr3B 84.319 389 55 5 2594 2979 827857621 827857236 3.200000e-100 375.0
32 TraesCS7A01G411200 chr5B 92.808 292 20 1 252 542 439263993 439263702 4.060000e-114 422.0
33 TraesCS7A01G411200 chr5B 91.667 300 23 2 252 550 671039801 671039503 6.790000e-112 414.0
34 TraesCS7A01G411200 chr5B 90.833 120 9 2 2599 2717 203409744 203409626 3.510000e-35 159.0
35 TraesCS7A01G411200 chr5B 90.196 51 5 0 534 584 72094089 72094039 2.190000e-07 67.6
36 TraesCS7A01G411200 chr1A 92.568 296 19 3 248 542 41902548 41902255 4.060000e-114 422.0
37 TraesCS7A01G411200 chr1B 91.946 298 20 4 253 548 638037392 638037097 6.790000e-112 414.0
38 TraesCS7A01G411200 chr1B 86.575 365 42 6 2620 2979 130548992 130549354 2.460000e-106 396.0
39 TraesCS7A01G411200 chr1B 89.600 125 12 1 2605 2728 4623630 4623754 1.260000e-34 158.0
40 TraesCS7A01G411200 chr1B 78.367 245 31 11 2 246 168966435 168966657 4.580000e-29 139.0
41 TraesCS7A01G411200 chr1B 78.367 245 32 10 2 246 168984752 168984975 4.580000e-29 139.0
42 TraesCS7A01G411200 chr1B 95.238 42 2 0 534 575 487417180 487417139 2.190000e-07 67.6
43 TraesCS7A01G411200 chr3A 87.739 261 24 6 1 255 115606509 115606251 7.130000e-77 298.0
44 TraesCS7A01G411200 chr3A 87.547 265 21 7 1 255 115834633 115834371 2.570000e-76 296.0
45 TraesCS7A01G411200 chr6B 90.741 54 4 1 534 586 10175552 10175499 1.690000e-08 71.3
46 TraesCS7A01G411200 chr1D 95.349 43 2 0 534 576 467315188 467315230 6.090000e-08 69.4
47 TraesCS7A01G411200 chr1D 93.023 43 3 0 534 576 114686343 114686301 2.830000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G411200 chr7A 602049365 602052765 3400 False 6281.0 6281 100.000 1 3401 1 chr7A.!!$F1 3400
1 TraesCS7A01G411200 chr7A 514898904 514899626 722 True 573.5 701 92.046 2588 3401 2 chr7A.!!$R3 813
2 TraesCS7A01G411200 chr7B 555429154 555431118 1964 False 3057.0 3057 94.830 573 2529 1 chr7B.!!$F2 1956
3 TraesCS7A01G411200 chr7B 43869842 43870664 822 False 582.0 582 80.167 2598 3401 1 chr7B.!!$F1 803
4 TraesCS7A01G411200 chr7D 521731922 521733764 1842 False 2955.0 2955 95.575 573 2421 1 chr7D.!!$F4 1848
5 TraesCS7A01G411200 chrUn 83927101 83927891 790 True 664.0 664 82.217 2599 3401 1 chrUn.!!$R2 802
6 TraesCS7A01G411200 chr6D 362780220 362781386 1166 False 514.5 628 92.339 2599 3389 2 chr6D.!!$F2 790
7 TraesCS7A01G411200 chr2B 753915332 753915947 615 True 627.0 627 84.938 2758 3401 1 chr2B.!!$R2 643
8 TraesCS7A01G411200 chr2A 197516677 197517502 825 False 590.0 590 80.380 2599 3401 1 chr2A.!!$F1 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.665369 GACTTGGCAATGTGCTGCAC 60.665 55.0 25.15 25.15 44.28 4.57 F
972 974 0.723414 CGTGTGATCAAGCTGCGATT 59.277 50.0 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1872 4.430765 GTCCGCCGTGACGTCCAT 62.431 66.667 14.12 0.00 0.00 3.41 R
2948 3019 0.179936 CAGCAAAGGGAGGCTCTAGG 59.820 60.000 15.23 1.44 38.56 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.515602 AAGAGAAGGACTTGGCAATGT 57.484 42.857 0.00 0.77 0.00 2.71
22 23 2.787994 AGAGAAGGACTTGGCAATGTG 58.212 47.619 0.00 0.00 0.00 3.21
23 24 1.200948 GAGAAGGACTTGGCAATGTGC 59.799 52.381 0.00 6.79 44.08 4.57
24 25 1.202976 AGAAGGACTTGGCAATGTGCT 60.203 47.619 14.60 14.60 44.28 4.40
25 26 0.963962 AAGGACTTGGCAATGTGCTG 59.036 50.000 18.80 3.13 44.28 4.41
26 27 1.080298 GGACTTGGCAATGTGCTGC 60.080 57.895 0.00 0.00 44.28 5.25
27 28 1.661480 GACTTGGCAATGTGCTGCA 59.339 52.632 0.00 0.00 44.28 4.41
28 29 0.665369 GACTTGGCAATGTGCTGCAC 60.665 55.000 25.15 25.15 44.28 4.57
29 30 1.111116 ACTTGGCAATGTGCTGCACT 61.111 50.000 30.43 15.25 44.28 4.40
30 31 0.883153 CTTGGCAATGTGCTGCACTA 59.117 50.000 30.43 18.50 44.28 2.74
31 32 0.883153 TTGGCAATGTGCTGCACTAG 59.117 50.000 30.43 20.85 44.28 2.57
42 43 3.740044 GCTGCACTAGCGACATAAAAA 57.260 42.857 0.00 0.00 46.23 1.94
43 44 4.278678 GCTGCACTAGCGACATAAAAAT 57.721 40.909 0.00 0.00 46.23 1.82
44 45 4.031028 GCTGCACTAGCGACATAAAAATG 58.969 43.478 0.00 0.00 46.23 2.32
45 46 4.014847 TGCACTAGCGACATAAAAATGC 57.985 40.909 0.00 0.00 46.23 3.56
46 47 3.689161 TGCACTAGCGACATAAAAATGCT 59.311 39.130 0.00 0.00 46.23 3.79
47 48 4.155826 TGCACTAGCGACATAAAAATGCTT 59.844 37.500 0.00 0.00 46.23 3.91
48 49 5.095490 GCACTAGCGACATAAAAATGCTTT 58.905 37.500 0.00 0.00 37.12 3.51
49 50 5.572896 GCACTAGCGACATAAAAATGCTTTT 59.427 36.000 0.00 0.00 38.34 2.27
50 51 6.089417 GCACTAGCGACATAAAAATGCTTTTT 59.911 34.615 4.57 4.57 44.43 1.94
96 97 3.577649 TTTTTGCGGTGTGAAGAACAA 57.422 38.095 0.00 0.00 41.57 2.83
97 98 3.577649 TTTTGCGGTGTGAAGAACAAA 57.422 38.095 0.00 0.00 41.57 2.83
98 99 2.553079 TTGCGGTGTGAAGAACAAAC 57.447 45.000 0.00 0.00 41.57 2.93
99 100 1.454201 TGCGGTGTGAAGAACAAACA 58.546 45.000 0.00 0.00 41.57 2.83
100 101 1.813178 TGCGGTGTGAAGAACAAACAA 59.187 42.857 0.00 0.00 41.57 2.83
101 102 2.229062 TGCGGTGTGAAGAACAAACAAA 59.771 40.909 0.00 0.00 41.57 2.83
102 103 2.851824 GCGGTGTGAAGAACAAACAAAG 59.148 45.455 0.00 0.00 41.57 2.77
103 104 3.426963 GCGGTGTGAAGAACAAACAAAGA 60.427 43.478 0.00 0.00 41.57 2.52
104 105 4.095610 CGGTGTGAAGAACAAACAAAGAC 58.904 43.478 0.00 0.00 41.57 3.01
105 106 4.378978 CGGTGTGAAGAACAAACAAAGACA 60.379 41.667 0.00 0.00 41.57 3.41
106 107 5.465935 GGTGTGAAGAACAAACAAAGACAA 58.534 37.500 0.00 0.00 41.57 3.18
107 108 5.923684 GGTGTGAAGAACAAACAAAGACAAA 59.076 36.000 0.00 0.00 41.57 2.83
108 109 6.422400 GGTGTGAAGAACAAACAAAGACAAAA 59.578 34.615 0.00 0.00 41.57 2.44
109 110 7.359181 GGTGTGAAGAACAAACAAAGACAAAAG 60.359 37.037 0.00 0.00 41.57 2.27
110 111 7.381139 GTGTGAAGAACAAACAAAGACAAAAGA 59.619 33.333 0.00 0.00 41.57 2.52
111 112 7.381139 TGTGAAGAACAAACAAAGACAAAAGAC 59.619 33.333 0.00 0.00 35.24 3.01
112 113 7.381139 GTGAAGAACAAACAAAGACAAAAGACA 59.619 33.333 0.00 0.00 0.00 3.41
113 114 7.923344 TGAAGAACAAACAAAGACAAAAGACAA 59.077 29.630 0.00 0.00 0.00 3.18
114 115 8.655651 AAGAACAAACAAAGACAAAAGACAAA 57.344 26.923 0.00 0.00 0.00 2.83
115 116 8.298030 AGAACAAACAAAGACAAAAGACAAAG 57.702 30.769 0.00 0.00 0.00 2.77
116 117 8.141268 AGAACAAACAAAGACAAAAGACAAAGA 58.859 29.630 0.00 0.00 0.00 2.52
117 118 8.655651 AACAAACAAAGACAAAAGACAAAGAA 57.344 26.923 0.00 0.00 0.00 2.52
118 119 8.655651 ACAAACAAAGACAAAAGACAAAGAAA 57.344 26.923 0.00 0.00 0.00 2.52
119 120 8.547894 ACAAACAAAGACAAAAGACAAAGAAAC 58.452 29.630 0.00 0.00 0.00 2.78
120 121 8.547069 CAAACAAAGACAAAAGACAAAGAAACA 58.453 29.630 0.00 0.00 0.00 2.83
121 122 8.655651 AACAAAGACAAAAGACAAAGAAACAA 57.344 26.923 0.00 0.00 0.00 2.83
122 123 8.655651 ACAAAGACAAAAGACAAAGAAACAAA 57.344 26.923 0.00 0.00 0.00 2.83
123 124 8.547894 ACAAAGACAAAAGACAAAGAAACAAAC 58.452 29.630 0.00 0.00 0.00 2.93
124 125 8.547069 CAAAGACAAAAGACAAAGAAACAAACA 58.453 29.630 0.00 0.00 0.00 2.83
125 126 8.655651 AAGACAAAAGACAAAGAAACAAACAA 57.344 26.923 0.00 0.00 0.00 2.83
126 127 8.072238 AGACAAAAGACAAAGAAACAAACAAC 57.928 30.769 0.00 0.00 0.00 3.32
127 128 7.170828 AGACAAAAGACAAAGAAACAAACAACC 59.829 33.333 0.00 0.00 0.00 3.77
128 129 6.203915 ACAAAAGACAAAGAAACAAACAACCC 59.796 34.615 0.00 0.00 0.00 4.11
129 130 5.476091 AAGACAAAGAAACAAACAACCCA 57.524 34.783 0.00 0.00 0.00 4.51
130 131 5.476091 AGACAAAGAAACAAACAACCCAA 57.524 34.783 0.00 0.00 0.00 4.12
131 132 6.048732 AGACAAAGAAACAAACAACCCAAT 57.951 33.333 0.00 0.00 0.00 3.16
132 133 6.106003 AGACAAAGAAACAAACAACCCAATC 58.894 36.000 0.00 0.00 0.00 2.67
133 134 5.182487 ACAAAGAAACAAACAACCCAATCC 58.818 37.500 0.00 0.00 0.00 3.01
134 135 5.181748 CAAAGAAACAAACAACCCAATCCA 58.818 37.500 0.00 0.00 0.00 3.41
135 136 5.428184 AAGAAACAAACAACCCAATCCAA 57.572 34.783 0.00 0.00 0.00 3.53
136 137 5.428184 AGAAACAAACAACCCAATCCAAA 57.572 34.783 0.00 0.00 0.00 3.28
137 138 6.000246 AGAAACAAACAACCCAATCCAAAT 58.000 33.333 0.00 0.00 0.00 2.32
138 139 7.130681 AGAAACAAACAACCCAATCCAAATA 57.869 32.000 0.00 0.00 0.00 1.40
139 140 7.569240 AGAAACAAACAACCCAATCCAAATAA 58.431 30.769 0.00 0.00 0.00 1.40
140 141 8.049721 AGAAACAAACAACCCAATCCAAATAAA 58.950 29.630 0.00 0.00 0.00 1.40
141 142 8.759481 AAACAAACAACCCAATCCAAATAAAT 57.241 26.923 0.00 0.00 0.00 1.40
142 143 9.853177 AAACAAACAACCCAATCCAAATAAATA 57.147 25.926 0.00 0.00 0.00 1.40
143 144 9.853177 AACAAACAACCCAATCCAAATAAATAA 57.147 25.926 0.00 0.00 0.00 1.40
144 145 9.853177 ACAAACAACCCAATCCAAATAAATAAA 57.147 25.926 0.00 0.00 0.00 1.40
167 168 8.926715 AAATAGAACAAAACCAACAGAGAAAC 57.073 30.769 0.00 0.00 0.00 2.78
168 169 5.975693 AGAACAAAACCAACAGAGAAACA 57.024 34.783 0.00 0.00 0.00 2.83
169 170 6.339587 AGAACAAAACCAACAGAGAAACAA 57.660 33.333 0.00 0.00 0.00 2.83
170 171 6.754193 AGAACAAAACCAACAGAGAAACAAA 58.246 32.000 0.00 0.00 0.00 2.83
171 172 7.213678 AGAACAAAACCAACAGAGAAACAAAA 58.786 30.769 0.00 0.00 0.00 2.44
172 173 7.713073 AGAACAAAACCAACAGAGAAACAAAAA 59.287 29.630 0.00 0.00 0.00 1.94
173 174 7.977789 ACAAAACCAACAGAGAAACAAAAAT 57.022 28.000 0.00 0.00 0.00 1.82
174 175 7.805700 ACAAAACCAACAGAGAAACAAAAATG 58.194 30.769 0.00 0.00 0.00 2.32
175 176 7.659390 ACAAAACCAACAGAGAAACAAAAATGA 59.341 29.630 0.00 0.00 0.00 2.57
176 177 7.832503 AAACCAACAGAGAAACAAAAATGAG 57.167 32.000 0.00 0.00 0.00 2.90
177 178 5.351458 ACCAACAGAGAAACAAAAATGAGC 58.649 37.500 0.00 0.00 0.00 4.26
178 179 4.746611 CCAACAGAGAAACAAAAATGAGCC 59.253 41.667 0.00 0.00 0.00 4.70
179 180 5.350633 CAACAGAGAAACAAAAATGAGCCA 58.649 37.500 0.00 0.00 0.00 4.75
180 181 5.596836 ACAGAGAAACAAAAATGAGCCAA 57.403 34.783 0.00 0.00 0.00 4.52
181 182 5.351458 ACAGAGAAACAAAAATGAGCCAAC 58.649 37.500 0.00 0.00 0.00 3.77
182 183 5.127682 ACAGAGAAACAAAAATGAGCCAACT 59.872 36.000 0.00 0.00 0.00 3.16
183 184 6.321181 ACAGAGAAACAAAAATGAGCCAACTA 59.679 34.615 0.00 0.00 0.00 2.24
184 185 7.147915 ACAGAGAAACAAAAATGAGCCAACTAA 60.148 33.333 0.00 0.00 0.00 2.24
185 186 7.380602 CAGAGAAACAAAAATGAGCCAACTAAG 59.619 37.037 0.00 0.00 0.00 2.18
186 187 7.285401 AGAGAAACAAAAATGAGCCAACTAAGA 59.715 33.333 0.00 0.00 0.00 2.10
187 188 7.781056 AGAAACAAAAATGAGCCAACTAAGAA 58.219 30.769 0.00 0.00 0.00 2.52
188 189 8.424133 AGAAACAAAAATGAGCCAACTAAGAAT 58.576 29.630 0.00 0.00 0.00 2.40
189 190 9.691362 GAAACAAAAATGAGCCAACTAAGAATA 57.309 29.630 0.00 0.00 0.00 1.75
194 195 9.489084 AAAAATGAGCCAACTAAGAATAAAACC 57.511 29.630 0.00 0.00 0.00 3.27
195 196 6.775594 ATGAGCCAACTAAGAATAAAACCC 57.224 37.500 0.00 0.00 0.00 4.11
196 197 5.636123 TGAGCCAACTAAGAATAAAACCCA 58.364 37.500 0.00 0.00 0.00 4.51
197 198 5.710099 TGAGCCAACTAAGAATAAAACCCAG 59.290 40.000 0.00 0.00 0.00 4.45
198 199 4.462834 AGCCAACTAAGAATAAAACCCAGC 59.537 41.667 0.00 0.00 0.00 4.85
199 200 4.219725 GCCAACTAAGAATAAAACCCAGCA 59.780 41.667 0.00 0.00 0.00 4.41
200 201 5.622233 GCCAACTAAGAATAAAACCCAGCAG 60.622 44.000 0.00 0.00 0.00 4.24
201 202 5.402398 CAACTAAGAATAAAACCCAGCAGC 58.598 41.667 0.00 0.00 0.00 5.25
202 203 4.923415 ACTAAGAATAAAACCCAGCAGCT 58.077 39.130 0.00 0.00 0.00 4.24
203 204 6.062258 ACTAAGAATAAAACCCAGCAGCTA 57.938 37.500 0.00 0.00 0.00 3.32
204 205 6.663734 ACTAAGAATAAAACCCAGCAGCTAT 58.336 36.000 0.00 0.00 0.00 2.97
205 206 7.119387 ACTAAGAATAAAACCCAGCAGCTATT 58.881 34.615 0.00 0.00 0.00 1.73
206 207 5.841957 AGAATAAAACCCAGCAGCTATTG 57.158 39.130 0.00 0.00 0.00 1.90
207 208 5.509498 AGAATAAAACCCAGCAGCTATTGA 58.491 37.500 0.00 0.00 0.00 2.57
208 209 6.131961 AGAATAAAACCCAGCAGCTATTGAT 58.868 36.000 0.00 0.00 0.00 2.57
209 210 6.608808 AGAATAAAACCCAGCAGCTATTGATT 59.391 34.615 0.00 0.00 0.00 2.57
210 211 7.779798 AGAATAAAACCCAGCAGCTATTGATTA 59.220 33.333 0.00 0.00 0.00 1.75
211 212 7.896383 ATAAAACCCAGCAGCTATTGATTAA 57.104 32.000 0.00 0.00 0.00 1.40
212 213 6.603940 AAAACCCAGCAGCTATTGATTAAA 57.396 33.333 0.00 0.00 0.00 1.52
213 214 5.582689 AACCCAGCAGCTATTGATTAAAC 57.417 39.130 0.00 0.00 0.00 2.01
214 215 4.599041 ACCCAGCAGCTATTGATTAAACA 58.401 39.130 0.00 0.00 0.00 2.83
215 216 5.016173 ACCCAGCAGCTATTGATTAAACAA 58.984 37.500 0.00 0.21 0.00 2.83
216 217 5.480073 ACCCAGCAGCTATTGATTAAACAAA 59.520 36.000 2.00 0.00 33.44 2.83
217 218 5.807011 CCCAGCAGCTATTGATTAAACAAAC 59.193 40.000 2.00 0.00 33.44 2.93
218 219 6.389091 CCAGCAGCTATTGATTAAACAAACA 58.611 36.000 2.00 0.00 33.44 2.83
219 220 6.529125 CCAGCAGCTATTGATTAAACAAACAG 59.471 38.462 2.00 4.57 33.44 3.16
220 221 6.529125 CAGCAGCTATTGATTAAACAAACAGG 59.471 38.462 2.00 0.00 33.44 4.00
221 222 5.289434 GCAGCTATTGATTAAACAAACAGGC 59.711 40.000 2.00 5.13 33.44 4.85
222 223 5.807011 CAGCTATTGATTAAACAAACAGGCC 59.193 40.000 2.00 0.00 33.44 5.19
223 224 5.716703 AGCTATTGATTAAACAAACAGGCCT 59.283 36.000 0.00 0.00 33.44 5.19
224 225 6.889722 AGCTATTGATTAAACAAACAGGCCTA 59.110 34.615 3.98 0.00 33.44 3.93
225 226 7.396055 AGCTATTGATTAAACAAACAGGCCTAA 59.604 33.333 3.98 0.00 33.44 2.69
226 227 8.197439 GCTATTGATTAAACAAACAGGCCTAAT 58.803 33.333 3.98 0.00 33.44 1.73
227 228 9.736023 CTATTGATTAAACAAACAGGCCTAATC 57.264 33.333 3.98 9.37 33.44 1.75
228 229 7.775053 TTGATTAAACAAACAGGCCTAATCT 57.225 32.000 3.98 0.00 30.55 2.40
229 230 7.156876 TGATTAAACAAACAGGCCTAATCTG 57.843 36.000 3.98 3.07 38.16 2.90
230 231 6.719370 TGATTAAACAAACAGGCCTAATCTGT 59.281 34.615 3.98 3.80 46.22 3.41
231 232 6.569179 TTAAACAAACAGGCCTAATCTGTC 57.431 37.500 3.98 0.00 43.82 3.51
232 233 4.373156 AACAAACAGGCCTAATCTGTCT 57.627 40.909 3.98 0.00 43.82 3.41
233 234 4.373156 ACAAACAGGCCTAATCTGTCTT 57.627 40.909 3.98 0.00 43.82 3.01
234 235 5.499004 ACAAACAGGCCTAATCTGTCTTA 57.501 39.130 3.98 0.00 43.82 2.10
235 236 5.491982 ACAAACAGGCCTAATCTGTCTTAG 58.508 41.667 3.98 0.00 43.82 2.18
237 238 3.725634 ACAGGCCTAATCTGTCTTAGGT 58.274 45.455 3.98 0.00 46.42 3.08
238 239 3.452627 ACAGGCCTAATCTGTCTTAGGTG 59.547 47.826 3.98 11.15 46.42 4.00
239 240 3.706594 CAGGCCTAATCTGTCTTAGGTGA 59.293 47.826 3.98 0.00 46.42 4.02
240 241 3.707102 AGGCCTAATCTGTCTTAGGTGAC 59.293 47.826 1.29 0.00 46.42 3.67
241 242 3.451178 GGCCTAATCTGTCTTAGGTGACA 59.549 47.826 15.31 0.00 46.42 3.58
242 243 4.101741 GGCCTAATCTGTCTTAGGTGACAT 59.898 45.833 15.31 0.00 46.42 3.06
243 244 5.293560 GCCTAATCTGTCTTAGGTGACATC 58.706 45.833 15.31 0.00 46.42 3.06
244 245 5.163405 GCCTAATCTGTCTTAGGTGACATCA 60.163 44.000 15.31 0.00 46.42 3.07
245 246 6.511416 CCTAATCTGTCTTAGGTGACATCAG 58.489 44.000 0.00 0.00 44.66 2.90
246 247 6.097554 CCTAATCTGTCTTAGGTGACATCAGT 59.902 42.308 0.00 0.00 44.66 3.41
247 248 5.590530 ATCTGTCTTAGGTGACATCAGTC 57.409 43.478 0.00 0.00 44.66 3.51
259 260 3.971150 GACATCAGTCGACTTAGGGATG 58.029 50.000 28.53 28.53 38.40 3.51
260 261 3.366396 ACATCAGTCGACTTAGGGATGT 58.634 45.455 29.48 29.48 40.17 3.06
261 262 3.769844 ACATCAGTCGACTTAGGGATGTT 59.230 43.478 29.48 19.55 41.68 2.71
262 263 4.223032 ACATCAGTCGACTTAGGGATGTTT 59.777 41.667 29.48 16.81 41.68 2.83
263 264 4.188247 TCAGTCGACTTAGGGATGTTTG 57.812 45.455 17.26 0.60 0.00 2.93
264 265 3.576982 TCAGTCGACTTAGGGATGTTTGT 59.423 43.478 17.26 0.00 0.00 2.83
265 266 4.039973 TCAGTCGACTTAGGGATGTTTGTT 59.960 41.667 17.26 0.00 0.00 2.83
266 267 4.755123 CAGTCGACTTAGGGATGTTTGTTT 59.245 41.667 17.26 0.00 0.00 2.83
267 268 4.995487 AGTCGACTTAGGGATGTTTGTTTC 59.005 41.667 13.58 0.00 0.00 2.78
268 269 4.153655 GTCGACTTAGGGATGTTTGTTTCC 59.846 45.833 8.70 0.00 0.00 3.13
269 270 4.069304 CGACTTAGGGATGTTTGTTTCCA 58.931 43.478 0.00 0.00 33.43 3.53
270 271 4.154195 CGACTTAGGGATGTTTGTTTCCAG 59.846 45.833 0.00 0.00 33.43 3.86
271 272 5.313712 GACTTAGGGATGTTTGTTTCCAGA 58.686 41.667 0.00 0.00 33.43 3.86
272 273 5.316987 ACTTAGGGATGTTTGTTTCCAGAG 58.683 41.667 0.00 0.00 33.43 3.35
273 274 5.073144 ACTTAGGGATGTTTGTTTCCAGAGA 59.927 40.000 0.00 0.00 33.43 3.10
274 275 3.756117 AGGGATGTTTGTTTCCAGAGAC 58.244 45.455 0.00 0.00 33.43 3.36
275 276 3.395941 AGGGATGTTTGTTTCCAGAGACT 59.604 43.478 0.00 0.00 33.43 3.24
276 277 4.141158 AGGGATGTTTGTTTCCAGAGACTT 60.141 41.667 0.00 0.00 33.43 3.01
277 278 5.073144 AGGGATGTTTGTTTCCAGAGACTTA 59.927 40.000 0.00 0.00 33.43 2.24
278 279 5.946377 GGGATGTTTGTTTCCAGAGACTTAT 59.054 40.000 0.00 0.00 33.43 1.73
279 280 6.434340 GGGATGTTTGTTTCCAGAGACTTATT 59.566 38.462 0.00 0.00 33.43 1.40
280 281 7.308435 GGATGTTTGTTTCCAGAGACTTATTG 58.692 38.462 0.00 0.00 31.99 1.90
281 282 7.174946 GGATGTTTGTTTCCAGAGACTTATTGA 59.825 37.037 0.00 0.00 31.99 2.57
282 283 8.641498 ATGTTTGTTTCCAGAGACTTATTGAT 57.359 30.769 0.00 0.00 0.00 2.57
283 284 8.099364 TGTTTGTTTCCAGAGACTTATTGATC 57.901 34.615 0.00 0.00 0.00 2.92
284 285 7.939039 TGTTTGTTTCCAGAGACTTATTGATCT 59.061 33.333 0.00 0.00 0.00 2.75
285 286 9.436957 GTTTGTTTCCAGAGACTTATTGATCTA 57.563 33.333 0.00 0.00 0.00 1.98
287 288 9.605275 TTGTTTCCAGAGACTTATTGATCTATG 57.395 33.333 0.00 0.00 34.60 2.23
321 322 9.668497 AAAAGTCTCTATAAGTCCCATGTAAAC 57.332 33.333 0.00 0.00 0.00 2.01
322 323 7.362802 AGTCTCTATAAGTCCCATGTAAACC 57.637 40.000 0.00 0.00 0.00 3.27
323 324 6.901300 AGTCTCTATAAGTCCCATGTAAACCA 59.099 38.462 0.00 0.00 0.00 3.67
324 325 7.402071 AGTCTCTATAAGTCCCATGTAAACCAA 59.598 37.037 0.00 0.00 0.00 3.67
325 326 8.044908 GTCTCTATAAGTCCCATGTAAACCAAA 58.955 37.037 0.00 0.00 0.00 3.28
326 327 8.044908 TCTCTATAAGTCCCATGTAAACCAAAC 58.955 37.037 0.00 0.00 0.00 2.93
327 328 7.691213 TCTATAAGTCCCATGTAAACCAAACA 58.309 34.615 0.00 0.00 0.00 2.83
328 329 6.834168 ATAAGTCCCATGTAAACCAAACAG 57.166 37.500 0.00 0.00 0.00 3.16
329 330 4.447138 AGTCCCATGTAAACCAAACAGA 57.553 40.909 0.00 0.00 0.00 3.41
330 331 4.798882 AGTCCCATGTAAACCAAACAGAA 58.201 39.130 0.00 0.00 0.00 3.02
331 332 4.827284 AGTCCCATGTAAACCAAACAGAAG 59.173 41.667 0.00 0.00 0.00 2.85
332 333 4.022329 GTCCCATGTAAACCAAACAGAAGG 60.022 45.833 0.00 0.00 0.00 3.46
333 334 3.258123 CCCATGTAAACCAAACAGAAGGG 59.742 47.826 0.00 0.00 33.68 3.95
334 335 4.148838 CCATGTAAACCAAACAGAAGGGA 58.851 43.478 0.00 0.00 0.00 4.20
335 336 4.022329 CCATGTAAACCAAACAGAAGGGAC 60.022 45.833 0.00 0.00 0.00 4.46
354 355 7.150447 AGGGACTTATAGGGATTTAAAGTGG 57.850 40.000 0.00 0.00 27.25 4.00
355 356 5.768662 GGGACTTATAGGGATTTAAAGTGGC 59.231 44.000 0.00 0.00 30.83 5.01
356 357 5.768662 GGACTTATAGGGATTTAAAGTGGCC 59.231 44.000 0.00 0.00 30.83 5.36
357 358 6.335781 ACTTATAGGGATTTAAAGTGGCCA 57.664 37.500 0.00 0.00 0.00 5.36
358 359 6.922540 ACTTATAGGGATTTAAAGTGGCCAT 58.077 36.000 9.72 0.00 0.00 4.40
359 360 7.362234 ACTTATAGGGATTTAAAGTGGCCATT 58.638 34.615 9.72 0.00 0.00 3.16
360 361 7.844269 ACTTATAGGGATTTAAAGTGGCCATTT 59.156 33.333 9.72 8.67 0.00 2.32
361 362 4.824479 AGGGATTTAAAGTGGCCATTTG 57.176 40.909 15.02 0.00 0.00 2.32
362 363 3.519107 AGGGATTTAAAGTGGCCATTTGG 59.481 43.478 15.02 0.00 38.53 3.28
363 364 3.370421 GGGATTTAAAGTGGCCATTTGGG 60.370 47.826 15.02 0.00 40.85 4.12
364 365 3.517500 GGATTTAAAGTGGCCATTTGGGA 59.482 43.478 15.02 3.71 40.01 4.37
376 377 6.478512 GGCCATTTGGGACTTATGAAATAA 57.521 37.500 0.00 0.00 43.78 1.40
391 392 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
392 393 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
393 394 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
394 395 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
395 396 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
396 397 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
397 398 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
398 399 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
399 400 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
400 401 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
401 402 4.156477 CTCTCAAGGAGGGACTTATAGGG 58.844 52.174 0.00 0.00 41.55 3.53
402 403 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
403 404 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
404 405 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
405 406 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
406 407 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
407 408 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
408 409 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
409 410 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
410 411 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
411 412 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
412 413 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
413 414 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
414 415 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
415 416 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
424 425 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
450 451 6.547930 AGAGACTTATAAGTTCCAGGAACC 57.452 41.667 26.34 10.25 42.85 3.62
451 452 6.023603 AGAGACTTATAAGTTCCAGGAACCA 58.976 40.000 26.34 16.25 42.85 3.67
452 453 6.500751 AGAGACTTATAAGTTCCAGGAACCAA 59.499 38.462 26.34 16.22 42.85 3.67
453 454 7.017254 AGAGACTTATAAGTTCCAGGAACCAAA 59.983 37.037 26.34 13.84 42.85 3.28
454 455 6.940867 AGACTTATAAGTTCCAGGAACCAAAC 59.059 38.462 26.34 4.37 42.85 2.93
455 456 6.607019 ACTTATAAGTTCCAGGAACCAAACA 58.393 36.000 26.34 9.53 42.85 2.83
456 457 6.715264 ACTTATAAGTTCCAGGAACCAAACAG 59.285 38.462 26.34 18.96 42.85 3.16
457 458 3.662759 AAGTTCCAGGAACCAAACAGA 57.337 42.857 26.34 0.00 42.85 3.41
458 459 3.884037 AGTTCCAGGAACCAAACAGAT 57.116 42.857 26.34 4.75 42.85 2.90
459 460 4.993705 AGTTCCAGGAACCAAACAGATA 57.006 40.909 26.34 0.00 42.85 1.98
460 461 4.911390 AGTTCCAGGAACCAAACAGATAG 58.089 43.478 26.34 0.00 42.85 2.08
461 462 4.010349 GTTCCAGGAACCAAACAGATAGG 58.990 47.826 20.57 0.00 36.65 2.57
462 463 2.576191 TCCAGGAACCAAACAGATAGGG 59.424 50.000 0.00 0.00 0.00 3.53
463 464 2.576191 CCAGGAACCAAACAGATAGGGA 59.424 50.000 0.00 0.00 0.00 4.20
464 465 3.610911 CAGGAACCAAACAGATAGGGAC 58.389 50.000 0.00 0.00 0.00 4.46
465 466 3.264450 CAGGAACCAAACAGATAGGGACT 59.736 47.826 0.00 0.00 46.37 3.85
466 467 3.916989 AGGAACCAAACAGATAGGGACTT 59.083 43.478 0.00 0.00 41.75 3.01
467 468 4.354087 AGGAACCAAACAGATAGGGACTTT 59.646 41.667 0.00 0.00 41.75 2.66
468 469 5.077564 GGAACCAAACAGATAGGGACTTTT 58.922 41.667 0.00 0.00 41.75 2.27
469 470 5.538813 GGAACCAAACAGATAGGGACTTTTT 59.461 40.000 0.00 0.00 41.75 1.94
470 471 6.717997 GGAACCAAACAGATAGGGACTTTTTA 59.282 38.462 0.00 0.00 41.75 1.52
471 472 7.231925 GGAACCAAACAGATAGGGACTTTTTAA 59.768 37.037 0.00 0.00 41.75 1.52
472 473 7.761038 ACCAAACAGATAGGGACTTTTTAAG 57.239 36.000 0.00 0.00 41.75 1.85
473 474 6.719829 ACCAAACAGATAGGGACTTTTTAAGG 59.280 38.462 0.00 0.00 41.75 2.69
474 475 6.946009 CCAAACAGATAGGGACTTTTTAAGGA 59.054 38.462 0.00 0.00 41.75 3.36
475 476 7.094334 CCAAACAGATAGGGACTTTTTAAGGAC 60.094 40.741 0.00 0.00 41.75 3.85
476 477 6.954352 ACAGATAGGGACTTTTTAAGGACT 57.046 37.500 0.00 0.00 41.75 3.85
477 478 7.331089 ACAGATAGGGACTTTTTAAGGACTT 57.669 36.000 0.00 0.00 41.75 3.01
478 479 7.168905 ACAGATAGGGACTTTTTAAGGACTTG 58.831 38.462 0.00 0.00 41.75 3.16
479 480 7.017254 ACAGATAGGGACTTTTTAAGGACTTGA 59.983 37.037 0.00 0.00 41.75 3.02
480 481 7.550906 CAGATAGGGACTTTTTAAGGACTTGAG 59.449 40.741 0.00 0.00 41.75 3.02
481 482 5.906772 AGGGACTTTTTAAGGACTTGAGA 57.093 39.130 0.00 0.00 27.25 3.27
482 483 5.622180 AGGGACTTTTTAAGGACTTGAGAC 58.378 41.667 0.00 0.00 27.25 3.36
483 484 5.369993 AGGGACTTTTTAAGGACTTGAGACT 59.630 40.000 0.00 0.00 27.25 3.24
484 485 6.062749 GGGACTTTTTAAGGACTTGAGACTT 58.937 40.000 0.00 0.00 0.00 3.01
485 486 7.072076 AGGGACTTTTTAAGGACTTGAGACTTA 59.928 37.037 0.00 0.00 27.25 2.24
486 487 7.883833 GGGACTTTTTAAGGACTTGAGACTTAT 59.116 37.037 0.00 0.00 0.00 1.73
487 488 9.939802 GGACTTTTTAAGGACTTGAGACTTATA 57.060 33.333 0.00 0.00 0.00 0.98
493 494 9.720769 TTTAAGGACTTGAGACTTATAAGTTGG 57.279 33.333 18.96 10.07 39.88 3.77
494 495 6.301169 AGGACTTGAGACTTATAAGTTGGG 57.699 41.667 18.96 10.37 39.88 4.12
495 496 6.023603 AGGACTTGAGACTTATAAGTTGGGA 58.976 40.000 18.96 6.15 39.88 4.37
496 497 6.070710 AGGACTTGAGACTTATAAGTTGGGAC 60.071 42.308 18.96 6.39 39.88 4.46
497 498 6.070710 GGACTTGAGACTTATAAGTTGGGACT 60.071 42.308 18.96 10.98 39.88 3.85
498 499 7.123847 GGACTTGAGACTTATAAGTTGGGACTA 59.876 40.741 18.96 6.16 39.88 2.59
499 500 8.431910 ACTTGAGACTTATAAGTTGGGACTAA 57.568 34.615 18.96 2.28 39.88 2.24
500 501 8.877195 ACTTGAGACTTATAAGTTGGGACTAAA 58.123 33.333 18.96 9.53 39.88 1.85
501 502 9.720769 CTTGAGACTTATAAGTTGGGACTAAAA 57.279 33.333 18.96 8.46 39.88 1.52
523 524 6.835819 AAAAAGCCCTAGAACTTATGAACC 57.164 37.500 0.00 0.00 0.00 3.62
524 525 5.514500 AAAGCCCTAGAACTTATGAACCA 57.486 39.130 0.00 0.00 0.00 3.67
525 526 5.514500 AAGCCCTAGAACTTATGAACCAA 57.486 39.130 0.00 0.00 0.00 3.67
526 527 5.514500 AGCCCTAGAACTTATGAACCAAA 57.486 39.130 0.00 0.00 0.00 3.28
527 528 5.254115 AGCCCTAGAACTTATGAACCAAAC 58.746 41.667 0.00 0.00 0.00 2.93
528 529 5.007682 GCCCTAGAACTTATGAACCAAACA 58.992 41.667 0.00 0.00 0.00 2.83
529 530 5.123979 GCCCTAGAACTTATGAACCAAACAG 59.876 44.000 0.00 0.00 0.00 3.16
530 531 5.648092 CCCTAGAACTTATGAACCAAACAGG 59.352 44.000 0.00 0.00 45.67 4.00
531 532 5.648092 CCTAGAACTTATGAACCAAACAGGG 59.352 44.000 0.00 0.00 43.89 4.45
532 533 3.826729 AGAACTTATGAACCAAACAGGGC 59.173 43.478 0.00 0.00 43.89 5.19
533 534 2.525368 ACTTATGAACCAAACAGGGCC 58.475 47.619 0.00 0.00 43.89 5.80
534 535 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
535 536 2.990740 TATGAACCAAACAGGGCCTT 57.009 45.000 1.32 0.00 43.89 4.35
536 537 2.990740 ATGAACCAAACAGGGCCTTA 57.009 45.000 1.32 0.00 43.89 2.69
537 538 2.757894 TGAACCAAACAGGGCCTTAA 57.242 45.000 1.32 0.00 43.89 1.85
538 539 3.033659 TGAACCAAACAGGGCCTTAAA 57.966 42.857 1.32 0.00 43.89 1.52
539 540 2.696187 TGAACCAAACAGGGCCTTAAAC 59.304 45.455 1.32 0.00 43.89 2.01
540 541 2.767644 ACCAAACAGGGCCTTAAACT 57.232 45.000 1.32 0.00 43.89 2.66
541 542 3.040655 ACCAAACAGGGCCTTAAACTT 57.959 42.857 1.32 0.00 43.89 2.66
542 543 2.963101 ACCAAACAGGGCCTTAAACTTC 59.037 45.455 1.32 0.00 43.89 3.01
543 544 2.962421 CCAAACAGGGCCTTAAACTTCA 59.038 45.455 1.32 0.00 0.00 3.02
544 545 3.243737 CCAAACAGGGCCTTAAACTTCAC 60.244 47.826 1.32 0.00 0.00 3.18
545 546 1.892209 ACAGGGCCTTAAACTTCACG 58.108 50.000 1.32 0.00 0.00 4.35
546 547 1.418637 ACAGGGCCTTAAACTTCACGA 59.581 47.619 1.32 0.00 0.00 4.35
547 548 2.158726 ACAGGGCCTTAAACTTCACGAA 60.159 45.455 1.32 0.00 0.00 3.85
548 549 2.484264 CAGGGCCTTAAACTTCACGAAG 59.516 50.000 1.32 5.24 43.79 3.79
560 561 4.407496 CTTCACGAAGTCTAAGTCGACT 57.593 45.455 13.58 13.58 45.73 4.18
561 562 3.808116 TCACGAAGTCTAAGTCGACTG 57.192 47.619 20.85 7.79 43.14 3.51
562 563 3.396560 TCACGAAGTCTAAGTCGACTGA 58.603 45.455 20.85 11.31 43.14 3.41
563 564 3.432592 TCACGAAGTCTAAGTCGACTGAG 59.567 47.826 22.32 22.32 43.14 3.35
564 565 3.432592 CACGAAGTCTAAGTCGACTGAGA 59.567 47.826 26.12 26.12 43.14 3.27
570 571 4.757594 GTCTAAGTCGACTGAGACCTAGA 58.242 47.826 37.98 26.95 45.01 2.43
571 572 4.757594 TCTAAGTCGACTGAGACCTAGAC 58.242 47.826 26.12 0.00 38.53 2.59
572 573 3.420300 AAGTCGACTGAGACCTAGACA 57.580 47.619 20.85 0.00 41.83 3.41
573 574 2.980568 AGTCGACTGAGACCTAGACAG 58.019 52.381 19.30 0.00 41.83 3.51
574 575 2.568062 AGTCGACTGAGACCTAGACAGA 59.432 50.000 19.30 0.00 41.83 3.41
575 576 2.674357 GTCGACTGAGACCTAGACAGAC 59.326 54.545 8.70 0.00 35.22 3.51
576 577 2.302157 TCGACTGAGACCTAGACAGACA 59.698 50.000 0.00 0.00 35.85 3.41
577 578 3.075148 CGACTGAGACCTAGACAGACAA 58.925 50.000 0.00 0.00 35.85 3.18
578 579 3.502595 CGACTGAGACCTAGACAGACAAA 59.497 47.826 0.00 0.00 35.85 2.83
579 580 4.023107 CGACTGAGACCTAGACAGACAAAA 60.023 45.833 0.00 0.00 35.85 2.44
778 779 1.003718 GTTTCTGACCTGACCCCGG 60.004 63.158 0.00 0.00 0.00 5.73
779 780 2.890766 TTTCTGACCTGACCCCGGC 61.891 63.158 0.00 0.00 0.00 6.13
828 829 2.305927 GAGGGAAGAGGAAACACATGGA 59.694 50.000 0.00 0.00 0.00 3.41
831 833 3.498661 GGGAAGAGGAAACACATGGAAGT 60.499 47.826 0.00 0.00 0.00 3.01
929 931 2.437413 GATCCCAAGAACCCAACTCAC 58.563 52.381 0.00 0.00 0.00 3.51
972 974 0.723414 CGTGTGATCAAGCTGCGATT 59.277 50.000 0.00 0.00 0.00 3.34
1303 1305 3.277211 GACGGCAGAGCGTACACCA 62.277 63.158 0.00 0.00 0.00 4.17
1417 1419 3.316573 CTCCTCAACCCGCTCACCC 62.317 68.421 0.00 0.00 0.00 4.61
1614 1616 1.000717 GAGCTCTACGAGAAGGCCATC 60.001 57.143 5.01 1.19 0.00 3.51
2188 2205 1.487452 GAAGAACACGTCGCTGTGCA 61.487 55.000 6.75 0.00 43.74 4.57
2196 2213 3.071837 TCGCTGTGCATCCCGGTA 61.072 61.111 0.00 0.00 0.00 4.02
2447 2464 2.035442 GCCAAGAGAGTGTTCGCCC 61.035 63.158 0.00 0.00 0.00 6.13
2448 2465 1.376037 CCAAGAGAGTGTTCGCCCC 60.376 63.158 0.00 0.00 0.00 5.80
2520 2537 9.920133 TGAAATTTTAGCAGCATTTAACATACA 57.080 25.926 0.00 0.00 0.00 2.29
2529 2546 8.792633 AGCAGCATTTAACATACAAAGAAGTTA 58.207 29.630 0.00 0.00 0.00 2.24
2530 2547 9.573133 GCAGCATTTAACATACAAAGAAGTTAT 57.427 29.630 0.00 0.00 0.00 1.89
2532 2549 9.573133 AGCATTTAACATACAAAGAAGTTATGC 57.427 29.630 0.00 0.00 36.73 3.14
2533 2550 9.573133 GCATTTAACATACAAAGAAGTTATGCT 57.427 29.630 0.00 0.00 35.05 3.79
2539 2556 8.615878 ACATACAAAGAAGTTATGCTAACACA 57.384 30.769 8.23 0.00 0.00 3.72
2540 2557 9.062524 ACATACAAAGAAGTTATGCTAACACAA 57.937 29.630 8.23 0.00 0.00 3.33
2541 2558 9.546909 CATACAAAGAAGTTATGCTAACACAAG 57.453 33.333 8.23 0.00 0.00 3.16
2542 2559 7.801716 ACAAAGAAGTTATGCTAACACAAGA 57.198 32.000 8.23 0.00 0.00 3.02
2543 2560 8.220755 ACAAAGAAGTTATGCTAACACAAGAA 57.779 30.769 8.23 0.00 0.00 2.52
2544 2561 8.682710 ACAAAGAAGTTATGCTAACACAAGAAA 58.317 29.630 8.23 0.00 0.00 2.52
2545 2562 9.173939 CAAAGAAGTTATGCTAACACAAGAAAG 57.826 33.333 8.23 0.00 0.00 2.62
2546 2563 8.677148 AAGAAGTTATGCTAACACAAGAAAGA 57.323 30.769 8.23 0.00 0.00 2.52
2547 2564 8.854614 AGAAGTTATGCTAACACAAGAAAGAT 57.145 30.769 8.23 0.00 0.00 2.40
2548 2565 9.944376 AGAAGTTATGCTAACACAAGAAAGATA 57.056 29.630 8.23 0.00 0.00 1.98
2556 2573 9.283768 TGCTAACACAAGAAAGATAAAAGATCA 57.716 29.630 0.00 0.00 0.00 2.92
2685 2707 4.672587 TCTGATGACCCTTAATCCTTCG 57.327 45.455 0.00 0.00 0.00 3.79
2919 2990 4.699522 GCCGGAGCCACCTTTCGT 62.700 66.667 5.05 0.00 36.31 3.85
2922 2993 2.342648 GGAGCCACCTTTCGTCGT 59.657 61.111 0.00 0.00 35.41 4.34
2924 2995 1.006571 GAGCCACCTTTCGTCGTGA 60.007 57.895 0.00 0.00 31.36 4.35
2963 3408 2.066999 CGCCCTAGAGCCTCCCTTT 61.067 63.158 0.00 0.00 0.00 3.11
3160 3649 7.272978 AGATCGCCAAGTACTTTGTATACATT 58.727 34.615 5.07 0.00 34.87 2.71
3185 3674 0.250510 TAAACCATCACCGTGCTGCA 60.251 50.000 0.00 0.00 0.00 4.41
3233 3722 3.338126 CTAGCCGTCGCGTGGAGTT 62.338 63.158 21.34 9.85 41.18 3.01
3351 3840 3.785859 CTCCCGCCCTGCTTGCTA 61.786 66.667 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.152341 CACATTGCCAAGTCCTTCTCTT 58.848 45.455 0.00 0.00 0.00 2.85
3 4 1.200948 GCACATTGCCAAGTCCTTCTC 59.799 52.381 0.00 0.00 37.42 2.87
5 6 1.068055 CAGCACATTGCCAAGTCCTTC 60.068 52.381 0.00 0.00 46.52 3.46
6 7 0.963962 CAGCACATTGCCAAGTCCTT 59.036 50.000 0.00 0.00 46.52 3.36
7 8 1.530013 GCAGCACATTGCCAAGTCCT 61.530 55.000 0.00 0.00 46.52 3.85
8 9 1.080298 GCAGCACATTGCCAAGTCC 60.080 57.895 0.00 0.00 46.52 3.85
9 10 0.665369 GTGCAGCACATTGCCAAGTC 60.665 55.000 21.22 0.00 46.52 3.01
10 11 1.111116 AGTGCAGCACATTGCCAAGT 61.111 50.000 27.35 0.00 46.52 3.16
11 12 0.883153 TAGTGCAGCACATTGCCAAG 59.117 50.000 27.35 0.00 46.52 3.61
12 13 0.883153 CTAGTGCAGCACATTGCCAA 59.117 50.000 27.35 2.97 46.52 4.52
13 14 2.558617 CTAGTGCAGCACATTGCCA 58.441 52.632 27.35 4.32 46.52 4.92
23 24 4.031028 GCATTTTTATGTCGCTAGTGCAG 58.969 43.478 0.00 0.00 39.64 4.41
24 25 3.689161 AGCATTTTTATGTCGCTAGTGCA 59.311 39.130 0.00 0.54 39.64 4.57
25 26 4.278678 AGCATTTTTATGTCGCTAGTGC 57.721 40.909 0.00 0.00 0.00 4.40
76 77 3.577649 TTGTTCTTCACACCGCAAAAA 57.422 38.095 0.00 0.00 33.98 1.94
77 78 3.246619 GTTTGTTCTTCACACCGCAAAA 58.753 40.909 0.00 0.00 33.98 2.44
78 79 2.229062 TGTTTGTTCTTCACACCGCAAA 59.771 40.909 0.00 0.00 33.98 3.68
79 80 1.813178 TGTTTGTTCTTCACACCGCAA 59.187 42.857 0.00 0.00 33.98 4.85
80 81 1.454201 TGTTTGTTCTTCACACCGCA 58.546 45.000 0.00 0.00 33.98 5.69
81 82 2.553079 TTGTTTGTTCTTCACACCGC 57.447 45.000 0.00 0.00 33.98 5.68
82 83 4.095610 GTCTTTGTTTGTTCTTCACACCG 58.904 43.478 0.00 0.00 33.98 4.94
83 84 5.054390 TGTCTTTGTTTGTTCTTCACACC 57.946 39.130 0.00 0.00 33.98 4.16
84 85 7.381139 TCTTTTGTCTTTGTTTGTTCTTCACAC 59.619 33.333 0.00 0.00 33.98 3.82
85 86 7.381139 GTCTTTTGTCTTTGTTTGTTCTTCACA 59.619 33.333 0.00 0.00 0.00 3.58
86 87 7.381139 TGTCTTTTGTCTTTGTTTGTTCTTCAC 59.619 33.333 0.00 0.00 0.00 3.18
87 88 7.429633 TGTCTTTTGTCTTTGTTTGTTCTTCA 58.570 30.769 0.00 0.00 0.00 3.02
88 89 7.867445 TGTCTTTTGTCTTTGTTTGTTCTTC 57.133 32.000 0.00 0.00 0.00 2.87
89 90 8.655651 TTTGTCTTTTGTCTTTGTTTGTTCTT 57.344 26.923 0.00 0.00 0.00 2.52
90 91 8.141268 TCTTTGTCTTTTGTCTTTGTTTGTTCT 58.859 29.630 0.00 0.00 0.00 3.01
91 92 8.293114 TCTTTGTCTTTTGTCTTTGTTTGTTC 57.707 30.769 0.00 0.00 0.00 3.18
92 93 8.655651 TTCTTTGTCTTTTGTCTTTGTTTGTT 57.344 26.923 0.00 0.00 0.00 2.83
93 94 8.547894 GTTTCTTTGTCTTTTGTCTTTGTTTGT 58.452 29.630 0.00 0.00 0.00 2.83
94 95 8.547069 TGTTTCTTTGTCTTTTGTCTTTGTTTG 58.453 29.630 0.00 0.00 0.00 2.93
95 96 8.655651 TGTTTCTTTGTCTTTTGTCTTTGTTT 57.344 26.923 0.00 0.00 0.00 2.83
96 97 8.655651 TTGTTTCTTTGTCTTTTGTCTTTGTT 57.344 26.923 0.00 0.00 0.00 2.83
97 98 8.547894 GTTTGTTTCTTTGTCTTTTGTCTTTGT 58.452 29.630 0.00 0.00 0.00 2.83
98 99 8.547069 TGTTTGTTTCTTTGTCTTTTGTCTTTG 58.453 29.630 0.00 0.00 0.00 2.77
99 100 8.655651 TGTTTGTTTCTTTGTCTTTTGTCTTT 57.344 26.923 0.00 0.00 0.00 2.52
100 101 8.547894 GTTGTTTGTTTCTTTGTCTTTTGTCTT 58.452 29.630 0.00 0.00 0.00 3.01
101 102 7.170828 GGTTGTTTGTTTCTTTGTCTTTTGTCT 59.829 33.333 0.00 0.00 0.00 3.41
102 103 7.287950 GGTTGTTTGTTTCTTTGTCTTTTGTC 58.712 34.615 0.00 0.00 0.00 3.18
103 104 6.203915 GGGTTGTTTGTTTCTTTGTCTTTTGT 59.796 34.615 0.00 0.00 0.00 2.83
104 105 6.203723 TGGGTTGTTTGTTTCTTTGTCTTTTG 59.796 34.615 0.00 0.00 0.00 2.44
105 106 6.292150 TGGGTTGTTTGTTTCTTTGTCTTTT 58.708 32.000 0.00 0.00 0.00 2.27
106 107 5.859495 TGGGTTGTTTGTTTCTTTGTCTTT 58.141 33.333 0.00 0.00 0.00 2.52
107 108 5.476091 TGGGTTGTTTGTTTCTTTGTCTT 57.524 34.783 0.00 0.00 0.00 3.01
108 109 5.476091 TTGGGTTGTTTGTTTCTTTGTCT 57.524 34.783 0.00 0.00 0.00 3.41
109 110 5.293324 GGATTGGGTTGTTTGTTTCTTTGTC 59.707 40.000 0.00 0.00 0.00 3.18
110 111 5.182487 GGATTGGGTTGTTTGTTTCTTTGT 58.818 37.500 0.00 0.00 0.00 2.83
111 112 5.181748 TGGATTGGGTTGTTTGTTTCTTTG 58.818 37.500 0.00 0.00 0.00 2.77
112 113 5.428184 TGGATTGGGTTGTTTGTTTCTTT 57.572 34.783 0.00 0.00 0.00 2.52
113 114 5.428184 TTGGATTGGGTTGTTTGTTTCTT 57.572 34.783 0.00 0.00 0.00 2.52
114 115 5.428184 TTTGGATTGGGTTGTTTGTTTCT 57.572 34.783 0.00 0.00 0.00 2.52
115 116 7.793927 TTATTTGGATTGGGTTGTTTGTTTC 57.206 32.000 0.00 0.00 0.00 2.78
116 117 8.759481 ATTTATTTGGATTGGGTTGTTTGTTT 57.241 26.923 0.00 0.00 0.00 2.83
117 118 9.853177 TTATTTATTTGGATTGGGTTGTTTGTT 57.147 25.926 0.00 0.00 0.00 2.83
118 119 9.853177 TTTATTTATTTGGATTGGGTTGTTTGT 57.147 25.926 0.00 0.00 0.00 2.83
142 143 8.527810 TGTTTCTCTGTTGGTTTTGTTCTATTT 58.472 29.630 0.00 0.00 0.00 1.40
143 144 8.062065 TGTTTCTCTGTTGGTTTTGTTCTATT 57.938 30.769 0.00 0.00 0.00 1.73
144 145 7.639113 TGTTTCTCTGTTGGTTTTGTTCTAT 57.361 32.000 0.00 0.00 0.00 1.98
145 146 7.455641 TTGTTTCTCTGTTGGTTTTGTTCTA 57.544 32.000 0.00 0.00 0.00 2.10
146 147 5.975693 TGTTTCTCTGTTGGTTTTGTTCT 57.024 34.783 0.00 0.00 0.00 3.01
147 148 7.414814 TTTTGTTTCTCTGTTGGTTTTGTTC 57.585 32.000 0.00 0.00 0.00 3.18
148 149 7.793927 TTTTTGTTTCTCTGTTGGTTTTGTT 57.206 28.000 0.00 0.00 0.00 2.83
149 150 7.659390 TCATTTTTGTTTCTCTGTTGGTTTTGT 59.341 29.630 0.00 0.00 0.00 2.83
150 151 8.027440 TCATTTTTGTTTCTCTGTTGGTTTTG 57.973 30.769 0.00 0.00 0.00 2.44
151 152 7.148423 GCTCATTTTTGTTTCTCTGTTGGTTTT 60.148 33.333 0.00 0.00 0.00 2.43
152 153 6.313658 GCTCATTTTTGTTTCTCTGTTGGTTT 59.686 34.615 0.00 0.00 0.00 3.27
153 154 5.812127 GCTCATTTTTGTTTCTCTGTTGGTT 59.188 36.000 0.00 0.00 0.00 3.67
154 155 5.351458 GCTCATTTTTGTTTCTCTGTTGGT 58.649 37.500 0.00 0.00 0.00 3.67
155 156 4.746611 GGCTCATTTTTGTTTCTCTGTTGG 59.253 41.667 0.00 0.00 0.00 3.77
156 157 5.350633 TGGCTCATTTTTGTTTCTCTGTTG 58.649 37.500 0.00 0.00 0.00 3.33
157 158 5.596836 TGGCTCATTTTTGTTTCTCTGTT 57.403 34.783 0.00 0.00 0.00 3.16
158 159 5.127682 AGTTGGCTCATTTTTGTTTCTCTGT 59.872 36.000 0.00 0.00 0.00 3.41
159 160 5.594926 AGTTGGCTCATTTTTGTTTCTCTG 58.405 37.500 0.00 0.00 0.00 3.35
160 161 5.859205 AGTTGGCTCATTTTTGTTTCTCT 57.141 34.783 0.00 0.00 0.00 3.10
161 162 7.425606 TCTTAGTTGGCTCATTTTTGTTTCTC 58.574 34.615 0.00 0.00 0.00 2.87
162 163 7.346751 TCTTAGTTGGCTCATTTTTGTTTCT 57.653 32.000 0.00 0.00 0.00 2.52
163 164 8.593492 ATTCTTAGTTGGCTCATTTTTGTTTC 57.407 30.769 0.00 0.00 0.00 2.78
168 169 9.489084 GGTTTTATTCTTAGTTGGCTCATTTTT 57.511 29.630 0.00 0.00 0.00 1.94
169 170 8.094548 GGGTTTTATTCTTAGTTGGCTCATTTT 58.905 33.333 0.00 0.00 0.00 1.82
170 171 7.234577 TGGGTTTTATTCTTAGTTGGCTCATTT 59.765 33.333 0.00 0.00 0.00 2.32
171 172 6.723977 TGGGTTTTATTCTTAGTTGGCTCATT 59.276 34.615 0.00 0.00 0.00 2.57
172 173 6.252995 TGGGTTTTATTCTTAGTTGGCTCAT 58.747 36.000 0.00 0.00 0.00 2.90
173 174 5.636123 TGGGTTTTATTCTTAGTTGGCTCA 58.364 37.500 0.00 0.00 0.00 4.26
174 175 5.393135 GCTGGGTTTTATTCTTAGTTGGCTC 60.393 44.000 0.00 0.00 0.00 4.70
175 176 4.462834 GCTGGGTTTTATTCTTAGTTGGCT 59.537 41.667 0.00 0.00 0.00 4.75
176 177 4.219725 TGCTGGGTTTTATTCTTAGTTGGC 59.780 41.667 0.00 0.00 0.00 4.52
177 178 5.622233 GCTGCTGGGTTTTATTCTTAGTTGG 60.622 44.000 0.00 0.00 0.00 3.77
178 179 5.183904 AGCTGCTGGGTTTTATTCTTAGTTG 59.816 40.000 0.00 0.00 0.00 3.16
179 180 5.325239 AGCTGCTGGGTTTTATTCTTAGTT 58.675 37.500 0.00 0.00 0.00 2.24
180 181 4.923415 AGCTGCTGGGTTTTATTCTTAGT 58.077 39.130 0.00 0.00 0.00 2.24
181 182 7.283127 TCAATAGCTGCTGGGTTTTATTCTTAG 59.717 37.037 13.43 0.00 0.00 2.18
182 183 7.116075 TCAATAGCTGCTGGGTTTTATTCTTA 58.884 34.615 13.43 0.00 0.00 2.10
183 184 5.951747 TCAATAGCTGCTGGGTTTTATTCTT 59.048 36.000 13.43 0.00 0.00 2.52
184 185 5.509498 TCAATAGCTGCTGGGTTTTATTCT 58.491 37.500 13.43 0.00 0.00 2.40
185 186 5.835113 TCAATAGCTGCTGGGTTTTATTC 57.165 39.130 13.43 0.00 0.00 1.75
186 187 6.796785 AATCAATAGCTGCTGGGTTTTATT 57.203 33.333 13.43 0.00 0.00 1.40
187 188 7.896383 TTAATCAATAGCTGCTGGGTTTTAT 57.104 32.000 13.43 0.00 0.00 1.40
188 189 7.177568 TGTTTAATCAATAGCTGCTGGGTTTTA 59.822 33.333 13.43 2.59 0.00 1.52
189 190 6.014669 TGTTTAATCAATAGCTGCTGGGTTTT 60.015 34.615 13.43 3.54 0.00 2.43
190 191 5.480073 TGTTTAATCAATAGCTGCTGGGTTT 59.520 36.000 13.43 5.65 0.00 3.27
191 192 5.016173 TGTTTAATCAATAGCTGCTGGGTT 58.984 37.500 13.43 6.95 0.00 4.11
192 193 4.599041 TGTTTAATCAATAGCTGCTGGGT 58.401 39.130 13.43 0.00 0.00 4.51
193 194 5.581126 TTGTTTAATCAATAGCTGCTGGG 57.419 39.130 13.43 1.42 0.00 4.45
194 195 6.389091 TGTTTGTTTAATCAATAGCTGCTGG 58.611 36.000 13.43 1.81 0.00 4.85
195 196 6.529125 CCTGTTTGTTTAATCAATAGCTGCTG 59.471 38.462 13.43 0.00 0.00 4.41
196 197 6.624423 CCTGTTTGTTTAATCAATAGCTGCT 58.376 36.000 7.57 7.57 0.00 4.24
197 198 5.289434 GCCTGTTTGTTTAATCAATAGCTGC 59.711 40.000 0.00 0.00 0.00 5.25
198 199 5.807011 GGCCTGTTTGTTTAATCAATAGCTG 59.193 40.000 0.00 0.21 0.00 4.24
199 200 5.716703 AGGCCTGTTTGTTTAATCAATAGCT 59.283 36.000 3.11 0.00 0.00 3.32
200 201 5.965922 AGGCCTGTTTGTTTAATCAATAGC 58.034 37.500 3.11 2.13 0.00 2.97
201 202 9.736023 GATTAGGCCTGTTTGTTTAATCAATAG 57.264 33.333 17.99 2.98 31.27 1.73
202 203 9.474313 AGATTAGGCCTGTTTGTTTAATCAATA 57.526 29.630 17.99 0.00 32.60 1.90
203 204 8.253113 CAGATTAGGCCTGTTTGTTTAATCAAT 58.747 33.333 17.99 1.25 32.60 2.57
204 205 7.232534 ACAGATTAGGCCTGTTTGTTTAATCAA 59.767 33.333 17.99 0.00 41.68 2.57
205 206 6.719370 ACAGATTAGGCCTGTTTGTTTAATCA 59.281 34.615 17.99 0.00 41.68 2.57
206 207 7.121315 AGACAGATTAGGCCTGTTTGTTTAATC 59.879 37.037 17.99 13.77 44.14 1.75
207 208 6.948309 AGACAGATTAGGCCTGTTTGTTTAAT 59.052 34.615 17.99 3.82 44.14 1.40
208 209 6.303839 AGACAGATTAGGCCTGTTTGTTTAA 58.696 36.000 17.99 0.00 44.14 1.52
209 210 5.876357 AGACAGATTAGGCCTGTTTGTTTA 58.124 37.500 17.99 0.00 44.14 2.01
210 211 4.729868 AGACAGATTAGGCCTGTTTGTTT 58.270 39.130 17.99 8.10 44.14 2.83
211 212 4.373156 AGACAGATTAGGCCTGTTTGTT 57.627 40.909 17.99 4.42 44.14 2.83
212 213 4.373156 AAGACAGATTAGGCCTGTTTGT 57.627 40.909 17.99 15.32 44.14 2.83
213 214 4.878397 CCTAAGACAGATTAGGCCTGTTTG 59.122 45.833 17.99 12.02 43.97 2.93
214 215 5.104259 CCTAAGACAGATTAGGCCTGTTT 57.896 43.478 17.99 0.00 43.97 2.83
215 216 4.762289 CCTAAGACAGATTAGGCCTGTT 57.238 45.455 17.99 1.25 43.97 3.16
229 230 3.440872 AGTCGACTGATGTCACCTAAGAC 59.559 47.826 19.30 0.00 43.06 3.01
230 231 3.687125 AGTCGACTGATGTCACCTAAGA 58.313 45.455 19.30 0.00 43.06 2.10
231 232 4.442375 AAGTCGACTGATGTCACCTAAG 57.558 45.455 20.85 0.00 43.06 2.18
232 233 4.398358 CCTAAGTCGACTGATGTCACCTAA 59.602 45.833 20.85 0.00 43.06 2.69
233 234 3.945921 CCTAAGTCGACTGATGTCACCTA 59.054 47.826 20.85 3.19 43.06 3.08
234 235 2.755655 CCTAAGTCGACTGATGTCACCT 59.244 50.000 20.85 1.97 43.06 4.00
235 236 2.159226 CCCTAAGTCGACTGATGTCACC 60.159 54.545 20.85 0.00 43.06 4.02
236 237 2.753452 TCCCTAAGTCGACTGATGTCAC 59.247 50.000 20.85 0.00 43.06 3.67
237 238 3.081710 TCCCTAAGTCGACTGATGTCA 57.918 47.619 20.85 0.00 43.06 3.58
238 239 3.381908 ACATCCCTAAGTCGACTGATGTC 59.618 47.826 29.48 1.70 38.67 3.06
239 240 3.366396 ACATCCCTAAGTCGACTGATGT 58.634 45.455 29.48 29.48 38.31 3.06
240 241 4.392921 AACATCCCTAAGTCGACTGATG 57.607 45.455 28.53 28.53 36.54 3.07
241 242 4.223032 ACAAACATCCCTAAGTCGACTGAT 59.777 41.667 20.85 14.28 0.00 2.90
242 243 3.576982 ACAAACATCCCTAAGTCGACTGA 59.423 43.478 20.85 11.31 0.00 3.41
243 244 3.926616 ACAAACATCCCTAAGTCGACTG 58.073 45.455 20.85 7.44 0.00 3.51
244 245 4.618920 AACAAACATCCCTAAGTCGACT 57.381 40.909 13.58 13.58 0.00 4.18
245 246 4.153655 GGAAACAAACATCCCTAAGTCGAC 59.846 45.833 7.70 7.70 0.00 4.20
246 247 4.202377 TGGAAACAAACATCCCTAAGTCGA 60.202 41.667 0.00 0.00 37.44 4.20
247 248 4.069304 TGGAAACAAACATCCCTAAGTCG 58.931 43.478 0.00 0.00 37.44 4.18
248 249 5.313712 TCTGGAAACAAACATCCCTAAGTC 58.686 41.667 0.00 0.00 42.06 3.01
249 250 5.073144 TCTCTGGAAACAAACATCCCTAAGT 59.927 40.000 0.00 0.00 42.06 2.24
250 251 5.412904 GTCTCTGGAAACAAACATCCCTAAG 59.587 44.000 0.00 0.00 42.06 2.18
251 252 5.073144 AGTCTCTGGAAACAAACATCCCTAA 59.927 40.000 0.00 0.00 42.06 2.69
252 253 4.597507 AGTCTCTGGAAACAAACATCCCTA 59.402 41.667 0.00 0.00 42.06 3.53
253 254 3.395941 AGTCTCTGGAAACAAACATCCCT 59.604 43.478 0.00 0.00 42.06 4.20
254 255 3.756117 AGTCTCTGGAAACAAACATCCC 58.244 45.455 0.00 0.00 42.06 3.85
255 256 7.174946 TCAATAAGTCTCTGGAAACAAACATCC 59.825 37.037 0.00 0.00 42.06 3.51
256 257 8.099364 TCAATAAGTCTCTGGAAACAAACATC 57.901 34.615 0.00 0.00 42.06 3.06
257 258 8.641498 ATCAATAAGTCTCTGGAAACAAACAT 57.359 30.769 0.00 0.00 42.06 2.71
258 259 7.939039 AGATCAATAAGTCTCTGGAAACAAACA 59.061 33.333 0.00 0.00 42.06 2.83
259 260 8.329203 AGATCAATAAGTCTCTGGAAACAAAC 57.671 34.615 0.00 0.00 42.06 2.93
261 262 9.605275 CATAGATCAATAAGTCTCTGGAAACAA 57.395 33.333 0.00 0.00 42.06 2.83
262 263 8.206867 CCATAGATCAATAAGTCTCTGGAAACA 58.793 37.037 0.00 0.00 39.69 2.83
263 264 8.424918 TCCATAGATCAATAAGTCTCTGGAAAC 58.575 37.037 6.93 0.00 41.77 2.78
264 265 8.424918 GTCCATAGATCAATAAGTCTCTGGAAA 58.575 37.037 10.01 0.00 44.38 3.13
265 266 7.786943 AGTCCATAGATCAATAAGTCTCTGGAA 59.213 37.037 10.01 0.00 44.38 3.53
266 267 7.301420 AGTCCATAGATCAATAAGTCTCTGGA 58.699 38.462 5.66 5.66 42.19 3.86
267 268 7.537596 AGTCCATAGATCAATAAGTCTCTGG 57.462 40.000 0.00 0.00 39.05 3.86
295 296 9.668497 GTTTACATGGGACTTATAGAGACTTTT 57.332 33.333 0.00 0.00 0.00 2.27
296 297 8.265764 GGTTTACATGGGACTTATAGAGACTTT 58.734 37.037 0.00 0.00 0.00 2.66
297 298 7.402071 TGGTTTACATGGGACTTATAGAGACTT 59.598 37.037 0.00 0.00 0.00 3.01
298 299 6.901300 TGGTTTACATGGGACTTATAGAGACT 59.099 38.462 0.00 0.00 0.00 3.24
299 300 7.120923 TGGTTTACATGGGACTTATAGAGAC 57.879 40.000 0.00 0.00 0.00 3.36
300 301 7.743116 TTGGTTTACATGGGACTTATAGAGA 57.257 36.000 0.00 0.00 0.00 3.10
301 302 7.827236 TGTTTGGTTTACATGGGACTTATAGAG 59.173 37.037 0.00 0.00 0.00 2.43
302 303 7.691213 TGTTTGGTTTACATGGGACTTATAGA 58.309 34.615 0.00 0.00 0.00 1.98
303 304 7.827236 TCTGTTTGGTTTACATGGGACTTATAG 59.173 37.037 0.00 0.00 0.00 1.31
304 305 7.691213 TCTGTTTGGTTTACATGGGACTTATA 58.309 34.615 0.00 0.00 0.00 0.98
305 306 6.548321 TCTGTTTGGTTTACATGGGACTTAT 58.452 36.000 0.00 0.00 0.00 1.73
306 307 5.942961 TCTGTTTGGTTTACATGGGACTTA 58.057 37.500 0.00 0.00 0.00 2.24
307 308 4.798882 TCTGTTTGGTTTACATGGGACTT 58.201 39.130 0.00 0.00 0.00 3.01
308 309 4.447138 TCTGTTTGGTTTACATGGGACT 57.553 40.909 0.00 0.00 0.00 3.85
309 310 4.022329 CCTTCTGTTTGGTTTACATGGGAC 60.022 45.833 0.00 0.00 0.00 4.46
310 311 4.148838 CCTTCTGTTTGGTTTACATGGGA 58.851 43.478 0.00 0.00 0.00 4.37
311 312 3.258123 CCCTTCTGTTTGGTTTACATGGG 59.742 47.826 0.00 0.00 0.00 4.00
312 313 4.022329 GTCCCTTCTGTTTGGTTTACATGG 60.022 45.833 0.00 0.00 0.00 3.66
313 314 4.827284 AGTCCCTTCTGTTTGGTTTACATG 59.173 41.667 0.00 0.00 0.00 3.21
314 315 5.061721 AGTCCCTTCTGTTTGGTTTACAT 57.938 39.130 0.00 0.00 0.00 2.29
315 316 4.513406 AGTCCCTTCTGTTTGGTTTACA 57.487 40.909 0.00 0.00 0.00 2.41
316 317 7.336176 CCTATAAGTCCCTTCTGTTTGGTTTAC 59.664 40.741 0.00 0.00 0.00 2.01
317 318 7.399634 CCTATAAGTCCCTTCTGTTTGGTTTA 58.600 38.462 0.00 0.00 0.00 2.01
318 319 6.246163 CCTATAAGTCCCTTCTGTTTGGTTT 58.754 40.000 0.00 0.00 0.00 3.27
319 320 5.281037 CCCTATAAGTCCCTTCTGTTTGGTT 60.281 44.000 0.00 0.00 0.00 3.67
320 321 4.227527 CCCTATAAGTCCCTTCTGTTTGGT 59.772 45.833 0.00 0.00 0.00 3.67
321 322 4.473559 TCCCTATAAGTCCCTTCTGTTTGG 59.526 45.833 0.00 0.00 0.00 3.28
322 323 5.693769 TCCCTATAAGTCCCTTCTGTTTG 57.306 43.478 0.00 0.00 0.00 2.93
323 324 6.910259 AATCCCTATAAGTCCCTTCTGTTT 57.090 37.500 0.00 0.00 0.00 2.83
324 325 6.910259 AAATCCCTATAAGTCCCTTCTGTT 57.090 37.500 0.00 0.00 0.00 3.16
325 326 8.401955 TTTAAATCCCTATAAGTCCCTTCTGT 57.598 34.615 0.00 0.00 0.00 3.41
326 327 8.495260 ACTTTAAATCCCTATAAGTCCCTTCTG 58.505 37.037 0.00 0.00 0.00 3.02
327 328 8.495260 CACTTTAAATCCCTATAAGTCCCTTCT 58.505 37.037 0.00 0.00 0.00 2.85
328 329 7.720074 CCACTTTAAATCCCTATAAGTCCCTTC 59.280 40.741 0.00 0.00 0.00 3.46
329 330 7.583625 CCACTTTAAATCCCTATAAGTCCCTT 58.416 38.462 0.00 0.00 0.00 3.95
330 331 6.410504 GCCACTTTAAATCCCTATAAGTCCCT 60.411 42.308 0.00 0.00 0.00 4.20
331 332 5.768662 GCCACTTTAAATCCCTATAAGTCCC 59.231 44.000 0.00 0.00 0.00 4.46
332 333 5.768662 GGCCACTTTAAATCCCTATAAGTCC 59.231 44.000 0.00 0.00 0.00 3.85
333 334 6.362248 TGGCCACTTTAAATCCCTATAAGTC 58.638 40.000 0.00 0.00 0.00 3.01
334 335 6.335781 TGGCCACTTTAAATCCCTATAAGT 57.664 37.500 0.00 0.00 0.00 2.24
335 336 7.839680 AATGGCCACTTTAAATCCCTATAAG 57.160 36.000 8.16 0.00 0.00 1.73
336 337 7.070571 CCAAATGGCCACTTTAAATCCCTATAA 59.929 37.037 8.16 0.00 0.00 0.98
337 338 6.553100 CCAAATGGCCACTTTAAATCCCTATA 59.447 38.462 8.16 0.00 0.00 1.31
338 339 5.366477 CCAAATGGCCACTTTAAATCCCTAT 59.634 40.000 8.16 0.00 0.00 2.57
339 340 4.714308 CCAAATGGCCACTTTAAATCCCTA 59.286 41.667 8.16 0.00 0.00 3.53
340 341 3.519107 CCAAATGGCCACTTTAAATCCCT 59.481 43.478 8.16 0.00 0.00 4.20
341 342 3.370421 CCCAAATGGCCACTTTAAATCCC 60.370 47.826 8.16 0.00 0.00 3.85
342 343 3.517500 TCCCAAATGGCCACTTTAAATCC 59.482 43.478 8.16 0.00 0.00 3.01
343 344 4.222810 AGTCCCAAATGGCCACTTTAAATC 59.777 41.667 8.16 0.00 0.00 2.17
344 345 4.167319 AGTCCCAAATGGCCACTTTAAAT 58.833 39.130 8.16 0.00 0.00 1.40
345 346 3.582164 AGTCCCAAATGGCCACTTTAAA 58.418 40.909 8.16 0.00 0.00 1.52
346 347 3.252554 AGTCCCAAATGGCCACTTTAA 57.747 42.857 8.16 0.00 0.00 1.52
347 348 2.990740 AGTCCCAAATGGCCACTTTA 57.009 45.000 8.16 0.00 0.00 1.85
348 349 2.101640 AAGTCCCAAATGGCCACTTT 57.898 45.000 8.16 7.50 34.83 2.66
349 350 2.990740 TAAGTCCCAAATGGCCACTT 57.009 45.000 8.16 0.00 39.06 3.16
350 351 2.311542 TCATAAGTCCCAAATGGCCACT 59.688 45.455 8.16 0.00 0.00 4.00
351 352 2.733956 TCATAAGTCCCAAATGGCCAC 58.266 47.619 8.16 0.00 0.00 5.01
352 353 3.464720 TTCATAAGTCCCAAATGGCCA 57.535 42.857 8.56 8.56 0.00 5.36
353 354 6.323739 TCTTATTTCATAAGTCCCAAATGGCC 59.676 38.462 0.00 0.00 42.21 5.36
354 355 7.068716 AGTCTTATTTCATAAGTCCCAAATGGC 59.931 37.037 3.93 0.00 42.21 4.40
355 356 8.525290 AGTCTTATTTCATAAGTCCCAAATGG 57.475 34.615 3.93 0.00 42.21 3.16
356 357 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
357 358 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
358 359 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
359 360 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
360 361 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
361 362 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
362 363 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
363 364 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
364 365 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
365 366 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
366 367 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
367 368 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
368 369 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
369 370 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
370 371 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
371 372 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
372 373 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
373 374 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
374 375 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
375 376 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
376 377 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
377 378 4.830600 CCTATAAGTCCCTCCTTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
378 379 4.388118 CCCTATAAGTCCCTCCTTGAGAGT 60.388 50.000 0.00 0.00 41.47 3.24
379 380 4.140900 TCCCTATAAGTCCCTCCTTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
380 381 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
381 382 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
382 383 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
383 384 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
384 385 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
385 386 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
386 387 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
387 388 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
388 389 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
389 390 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
398 399 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
424 425 9.364653 GGTTCCTGGAACTTATAAGTCTCTATA 57.635 37.037 32.12 1.68 41.70 1.31
425 426 7.844779 TGGTTCCTGGAACTTATAAGTCTCTAT 59.155 37.037 32.12 2.50 41.70 1.98
426 427 7.186972 TGGTTCCTGGAACTTATAAGTCTCTA 58.813 38.462 32.12 13.70 41.70 2.43
427 428 6.023603 TGGTTCCTGGAACTTATAAGTCTCT 58.976 40.000 32.12 3.26 41.70 3.10
428 429 6.295719 TGGTTCCTGGAACTTATAAGTCTC 57.704 41.667 32.12 15.93 41.70 3.36
429 430 6.697641 TTGGTTCCTGGAACTTATAAGTCT 57.302 37.500 32.12 8.94 41.70 3.24
430 431 6.713450 TGTTTGGTTCCTGGAACTTATAAGTC 59.287 38.462 32.12 17.25 41.70 3.01
431 432 6.607019 TGTTTGGTTCCTGGAACTTATAAGT 58.393 36.000 32.12 12.50 41.70 2.24
432 433 6.940298 TCTGTTTGGTTCCTGGAACTTATAAG 59.060 38.462 32.12 24.06 41.70 1.73
433 434 6.843752 TCTGTTTGGTTCCTGGAACTTATAA 58.156 36.000 32.12 20.94 41.70 0.98
434 435 6.442541 TCTGTTTGGTTCCTGGAACTTATA 57.557 37.500 32.12 17.37 41.70 0.98
435 436 5.319043 TCTGTTTGGTTCCTGGAACTTAT 57.681 39.130 32.12 0.00 41.70 1.73
436 437 4.781775 TCTGTTTGGTTCCTGGAACTTA 57.218 40.909 32.12 21.42 41.70 2.24
437 438 3.662759 TCTGTTTGGTTCCTGGAACTT 57.337 42.857 32.12 0.00 41.70 2.66
438 439 3.884037 ATCTGTTTGGTTCCTGGAACT 57.116 42.857 32.12 12.63 41.70 3.01
439 440 4.010349 CCTATCTGTTTGGTTCCTGGAAC 58.990 47.826 27.59 27.59 41.32 3.62
440 441 3.010138 CCCTATCTGTTTGGTTCCTGGAA 59.990 47.826 4.68 4.68 0.00 3.53
441 442 2.576191 CCCTATCTGTTTGGTTCCTGGA 59.424 50.000 0.00 0.00 0.00 3.86
442 443 2.576191 TCCCTATCTGTTTGGTTCCTGG 59.424 50.000 0.00 0.00 0.00 4.45
443 444 3.264450 AGTCCCTATCTGTTTGGTTCCTG 59.736 47.826 0.00 0.00 0.00 3.86
444 445 3.532102 AGTCCCTATCTGTTTGGTTCCT 58.468 45.455 0.00 0.00 0.00 3.36
445 446 4.302559 AAGTCCCTATCTGTTTGGTTCC 57.697 45.455 0.00 0.00 0.00 3.62
446 447 6.650427 AAAAAGTCCCTATCTGTTTGGTTC 57.350 37.500 0.00 0.00 0.00 3.62
447 448 7.232737 CCTTAAAAAGTCCCTATCTGTTTGGTT 59.767 37.037 0.00 0.00 0.00 3.67
448 449 6.719829 CCTTAAAAAGTCCCTATCTGTTTGGT 59.280 38.462 0.00 0.00 0.00 3.67
449 450 6.946009 TCCTTAAAAAGTCCCTATCTGTTTGG 59.054 38.462 0.00 0.00 0.00 3.28
450 451 7.665974 AGTCCTTAAAAAGTCCCTATCTGTTTG 59.334 37.037 0.00 0.00 0.00 2.93
451 452 7.756614 AGTCCTTAAAAAGTCCCTATCTGTTT 58.243 34.615 0.00 0.00 0.00 2.83
452 453 7.331089 AGTCCTTAAAAAGTCCCTATCTGTT 57.669 36.000 0.00 0.00 0.00 3.16
453 454 6.954352 AGTCCTTAAAAAGTCCCTATCTGT 57.046 37.500 0.00 0.00 0.00 3.41
454 455 7.394816 TCAAGTCCTTAAAAAGTCCCTATCTG 58.605 38.462 0.00 0.00 0.00 2.90
455 456 7.458170 TCTCAAGTCCTTAAAAAGTCCCTATCT 59.542 37.037 0.00 0.00 0.00 1.98
456 457 7.549842 GTCTCAAGTCCTTAAAAAGTCCCTATC 59.450 40.741 0.00 0.00 0.00 2.08
457 458 7.237887 AGTCTCAAGTCCTTAAAAAGTCCCTAT 59.762 37.037 0.00 0.00 0.00 2.57
458 459 6.557633 AGTCTCAAGTCCTTAAAAAGTCCCTA 59.442 38.462 0.00 0.00 0.00 3.53
459 460 5.369993 AGTCTCAAGTCCTTAAAAAGTCCCT 59.630 40.000 0.00 0.00 0.00 4.20
460 461 5.622180 AGTCTCAAGTCCTTAAAAAGTCCC 58.378 41.667 0.00 0.00 0.00 4.46
461 462 8.850007 ATAAGTCTCAAGTCCTTAAAAAGTCC 57.150 34.615 0.00 0.00 0.00 3.85
467 468 9.720769 CCAACTTATAAGTCTCAAGTCCTTAAA 57.279 33.333 18.28 0.00 38.57 1.52
468 469 8.319146 CCCAACTTATAAGTCTCAAGTCCTTAA 58.681 37.037 18.28 0.00 38.57 1.85
469 470 7.676893 TCCCAACTTATAAGTCTCAAGTCCTTA 59.323 37.037 18.28 0.00 38.57 2.69
470 471 6.500751 TCCCAACTTATAAGTCTCAAGTCCTT 59.499 38.462 18.28 0.00 38.57 3.36
471 472 6.023603 TCCCAACTTATAAGTCTCAAGTCCT 58.976 40.000 18.28 0.00 38.57 3.85
472 473 6.070710 AGTCCCAACTTATAAGTCTCAAGTCC 60.071 42.308 18.28 3.21 38.57 3.85
473 474 6.937392 AGTCCCAACTTATAAGTCTCAAGTC 58.063 40.000 18.28 6.78 38.57 3.01
474 475 6.936968 AGTCCCAACTTATAAGTCTCAAGT 57.063 37.500 18.28 5.74 38.57 3.16
475 476 9.720769 TTTTAGTCCCAACTTATAAGTCTCAAG 57.279 33.333 18.28 6.66 38.57 3.02
500 501 6.311735 TGGTTCATAAGTTCTAGGGCTTTTT 58.688 36.000 5.32 0.00 0.00 1.94
501 502 5.887754 TGGTTCATAAGTTCTAGGGCTTTT 58.112 37.500 5.32 0.00 0.00 2.27
502 503 5.514500 TGGTTCATAAGTTCTAGGGCTTT 57.486 39.130 5.32 0.00 0.00 3.51
503 504 5.514500 TTGGTTCATAAGTTCTAGGGCTT 57.486 39.130 0.00 0.00 0.00 4.35
504 505 5.222048 TGTTTGGTTCATAAGTTCTAGGGCT 60.222 40.000 0.00 0.00 0.00 5.19
505 506 5.007682 TGTTTGGTTCATAAGTTCTAGGGC 58.992 41.667 0.00 0.00 0.00 5.19
506 507 5.648092 CCTGTTTGGTTCATAAGTTCTAGGG 59.352 44.000 0.00 0.00 0.00 3.53
507 508 5.648092 CCCTGTTTGGTTCATAAGTTCTAGG 59.352 44.000 0.00 0.00 0.00 3.02
508 509 5.123979 GCCCTGTTTGGTTCATAAGTTCTAG 59.876 44.000 0.00 0.00 0.00 2.43
509 510 5.007682 GCCCTGTTTGGTTCATAAGTTCTA 58.992 41.667 0.00 0.00 0.00 2.10
510 511 3.826729 GCCCTGTTTGGTTCATAAGTTCT 59.173 43.478 0.00 0.00 0.00 3.01
511 512 3.056821 GGCCCTGTTTGGTTCATAAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
512 513 2.897326 GGCCCTGTTTGGTTCATAAGTT 59.103 45.455 0.00 0.00 0.00 2.66
513 514 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
514 515 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
515 516 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
516 517 2.990740 AAGGCCCTGTTTGGTTCATA 57.009 45.000 0.00 0.00 0.00 2.15
517 518 2.990740 TAAGGCCCTGTTTGGTTCAT 57.009 45.000 0.00 0.00 0.00 2.57
518 519 2.696187 GTTTAAGGCCCTGTTTGGTTCA 59.304 45.455 0.00 0.00 0.00 3.18
519 520 2.963101 AGTTTAAGGCCCTGTTTGGTTC 59.037 45.455 0.00 0.00 0.00 3.62
520 521 3.040655 AGTTTAAGGCCCTGTTTGGTT 57.959 42.857 0.00 0.00 0.00 3.67
521 522 2.767644 AGTTTAAGGCCCTGTTTGGT 57.232 45.000 0.00 0.00 0.00 3.67
522 523 2.962421 TGAAGTTTAAGGCCCTGTTTGG 59.038 45.455 0.00 0.00 0.00 3.28
523 524 3.550030 CGTGAAGTTTAAGGCCCTGTTTG 60.550 47.826 0.00 0.00 0.00 2.93
524 525 2.621526 CGTGAAGTTTAAGGCCCTGTTT 59.378 45.455 0.00 0.00 0.00 2.83
525 526 2.158726 TCGTGAAGTTTAAGGCCCTGTT 60.159 45.455 0.00 0.00 0.00 3.16
526 527 1.418637 TCGTGAAGTTTAAGGCCCTGT 59.581 47.619 0.00 0.00 0.00 4.00
527 528 2.178912 TCGTGAAGTTTAAGGCCCTG 57.821 50.000 0.00 0.00 0.00 4.45
528 529 2.779506 CTTCGTGAAGTTTAAGGCCCT 58.220 47.619 0.00 0.00 33.87 5.19
548 549 4.757594 TCTAGGTCTCAGTCGACTTAGAC 58.242 47.826 35.91 35.91 43.41 2.59
549 550 4.222366 TGTCTAGGTCTCAGTCGACTTAGA 59.778 45.833 22.49 22.49 44.96 2.10
550 551 4.505808 TGTCTAGGTCTCAGTCGACTTAG 58.494 47.826 17.26 18.13 41.99 2.18
551 552 4.222366 TCTGTCTAGGTCTCAGTCGACTTA 59.778 45.833 17.26 7.41 34.38 2.24
552 553 3.008157 TCTGTCTAGGTCTCAGTCGACTT 59.992 47.826 17.26 2.43 34.38 3.01
553 554 2.568062 TCTGTCTAGGTCTCAGTCGACT 59.432 50.000 13.58 13.58 34.38 4.18
554 555 2.674357 GTCTGTCTAGGTCTCAGTCGAC 59.326 54.545 7.70 7.70 0.00 4.20
555 556 2.302157 TGTCTGTCTAGGTCTCAGTCGA 59.698 50.000 0.00 0.00 0.00 4.20
556 557 2.701107 TGTCTGTCTAGGTCTCAGTCG 58.299 52.381 0.00 0.00 0.00 4.18
557 558 5.455056 TTTTGTCTGTCTAGGTCTCAGTC 57.545 43.478 0.00 0.00 0.00 3.51
558 559 5.871396 TTTTTGTCTGTCTAGGTCTCAGT 57.129 39.130 0.00 0.00 0.00 3.41
828 829 1.268992 TGGCGTGCCCCATACTACTT 61.269 55.000 8.69 0.00 34.56 2.24
831 833 2.904905 GTGGCGTGCCCCATACTA 59.095 61.111 8.69 0.00 37.20 1.82
929 931 1.002792 AGGAAGAGGAGGGAGCAGG 59.997 63.158 0.00 0.00 0.00 4.85
972 974 3.639008 CGCAACGCACAGCACAGA 61.639 61.111 0.00 0.00 0.00 3.41
1774 1788 4.457496 CGTGGAGGAGGCACGCAT 62.457 66.667 0.00 0.00 35.56 4.73
1858 1872 4.430765 GTCCGCCGTGACGTCCAT 62.431 66.667 14.12 0.00 0.00 3.41
2188 2205 2.125961 GGCAGTCGTCTACCGGGAT 61.126 63.158 6.32 0.00 37.11 3.85
2432 2449 1.757699 GATAGGGGCGAACACTCTCTT 59.242 52.381 0.00 0.00 0.00 2.85
2447 2464 3.538591 TGAAATGCTCTGTGCTGATAGG 58.461 45.455 3.20 0.00 43.37 2.57
2448 2465 5.556355 TTTGAAATGCTCTGTGCTGATAG 57.444 39.130 3.20 0.00 43.37 2.08
2519 2536 9.173939 CTTTCTTGTGTTAGCATAACTTCTTTG 57.826 33.333 1.76 0.00 0.00 2.77
2520 2537 9.120538 TCTTTCTTGTGTTAGCATAACTTCTTT 57.879 29.630 1.76 0.00 0.00 2.52
2530 2547 9.283768 TGATCTTTTATCTTTCTTGTGTTAGCA 57.716 29.630 0.00 0.00 0.00 3.49
2587 2604 8.936764 ACAGGGGTAGTAGATAGTAGATAGAT 57.063 38.462 0.00 0.00 0.00 1.98
2588 2605 9.849752 TTACAGGGGTAGTAGATAGTAGATAGA 57.150 37.037 0.00 0.00 0.00 1.98
2624 2646 1.202879 TGATTGTTTGGTTCTCCGCCT 60.203 47.619 0.00 0.00 36.30 5.52
2627 2649 2.484264 GGTCTGATTGTTTGGTTCTCCG 59.516 50.000 0.00 0.00 36.30 4.63
2685 2707 3.178814 CGTGGTTTGTTGCGTTAAACATC 59.821 43.478 10.38 3.86 39.68 3.06
2900 2971 4.388499 GAAAGGTGGCTCCGGCGA 62.388 66.667 9.30 0.00 41.99 5.54
2944 3015 4.548513 AGGGAGGCTCTAGGGCGG 62.549 72.222 15.23 0.00 45.89 6.13
2945 3016 2.066999 AAAGGGAGGCTCTAGGGCG 61.067 63.158 15.23 0.00 45.89 6.13
2946 3017 1.529309 CAAAGGGAGGCTCTAGGGC 59.471 63.158 15.23 5.86 41.20 5.19
2947 3018 0.985490 AGCAAAGGGAGGCTCTAGGG 60.985 60.000 15.23 2.16 34.76 3.53
2948 3019 0.179936 CAGCAAAGGGAGGCTCTAGG 59.820 60.000 15.23 1.44 38.56 3.02
2949 3020 0.463474 GCAGCAAAGGGAGGCTCTAG 60.463 60.000 15.23 1.47 38.56 2.43
2950 3021 1.604378 GCAGCAAAGGGAGGCTCTA 59.396 57.895 15.23 0.00 38.56 2.43
2951 3022 2.354343 GCAGCAAAGGGAGGCTCT 59.646 61.111 15.23 0.00 38.56 4.09
2952 3023 3.130160 CGCAGCAAAGGGAGGCTC 61.130 66.667 5.78 5.78 38.56 4.70
2953 3024 4.729918 CCGCAGCAAAGGGAGGCT 62.730 66.667 0.00 0.00 42.06 4.58
3185 3674 2.980233 GCAGCGGCACTTCTTGGT 60.980 61.111 3.18 0.00 40.72 3.67
3351 3840 0.601576 ACACACACACACACACACGT 60.602 50.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.