Multiple sequence alignment - TraesCS7A01G411000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G411000 chr7A 100.000 6541 0 0 1 6541 598949217 598955757 0.000000e+00 12080.0
1 TraesCS7A01G411000 chr7A 97.106 6565 136 18 1 6541 599498946 599505480 0.000000e+00 11021.0
2 TraesCS7A01G411000 chr7A 87.898 4619 372 68 1603 6157 600552791 600557286 0.000000e+00 5260.0
3 TraesCS7A01G411000 chr7A 88.424 2894 220 57 1240 4079 601466781 601469613 0.000000e+00 3382.0
4 TraesCS7A01G411000 chr7A 91.151 2294 143 36 613 2888 602020415 602022666 0.000000e+00 3057.0
5 TraesCS7A01G411000 chr7A 87.426 1352 110 25 3971 5296 602022692 602024009 0.000000e+00 1500.0
6 TraesCS7A01G411000 chr7A 87.654 1134 97 17 4187 5296 601469614 601470728 0.000000e+00 1279.0
7 TraesCS7A01G411000 chr7A 82.224 1097 163 17 4845 5936 600639481 600640550 0.000000e+00 917.0
8 TraesCS7A01G411000 chr7A 85.696 769 76 6 5172 5937 602023927 602024664 0.000000e+00 780.0
9 TraesCS7A01G411000 chr7A 87.923 679 38 10 536 1180 600550919 600551587 0.000000e+00 760.0
10 TraesCS7A01G411000 chr7A 88.361 653 28 18 476 1111 601466162 601466783 0.000000e+00 741.0
11 TraesCS7A01G411000 chr7A 93.991 466 27 1 18 482 601465471 601465936 0.000000e+00 704.0
12 TraesCS7A01G411000 chr7A 94.103 407 22 2 1 406 602019691 602020096 9.320000e-173 617.0
13 TraesCS7A01G411000 chr7A 91.316 380 30 2 1223 1600 600551591 600551969 3.500000e-142 516.0
14 TraesCS7A01G411000 chr7A 95.789 95 4 0 476 570 602020235 602020329 3.160000e-33 154.0
15 TraesCS7A01G411000 chr7A 85.981 107 13 1 5795 5899 601478245 601478351 5.360000e-21 113.0
16 TraesCS7A01G411000 chr7A 100.000 43 0 0 1179 1221 599500181 599500223 5.440000e-11 80.5
17 TraesCS7A01G411000 chr7A 97.436 39 1 0 1183 1221 601466781 601466819 4.230000e-07 67.6
18 TraesCS7A01G411000 chr7B 96.219 6030 163 27 1 6014 554358977 554364957 0.000000e+00 9812.0
19 TraesCS7A01G411000 chr7B 88.478 4678 367 69 1223 5819 554778417 554783003 0.000000e+00 5494.0
20 TraesCS7A01G411000 chr7B 88.627 2884 220 55 1240 4079 555216914 555219733 0.000000e+00 3410.0
21 TraesCS7A01G411000 chr7B 90.673 2155 141 36 756 2888 555417191 555419307 0.000000e+00 2811.0
22 TraesCS7A01G411000 chr7B 88.453 1351 115 13 3971 5296 555419333 555420667 0.000000e+00 1592.0
23 TraesCS7A01G411000 chr7B 82.951 1484 201 20 4456 5936 555308249 555309683 0.000000e+00 1291.0
24 TraesCS7A01G411000 chr7B 92.473 651 29 6 536 1180 554777777 554778413 0.000000e+00 913.0
25 TraesCS7A01G411000 chr7B 92.516 481 35 1 1 480 555215586 555216066 0.000000e+00 688.0
26 TraesCS7A01G411000 chr7B 93.382 408 23 4 1 406 555416260 555416665 9.380000e-168 601.0
27 TraesCS7A01G411000 chr7B 90.476 462 28 9 756 1208 595521260 595520806 4.370000e-166 595.0
28 TraesCS7A01G411000 chr7B 82.815 675 65 15 5386 6014 555420880 555421549 2.060000e-154 556.0
29 TraesCS7A01G411000 chr7B 90.885 384 20 3 6131 6512 554365323 554365693 9.790000e-138 501.0
30 TraesCS7A01G411000 chr7B 79.832 714 105 28 5382 6086 555224861 555225544 9.860000e-133 484.0
31 TraesCS7A01G411000 chr7B 98.810 84 1 0 6030 6113 554364942 554365025 4.090000e-32 150.0
32 TraesCS7A01G411000 chr7B 90.566 106 9 1 5822 5926 555229332 555229437 8.840000e-29 139.0
33 TraesCS7A01G411000 chr7B 100.000 43 0 0 1179 1221 554360185 554360227 5.440000e-11 80.5
34 TraesCS7A01G411000 chr7D 97.412 4211 88 12 1818 6014 520877092 520881295 0.000000e+00 7153.0
35 TraesCS7A01G411000 chr7D 88.571 4655 375 62 1225 5809 520944881 520949448 0.000000e+00 5504.0
36 TraesCS7A01G411000 chr7D 91.564 2430 147 30 476 2888 521707407 521709795 0.000000e+00 3299.0
37 TraesCS7A01G411000 chr7D 97.148 1823 28 6 1 1819 520875208 520877010 0.000000e+00 3057.0
38 TraesCS7A01G411000 chr7D 90.537 1638 113 21 1240 2857 521571550 521573165 0.000000e+00 2128.0
39 TraesCS7A01G411000 chr7D 86.624 1854 162 36 3979 5789 521709794 521711604 0.000000e+00 1971.0
40 TraesCS7A01G411000 chr7D 84.438 1478 180 17 4458 5932 521593694 521595124 0.000000e+00 1410.0
41 TraesCS7A01G411000 chr7D 88.106 1135 91 17 4187 5296 521577302 521578417 0.000000e+00 1308.0
42 TraesCS7A01G411000 chr7D 86.210 1240 96 36 2887 4079 521576090 521577301 0.000000e+00 1273.0
43 TraesCS7A01G411000 chr7D 94.788 518 21 6 6030 6541 520881280 520881797 0.000000e+00 802.0
44 TraesCS7A01G411000 chr7D 87.865 651 33 13 477 1111 521570932 521571552 0.000000e+00 723.0
45 TraesCS7A01G411000 chr7D 93.139 481 32 1 1 480 521557583 521558063 0.000000e+00 704.0
46 TraesCS7A01G411000 chr7D 94.103 407 22 2 1 406 521706863 521707268 9.320000e-173 617.0
47 TraesCS7A01G411000 chr7D 80.474 717 99 27 5382 6086 521586503 521587190 1.630000e-140 510.0
48 TraesCS7A01G411000 chr7D 86.154 195 13 8 5903 6086 520949472 520949663 1.440000e-46 198.0
49 TraesCS7A01G411000 chr7D 85.811 148 14 5 5795 5936 521578871 521579017 4.090000e-32 150.0
50 TraesCS7A01G411000 chr7D 100.000 43 0 0 1179 1221 520876445 520876487 5.440000e-11 80.5
51 TraesCS7A01G411000 chr7D 97.436 39 1 0 1183 1221 521571550 521571588 4.230000e-07 67.6
52 TraesCS7A01G411000 chr2D 91.398 93 6 2 6451 6541 335685869 335685961 6.890000e-25 126.0
53 TraesCS7A01G411000 chr2B 91.398 93 6 2 6451 6541 403698331 403698423 6.890000e-25 126.0
54 TraesCS7A01G411000 chr2A 91.398 93 6 2 6451 6541 446068234 446068326 6.890000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G411000 chr7A 598949217 598955757 6540 False 12080.000000 12080 100.000000 1 6541 1 chr7A.!!$F1 6540
1 TraesCS7A01G411000 chr7A 599498946 599505480 6534 False 11021.000000 11021 97.106000 1 6541 1 chr7A.!!$F2 6540
2 TraesCS7A01G411000 chr7A 600550919 600557286 6367 False 2178.666667 5260 89.045667 536 6157 3 chr7A.!!$F6 5621
3 TraesCS7A01G411000 chr7A 601465471 601470728 5257 False 1234.720000 3382 91.173200 18 5296 5 chr7A.!!$F7 5278
4 TraesCS7A01G411000 chr7A 602019691 602024664 4973 False 1221.600000 3057 90.833000 1 5937 5 chr7A.!!$F8 5936
5 TraesCS7A01G411000 chr7A 600639481 600640550 1069 False 917.000000 917 82.224000 4845 5936 1 chr7A.!!$F4 1091
6 TraesCS7A01G411000 chr7B 554358977 554364957 5980 False 9812.000000 9812 96.219000 1 6014 1 chr7B.!!$F1 6013
7 TraesCS7A01G411000 chr7B 554777777 554783003 5226 False 3203.500000 5494 90.475500 536 5819 2 chr7B.!!$F5 5283
8 TraesCS7A01G411000 chr7B 555215586 555219733 4147 False 2049.000000 3410 90.571500 1 4079 2 chr7B.!!$F6 4078
9 TraesCS7A01G411000 chr7B 555416260 555421549 5289 False 1390.000000 2811 88.830750 1 6014 4 chr7B.!!$F8 6013
10 TraesCS7A01G411000 chr7B 555308249 555309683 1434 False 1291.000000 1291 82.951000 4456 5936 1 chr7B.!!$F3 1480
11 TraesCS7A01G411000 chr7B 554364942 554365693 751 False 325.500000 501 94.847500 6030 6512 2 chr7B.!!$F4 482
12 TraesCS7A01G411000 chr7B 555224861 555229437 4576 False 311.500000 484 85.199000 5382 6086 2 chr7B.!!$F7 704
13 TraesCS7A01G411000 chr7D 520944881 520949663 4782 False 2851.000000 5504 87.362500 1225 6086 2 chr7D.!!$F5 4861
14 TraesCS7A01G411000 chr7D 520875208 520881797 6589 False 2773.125000 7153 97.337000 1 6541 4 chr7D.!!$F4 6540
15 TraesCS7A01G411000 chr7D 521706863 521711604 4741 False 1962.333333 3299 90.763667 1 5789 3 chr7D.!!$F8 5788
16 TraesCS7A01G411000 chr7D 521593694 521595124 1430 False 1410.000000 1410 84.438000 4458 5932 1 chr7D.!!$F3 1474
17 TraesCS7A01G411000 chr7D 521570932 521573165 2233 False 972.866667 2128 91.946000 477 2857 3 chr7D.!!$F6 2380
18 TraesCS7A01G411000 chr7D 521576090 521579017 2927 False 910.333333 1308 86.709000 2887 5936 3 chr7D.!!$F7 3049
19 TraesCS7A01G411000 chr7D 521586503 521587190 687 False 510.000000 510 80.474000 5382 6086 1 chr7D.!!$F2 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 1233 2.741517 TGTACATGGTCTTGCATGTTCG 59.258 45.455 0.00 0.00 41.62 3.95 F
1370 2288 0.320946 GGTGTACGGCTGTTTGGCTA 60.321 55.000 1.99 0.00 39.32 3.93 F
1438 2392 0.744281 CTTGGCGTGAAGTTTGGGTT 59.256 50.000 0.00 0.00 0.00 4.11 F
2178 4066 1.555075 GAGATGGACACCTTGGTGCTA 59.445 52.381 18.67 10.39 0.00 3.49 F
2811 4704 0.762418 TGCCGGTACATCAATAGGGG 59.238 55.000 1.90 0.00 0.00 4.79 F
3087 5005 1.008938 ACAGCTGACTATCCCCCTTCT 59.991 52.381 23.35 0.00 0.00 2.85 F
4478 6521 2.159170 CCGGGTGCTTGTTTGAGAAAAA 60.159 45.455 0.00 0.00 0.00 1.94 F
4963 7011 0.038159 CGTCCACCTCCAGTTCTGAC 60.038 60.000 1.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 3581 2.224066 ACTACATATGCTGCCTCCGTTC 60.224 50.000 1.58 0.00 0.00 3.95 R
2286 4176 3.088532 TGCAACCAAGAAACAACACTCT 58.911 40.909 0.00 0.00 0.00 3.24 R
2328 4218 4.074526 ATGCGTGCGGAGACTGCT 62.075 61.111 0.00 0.00 0.00 4.24 R
3571 5556 2.158579 TCCAGTAGGTGTTTGTTTCCCC 60.159 50.000 0.00 0.00 35.89 4.81 R
4810 6858 1.204786 CCACACCATCCCAGGGTACA 61.205 60.000 5.01 0.00 36.72 2.90 R
4888 6936 2.858974 CCCCCACTTGTCCCCACT 60.859 66.667 0.00 0.00 0.00 4.00 R
5291 7423 2.733552 CTCGTTCACTTCATGTGGAGTG 59.266 50.000 14.07 14.07 46.20 3.51 R
5829 11345 4.527944 GGATTTCTCCCTAGGAACCTTTG 58.472 47.826 11.48 0.00 35.28 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
701 1233 2.741517 TGTACATGGTCTTGCATGTTCG 59.258 45.455 0.00 0.00 41.62 3.95
969 1672 2.765699 ACCACAAACATTGGCAGACTTT 59.234 40.909 0.00 0.00 37.69 2.66
1116 1820 2.425143 TCAATCCCAAGCATCTCCAC 57.575 50.000 0.00 0.00 0.00 4.02
1292 2208 8.274322 TGATATTTGTTGGTGTCTTCTATCCAT 58.726 33.333 0.00 0.00 0.00 3.41
1370 2288 0.320946 GGTGTACGGCTGTTTGGCTA 60.321 55.000 1.99 0.00 39.32 3.93
1397 2343 1.143889 TGGGTGTACATCTGTTTGGCA 59.856 47.619 6.00 0.00 0.00 4.92
1438 2392 0.744281 CTTGGCGTGAAGTTTGGGTT 59.256 50.000 0.00 0.00 0.00 4.11
1474 2428 6.480981 CGGTGGGACAATTTATACGTTCTATT 59.519 38.462 0.00 0.00 44.16 1.73
1478 2432 9.621629 TGGGACAATTTATACGTTCTATTCATT 57.378 29.630 0.00 0.00 31.92 2.57
1600 2554 3.635373 GTGAACCTGTCCTCGGTATCATA 59.365 47.826 0.00 0.00 33.53 2.15
1601 2555 3.635373 TGAACCTGTCCTCGGTATCATAC 59.365 47.826 0.00 0.00 33.53 2.39
1974 3861 3.302161 AGTACGTGCAGGTTGGGATATA 58.698 45.455 18.35 0.00 0.00 0.86
2066 3953 7.936584 TGTTTTGTAGTTCTTCCATTCGAAAT 58.063 30.769 0.00 0.00 0.00 2.17
2178 4066 1.555075 GAGATGGACACCTTGGTGCTA 59.445 52.381 18.67 10.39 0.00 3.49
2286 4176 9.540538 TTTTCCATCCCAAACTCATTAATCTAA 57.459 29.630 0.00 0.00 0.00 2.10
2328 4218 4.383173 CAGCTATGTGTGCCTATGATGAA 58.617 43.478 0.00 0.00 0.00 2.57
2337 4227 2.103771 TGCCTATGATGAAGCAGTCTCC 59.896 50.000 0.00 0.00 0.00 3.71
2354 4244 4.465512 CGCACGCATGACCCTTGC 62.466 66.667 0.00 0.00 36.74 4.01
2503 4393 3.085443 ACGCGAATGTCTATTCAGAGG 57.915 47.619 15.93 0.00 42.27 3.69
2686 4578 2.279502 TAACAGCTGCTACGGCTCGG 62.280 60.000 15.27 0.00 43.23 4.63
2810 4703 2.631160 TTGCCGGTACATCAATAGGG 57.369 50.000 1.90 0.00 0.00 3.53
2811 4704 0.762418 TGCCGGTACATCAATAGGGG 59.238 55.000 1.90 0.00 0.00 4.79
2971 4889 1.868109 GCACTTTCCCGAACCTTTTGC 60.868 52.381 0.00 0.00 0.00 3.68
3087 5005 1.008938 ACAGCTGACTATCCCCCTTCT 59.991 52.381 23.35 0.00 0.00 2.85
3172 5091 5.130145 AGAGATGGAAGCTACTATGCACTTT 59.870 40.000 0.00 0.00 22.26 2.66
3279 5223 5.400870 AGAGATCTGATCATGGTGGTCATA 58.599 41.667 19.12 0.00 36.82 2.15
3286 5230 7.748677 TCTGATCATGGTGGTCATAATTACAT 58.251 34.615 0.00 0.00 36.82 2.29
3498 5466 6.981722 AGTGACCAAAGAAATTGATGTTACC 58.018 36.000 0.00 0.00 41.85 2.85
3569 5554 2.969262 TGGGCAAAAGGGAAAAAGGTAG 59.031 45.455 0.00 0.00 0.00 3.18
3571 5556 3.258372 GGGCAAAAGGGAAAAAGGTAGAG 59.742 47.826 0.00 0.00 0.00 2.43
3573 5558 3.258372 GCAAAAGGGAAAAAGGTAGAGGG 59.742 47.826 0.00 0.00 0.00 4.30
3852 5859 9.031537 CCTTTTAATTCATACCCCAGTAAAAGT 57.968 33.333 0.00 0.00 36.23 2.66
3866 5873 6.987992 CCCAGTAAAAGTTCACACAGTTACTA 59.012 38.462 0.00 0.00 34.96 1.82
4142 6151 6.183360 GCAGCTTCAGGAGTAGATTTTGTTAG 60.183 42.308 0.00 0.00 0.00 2.34
4200 6217 5.252969 TGTTAGCACCGAATTCGTAGTAT 57.747 39.130 25.10 11.73 37.74 2.12
4478 6521 2.159170 CCGGGTGCTTGTTTGAGAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
4507 6551 6.377327 ACATACTCCACAAGTTTCAAGTTG 57.623 37.500 5.69 5.69 43.34 3.16
4700 6748 5.129815 ACATTATGCCAGCATGAAGGAATTT 59.870 36.000 15.29 0.00 39.69 1.82
4810 6858 3.051940 TGCCTCTTCTATCTGGGACAT 57.948 47.619 0.00 0.00 38.20 3.06
4888 6936 2.618559 GGTACAATTACCCCGGAAAGCA 60.619 50.000 0.73 0.00 42.05 3.91
4963 7011 0.038159 CGTCCACCTCCAGTTCTGAC 60.038 60.000 1.00 0.00 0.00 3.51
5156 7204 4.264253 CAGGCAAGATTGTCATCAACCTA 58.736 43.478 0.00 0.00 36.33 3.08
5192 7240 2.872038 GCAGAAAGACACCAAGGACGAT 60.872 50.000 0.00 0.00 0.00 3.73
5199 7247 0.884259 CACCAAGGACGATGTGCACA 60.884 55.000 24.08 24.08 0.00 4.57
5539 10952 1.656652 CTCCAGGTAGACGGCATTTG 58.343 55.000 0.00 0.00 0.00 2.32
5829 11345 8.494016 AATAAGACTGGTGAAGTATAAGCAAC 57.506 34.615 0.00 0.00 40.07 4.17
6255 12116 7.709182 TGATTGGATTGTACCTACTAAATCACG 59.291 37.037 4.37 0.00 31.92 4.35
6329 12191 5.825679 CAGATTAACGTGGGGATTATTGGAA 59.174 40.000 0.00 0.00 0.00 3.53
6432 12294 3.823873 ACGAAAAATAACTGCATGGACCA 59.176 39.130 0.00 0.00 0.00 4.02
6434 12296 5.221342 ACGAAAAATAACTGCATGGACCAAA 60.221 36.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
701 1233 5.915196 GTGCTTCTTCAGTTTCCAATGTAAC 59.085 40.000 0.00 0.00 0.00 2.50
1116 1820 3.939592 GACAGGAAGGGGAAAATACGAAG 59.060 47.826 0.00 0.00 0.00 3.79
1272 2188 6.212589 TGACTATGGATAGAAGACACCAACAA 59.787 38.462 0.54 0.00 36.00 2.83
1292 2208 7.100458 TCTGAAATTCGATCAGATGTGACTA 57.900 36.000 12.16 0.00 46.23 2.59
1370 2288 6.239289 CCAAACAGATGTACACCCAAATTTCT 60.239 38.462 0.00 0.00 0.00 2.52
1397 2343 0.250597 GCCGTACACCCAAACTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
1474 2428 9.778741 GTTAATTAGTGGTCCAGATCATAATGA 57.221 33.333 0.00 0.00 0.00 2.57
1478 2432 6.325545 ACCGTTAATTAGTGGTCCAGATCATA 59.674 38.462 0.00 0.00 0.00 2.15
1600 2554 5.350914 GGTCGTACGAGCTATACATGATAGT 59.649 44.000 33.65 0.00 39.94 2.12
1601 2555 5.350640 TGGTCGTACGAGCTATACATGATAG 59.649 44.000 37.80 3.87 42.49 2.08
1782 3581 2.224066 ACTACATATGCTGCCTCCGTTC 60.224 50.000 1.58 0.00 0.00 3.95
2066 3953 3.577919 GAATCTAGGGCCTCTTCCACTA 58.422 50.000 10.74 0.00 0.00 2.74
2178 4066 3.194116 GTGCATTCAGGATGTGGTGAAAT 59.806 43.478 0.00 0.00 36.31 2.17
2261 4151 9.189156 CTTAGATTAATGAGTTTGGGATGGAAA 57.811 33.333 0.00 0.00 0.00 3.13
2286 4176 3.088532 TGCAACCAAGAAACAACACTCT 58.911 40.909 0.00 0.00 0.00 3.24
2328 4218 4.074526 ATGCGTGCGGAGACTGCT 62.075 61.111 0.00 0.00 0.00 4.24
2337 4227 4.465512 GCAAGGGTCATGCGTGCG 62.466 66.667 0.00 0.00 33.57 5.34
2354 4244 4.386652 GCTTAACCACATTGAAGCATGTTG 59.613 41.667 0.00 0.00 43.06 3.33
2503 4393 4.455606 CTCCATAAGAACCAACCCAGATC 58.544 47.826 0.00 0.00 0.00 2.75
3279 5223 6.839124 TGCAACTTCAGGAATCATGTAATT 57.161 33.333 0.00 0.00 0.00 1.40
3498 5466 3.942829 TGGTAAAAGGACTCATCTGCAG 58.057 45.455 7.63 7.63 0.00 4.41
3569 5554 3.146847 CAGTAGGTGTTTGTTTCCCCTC 58.853 50.000 0.00 0.00 0.00 4.30
3571 5556 2.158579 TCCAGTAGGTGTTTGTTTCCCC 60.159 50.000 0.00 0.00 35.89 4.81
3573 5558 5.106277 GCTATTCCAGTAGGTGTTTGTTTCC 60.106 44.000 0.00 0.00 35.89 3.13
3852 5859 2.632996 AGCCTGCTAGTAACTGTGTGAA 59.367 45.455 0.00 0.00 0.00 3.18
4228 6245 8.986477 ATTAATCAGTCAATTTGGTAAACTGC 57.014 30.769 9.83 0.00 37.76 4.40
4478 6521 9.965824 CTTGAAACTTGTGGAGTATGTATTTTT 57.034 29.630 0.00 0.00 37.72 1.94
4507 6551 6.292389 AGCATAACAACGCTGAAATAGATC 57.708 37.500 0.00 0.00 37.02 2.75
4810 6858 1.204786 CCACACCATCCCAGGGTACA 61.205 60.000 5.01 0.00 36.72 2.90
4888 6936 2.858974 CCCCCACTTGTCCCCACT 60.859 66.667 0.00 0.00 0.00 4.00
4963 7011 5.065914 CCCAGATAGATTTGGTACCATGTG 58.934 45.833 17.17 8.25 32.40 3.21
5156 7204 1.109609 TCTGCATGTCATCGCTCTCT 58.890 50.000 0.00 0.00 0.00 3.10
5199 7247 0.830444 TCCTGTGGAGTAACTGCGGT 60.830 55.000 0.00 0.00 0.00 5.68
5291 7423 2.733552 CTCGTTCACTTCATGTGGAGTG 59.266 50.000 14.07 14.07 46.20 3.51
5829 11345 4.527944 GGATTTCTCCCTAGGAACCTTTG 58.472 47.826 11.48 0.00 35.28 2.77
6130 11703 4.709690 AGGACTCGAATCCTCCCC 57.290 61.111 10.24 0.00 46.92 4.81
6140 12001 5.601662 TCCAGCATTTATTCTAAGGACTCG 58.398 41.667 0.00 0.00 0.00 4.18
6255 12116 8.415192 ACACACATGATTTTATTCATTGATGC 57.585 30.769 0.00 0.00 34.09 3.91
6329 12191 6.383436 CCTCTACATCTATGATGATGACCCAT 59.617 42.308 13.63 0.00 44.71 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.