Multiple sequence alignment - TraesCS7A01G409400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G409400 chr7A 100.000 2567 0 0 1 2567 596339821 596342387 0.000000e+00 4741
1 TraesCS7A01G409400 chr7A 93.371 1765 104 8 13 1775 596647661 596649414 0.000000e+00 2599
2 TraesCS7A01G409400 chr7A 93.371 1765 104 8 13 1775 596655726 596657479 0.000000e+00 2599
3 TraesCS7A01G409400 chr7A 91.799 1390 88 15 397 1775 596327893 596329267 0.000000e+00 1912
4 TraesCS7A01G409400 chr7A 91.159 328 27 2 2237 2564 596659309 596659634 6.520000e-121 444
5 TraesCS7A01G409400 chr7A 90.274 329 29 3 2237 2563 596329738 596330065 6.560000e-116 427
6 TraesCS7A01G409400 chr7A 82.134 403 61 8 1773 2169 701130680 701131077 4.090000e-88 335
7 TraesCS7A01G409400 chr7B 92.791 1734 97 14 1 1727 553321393 553323105 0.000000e+00 2484
8 TraesCS7A01G409400 chr7B 89.506 162 16 1 2286 2447 553335010 553335170 1.200000e-48 204
9 TraesCS7A01G409400 chr7B 95.238 126 6 0 2442 2567 553336601 553336726 1.560000e-47 200
10 TraesCS7A01G409400 chr7D 92.009 1777 116 18 7 1778 520281469 520279714 0.000000e+00 2471
11 TraesCS7A01G409400 chr7D 91.615 1777 117 18 7 1778 520273869 520272120 0.000000e+00 2427
12 TraesCS7A01G409400 chr7D 94.479 1431 68 7 349 1778 520344989 520343569 0.000000e+00 2194
13 TraesCS7A01G409400 chr7D 89.750 400 26 12 1774 2169 50655260 50654872 4.930000e-137 497
14 TraesCS7A01G409400 chr7D 94.444 126 7 0 2442 2567 520341518 520341393 7.250000e-46 195
15 TraesCS7A01G409400 chr7D 94.444 108 6 0 222 329 520015278 520015385 1.580000e-37 167
16 TraesCS7A01G409400 chr7D 93.151 73 4 1 2170 2241 520343557 520343485 3.490000e-19 106
17 TraesCS7A01G409400 chr3D 90.428 397 29 6 1773 2169 603090009 603090396 4.900000e-142 514
18 TraesCS7A01G409400 chr5D 90.027 371 33 4 1781 2151 450747847 450748213 6.430000e-131 477
19 TraesCS7A01G409400 chr5D 85.536 401 52 5 1773 2172 72368631 72368236 5.110000e-112 414
20 TraesCS7A01G409400 chr5D 81.683 404 64 8 1773 2174 548259612 548259217 6.850000e-86 327
21 TraesCS7A01G409400 chrUn 91.159 328 27 2 2237 2564 347888184 347888509 6.520000e-121 444
22 TraesCS7A01G409400 chrUn 93.443 122 7 1 2442 2563 457868021 457867901 2.030000e-41 180
23 TraesCS7A01G409400 chrUn 93.443 122 7 1 2442 2563 476884735 476884615 2.030000e-41 180
24 TraesCS7A01G409400 chr1B 84.029 407 54 8 1773 2171 685083915 685083512 5.180000e-102 381
25 TraesCS7A01G409400 chr1B 91.304 115 7 3 2442 2554 114644120 114644007 1.230000e-33 154
26 TraesCS7A01G409400 chr1D 83.791 401 57 7 1773 2171 8005704 8005310 8.670000e-100 374
27 TraesCS7A01G409400 chr6D 81.683 404 65 7 1773 2170 19204883 19205283 6.850000e-86 327
28 TraesCS7A01G409400 chr6D 92.727 110 5 1 2442 2551 373277618 373277724 3.420000e-34 156
29 TraesCS7A01G409400 chr3A 92.453 53 3 1 255 306 520425695 520425747 9.850000e-10 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G409400 chr7A 596339821 596342387 2566 False 4741.000000 4741 100.000000 1 2567 1 chr7A.!!$F1 2566
1 TraesCS7A01G409400 chr7A 596647661 596649414 1753 False 2599.000000 2599 93.371000 13 1775 1 chr7A.!!$F2 1762
2 TraesCS7A01G409400 chr7A 596655726 596659634 3908 False 1521.500000 2599 92.265000 13 2564 2 chr7A.!!$F5 2551
3 TraesCS7A01G409400 chr7A 596327893 596330065 2172 False 1169.500000 1912 91.036500 397 2563 2 chr7A.!!$F4 2166
4 TraesCS7A01G409400 chr7B 553321393 553323105 1712 False 2484.000000 2484 92.791000 1 1727 1 chr7B.!!$F1 1726
5 TraesCS7A01G409400 chr7B 553335010 553336726 1716 False 202.000000 204 92.372000 2286 2567 2 chr7B.!!$F2 281
6 TraesCS7A01G409400 chr7D 520279714 520281469 1755 True 2471.000000 2471 92.009000 7 1778 1 chr7D.!!$R3 1771
7 TraesCS7A01G409400 chr7D 520272120 520273869 1749 True 2427.000000 2427 91.615000 7 1778 1 chr7D.!!$R2 1771
8 TraesCS7A01G409400 chr7D 520341393 520344989 3596 True 831.666667 2194 94.024667 349 2567 3 chr7D.!!$R4 2218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 864 0.03213 GCGTGATCGGGAGCTGATAA 59.968 55.0 0.0 0.0 37.56 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2054 0.171007 ACACACACACACAAAGCTGC 59.829 50.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.586042 GTATCGCGGGCGTTTACGA 60.586 57.895 13.21 0.00 43.02 3.43
94 95 2.489329 CAAGCATTGGATGACCGACTTT 59.511 45.455 0.00 0.00 43.94 2.66
109 110 4.563337 CGACTTTGGTATCACTATCGGA 57.437 45.455 0.00 0.00 0.00 4.55
139 140 5.107182 CGTGTCGACGGATAATACTATGTCT 60.107 44.000 11.62 0.00 42.18 3.41
142 143 6.930722 TGTCGACGGATAATACTATGTCTGTA 59.069 38.462 11.62 0.00 30.74 2.74
181 182 0.314302 GACGCCATGAGCCGTACTAT 59.686 55.000 0.00 0.00 38.78 2.12
182 183 0.750850 ACGCCATGAGCCGTACTATT 59.249 50.000 0.00 0.00 38.78 1.73
233 235 6.199154 CGTACTCACCTGTAAAGCTATCAATG 59.801 42.308 0.00 0.00 0.00 2.82
313 315 8.984891 TTGCTAATGTATCCAACAATTTCTTG 57.015 30.769 0.00 0.00 42.70 3.02
314 316 7.035004 TGCTAATGTATCCAACAATTTCTTGC 58.965 34.615 0.00 0.00 42.70 4.01
322 325 3.320541 CCAACAATTTCTTGCACCCACTA 59.679 43.478 0.00 0.00 35.69 2.74
363 366 7.040686 TGTCATATCACGTAGCGGCATATATAT 60.041 37.037 1.45 0.00 0.00 0.86
364 367 8.448615 GTCATATCACGTAGCGGCATATATATA 58.551 37.037 1.45 0.00 0.00 0.86
446 451 8.526147 TCTTATTGTACTGTTGGAGTAGTTACC 58.474 37.037 0.00 0.00 37.87 2.85
460 465 6.406737 GGAGTAGTTACCTGGACAGATAAACC 60.407 46.154 0.00 0.00 0.00 3.27
490 495 8.902806 TGATCCGTGATTAATTAATTTCAAGCT 58.097 29.630 11.92 1.45 0.00 3.74
503 508 1.445582 CAAGCTCGTACGTGTCCCC 60.446 63.158 16.05 0.00 0.00 4.81
585 590 2.650322 CTACTCCTTCGAGGAAGCTCT 58.350 52.381 0.00 0.00 45.28 4.09
713 720 5.484715 TGCATGTAAGTTTACTCCCACTAC 58.515 41.667 0.00 0.00 34.77 2.73
725 740 2.820787 CTCCCACTACGGATATGGAGTC 59.179 54.545 0.00 0.00 35.69 3.36
731 746 2.176247 ACGGATATGGAGTCACCCTT 57.824 50.000 0.00 0.00 38.00 3.95
849 864 0.032130 GCGTGATCGGGAGCTGATAA 59.968 55.000 0.00 0.00 37.56 1.75
850 865 1.538204 GCGTGATCGGGAGCTGATAAA 60.538 52.381 0.00 0.00 37.56 1.40
851 866 2.128035 CGTGATCGGGAGCTGATAAAC 58.872 52.381 0.00 0.00 28.51 2.01
852 867 2.481276 CGTGATCGGGAGCTGATAAACA 60.481 50.000 0.00 0.00 28.51 2.83
982 997 4.755629 CCATCAACCAATCTCATCTAGCAG 59.244 45.833 0.00 0.00 0.00 4.24
1075 1090 3.026431 GCCAGCGCCACTAGGGTAA 62.026 63.158 2.29 0.00 39.65 2.85
1766 1788 4.652822 ACTCTTCGCTACCTTGGAATTTT 58.347 39.130 0.00 0.00 0.00 1.82
1775 1797 6.198966 CGCTACCTTGGAATTTTAATTCATGC 59.801 38.462 15.04 8.07 45.10 4.06
1778 1800 7.910441 ACCTTGGAATTTTAATTCATGCTTG 57.090 32.000 15.04 0.00 45.10 4.01
1779 1801 6.880529 ACCTTGGAATTTTAATTCATGCTTGG 59.119 34.615 15.04 10.41 45.10 3.61
1780 1802 7.104939 CCTTGGAATTTTAATTCATGCTTGGA 58.895 34.615 15.04 0.00 45.10 3.53
1781 1803 7.064966 CCTTGGAATTTTAATTCATGCTTGGAC 59.935 37.037 15.04 0.00 45.10 4.02
1783 1805 7.098477 TGGAATTTTAATTCATGCTTGGACTG 58.902 34.615 15.04 0.00 45.10 3.51
1784 1806 7.039152 TGGAATTTTAATTCATGCTTGGACTGA 60.039 33.333 15.04 0.00 45.10 3.41
1785 1807 7.983484 GGAATTTTAATTCATGCTTGGACTGAT 59.017 33.333 15.04 0.00 45.10 2.90
1787 1809 8.937634 ATTTTAATTCATGCTTGGACTGATTC 57.062 30.769 0.00 0.00 0.00 2.52
1789 1811 7.707624 TTAATTCATGCTTGGACTGATTCTT 57.292 32.000 0.00 0.00 0.00 2.52
1790 1812 6.600882 AATTCATGCTTGGACTGATTCTTT 57.399 33.333 0.00 0.00 0.00 2.52
1791 1813 7.707624 AATTCATGCTTGGACTGATTCTTTA 57.292 32.000 0.00 0.00 0.00 1.85
1793 1815 7.707624 TTCATGCTTGGACTGATTCTTTAAT 57.292 32.000 0.00 0.00 0.00 1.40
1794 1816 7.092137 TCATGCTTGGACTGATTCTTTAATG 57.908 36.000 0.00 0.00 0.00 1.90
1795 1817 6.660521 TCATGCTTGGACTGATTCTTTAATGT 59.339 34.615 0.00 0.00 0.00 2.71
1796 1818 6.258230 TGCTTGGACTGATTCTTTAATGTG 57.742 37.500 0.00 0.00 0.00 3.21
1797 1819 6.003326 TGCTTGGACTGATTCTTTAATGTGA 58.997 36.000 0.00 0.00 0.00 3.58
1799 1821 7.014134 TGCTTGGACTGATTCTTTAATGTGAAA 59.986 33.333 0.00 0.00 0.00 2.69
1800 1822 7.867403 GCTTGGACTGATTCTTTAATGTGAAAA 59.133 33.333 0.00 0.00 0.00 2.29
1803 1825 7.505585 TGGACTGATTCTTTAATGTGAAAACCT 59.494 33.333 0.00 0.00 0.00 3.50
1804 1826 9.010029 GGACTGATTCTTTAATGTGAAAACCTA 57.990 33.333 0.00 0.00 0.00 3.08
1806 1828 9.793259 ACTGATTCTTTAATGTGAAAACCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
1808 1830 9.793259 TGATTCTTTAATGTGAAAACCTAGACT 57.207 29.630 0.00 0.00 0.00 3.24
1811 1833 8.833231 TCTTTAATGTGAAAACCTAGACTCTG 57.167 34.615 0.00 0.00 0.00 3.35
1814 1836 2.972713 TGTGAAAACCTAGACTCTGGCT 59.027 45.455 0.00 0.00 0.00 4.75
1816 1838 4.141482 TGTGAAAACCTAGACTCTGGCTTT 60.141 41.667 0.00 0.00 0.00 3.51
1818 1840 4.821805 TGAAAACCTAGACTCTGGCTTTTG 59.178 41.667 1.32 0.00 0.00 2.44
1820 1842 4.917906 AACCTAGACTCTGGCTTTTGAT 57.082 40.909 0.00 0.00 0.00 2.57
1821 1843 4.213564 ACCTAGACTCTGGCTTTTGATG 57.786 45.455 0.00 0.00 0.00 3.07
1822 1844 3.054802 ACCTAGACTCTGGCTTTTGATGG 60.055 47.826 0.00 0.00 0.00 3.51
1823 1845 3.054802 CCTAGACTCTGGCTTTTGATGGT 60.055 47.826 0.00 0.00 0.00 3.55
1824 1846 3.064900 AGACTCTGGCTTTTGATGGTC 57.935 47.619 0.00 0.00 0.00 4.02
1825 1847 1.734465 GACTCTGGCTTTTGATGGTCG 59.266 52.381 0.00 0.00 0.00 4.79
1828 1850 1.281867 TCTGGCTTTTGATGGTCGGAT 59.718 47.619 0.00 0.00 0.00 4.18
1829 1851 1.672881 CTGGCTTTTGATGGTCGGATC 59.327 52.381 0.00 0.00 0.00 3.36
1831 1853 0.657840 GCTTTTGATGGTCGGATCCG 59.342 55.000 28.62 28.62 41.35 4.18
1832 1854 1.299541 CTTTTGATGGTCGGATCCGG 58.700 55.000 32.79 15.22 40.25 5.14
1833 1855 0.616371 TTTTGATGGTCGGATCCGGT 59.384 50.000 32.79 16.91 40.25 5.28
1834 1856 0.107897 TTTGATGGTCGGATCCGGTG 60.108 55.000 32.79 6.55 40.25 4.94
1835 1857 0.973496 TTGATGGTCGGATCCGGTGA 60.973 55.000 32.79 17.18 40.25 4.02
1836 1858 1.067582 GATGGTCGGATCCGGTGAC 59.932 63.158 32.79 23.07 40.25 3.67
1855 1877 4.719616 GCGGCGCTTGAACGTCAC 62.720 66.667 26.86 0.00 37.57 3.67
1856 1878 3.036084 CGGCGCTTGAACGTCACT 61.036 61.111 7.64 0.00 37.57 3.41
1857 1879 2.853914 GGCGCTTGAACGTCACTC 59.146 61.111 7.64 0.00 37.66 3.51
1858 1880 2.668280 GGCGCTTGAACGTCACTCC 61.668 63.158 7.64 0.00 37.66 3.85
1859 1881 2.668280 GCGCTTGAACGTCACTCCC 61.668 63.158 0.00 0.00 34.88 4.30
1860 1882 1.006102 CGCTTGAACGTCACTCCCT 60.006 57.895 0.00 0.00 0.00 4.20
1861 1883 0.600255 CGCTTGAACGTCACTCCCTT 60.600 55.000 0.00 0.00 0.00 3.95
1862 1884 1.594331 GCTTGAACGTCACTCCCTTT 58.406 50.000 0.00 0.00 0.00 3.11
1863 1885 1.531578 GCTTGAACGTCACTCCCTTTC 59.468 52.381 0.00 0.00 0.00 2.62
1864 1886 2.807108 GCTTGAACGTCACTCCCTTTCT 60.807 50.000 0.00 0.00 0.00 2.52
1865 1887 2.526304 TGAACGTCACTCCCTTTCTG 57.474 50.000 0.00 0.00 0.00 3.02
1866 1888 2.036387 TGAACGTCACTCCCTTTCTGA 58.964 47.619 0.00 0.00 0.00 3.27
1867 1889 2.432874 TGAACGTCACTCCCTTTCTGAA 59.567 45.455 0.00 0.00 0.00 3.02
1868 1890 2.821991 ACGTCACTCCCTTTCTGAAG 57.178 50.000 0.00 0.00 0.00 3.02
1877 1899 2.977405 CCTTTCTGAAGGCGTTTCTG 57.023 50.000 0.00 0.00 45.59 3.02
1878 1900 2.222027 CCTTTCTGAAGGCGTTTCTGT 58.778 47.619 0.00 0.00 45.59 3.41
1879 1901 2.618709 CCTTTCTGAAGGCGTTTCTGTT 59.381 45.455 0.00 0.00 45.59 3.16
1880 1902 3.548818 CCTTTCTGAAGGCGTTTCTGTTG 60.549 47.826 0.00 0.00 45.59 3.33
1881 1903 2.613026 TCTGAAGGCGTTTCTGTTGA 57.387 45.000 0.00 0.00 36.71 3.18
1882 1904 2.912771 TCTGAAGGCGTTTCTGTTGAA 58.087 42.857 0.00 0.00 36.71 2.69
1883 1905 2.872245 TCTGAAGGCGTTTCTGTTGAAG 59.128 45.455 0.00 0.00 36.71 3.02
1884 1906 2.872245 CTGAAGGCGTTTCTGTTGAAGA 59.128 45.455 0.00 0.00 36.71 2.87
1885 1907 3.275143 TGAAGGCGTTTCTGTTGAAGAA 58.725 40.909 0.00 0.00 43.37 2.52
1886 1908 3.882888 TGAAGGCGTTTCTGTTGAAGAAT 59.117 39.130 0.00 0.00 44.46 2.40
1887 1909 4.024048 TGAAGGCGTTTCTGTTGAAGAATC 60.024 41.667 0.00 0.00 44.46 2.52
1888 1910 3.744660 AGGCGTTTCTGTTGAAGAATCT 58.255 40.909 0.00 0.00 44.46 2.40
1889 1911 3.748568 AGGCGTTTCTGTTGAAGAATCTC 59.251 43.478 0.00 0.00 44.46 2.75
1890 1912 3.423645 GGCGTTTCTGTTGAAGAATCTCG 60.424 47.826 0.00 0.00 44.46 4.04
1891 1913 3.184581 GCGTTTCTGTTGAAGAATCTCGT 59.815 43.478 0.00 0.00 44.46 4.18
1892 1914 4.318831 GCGTTTCTGTTGAAGAATCTCGTT 60.319 41.667 0.00 0.00 44.46 3.85
1893 1915 5.133264 CGTTTCTGTTGAAGAATCTCGTTG 58.867 41.667 0.00 0.00 44.46 4.10
1894 1916 5.276868 CGTTTCTGTTGAAGAATCTCGTTGT 60.277 40.000 0.00 0.00 44.46 3.32
1895 1917 6.487103 GTTTCTGTTGAAGAATCTCGTTGTT 58.513 36.000 0.00 0.00 44.46 2.83
1896 1918 6.677781 TTCTGTTGAAGAATCTCGTTGTTT 57.322 33.333 0.00 0.00 40.09 2.83
1897 1919 6.677781 TCTGTTGAAGAATCTCGTTGTTTT 57.322 33.333 0.00 0.00 29.54 2.43
1898 1920 7.083875 TCTGTTGAAGAATCTCGTTGTTTTT 57.916 32.000 0.00 0.00 29.54 1.94
1899 1921 6.966632 TCTGTTGAAGAATCTCGTTGTTTTTG 59.033 34.615 0.00 0.00 29.54 2.44
1900 1922 6.616947 TGTTGAAGAATCTCGTTGTTTTTGT 58.383 32.000 0.00 0.00 0.00 2.83
1901 1923 6.526325 TGTTGAAGAATCTCGTTGTTTTTGTG 59.474 34.615 0.00 0.00 0.00 3.33
1902 1924 5.577835 TGAAGAATCTCGTTGTTTTTGTGG 58.422 37.500 0.00 0.00 0.00 4.17
1903 1925 5.124776 TGAAGAATCTCGTTGTTTTTGTGGT 59.875 36.000 0.00 0.00 0.00 4.16
1904 1926 4.920376 AGAATCTCGTTGTTTTTGTGGTG 58.080 39.130 0.00 0.00 0.00 4.17
1905 1927 4.398044 AGAATCTCGTTGTTTTTGTGGTGT 59.602 37.500 0.00 0.00 0.00 4.16
1906 1928 3.750639 TCTCGTTGTTTTTGTGGTGTC 57.249 42.857 0.00 0.00 0.00 3.67
1907 1929 3.075148 TCTCGTTGTTTTTGTGGTGTCA 58.925 40.909 0.00 0.00 0.00 3.58
1908 1930 3.692101 TCTCGTTGTTTTTGTGGTGTCAT 59.308 39.130 0.00 0.00 0.00 3.06
1909 1931 3.763902 TCGTTGTTTTTGTGGTGTCATG 58.236 40.909 0.00 0.00 0.00 3.07
1910 1932 3.440522 TCGTTGTTTTTGTGGTGTCATGA 59.559 39.130 0.00 0.00 0.00 3.07
1911 1933 3.790820 CGTTGTTTTTGTGGTGTCATGAG 59.209 43.478 0.00 0.00 0.00 2.90
1912 1934 4.438065 CGTTGTTTTTGTGGTGTCATGAGA 60.438 41.667 0.00 0.00 0.00 3.27
1913 1935 5.591099 GTTGTTTTTGTGGTGTCATGAGAT 58.409 37.500 0.00 0.00 0.00 2.75
1914 1936 6.512578 CGTTGTTTTTGTGGTGTCATGAGATA 60.513 38.462 0.00 0.00 0.00 1.98
1915 1937 6.558771 TGTTTTTGTGGTGTCATGAGATAG 57.441 37.500 0.00 0.00 0.00 2.08
1916 1938 6.061441 TGTTTTTGTGGTGTCATGAGATAGT 58.939 36.000 0.00 0.00 0.00 2.12
1917 1939 6.545666 TGTTTTTGTGGTGTCATGAGATAGTT 59.454 34.615 0.00 0.00 0.00 2.24
1918 1940 6.558771 TTTTGTGGTGTCATGAGATAGTTG 57.441 37.500 0.00 0.00 0.00 3.16
1919 1941 4.206477 TGTGGTGTCATGAGATAGTTGG 57.794 45.455 0.00 0.00 0.00 3.77
1920 1942 3.582647 TGTGGTGTCATGAGATAGTTGGT 59.417 43.478 0.00 0.00 0.00 3.67
1921 1943 3.935203 GTGGTGTCATGAGATAGTTGGTG 59.065 47.826 0.00 0.00 0.00 4.17
1922 1944 2.939103 GGTGTCATGAGATAGTTGGTGC 59.061 50.000 0.00 0.00 0.00 5.01
1923 1945 2.604914 GTGTCATGAGATAGTTGGTGCG 59.395 50.000 0.00 0.00 0.00 5.34
1924 1946 2.205074 GTCATGAGATAGTTGGTGCGG 58.795 52.381 0.00 0.00 0.00 5.69
1925 1947 2.107366 TCATGAGATAGTTGGTGCGGA 58.893 47.619 0.00 0.00 0.00 5.54
1926 1948 2.700371 TCATGAGATAGTTGGTGCGGAT 59.300 45.455 0.00 0.00 0.00 4.18
1927 1949 3.895041 TCATGAGATAGTTGGTGCGGATA 59.105 43.478 0.00 0.00 0.00 2.59
1928 1950 4.528206 TCATGAGATAGTTGGTGCGGATAT 59.472 41.667 0.00 0.00 0.00 1.63
1929 1951 4.257267 TGAGATAGTTGGTGCGGATATG 57.743 45.455 0.00 0.00 0.00 1.78
1930 1952 3.006859 TGAGATAGTTGGTGCGGATATGG 59.993 47.826 0.00 0.00 0.00 2.74
1931 1953 2.972713 AGATAGTTGGTGCGGATATGGT 59.027 45.455 0.00 0.00 0.00 3.55
1932 1954 2.902705 TAGTTGGTGCGGATATGGTC 57.097 50.000 0.00 0.00 0.00 4.02
1933 1955 0.908910 AGTTGGTGCGGATATGGTCA 59.091 50.000 0.00 0.00 0.00 4.02
1934 1956 1.490490 AGTTGGTGCGGATATGGTCAT 59.510 47.619 0.00 0.00 0.00 3.06
1935 1957 2.092429 AGTTGGTGCGGATATGGTCATT 60.092 45.455 0.00 0.00 0.00 2.57
1936 1958 1.965935 TGGTGCGGATATGGTCATTG 58.034 50.000 0.00 0.00 0.00 2.82
1937 1959 1.211703 TGGTGCGGATATGGTCATTGT 59.788 47.619 0.00 0.00 0.00 2.71
1938 1960 2.297701 GGTGCGGATATGGTCATTGTT 58.702 47.619 0.00 0.00 0.00 2.83
1939 1961 2.033299 GGTGCGGATATGGTCATTGTTG 59.967 50.000 0.00 0.00 0.00 3.33
1940 1962 1.675483 TGCGGATATGGTCATTGTTGC 59.325 47.619 0.00 0.00 0.00 4.17
1941 1963 1.675483 GCGGATATGGTCATTGTTGCA 59.325 47.619 0.00 0.00 0.00 4.08
1942 1964 2.287188 GCGGATATGGTCATTGTTGCAG 60.287 50.000 0.00 0.00 0.00 4.41
1943 1965 3.205338 CGGATATGGTCATTGTTGCAGA 58.795 45.455 0.00 0.00 0.00 4.26
1944 1966 3.817084 CGGATATGGTCATTGTTGCAGAT 59.183 43.478 0.00 0.00 0.00 2.90
1945 1967 4.276678 CGGATATGGTCATTGTTGCAGATT 59.723 41.667 0.00 0.00 0.00 2.40
1946 1968 5.526115 GGATATGGTCATTGTTGCAGATTG 58.474 41.667 0.00 0.00 0.00 2.67
1947 1969 5.068198 GGATATGGTCATTGTTGCAGATTGT 59.932 40.000 0.00 0.00 0.00 2.71
1948 1970 3.921119 TGGTCATTGTTGCAGATTGTC 57.079 42.857 0.00 0.00 0.00 3.18
1949 1971 2.226200 TGGTCATTGTTGCAGATTGTCG 59.774 45.455 0.00 0.00 0.00 4.35
1950 1972 2.483877 GGTCATTGTTGCAGATTGTCGA 59.516 45.455 0.00 0.00 0.00 4.20
1951 1973 3.127548 GGTCATTGTTGCAGATTGTCGAT 59.872 43.478 0.00 0.00 0.00 3.59
1952 1974 4.337763 GTCATTGTTGCAGATTGTCGATC 58.662 43.478 0.00 0.00 34.83 3.69
1953 1975 3.062504 TCATTGTTGCAGATTGTCGATCG 59.937 43.478 9.36 9.36 39.85 3.69
1954 1976 0.721154 TGTTGCAGATTGTCGATCGC 59.279 50.000 11.09 6.41 39.85 4.58
1955 1977 0.314578 GTTGCAGATTGTCGATCGCG 60.315 55.000 11.09 0.00 39.85 5.87
1956 1978 1.420641 TTGCAGATTGTCGATCGCGG 61.421 55.000 11.09 0.00 39.85 6.46
1957 1979 1.588932 GCAGATTGTCGATCGCGGA 60.589 57.895 11.09 0.00 39.85 5.54
1958 1980 1.145759 GCAGATTGTCGATCGCGGAA 61.146 55.000 11.09 2.93 39.85 4.30
1959 1981 1.491670 CAGATTGTCGATCGCGGAAT 58.508 50.000 11.09 7.95 39.85 3.01
1960 1982 1.860950 CAGATTGTCGATCGCGGAATT 59.139 47.619 11.09 0.00 39.85 2.17
1961 1983 1.860950 AGATTGTCGATCGCGGAATTG 59.139 47.619 11.09 0.00 39.85 2.32
1962 1984 1.858458 GATTGTCGATCGCGGAATTGA 59.142 47.619 11.09 0.00 38.28 2.57
1963 1985 1.934589 TTGTCGATCGCGGAATTGAT 58.065 45.000 11.09 0.00 38.28 2.57
1964 1986 1.487482 TGTCGATCGCGGAATTGATC 58.513 50.000 11.09 0.00 38.08 2.92
2000 2022 6.509418 TTTTTACTGCTTGCTTAGGTATGG 57.491 37.500 0.00 0.00 0.00 2.74
2002 2024 3.721087 ACTGCTTGCTTAGGTATGGTT 57.279 42.857 0.00 0.00 0.00 3.67
2003 2025 4.034285 ACTGCTTGCTTAGGTATGGTTT 57.966 40.909 0.00 0.00 0.00 3.27
2004 2026 4.407365 ACTGCTTGCTTAGGTATGGTTTT 58.593 39.130 0.00 0.00 0.00 2.43
2005 2027 4.218417 ACTGCTTGCTTAGGTATGGTTTTG 59.782 41.667 0.00 0.00 0.00 2.44
2006 2028 3.509575 TGCTTGCTTAGGTATGGTTTTGG 59.490 43.478 0.00 0.00 0.00 3.28
2007 2029 3.509967 GCTTGCTTAGGTATGGTTTTGGT 59.490 43.478 0.00 0.00 0.00 3.67
2008 2030 4.380550 GCTTGCTTAGGTATGGTTTTGGTC 60.381 45.833 0.00 0.00 0.00 4.02
2009 2031 4.650972 TGCTTAGGTATGGTTTTGGTCT 57.349 40.909 0.00 0.00 0.00 3.85
2010 2032 4.993028 TGCTTAGGTATGGTTTTGGTCTT 58.007 39.130 0.00 0.00 0.00 3.01
2011 2033 6.129414 TGCTTAGGTATGGTTTTGGTCTTA 57.871 37.500 0.00 0.00 0.00 2.10
2012 2034 6.727394 TGCTTAGGTATGGTTTTGGTCTTAT 58.273 36.000 0.00 0.00 0.00 1.73
2013 2035 7.863722 TGCTTAGGTATGGTTTTGGTCTTATA 58.136 34.615 0.00 0.00 0.00 0.98
2014 2036 8.499406 TGCTTAGGTATGGTTTTGGTCTTATAT 58.501 33.333 0.00 0.00 0.00 0.86
2017 2039 9.841295 TTAGGTATGGTTTTGGTCTTATATGAC 57.159 33.333 9.70 9.70 36.31 3.06
2018 2040 8.102484 AGGTATGGTTTTGGTCTTATATGACT 57.898 34.615 15.98 0.14 37.16 3.41
2020 2042 9.185680 GGTATGGTTTTGGTCTTATATGACTTT 57.814 33.333 15.98 0.02 37.16 2.66
2022 2044 8.650143 ATGGTTTTGGTCTTATATGACTTTGT 57.350 30.769 15.98 0.00 37.16 2.83
2023 2045 8.472007 TGGTTTTGGTCTTATATGACTTTGTT 57.528 30.769 15.98 0.00 37.16 2.83
2024 2046 9.575868 TGGTTTTGGTCTTATATGACTTTGTTA 57.424 29.630 15.98 0.00 37.16 2.41
2030 2052 8.682710 TGGTCTTATATGACTTTGTTATTTGCC 58.317 33.333 15.98 0.00 37.16 4.52
2031 2053 7.855904 GGTCTTATATGACTTTGTTATTTGCCG 59.144 37.037 15.98 0.00 37.16 5.69
2032 2054 7.855904 GTCTTATATGACTTTGTTATTTGCCGG 59.144 37.037 10.70 0.00 34.39 6.13
2033 2055 2.715737 TGACTTTGTTATTTGCCGGC 57.284 45.000 22.73 22.73 0.00 6.13
2034 2056 1.957177 TGACTTTGTTATTTGCCGGCA 59.043 42.857 29.03 29.03 0.00 5.69
2035 2057 2.030363 TGACTTTGTTATTTGCCGGCAG 60.030 45.455 30.75 17.00 0.00 4.85
2036 2058 1.336795 ACTTTGTTATTTGCCGGCAGC 60.337 47.619 30.75 17.94 44.14 5.25
2037 2059 0.965439 TTTGTTATTTGCCGGCAGCT 59.035 45.000 30.75 22.39 44.23 4.24
2039 2061 0.965439 TGTTATTTGCCGGCAGCTTT 59.035 45.000 30.75 17.41 44.23 3.51
2040 2062 1.336702 TGTTATTTGCCGGCAGCTTTG 60.337 47.619 30.75 0.00 44.23 2.77
2042 2064 0.243365 TATTTGCCGGCAGCTTTGTG 59.757 50.000 30.75 0.00 44.23 3.33
2044 2066 2.625973 TTTGCCGGCAGCTTTGTGTG 62.626 55.000 30.75 0.00 44.23 3.82
2046 2068 2.332514 CCGGCAGCTTTGTGTGTG 59.667 61.111 0.00 0.00 0.00 3.82
2047 2069 2.480610 CCGGCAGCTTTGTGTGTGT 61.481 57.895 0.00 0.00 0.00 3.72
2048 2070 1.298563 CGGCAGCTTTGTGTGTGTG 60.299 57.895 0.00 0.00 0.00 3.82
2049 2071 1.809207 GGCAGCTTTGTGTGTGTGT 59.191 52.632 0.00 0.00 0.00 3.72
2050 2072 0.526096 GGCAGCTTTGTGTGTGTGTG 60.526 55.000 0.00 0.00 0.00 3.82
2051 2073 0.171007 GCAGCTTTGTGTGTGTGTGT 59.829 50.000 0.00 0.00 0.00 3.72
2052 2074 1.898938 CAGCTTTGTGTGTGTGTGTG 58.101 50.000 0.00 0.00 0.00 3.82
2053 2075 1.199789 CAGCTTTGTGTGTGTGTGTGT 59.800 47.619 0.00 0.00 0.00 3.72
2054 2076 1.199789 AGCTTTGTGTGTGTGTGTGTG 59.800 47.619 0.00 0.00 0.00 3.82
2055 2077 1.068610 GCTTTGTGTGTGTGTGTGTGT 60.069 47.619 0.00 0.00 0.00 3.72
2057 2079 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2058 2080 1.598882 TGTGTGTGTGTGTGTGTGTT 58.401 45.000 0.00 0.00 0.00 3.32
2059 2081 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
2061 2083 0.878416 GTGTGTGTGTGTGTGTTGGT 59.122 50.000 0.00 0.00 0.00 3.67
2062 2084 2.077627 GTGTGTGTGTGTGTGTTGGTA 58.922 47.619 0.00 0.00 0.00 3.25
2063 2085 2.680841 GTGTGTGTGTGTGTGTTGGTAT 59.319 45.455 0.00 0.00 0.00 2.73
2064 2086 3.127895 GTGTGTGTGTGTGTGTTGGTATT 59.872 43.478 0.00 0.00 0.00 1.89
2068 2090 3.129638 GTGTGTGTGTGTTGGTATTGGTT 59.870 43.478 0.00 0.00 0.00 3.67
2069 2091 3.129462 TGTGTGTGTGTTGGTATTGGTTG 59.871 43.478 0.00 0.00 0.00 3.77
2070 2092 3.129638 GTGTGTGTGTTGGTATTGGTTGT 59.870 43.478 0.00 0.00 0.00 3.32
2072 2094 3.129638 GTGTGTGTTGGTATTGGTTGTGT 59.870 43.478 0.00 0.00 0.00 3.72
2074 2096 2.099921 TGTGTTGGTATTGGTTGTGTGC 59.900 45.455 0.00 0.00 0.00 4.57
2075 2097 2.099921 GTGTTGGTATTGGTTGTGTGCA 59.900 45.455 0.00 0.00 0.00 4.57
2076 2098 2.961741 TGTTGGTATTGGTTGTGTGCAT 59.038 40.909 0.00 0.00 0.00 3.96
2077 2099 3.005261 TGTTGGTATTGGTTGTGTGCATC 59.995 43.478 0.00 0.00 0.00 3.91
2078 2100 2.166829 TGGTATTGGTTGTGTGCATCC 58.833 47.619 0.00 0.00 35.54 3.51
2079 2101 2.224992 TGGTATTGGTTGTGTGCATCCT 60.225 45.455 0.00 0.00 35.89 3.24
2081 2103 3.627577 GGTATTGGTTGTGTGCATCCTAG 59.372 47.826 0.00 0.00 35.89 3.02
2082 2104 2.949177 TTGGTTGTGTGCATCCTAGT 57.051 45.000 0.00 0.00 35.89 2.57
2083 2105 2.949177 TGGTTGTGTGCATCCTAGTT 57.051 45.000 0.00 0.00 35.89 2.24
2084 2106 4.359434 TTGGTTGTGTGCATCCTAGTTA 57.641 40.909 0.00 0.00 35.89 2.24
2085 2107 4.568072 TGGTTGTGTGCATCCTAGTTAT 57.432 40.909 0.00 0.00 35.89 1.89
2097 2119 6.266168 CATCCTAGTTATGCAGAGTCTAGG 57.734 45.833 23.76 23.76 45.13 3.02
2098 2120 5.390087 TCCTAGTTATGCAGAGTCTAGGT 57.610 43.478 26.18 0.00 44.50 3.08
2100 2122 4.890581 CCTAGTTATGCAGAGTCTAGGTGT 59.109 45.833 22.50 0.00 41.35 4.16
2101 2123 4.727507 AGTTATGCAGAGTCTAGGTGTG 57.272 45.455 0.00 0.00 0.00 3.82
2102 2124 4.090090 AGTTATGCAGAGTCTAGGTGTGT 58.910 43.478 0.00 0.00 0.00 3.72
2103 2125 4.081972 AGTTATGCAGAGTCTAGGTGTGTG 60.082 45.833 0.00 0.00 0.00 3.82
2104 2126 0.318441 TGCAGAGTCTAGGTGTGTGC 59.682 55.000 0.00 0.00 0.00 4.57
2105 2127 0.605589 GCAGAGTCTAGGTGTGTGCT 59.394 55.000 0.00 0.00 0.00 4.40
2106 2128 1.403514 GCAGAGTCTAGGTGTGTGCTC 60.404 57.143 0.00 0.00 0.00 4.26
2107 2129 1.889170 CAGAGTCTAGGTGTGTGCTCA 59.111 52.381 0.00 0.00 0.00 4.26
2108 2130 2.495270 CAGAGTCTAGGTGTGTGCTCAT 59.505 50.000 0.00 0.00 0.00 2.90
2109 2131 3.056250 CAGAGTCTAGGTGTGTGCTCATT 60.056 47.826 0.00 0.00 0.00 2.57
2110 2132 3.580458 AGAGTCTAGGTGTGTGCTCATTT 59.420 43.478 0.00 0.00 0.00 2.32
2112 2134 4.718961 AGTCTAGGTGTGTGCTCATTTTT 58.281 39.130 0.00 0.00 0.00 1.94
2113 2135 5.865085 AGTCTAGGTGTGTGCTCATTTTTA 58.135 37.500 0.00 0.00 0.00 1.52
2114 2136 6.476378 AGTCTAGGTGTGTGCTCATTTTTAT 58.524 36.000 0.00 0.00 0.00 1.40
2117 2139 5.789643 AGGTGTGTGCTCATTTTTATTGT 57.210 34.783 0.00 0.00 0.00 2.71
2118 2140 6.892658 AGGTGTGTGCTCATTTTTATTGTA 57.107 33.333 0.00 0.00 0.00 2.41
2119 2141 7.466746 AGGTGTGTGCTCATTTTTATTGTAT 57.533 32.000 0.00 0.00 0.00 2.29
2120 2142 7.895759 AGGTGTGTGCTCATTTTTATTGTATT 58.104 30.769 0.00 0.00 0.00 1.89
2121 2143 8.028938 AGGTGTGTGCTCATTTTTATTGTATTC 58.971 33.333 0.00 0.00 0.00 1.75
2122 2144 7.812191 GGTGTGTGCTCATTTTTATTGTATTCA 59.188 33.333 0.00 0.00 0.00 2.57
2123 2145 8.638565 GTGTGTGCTCATTTTTATTGTATTCAC 58.361 33.333 0.00 0.00 0.00 3.18
2124 2146 8.575589 TGTGTGCTCATTTTTATTGTATTCACT 58.424 29.630 0.00 0.00 0.00 3.41
2125 2147 9.410556 GTGTGCTCATTTTTATTGTATTCACTT 57.589 29.630 0.00 0.00 0.00 3.16
2140 2162 7.884257 TGTATTCACTTGATGCTTCATTTTGA 58.116 30.769 2.75 4.09 0.00 2.69
2141 2163 8.024865 TGTATTCACTTGATGCTTCATTTTGAG 58.975 33.333 2.75 0.28 0.00 3.02
2142 2164 6.395426 TTCACTTGATGCTTCATTTTGAGT 57.605 33.333 2.75 0.90 0.00 3.41
2143 2165 7.509141 TTCACTTGATGCTTCATTTTGAGTA 57.491 32.000 2.75 0.00 0.00 2.59
2144 2166 7.509141 TCACTTGATGCTTCATTTTGAGTAA 57.491 32.000 2.75 0.00 0.00 2.24
2145 2167 8.114331 TCACTTGATGCTTCATTTTGAGTAAT 57.886 30.769 2.75 0.00 0.00 1.89
2146 2168 9.230122 TCACTTGATGCTTCATTTTGAGTAATA 57.770 29.630 2.75 0.00 0.00 0.98
2147 2169 9.844790 CACTTGATGCTTCATTTTGAGTAATAA 57.155 29.630 2.75 0.00 0.00 1.40
2195 3141 6.279513 TCAGACCAACAAATGAAGTGTTTT 57.720 33.333 0.00 0.00 37.09 2.43
2280 3835 5.643777 ACAGCTAAACAAAGAATATGACGCT 59.356 36.000 0.00 0.00 0.00 5.07
2292 3847 8.812147 AAGAATATGACGCTGTAATATTTCGA 57.188 30.769 10.64 0.00 31.71 3.71
2298 3853 3.307782 ACGCTGTAATATTTCGAAACGGG 59.692 43.478 13.81 8.15 0.00 5.28
2300 3855 3.872771 GCTGTAATATTTCGAAACGGGGA 59.127 43.478 13.81 0.00 0.00 4.81
2368 3925 1.925455 TGGGAAGGAAGGCCTCAGG 60.925 63.158 5.23 0.00 46.28 3.86
2413 3970 2.569853 TGATGTTTTCTCCGCTCCCTTA 59.430 45.455 0.00 0.00 0.00 2.69
2432 3989 0.405585 ACTTGGGCTAGGTTGTGCAT 59.594 50.000 0.00 0.00 0.00 3.96
2461 5473 6.129300 GCACGTACAAATACAAATTGTTCACC 60.129 38.462 3.17 0.00 41.11 4.02
2463 5475 7.432545 CACGTACAAATACAAATTGTTCACCAA 59.567 33.333 3.17 0.00 41.11 3.67
2551 5563 1.192146 TATGCCCCCTAGCCGTGATC 61.192 60.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.828644 CAAAAACAATGGAGTTCATTCAAATGA 58.171 29.630 1.30 1.30 43.70 2.57
72 73 1.003580 AGTCGGTCATCCAATGCTTGT 59.996 47.619 0.00 0.00 0.00 3.16
74 75 2.489329 CAAAGTCGGTCATCCAATGCTT 59.511 45.455 0.00 0.00 0.00 3.91
78 79 2.879103 ACCAAAGTCGGTCATCCAAT 57.121 45.000 0.00 0.00 32.11 3.16
90 91 4.341520 GTCCTCCGATAGTGATACCAAAGT 59.658 45.833 0.00 0.00 0.00 2.66
94 95 2.501261 CGTCCTCCGATAGTGATACCA 58.499 52.381 0.00 0.00 39.56 3.25
139 140 2.610976 CCAAACGTCGGTCCTCAATACA 60.611 50.000 0.00 0.00 0.00 2.29
142 143 0.682852 TCCAAACGTCGGTCCTCAAT 59.317 50.000 0.00 0.00 0.00 2.57
170 171 4.342772 CATGCAAACAAATAGTACGGCTC 58.657 43.478 0.00 0.00 0.00 4.70
181 182 4.511527 ACACAAACATCCATGCAAACAAA 58.488 34.783 0.00 0.00 0.00 2.83
182 183 4.134379 ACACAAACATCCATGCAAACAA 57.866 36.364 0.00 0.00 0.00 2.83
322 325 3.525800 ATGACAAGGCAAAACTACCCT 57.474 42.857 0.00 0.00 0.00 4.34
446 451 4.752101 GGATCAATCGGTTTATCTGTCCAG 59.248 45.833 2.78 0.00 0.00 3.86
460 465 9.877137 TGAAATTAATTAATCACGGATCAATCG 57.123 29.630 11.08 0.00 0.00 3.34
490 495 1.750399 GCTAGGGGGACACGTACGA 60.750 63.158 24.41 0.00 0.00 3.43
503 508 2.219458 CATGTTCCATCTGCAGCTAGG 58.781 52.381 9.47 10.63 0.00 3.02
521 526 3.877559 TCAATGGAACGATCTTCTGCAT 58.122 40.909 0.00 0.00 0.00 3.96
585 590 4.646945 TGTTGTGCAAAGTTAATTGGAGGA 59.353 37.500 0.00 0.00 30.90 3.71
611 616 9.388506 AGATTTGACTTGAGTTAATGGATAGTG 57.611 33.333 0.00 0.00 0.00 2.74
648 654 5.639082 TCGTGCCATGCATATATTGACTTAG 59.361 40.000 0.00 0.00 41.91 2.18
713 720 2.039418 TCAAGGGTGACTCCATATCCG 58.961 52.381 0.00 0.00 38.11 4.18
725 740 1.615392 CCTTTGCTTCCTTCAAGGGTG 59.385 52.381 2.75 0.00 36.35 4.61
849 864 6.039382 GTGGGTTCTTTTCTATGTCAAGTGTT 59.961 38.462 0.00 0.00 0.00 3.32
850 865 5.531287 GTGGGTTCTTTTCTATGTCAAGTGT 59.469 40.000 0.00 0.00 0.00 3.55
851 866 5.765182 AGTGGGTTCTTTTCTATGTCAAGTG 59.235 40.000 0.00 0.00 0.00 3.16
852 867 5.941788 AGTGGGTTCTTTTCTATGTCAAGT 58.058 37.500 0.00 0.00 0.00 3.16
880 895 2.047274 GCCGTGCTTGTGCCTCTA 60.047 61.111 0.00 0.00 38.71 2.43
881 896 3.890936 GAGCCGTGCTTGTGCCTCT 62.891 63.158 0.00 0.00 39.88 3.69
882 897 3.426568 GAGCCGTGCTTGTGCCTC 61.427 66.667 0.00 0.00 39.88 4.70
982 997 2.744202 CCATTGTGAGAGTGTAGCCAAC 59.256 50.000 0.00 0.00 0.00 3.77
1075 1090 1.000163 CGTGGAGCTGGCGTATCTAAT 60.000 52.381 0.00 0.00 0.00 1.73
1254 1269 4.408821 GACCCAGCGCCATGTCCA 62.409 66.667 2.29 0.00 0.00 4.02
1356 1371 3.075005 GCCTGTCCTCCACCGCTA 61.075 66.667 0.00 0.00 0.00 4.26
1446 1461 3.282885 TGCATTCGCATATTGGTACCAA 58.717 40.909 28.95 28.95 45.36 3.67
1627 1646 2.676463 GCCACAAGGTGCAAACAGAAAA 60.676 45.455 0.00 0.00 37.19 2.29
1698 1717 7.885399 GCCCTTTATTGATTCATCCATACTACT 59.115 37.037 0.00 0.00 0.00 2.57
1699 1718 7.121315 GGCCCTTTATTGATTCATCCATACTAC 59.879 40.741 0.00 0.00 0.00 2.73
1766 1788 7.707624 AAAGAATCAGTCCAAGCATGAATTA 57.292 32.000 0.00 0.00 0.00 1.40
1775 1797 9.185192 GTTTTCACATTAAAGAATCAGTCCAAG 57.815 33.333 0.00 0.00 0.00 3.61
1778 1800 7.886338 AGGTTTTCACATTAAAGAATCAGTCC 58.114 34.615 0.00 0.00 0.00 3.85
1780 1802 9.793259 TCTAGGTTTTCACATTAAAGAATCAGT 57.207 29.630 0.00 0.00 0.00 3.41
1785 1807 9.273016 CAGAGTCTAGGTTTTCACATTAAAGAA 57.727 33.333 0.00 0.00 0.00 2.52
1787 1809 7.361286 GCCAGAGTCTAGGTTTTCACATTAAAG 60.361 40.741 0.00 0.00 0.00 1.85
1789 1811 5.938125 GCCAGAGTCTAGGTTTTCACATTAA 59.062 40.000 0.00 0.00 0.00 1.40
1790 1812 5.248477 AGCCAGAGTCTAGGTTTTCACATTA 59.752 40.000 0.00 0.00 0.00 1.90
1791 1813 4.042187 AGCCAGAGTCTAGGTTTTCACATT 59.958 41.667 0.00 0.00 0.00 2.71
1793 1815 2.972713 AGCCAGAGTCTAGGTTTTCACA 59.027 45.455 0.00 0.00 0.00 3.58
1794 1816 3.686916 AGCCAGAGTCTAGGTTTTCAC 57.313 47.619 0.00 0.00 0.00 3.18
1795 1817 4.706842 AAAGCCAGAGTCTAGGTTTTCA 57.293 40.909 9.55 0.00 33.79 2.69
1796 1818 5.063880 TCAAAAGCCAGAGTCTAGGTTTTC 58.936 41.667 20.77 2.11 37.34 2.29
1797 1819 5.048846 TCAAAAGCCAGAGTCTAGGTTTT 57.951 39.130 18.74 18.74 39.56 2.43
1799 1821 4.566488 CCATCAAAAGCCAGAGTCTAGGTT 60.566 45.833 0.00 0.00 0.00 3.50
1800 1822 3.054802 CCATCAAAAGCCAGAGTCTAGGT 60.055 47.826 0.00 0.00 0.00 3.08
1803 1825 3.368427 CGACCATCAAAAGCCAGAGTCTA 60.368 47.826 0.00 0.00 0.00 2.59
1804 1826 2.613977 CGACCATCAAAAGCCAGAGTCT 60.614 50.000 0.00 0.00 0.00 3.24
1806 1828 1.611673 CCGACCATCAAAAGCCAGAGT 60.612 52.381 0.00 0.00 0.00 3.24
1807 1829 1.089920 CCGACCATCAAAAGCCAGAG 58.910 55.000 0.00 0.00 0.00 3.35
1808 1830 0.690192 TCCGACCATCAAAAGCCAGA 59.310 50.000 0.00 0.00 0.00 3.86
1809 1831 1.672881 GATCCGACCATCAAAAGCCAG 59.327 52.381 0.00 0.00 0.00 4.85
1811 1833 1.025041 GGATCCGACCATCAAAAGCC 58.975 55.000 0.00 0.00 0.00 4.35
1814 1836 0.616371 ACCGGATCCGACCATCAAAA 59.384 50.000 35.42 0.00 42.83 2.44
1816 1838 0.973496 TCACCGGATCCGACCATCAA 60.973 55.000 35.42 10.17 42.83 2.57
1818 1840 1.067582 GTCACCGGATCCGACCATC 59.932 63.158 35.42 16.53 42.83 3.51
1820 1842 3.445687 CGTCACCGGATCCGACCA 61.446 66.667 35.42 14.93 42.83 4.02
1838 1860 4.719616 GTGACGTTCAAGCGCCGC 62.720 66.667 2.29 0.00 34.88 6.53
1839 1861 3.000080 GAGTGACGTTCAAGCGCCG 62.000 63.158 2.29 1.74 34.88 6.46
1840 1862 2.668280 GGAGTGACGTTCAAGCGCC 61.668 63.158 2.29 0.00 34.88 6.53
1841 1863 2.668280 GGGAGTGACGTTCAAGCGC 61.668 63.158 0.00 0.00 34.88 5.92
1842 1864 0.600255 AAGGGAGTGACGTTCAAGCG 60.600 55.000 0.00 0.00 37.94 4.68
1843 1865 1.531578 GAAAGGGAGTGACGTTCAAGC 59.468 52.381 0.00 0.00 0.00 4.01
1844 1866 2.802816 CAGAAAGGGAGTGACGTTCAAG 59.197 50.000 0.00 0.00 0.00 3.02
1845 1867 2.432874 TCAGAAAGGGAGTGACGTTCAA 59.567 45.455 0.00 0.00 0.00 2.69
1846 1868 2.036387 TCAGAAAGGGAGTGACGTTCA 58.964 47.619 0.00 0.00 0.00 3.18
1847 1869 2.814280 TCAGAAAGGGAGTGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
1848 1870 3.113260 CTTCAGAAAGGGAGTGACGTT 57.887 47.619 0.00 0.00 0.00 3.99
1849 1871 2.821991 CTTCAGAAAGGGAGTGACGT 57.178 50.000 0.00 0.00 0.00 4.34
1859 1881 3.312421 TCAACAGAAACGCCTTCAGAAAG 59.688 43.478 1.17 0.00 36.40 2.62
1860 1882 3.275143 TCAACAGAAACGCCTTCAGAAA 58.725 40.909 1.17 0.00 36.40 2.52
1861 1883 2.912771 TCAACAGAAACGCCTTCAGAA 58.087 42.857 1.17 0.00 36.40 3.02
1862 1884 2.613026 TCAACAGAAACGCCTTCAGA 57.387 45.000 1.17 0.00 36.40 3.27
1863 1885 2.872245 TCTTCAACAGAAACGCCTTCAG 59.128 45.455 1.17 0.00 36.40 3.02
1864 1886 2.912771 TCTTCAACAGAAACGCCTTCA 58.087 42.857 1.17 0.00 36.40 3.02
1865 1887 3.963383 TTCTTCAACAGAAACGCCTTC 57.037 42.857 0.00 0.00 38.68 3.46
1866 1888 4.137543 AGATTCTTCAACAGAAACGCCTT 58.862 39.130 0.00 0.00 45.06 4.35
1867 1889 3.744660 AGATTCTTCAACAGAAACGCCT 58.255 40.909 0.00 0.00 45.06 5.52
1868 1890 3.423645 CGAGATTCTTCAACAGAAACGCC 60.424 47.826 0.00 0.00 45.06 5.68
1869 1891 3.184581 ACGAGATTCTTCAACAGAAACGC 59.815 43.478 0.00 0.00 45.06 4.84
1870 1892 4.974103 ACGAGATTCTTCAACAGAAACG 57.026 40.909 0.00 0.00 45.06 3.60
1871 1893 6.049263 ACAACGAGATTCTTCAACAGAAAC 57.951 37.500 0.00 0.00 45.06 2.78
1872 1894 6.677781 AACAACGAGATTCTTCAACAGAAA 57.322 33.333 0.00 0.00 45.06 2.52
1873 1895 6.677781 AAACAACGAGATTCTTCAACAGAA 57.322 33.333 0.00 0.00 46.01 3.02
1874 1896 6.677781 AAAACAACGAGATTCTTCAACAGA 57.322 33.333 0.00 0.00 0.00 3.41
1875 1897 6.747280 ACAAAAACAACGAGATTCTTCAACAG 59.253 34.615 0.00 0.00 0.00 3.16
1876 1898 6.526325 CACAAAAACAACGAGATTCTTCAACA 59.474 34.615 0.00 0.00 0.00 3.33
1877 1899 6.020678 CCACAAAAACAACGAGATTCTTCAAC 60.021 38.462 0.00 0.00 0.00 3.18
1878 1900 6.033341 CCACAAAAACAACGAGATTCTTCAA 58.967 36.000 0.00 0.00 0.00 2.69
1879 1901 5.124776 ACCACAAAAACAACGAGATTCTTCA 59.875 36.000 0.00 0.00 0.00 3.02
1880 1902 5.455525 CACCACAAAAACAACGAGATTCTTC 59.544 40.000 0.00 0.00 0.00 2.87
1881 1903 5.105917 ACACCACAAAAACAACGAGATTCTT 60.106 36.000 0.00 0.00 0.00 2.52
1882 1904 4.398044 ACACCACAAAAACAACGAGATTCT 59.602 37.500 0.00 0.00 0.00 2.40
1883 1905 4.668289 ACACCACAAAAACAACGAGATTC 58.332 39.130 0.00 0.00 0.00 2.52
1884 1906 4.156922 TGACACCACAAAAACAACGAGATT 59.843 37.500 0.00 0.00 0.00 2.40
1885 1907 3.692101 TGACACCACAAAAACAACGAGAT 59.308 39.130 0.00 0.00 0.00 2.75
1886 1908 3.075148 TGACACCACAAAAACAACGAGA 58.925 40.909 0.00 0.00 0.00 4.04
1887 1909 3.479505 TGACACCACAAAAACAACGAG 57.520 42.857 0.00 0.00 0.00 4.18
1888 1910 3.440522 TCATGACACCACAAAAACAACGA 59.559 39.130 0.00 0.00 0.00 3.85
1889 1911 3.763902 TCATGACACCACAAAAACAACG 58.236 40.909 0.00 0.00 0.00 4.10
1890 1912 4.992688 TCTCATGACACCACAAAAACAAC 58.007 39.130 0.00 0.00 0.00 3.32
1891 1913 5.850557 ATCTCATGACACCACAAAAACAA 57.149 34.783 0.00 0.00 0.00 2.83
1892 1914 6.061441 ACTATCTCATGACACCACAAAAACA 58.939 36.000 0.00 0.00 0.00 2.83
1893 1915 6.560253 ACTATCTCATGACACCACAAAAAC 57.440 37.500 0.00 0.00 0.00 2.43
1894 1916 6.016360 CCAACTATCTCATGACACCACAAAAA 60.016 38.462 0.00 0.00 0.00 1.94
1895 1917 5.473162 CCAACTATCTCATGACACCACAAAA 59.527 40.000 0.00 0.00 0.00 2.44
1896 1918 5.003160 CCAACTATCTCATGACACCACAAA 58.997 41.667 0.00 0.00 0.00 2.83
1897 1919 4.041567 ACCAACTATCTCATGACACCACAA 59.958 41.667 0.00 0.00 0.00 3.33
1898 1920 3.582647 ACCAACTATCTCATGACACCACA 59.417 43.478 0.00 0.00 0.00 4.17
1899 1921 3.935203 CACCAACTATCTCATGACACCAC 59.065 47.826 0.00 0.00 0.00 4.16
1900 1922 3.619733 GCACCAACTATCTCATGACACCA 60.620 47.826 0.00 0.00 0.00 4.17
1901 1923 2.939103 GCACCAACTATCTCATGACACC 59.061 50.000 0.00 0.00 0.00 4.16
1902 1924 2.604914 CGCACCAACTATCTCATGACAC 59.395 50.000 0.00 0.00 0.00 3.67
1903 1925 2.418609 CCGCACCAACTATCTCATGACA 60.419 50.000 0.00 0.00 0.00 3.58
1904 1926 2.159099 TCCGCACCAACTATCTCATGAC 60.159 50.000 0.00 0.00 0.00 3.06
1905 1927 2.107366 TCCGCACCAACTATCTCATGA 58.893 47.619 0.00 0.00 0.00 3.07
1906 1928 2.602257 TCCGCACCAACTATCTCATG 57.398 50.000 0.00 0.00 0.00 3.07
1907 1929 4.323028 CCATATCCGCACCAACTATCTCAT 60.323 45.833 0.00 0.00 0.00 2.90
1908 1930 3.006859 CCATATCCGCACCAACTATCTCA 59.993 47.826 0.00 0.00 0.00 3.27
1909 1931 3.006967 ACCATATCCGCACCAACTATCTC 59.993 47.826 0.00 0.00 0.00 2.75
1910 1932 2.972713 ACCATATCCGCACCAACTATCT 59.027 45.455 0.00 0.00 0.00 1.98
1911 1933 3.244078 TGACCATATCCGCACCAACTATC 60.244 47.826 0.00 0.00 0.00 2.08
1912 1934 2.703536 TGACCATATCCGCACCAACTAT 59.296 45.455 0.00 0.00 0.00 2.12
1913 1935 2.112190 TGACCATATCCGCACCAACTA 58.888 47.619 0.00 0.00 0.00 2.24
1914 1936 0.908910 TGACCATATCCGCACCAACT 59.091 50.000 0.00 0.00 0.00 3.16
1915 1937 1.967319 ATGACCATATCCGCACCAAC 58.033 50.000 0.00 0.00 0.00 3.77
1916 1938 2.296792 CAATGACCATATCCGCACCAA 58.703 47.619 0.00 0.00 0.00 3.67
1917 1939 1.211703 ACAATGACCATATCCGCACCA 59.788 47.619 0.00 0.00 0.00 4.17
1918 1940 1.967319 ACAATGACCATATCCGCACC 58.033 50.000 0.00 0.00 0.00 5.01
1919 1941 2.541588 GCAACAATGACCATATCCGCAC 60.542 50.000 0.00 0.00 0.00 5.34
1920 1942 1.675483 GCAACAATGACCATATCCGCA 59.325 47.619 0.00 0.00 0.00 5.69
1921 1943 1.675483 TGCAACAATGACCATATCCGC 59.325 47.619 0.00 0.00 0.00 5.54
1922 1944 3.205338 TCTGCAACAATGACCATATCCG 58.795 45.455 0.00 0.00 0.00 4.18
1923 1945 5.068198 ACAATCTGCAACAATGACCATATCC 59.932 40.000 0.00 0.00 0.00 2.59
1924 1946 6.140303 ACAATCTGCAACAATGACCATATC 57.860 37.500 0.00 0.00 0.00 1.63
1925 1947 5.220912 CGACAATCTGCAACAATGACCATAT 60.221 40.000 0.00 0.00 0.00 1.78
1926 1948 4.094739 CGACAATCTGCAACAATGACCATA 59.905 41.667 0.00 0.00 0.00 2.74
1927 1949 3.119743 CGACAATCTGCAACAATGACCAT 60.120 43.478 0.00 0.00 0.00 3.55
1928 1950 2.226200 CGACAATCTGCAACAATGACCA 59.774 45.455 0.00 0.00 0.00 4.02
1929 1951 2.483877 TCGACAATCTGCAACAATGACC 59.516 45.455 0.00 0.00 0.00 4.02
1930 1952 3.811722 TCGACAATCTGCAACAATGAC 57.188 42.857 0.00 0.00 0.00 3.06
1931 1953 3.062504 CGATCGACAATCTGCAACAATGA 59.937 43.478 10.26 0.00 31.68 2.57
1932 1954 3.348309 CGATCGACAATCTGCAACAATG 58.652 45.455 10.26 0.00 31.68 2.82
1933 1955 2.223112 GCGATCGACAATCTGCAACAAT 60.223 45.455 21.57 0.00 35.41 2.71
1934 1956 1.128507 GCGATCGACAATCTGCAACAA 59.871 47.619 21.57 0.00 35.41 2.83
1935 1957 0.721154 GCGATCGACAATCTGCAACA 59.279 50.000 21.57 0.00 35.41 3.33
1936 1958 0.314578 CGCGATCGACAATCTGCAAC 60.315 55.000 21.57 0.00 38.10 4.17
1937 1959 1.420641 CCGCGATCGACAATCTGCAA 61.421 55.000 21.57 0.00 38.10 4.08
1938 1960 1.878069 CCGCGATCGACAATCTGCA 60.878 57.895 21.57 0.00 38.10 4.41
1939 1961 1.145759 TTCCGCGATCGACAATCTGC 61.146 55.000 21.57 0.00 38.10 4.26
1940 1962 1.491670 ATTCCGCGATCGACAATCTG 58.508 50.000 21.57 0.00 38.10 2.90
1941 1963 1.860950 CAATTCCGCGATCGACAATCT 59.139 47.619 21.57 0.00 38.10 2.40
1942 1964 1.858458 TCAATTCCGCGATCGACAATC 59.142 47.619 21.57 0.00 38.10 2.67
1943 1965 1.934589 TCAATTCCGCGATCGACAAT 58.065 45.000 21.57 9.90 38.10 2.71
1944 1966 1.858458 GATCAATTCCGCGATCGACAA 59.142 47.619 21.57 7.80 38.10 3.18
1945 1967 1.487482 GATCAATTCCGCGATCGACA 58.513 50.000 21.57 0.00 38.10 4.35
1954 1976 0.940126 CCCAGAAGCGATCAATTCCG 59.060 55.000 0.00 0.00 0.00 4.30
1955 1977 2.044123 ACCCAGAAGCGATCAATTCC 57.956 50.000 0.00 0.00 0.00 3.01
1956 1978 4.440839 AAAACCCAGAAGCGATCAATTC 57.559 40.909 0.00 0.00 0.00 2.17
1957 1979 4.871933 AAAAACCCAGAAGCGATCAATT 57.128 36.364 0.00 0.00 0.00 2.32
1984 2006 3.509575 CCAAAACCATACCTAAGCAAGCA 59.490 43.478 0.00 0.00 0.00 3.91
1985 2007 3.509967 ACCAAAACCATACCTAAGCAAGC 59.490 43.478 0.00 0.00 0.00 4.01
1986 2008 5.010282 AGACCAAAACCATACCTAAGCAAG 58.990 41.667 0.00 0.00 0.00 4.01
1987 2009 4.993028 AGACCAAAACCATACCTAAGCAA 58.007 39.130 0.00 0.00 0.00 3.91
1988 2010 4.650972 AGACCAAAACCATACCTAAGCA 57.349 40.909 0.00 0.00 0.00 3.91
1989 2011 8.784043 CATATAAGACCAAAACCATACCTAAGC 58.216 37.037 0.00 0.00 0.00 3.09
1991 2013 9.841295 GTCATATAAGACCAAAACCATACCTAA 57.159 33.333 0.00 0.00 32.36 2.69
1993 2015 8.102484 AGTCATATAAGACCAAAACCATACCT 57.898 34.615 4.52 0.00 39.34 3.08
1994 2016 8.747538 AAGTCATATAAGACCAAAACCATACC 57.252 34.615 4.52 0.00 39.34 2.73
1996 2018 9.747898 ACAAAGTCATATAAGACCAAAACCATA 57.252 29.630 4.52 0.00 39.34 2.74
1997 2019 8.650143 ACAAAGTCATATAAGACCAAAACCAT 57.350 30.769 4.52 0.00 39.34 3.55
1998 2020 8.472007 AACAAAGTCATATAAGACCAAAACCA 57.528 30.769 4.52 0.00 39.34 3.67
2004 2026 8.682710 GGCAAATAACAAAGTCATATAAGACCA 58.317 33.333 4.52 0.00 39.34 4.02
2005 2027 7.855904 CGGCAAATAACAAAGTCATATAAGACC 59.144 37.037 4.52 0.00 39.34 3.85
2006 2028 7.855904 CCGGCAAATAACAAAGTCATATAAGAC 59.144 37.037 0.00 0.00 38.81 3.01
2007 2029 7.468084 GCCGGCAAATAACAAAGTCATATAAGA 60.468 37.037 24.80 0.00 0.00 2.10
2008 2030 6.636850 GCCGGCAAATAACAAAGTCATATAAG 59.363 38.462 24.80 0.00 0.00 1.73
2009 2031 6.095580 TGCCGGCAAATAACAAAGTCATATAA 59.904 34.615 30.74 0.00 0.00 0.98
2010 2032 5.590663 TGCCGGCAAATAACAAAGTCATATA 59.409 36.000 30.74 0.00 0.00 0.86
2011 2033 4.400884 TGCCGGCAAATAACAAAGTCATAT 59.599 37.500 30.74 0.00 0.00 1.78
2012 2034 3.759086 TGCCGGCAAATAACAAAGTCATA 59.241 39.130 30.74 0.00 0.00 2.15
2013 2035 2.560542 TGCCGGCAAATAACAAAGTCAT 59.439 40.909 30.74 0.00 0.00 3.06
2014 2036 1.957177 TGCCGGCAAATAACAAAGTCA 59.043 42.857 30.74 0.00 0.00 3.41
2016 2038 1.336795 GCTGCCGGCAAATAACAAAGT 60.337 47.619 32.09 0.00 41.35 2.66
2017 2039 1.067635 AGCTGCCGGCAAATAACAAAG 60.068 47.619 32.09 16.38 44.79 2.77
2018 2040 0.965439 AGCTGCCGGCAAATAACAAA 59.035 45.000 32.09 3.44 44.79 2.83
2020 2042 0.965439 AAAGCTGCCGGCAAATAACA 59.035 45.000 32.09 5.20 44.79 2.41
2021 2043 1.336795 ACAAAGCTGCCGGCAAATAAC 60.337 47.619 32.09 16.95 44.79 1.89
2022 2044 0.965439 ACAAAGCTGCCGGCAAATAA 59.035 45.000 32.09 6.96 44.79 1.40
2023 2045 0.243365 CACAAAGCTGCCGGCAAATA 59.757 50.000 32.09 7.42 44.79 1.40
2024 2046 1.005867 CACAAAGCTGCCGGCAAAT 60.006 52.632 32.09 19.22 44.79 2.32
2025 2047 2.416678 CACAAAGCTGCCGGCAAA 59.583 55.556 32.09 8.76 44.79 3.68
2027 2049 3.594775 CACACAAAGCTGCCGGCA 61.595 61.111 30.59 30.59 44.79 5.69
2028 2050 3.595758 ACACACAAAGCTGCCGGC 61.596 61.111 22.73 22.73 42.19 6.13
2029 2051 2.332514 CACACACAAAGCTGCCGG 59.667 61.111 0.00 0.00 0.00 6.13
2030 2052 1.298563 CACACACACAAAGCTGCCG 60.299 57.895 0.00 0.00 0.00 5.69
2031 2053 0.526096 CACACACACACAAAGCTGCC 60.526 55.000 0.00 0.00 0.00 4.85
2032 2054 0.171007 ACACACACACACAAAGCTGC 59.829 50.000 0.00 0.00 0.00 5.25
2033 2055 1.199789 ACACACACACACACAAAGCTG 59.800 47.619 0.00 0.00 0.00 4.24
2034 2056 1.199789 CACACACACACACACAAAGCT 59.800 47.619 0.00 0.00 0.00 3.74
2035 2057 1.068610 ACACACACACACACACAAAGC 60.069 47.619 0.00 0.00 0.00 3.51
2036 2058 2.031245 ACACACACACACACACACAAAG 60.031 45.455 0.00 0.00 0.00 2.77
2037 2059 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
2039 2061 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
2040 2062 1.400888 CCAACACACACACACACACAC 60.401 52.381 0.00 0.00 0.00 3.82
2042 2064 0.878416 ACCAACACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
2044 2066 3.488384 CCAATACCAACACACACACACAC 60.488 47.826 0.00 0.00 0.00 3.82
2046 2068 2.685897 ACCAATACCAACACACACACAC 59.314 45.455 0.00 0.00 0.00 3.82
2047 2069 3.006112 ACCAATACCAACACACACACA 57.994 42.857 0.00 0.00 0.00 3.72
2048 2070 3.129638 ACAACCAATACCAACACACACAC 59.870 43.478 0.00 0.00 0.00 3.82
2049 2071 3.129462 CACAACCAATACCAACACACACA 59.871 43.478 0.00 0.00 0.00 3.72
2050 2072 3.129638 ACACAACCAATACCAACACACAC 59.870 43.478 0.00 0.00 0.00 3.82
2051 2073 3.129462 CACACAACCAATACCAACACACA 59.871 43.478 0.00 0.00 0.00 3.72
2052 2074 3.701241 CACACAACCAATACCAACACAC 58.299 45.455 0.00 0.00 0.00 3.82
2053 2075 2.099921 GCACACAACCAATACCAACACA 59.900 45.455 0.00 0.00 0.00 3.72
2054 2076 2.099921 TGCACACAACCAATACCAACAC 59.900 45.455 0.00 0.00 0.00 3.32
2055 2077 2.379005 TGCACACAACCAATACCAACA 58.621 42.857 0.00 0.00 0.00 3.33
2057 2079 2.560542 GGATGCACACAACCAATACCAA 59.439 45.455 0.00 0.00 38.58 3.67
2058 2080 2.166829 GGATGCACACAACCAATACCA 58.833 47.619 0.00 0.00 38.58 3.25
2059 2081 2.446435 AGGATGCACACAACCAATACC 58.554 47.619 0.00 0.00 41.12 2.73
2061 2083 4.568072 ACTAGGATGCACACAACCAATA 57.432 40.909 0.00 0.00 41.12 1.90
2062 2084 3.439857 ACTAGGATGCACACAACCAAT 57.560 42.857 0.00 0.00 41.12 3.16
2063 2085 2.949177 ACTAGGATGCACACAACCAA 57.051 45.000 0.00 0.00 41.12 3.67
2064 2086 2.949177 AACTAGGATGCACACAACCA 57.051 45.000 0.00 0.00 41.12 3.67
2078 2100 5.358442 ACACACCTAGACTCTGCATAACTAG 59.642 44.000 0.00 0.00 0.00 2.57
2079 2101 5.125578 CACACACCTAGACTCTGCATAACTA 59.874 44.000 0.00 0.00 0.00 2.24
2081 2103 4.177026 CACACACCTAGACTCTGCATAAC 58.823 47.826 0.00 0.00 0.00 1.89
2082 2104 3.368427 GCACACACCTAGACTCTGCATAA 60.368 47.826 0.00 0.00 0.00 1.90
2083 2105 2.166459 GCACACACCTAGACTCTGCATA 59.834 50.000 0.00 0.00 0.00 3.14
2084 2106 1.066573 GCACACACCTAGACTCTGCAT 60.067 52.381 0.00 0.00 0.00 3.96
2085 2107 0.318441 GCACACACCTAGACTCTGCA 59.682 55.000 0.00 0.00 0.00 4.41
2087 2109 1.889170 TGAGCACACACCTAGACTCTG 59.111 52.381 0.00 0.00 0.00 3.35
2088 2110 2.294449 TGAGCACACACCTAGACTCT 57.706 50.000 0.00 0.00 0.00 3.24
2089 2111 3.601443 AATGAGCACACACCTAGACTC 57.399 47.619 0.00 0.00 0.00 3.36
2090 2112 4.357918 AAAATGAGCACACACCTAGACT 57.642 40.909 0.00 0.00 0.00 3.24
2091 2113 6.743575 ATAAAAATGAGCACACACCTAGAC 57.256 37.500 0.00 0.00 0.00 2.59
2092 2114 6.714810 ACAATAAAAATGAGCACACACCTAGA 59.285 34.615 0.00 0.00 0.00 2.43
2093 2115 6.913170 ACAATAAAAATGAGCACACACCTAG 58.087 36.000 0.00 0.00 0.00 3.02
2095 2117 5.789643 ACAATAAAAATGAGCACACACCT 57.210 34.783 0.00 0.00 0.00 4.00
2097 2119 8.638565 GTGAATACAATAAAAATGAGCACACAC 58.361 33.333 0.00 0.00 0.00 3.82
2098 2120 8.575589 AGTGAATACAATAAAAATGAGCACACA 58.424 29.630 0.00 0.00 0.00 3.72
2100 2122 9.409312 CAAGTGAATACAATAAAAATGAGCACA 57.591 29.630 0.00 0.00 0.00 4.57
2101 2123 9.624697 TCAAGTGAATACAATAAAAATGAGCAC 57.375 29.630 0.00 0.00 0.00 4.40
2113 2135 9.146984 CAAAATGAAGCATCAAGTGAATACAAT 57.853 29.630 0.00 0.00 39.49 2.71
2114 2136 8.358895 TCAAAATGAAGCATCAAGTGAATACAA 58.641 29.630 0.00 0.00 39.49 2.41
2117 2139 8.114331 ACTCAAAATGAAGCATCAAGTGAATA 57.886 30.769 0.00 0.00 39.49 1.75
2118 2140 6.989659 ACTCAAAATGAAGCATCAAGTGAAT 58.010 32.000 0.00 0.00 39.49 2.57
2119 2141 6.395426 ACTCAAAATGAAGCATCAAGTGAA 57.605 33.333 0.00 0.00 39.49 3.18
2120 2142 7.509141 TTACTCAAAATGAAGCATCAAGTGA 57.491 32.000 0.00 0.00 39.49 3.41
2121 2143 9.844790 TTATTACTCAAAATGAAGCATCAAGTG 57.155 29.630 0.00 0.00 39.49 3.16
2165 2187 9.480053 CACTTCATTTGTTGGTCTGATATTTTT 57.520 29.630 0.00 0.00 0.00 1.94
2166 2188 8.641541 ACACTTCATTTGTTGGTCTGATATTTT 58.358 29.630 0.00 0.00 0.00 1.82
2167 2189 8.181904 ACACTTCATTTGTTGGTCTGATATTT 57.818 30.769 0.00 0.00 0.00 1.40
2168 2190 7.765695 ACACTTCATTTGTTGGTCTGATATT 57.234 32.000 0.00 0.00 0.00 1.28
2179 3125 7.815549 ACCGTTTTCTAAAACACTTCATTTGTT 59.184 29.630 16.24 0.00 46.52 2.83
2277 3832 3.302870 CCCCGTTTCGAAATATTACAGCG 60.303 47.826 14.69 9.81 0.00 5.18
2280 3835 5.105228 ACTCTCCCCGTTTCGAAATATTACA 60.105 40.000 14.69 0.00 0.00 2.41
2292 3847 2.206576 ACTACGTACTCTCCCCGTTT 57.793 50.000 0.00 0.00 36.12 3.60
2298 3853 4.562000 GCTTTTGCTAACTACGTACTCTCC 59.438 45.833 0.00 0.00 43.35 3.71
2300 3855 4.164294 CGCTTTTGCTAACTACGTACTCT 58.836 43.478 0.00 0.00 44.80 3.24
2368 3925 3.686726 ACGAAGAAAGGCAGTGATTGATC 59.313 43.478 0.00 0.00 0.00 2.92
2413 3970 0.405585 ATGCACAACCTAGCCCAAGT 59.594 50.000 0.00 0.00 0.00 3.16
2432 3989 4.994220 ATTTGTATTTGTACGTGCGACA 57.006 36.364 0.00 0.00 0.00 4.35
2461 5473 6.909550 AGACCTAGGAAGATATAGCTGTTG 57.090 41.667 17.98 0.00 0.00 3.33
2463 5475 7.337826 AGTAGACCTAGGAAGATATAGCTGT 57.662 40.000 17.98 0.00 0.00 4.40
2536 5548 0.898320 CATAGATCACGGCTAGGGGG 59.102 60.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.