Multiple sequence alignment - TraesCS7A01G409300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G409300 chr7A 100.000 2997 0 0 1 2997 596327422 596330418 0.000000e+00 5535
1 TraesCS7A01G409300 chr7A 93.362 1401 69 15 472 1861 596648042 596649429 0.000000e+00 2050
2 TraesCS7A01G409300 chr7A 93.362 1401 69 15 472 1861 596656107 596657494 0.000000e+00 2050
3 TraesCS7A01G409300 chr7A 91.799 1390 88 15 472 1846 596340217 596341595 0.000000e+00 1912
4 TraesCS7A01G409300 chr7A 87.726 554 60 8 2144 2694 596659135 596659683 9.060000e-180 640
5 TraesCS7A01G409300 chr7A 91.422 408 19 13 34 440 687904308 687904700 2.030000e-151 545
6 TraesCS7A01G409300 chr7A 90.237 379 34 3 2317 2694 596342057 596342433 2.680000e-135 492
7 TraesCS7A01G409300 chr7D 90.845 2545 174 30 475 2997 520344940 520342433 0.000000e+00 3354
8 TraesCS7A01G409300 chr7D 89.365 1401 111 26 472 1857 520281083 520279706 0.000000e+00 1727
9 TraesCS7A01G409300 chr7D 89.293 1401 112 26 472 1857 520273489 520272112 0.000000e+00 1722
10 TraesCS7A01G409300 chr7D 85.302 381 49 5 1947 2323 509828060 509828437 1.300000e-103 387
11 TraesCS7A01G409300 chr7D 91.329 173 14 1 2523 2694 520341519 520341347 4.990000e-58 235
12 TraesCS7A01G409300 chr7B 89.079 1401 101 20 472 1857 553321785 553323148 0.000000e+00 1692
13 TraesCS7A01G409300 chr7B 93.111 479 28 4 2523 2997 553335201 553335678 0.000000e+00 697
14 TraesCS7A01G409300 chr7B 92.486 173 12 1 2523 2694 553336600 553336772 2.310000e-61 246
15 TraesCS7A01G409300 chr2A 97.602 417 7 3 33 448 174751874 174751460 0.000000e+00 712
16 TraesCS7A01G409300 chr2A 92.138 407 23 9 37 438 33688698 33689100 1.560000e-157 566
17 TraesCS7A01G409300 chr2A 88.471 399 38 5 1935 2328 44757371 44757766 2.700000e-130 475
18 TraesCS7A01G409300 chrUn 87.410 556 60 8 2144 2694 347888008 347888558 5.450000e-177 630
19 TraesCS7A01G409300 chrUn 91.329 173 12 3 2523 2694 457868022 457867852 1.800000e-57 233
20 TraesCS7A01G409300 chrUn 91.329 173 12 3 2523 2694 476884736 476884566 1.800000e-57 233
21 TraesCS7A01G409300 chr5A 95.202 396 14 4 37 431 494869378 494868987 3.280000e-174 621
22 TraesCS7A01G409300 chr5B 92.365 406 24 6 38 438 705985340 705984937 3.350000e-159 571
23 TraesCS7A01G409300 chr4B 91.505 412 27 7 35 439 520838983 520839393 7.260000e-156 560
24 TraesCS7A01G409300 chr1D 92.099 405 19 9 38 441 462135067 462135459 2.610000e-155 558
25 TraesCS7A01G409300 chr1D 88.144 388 40 6 1946 2328 39864699 39864313 9.790000e-125 457
26 TraesCS7A01G409300 chr5D 91.400 407 28 7 38 441 13171346 13170944 4.370000e-153 551
27 TraesCS7A01G409300 chr6D 91.198 409 28 8 32 438 79703138 79703540 1.570000e-152 549
28 TraesCS7A01G409300 chr3D 89.664 387 33 7 1943 2328 58397540 58397920 1.250000e-133 486
29 TraesCS7A01G409300 chr3D 88.384 396 35 11 1945 2337 547454590 547454203 1.630000e-127 466
30 TraesCS7A01G409300 chr3B 87.023 393 40 7 1946 2330 606379557 606379168 1.650000e-117 433
31 TraesCS7A01G409300 chr3A 84.833 389 46 9 1943 2328 175363190 175363568 2.180000e-101 379
32 TraesCS7A01G409300 chr1B 83.979 387 47 10 1943 2327 550923043 550923416 1.020000e-94 357
33 TraesCS7A01G409300 chr2B 84.115 384 36 11 1943 2325 67894080 67894439 6.150000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G409300 chr7A 596327422 596330418 2996 False 5535.0 5535 100.0000 1 2997 1 chr7A.!!$F1 2996
1 TraesCS7A01G409300 chr7A 596648042 596649429 1387 False 2050.0 2050 93.3620 472 1861 1 chr7A.!!$F2 1389
2 TraesCS7A01G409300 chr7A 596656107 596659683 3576 False 1345.0 2050 90.5440 472 2694 2 chr7A.!!$F5 2222
3 TraesCS7A01G409300 chr7A 596340217 596342433 2216 False 1202.0 1912 91.0180 472 2694 2 chr7A.!!$F4 2222
4 TraesCS7A01G409300 chr7D 520341347 520344940 3593 True 1794.5 3354 91.0870 475 2997 2 chr7D.!!$R3 2522
5 TraesCS7A01G409300 chr7D 520279706 520281083 1377 True 1727.0 1727 89.3650 472 1857 1 chr7D.!!$R2 1385
6 TraesCS7A01G409300 chr7D 520272112 520273489 1377 True 1722.0 1722 89.2930 472 1857 1 chr7D.!!$R1 1385
7 TraesCS7A01G409300 chr7B 553321785 553323148 1363 False 1692.0 1692 89.0790 472 1857 1 chr7B.!!$F1 1385
8 TraesCS7A01G409300 chr7B 553335201 553336772 1571 False 471.5 697 92.7985 2523 2997 2 chr7B.!!$F2 474
9 TraesCS7A01G409300 chrUn 347888008 347888558 550 False 630.0 630 87.4100 2144 2694 1 chrUn.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 653 0.382515 GCAGATCGGCTACTCGTTCT 59.617 55.0 10.86 0.0 39.05 3.01 F
754 761 0.523072 GCATGGCACGATGTTTCAGT 59.477 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 3231 0.247460 GGCTTGGTTTCCAGCATTCC 59.753 55.0 10.50 0.0 33.81 3.01 R
2731 5671 0.188342 AACTTGGCAGGGGTCAACAT 59.812 50.0 0.44 0.0 32.69 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.993748 TTGTCCAACATTTTCCTTATCCC 57.006 39.130 0.00 0.00 0.00 3.85
24 25 5.004361 TGTCCAACATTTTCCTTATCCCA 57.996 39.130 0.00 0.00 0.00 4.37
25 26 5.016173 TGTCCAACATTTTCCTTATCCCAG 58.984 41.667 0.00 0.00 0.00 4.45
27 28 4.045334 TCCAACATTTTCCTTATCCCAGGT 59.955 41.667 0.00 0.00 35.15 4.00
29 30 5.248248 CCAACATTTTCCTTATCCCAGGTTT 59.752 40.000 0.00 0.00 35.15 3.27
31 32 6.358974 ACATTTTCCTTATCCCAGGTTTTG 57.641 37.500 0.00 0.00 35.15 2.44
34 35 4.733077 TTCCTTATCCCAGGTTTTGTCA 57.267 40.909 0.00 0.00 35.15 3.58
36 37 6.395780 TTCCTTATCCCAGGTTTTGTCATA 57.604 37.500 0.00 0.00 35.15 2.15
37 38 6.001449 TCCTTATCCCAGGTTTTGTCATAG 57.999 41.667 0.00 0.00 35.15 2.23
38 39 5.104109 TCCTTATCCCAGGTTTTGTCATAGG 60.104 44.000 0.00 0.00 35.15 2.57
39 40 3.669939 ATCCCAGGTTTTGTCATAGGG 57.330 47.619 0.00 0.00 36.15 3.53
41 42 2.990284 TCCCAGGTTTTGTCATAGGGAA 59.010 45.455 0.00 0.00 40.68 3.97
42 43 3.399644 TCCCAGGTTTTGTCATAGGGAAA 59.600 43.478 0.00 0.00 40.68 3.13
43 44 3.763897 CCCAGGTTTTGTCATAGGGAAAG 59.236 47.826 0.00 0.00 36.96 2.62
44 45 3.763897 CCAGGTTTTGTCATAGGGAAAGG 59.236 47.826 0.00 0.00 0.00 3.11
45 46 4.407365 CAGGTTTTGTCATAGGGAAAGGT 58.593 43.478 0.00 0.00 0.00 3.50
46 47 4.218417 CAGGTTTTGTCATAGGGAAAGGTG 59.782 45.833 0.00 0.00 0.00 4.00
48 49 4.022329 GGTTTTGTCATAGGGAAAGGTGTG 60.022 45.833 0.00 0.00 0.00 3.82
49 50 4.715534 TTTGTCATAGGGAAAGGTGTGA 57.284 40.909 0.00 0.00 0.00 3.58
50 51 3.695830 TGTCATAGGGAAAGGTGTGAC 57.304 47.619 0.00 0.00 35.86 3.67
51 52 2.976185 TGTCATAGGGAAAGGTGTGACA 59.024 45.455 2.22 2.22 41.02 3.58
52 53 3.007940 TGTCATAGGGAAAGGTGTGACAG 59.992 47.826 2.22 0.00 39.16 3.51
53 54 2.027192 TCATAGGGAAAGGTGTGACAGC 60.027 50.000 6.68 6.68 0.00 4.40
54 55 1.729586 TAGGGAAAGGTGTGACAGCT 58.270 50.000 12.08 12.08 44.48 4.24
55 56 0.398318 AGGGAAAGGTGTGACAGCTC 59.602 55.000 18.37 6.62 41.59 4.09
56 57 0.606673 GGGAAAGGTGTGACAGCTCC 60.607 60.000 18.37 15.28 41.59 4.70
57 58 0.606673 GGAAAGGTGTGACAGCTCCC 60.607 60.000 18.37 17.25 41.59 4.30
58 59 0.951040 GAAAGGTGTGACAGCTCCCG 60.951 60.000 18.37 0.00 41.59 5.14
59 60 2.397413 AAAGGTGTGACAGCTCCCGG 62.397 60.000 18.37 0.00 41.59 5.73
60 61 4.394712 GGTGTGACAGCTCCCGGG 62.395 72.222 16.85 16.85 0.00 5.73
61 62 3.626924 GTGTGACAGCTCCCGGGT 61.627 66.667 22.86 0.00 0.00 5.28
65 66 4.767255 GACAGCTCCCGGGTGCAG 62.767 72.222 40.44 35.86 46.30 4.41
86 87 2.489938 GGCACCCTCATGAACAGTAA 57.510 50.000 0.00 0.00 0.00 2.24
87 88 2.084546 GGCACCCTCATGAACAGTAAC 58.915 52.381 0.00 0.00 0.00 2.50
88 89 2.290323 GGCACCCTCATGAACAGTAACT 60.290 50.000 0.00 0.00 0.00 2.24
89 90 3.412386 GCACCCTCATGAACAGTAACTT 58.588 45.455 0.00 0.00 0.00 2.66
92 93 5.063204 CACCCTCATGAACAGTAACTTCAA 58.937 41.667 0.00 0.00 31.48 2.69
94 95 5.531287 ACCCTCATGAACAGTAACTTCAAAC 59.469 40.000 0.00 0.00 31.48 2.93
95 96 5.530915 CCCTCATGAACAGTAACTTCAAACA 59.469 40.000 0.00 0.00 31.48 2.83
96 97 6.039270 CCCTCATGAACAGTAACTTCAAACAA 59.961 38.462 0.00 0.00 31.48 2.83
97 98 7.255590 CCCTCATGAACAGTAACTTCAAACAAT 60.256 37.037 0.00 0.00 31.48 2.71
98 99 8.783093 CCTCATGAACAGTAACTTCAAACAATA 58.217 33.333 0.00 0.00 31.48 1.90
138 139 6.700845 AAAATCTGAAATTTTGGGGGATCA 57.299 33.333 0.00 0.00 30.84 2.92
140 141 6.700845 AATCTGAAATTTTGGGGGATCAAA 57.299 33.333 0.00 0.00 35.15 2.69
143 144 7.993349 TCTGAAATTTTGGGGGATCAAATAT 57.007 32.000 0.00 0.00 36.63 1.28
144 145 7.794041 TCTGAAATTTTGGGGGATCAAATATG 58.206 34.615 0.00 0.00 36.63 1.78
145 146 7.622878 TCTGAAATTTTGGGGGATCAAATATGA 59.377 33.333 0.00 0.00 40.57 2.15
147 148 9.444668 TGAAATTTTGGGGGATCAAATATGATA 57.555 29.630 0.00 0.00 46.30 2.15
153 154 8.852671 TTGGGGGATCAAATATGATAAAACTT 57.147 30.769 0.00 0.00 46.30 2.66
154 155 8.852671 TGGGGGATCAAATATGATAAAACTTT 57.147 30.769 0.00 0.00 46.30 2.66
156 157 9.546428 GGGGGATCAAATATGATAAAACTTTTG 57.454 33.333 0.00 0.00 46.30 2.44
167 168 8.659925 ATGATAAAACTTTTGATGTTGTTGCA 57.340 26.923 0.00 0.00 0.00 4.08
168 169 8.484641 TGATAAAACTTTTGATGTTGTTGCAA 57.515 26.923 0.00 0.00 0.00 4.08
173 174 9.473640 AAAACTTTTGATGTTGTTGCAAATTTT 57.526 22.222 0.00 0.00 32.27 1.82
175 176 7.814642 ACTTTTGATGTTGTTGCAAATTTTCA 58.185 26.923 0.00 0.00 32.27 2.69
176 177 7.964011 ACTTTTGATGTTGTTGCAAATTTTCAG 59.036 29.630 0.00 0.00 32.27 3.02
177 178 5.406767 TGATGTTGTTGCAAATTTTCAGC 57.593 34.783 0.00 0.00 0.00 4.26
178 179 4.272991 TGATGTTGTTGCAAATTTTCAGCC 59.727 37.500 0.00 0.00 0.00 4.85
179 180 3.603532 TGTTGTTGCAAATTTTCAGCCA 58.396 36.364 0.00 0.00 0.00 4.75
180 181 3.622163 TGTTGTTGCAAATTTTCAGCCAG 59.378 39.130 0.00 0.00 0.00 4.85
181 182 3.815856 TGTTGCAAATTTTCAGCCAGA 57.184 38.095 0.00 0.00 0.00 3.86
182 183 4.134379 TGTTGCAAATTTTCAGCCAGAA 57.866 36.364 0.00 0.00 0.00 3.02
183 184 4.511527 TGTTGCAAATTTTCAGCCAGAAA 58.488 34.783 0.00 0.00 44.21 2.52
184 185 5.124645 TGTTGCAAATTTTCAGCCAGAAAT 58.875 33.333 0.00 0.00 45.15 2.17
186 187 6.765036 TGTTGCAAATTTTCAGCCAGAAATAA 59.235 30.769 0.00 0.00 45.15 1.40
187 188 6.783892 TGCAAATTTTCAGCCAGAAATAAC 57.216 33.333 3.13 0.00 45.15 1.89
188 189 6.286758 TGCAAATTTTCAGCCAGAAATAACA 58.713 32.000 3.13 0.00 45.15 2.41
189 190 6.202570 TGCAAATTTTCAGCCAGAAATAACAC 59.797 34.615 3.13 0.00 45.15 3.32
191 192 7.359514 GCAAATTTTCAGCCAGAAATAACACTC 60.360 37.037 3.13 0.00 45.15 3.51
192 193 5.356882 TTTTCAGCCAGAAATAACACTCG 57.643 39.130 3.13 0.00 45.15 4.18
194 195 3.849911 TCAGCCAGAAATAACACTCGAG 58.150 45.455 11.84 11.84 0.00 4.04
195 196 2.932614 CAGCCAGAAATAACACTCGAGG 59.067 50.000 18.41 8.36 0.00 4.63
197 198 3.118956 AGCCAGAAATAACACTCGAGGAG 60.119 47.826 18.41 11.44 35.52 3.69
198 199 3.190874 CCAGAAATAACACTCGAGGAGC 58.809 50.000 18.41 0.00 32.04 4.70
199 200 3.190874 CAGAAATAACACTCGAGGAGCC 58.809 50.000 18.41 0.00 32.04 4.70
200 201 2.168728 AGAAATAACACTCGAGGAGCCC 59.831 50.000 18.41 0.00 32.04 5.19
201 202 1.867363 AATAACACTCGAGGAGCCCT 58.133 50.000 18.41 0.00 36.03 5.19
202 203 1.404843 ATAACACTCGAGGAGCCCTC 58.595 55.000 18.41 10.35 46.44 4.30
236 237 6.782150 ACAAAACTACTGCTCAAAACTACAC 58.218 36.000 0.00 0.00 0.00 2.90
238 239 7.067008 ACAAAACTACTGCTCAAAACTACACAT 59.933 33.333 0.00 0.00 0.00 3.21
239 240 8.556194 CAAAACTACTGCTCAAAACTACACATA 58.444 33.333 0.00 0.00 0.00 2.29
240 241 8.671384 AAACTACTGCTCAAAACTACACATAA 57.329 30.769 0.00 0.00 0.00 1.90
241 242 7.653767 ACTACTGCTCAAAACTACACATAAC 57.346 36.000 0.00 0.00 0.00 1.89
242 243 7.442656 ACTACTGCTCAAAACTACACATAACT 58.557 34.615 0.00 0.00 0.00 2.24
244 245 7.568199 ACTGCTCAAAACTACACATAACTTT 57.432 32.000 0.00 0.00 0.00 2.66
245 246 7.417612 ACTGCTCAAAACTACACATAACTTTG 58.582 34.615 0.00 0.00 0.00 2.77
246 247 7.282224 ACTGCTCAAAACTACACATAACTTTGA 59.718 33.333 0.00 0.00 33.19 2.69
248 249 7.913297 TGCTCAAAACTACACATAACTTTGAAC 59.087 33.333 0.00 0.00 33.68 3.18
249 250 7.913297 GCTCAAAACTACACATAACTTTGAACA 59.087 33.333 0.00 0.00 33.68 3.18
252 253 9.009327 CAAAACTACACATAACTTTGAACACTG 57.991 33.333 0.00 0.00 0.00 3.66
253 254 8.500753 AAACTACACATAACTTTGAACACTGA 57.499 30.769 0.00 0.00 0.00 3.41
254 255 8.677148 AACTACACATAACTTTGAACACTGAT 57.323 30.769 0.00 0.00 0.00 2.90
258 259 8.633075 ACACATAACTTTGAACACTGATTTTG 57.367 30.769 0.00 0.00 0.00 2.44
259 260 8.250332 ACACATAACTTTGAACACTGATTTTGT 58.750 29.630 0.00 0.00 0.00 2.83
260 261 8.533965 CACATAACTTTGAACACTGATTTTGTG 58.466 33.333 0.00 0.00 40.87 3.33
287 288 3.233355 GTGAGGGCTTCACGAATGT 57.767 52.632 14.25 0.00 46.13 2.71
288 289 1.523758 GTGAGGGCTTCACGAATGTT 58.476 50.000 14.25 0.00 46.13 2.71
289 290 1.880027 GTGAGGGCTTCACGAATGTTT 59.120 47.619 14.25 0.00 46.13 2.83
290 291 2.293399 GTGAGGGCTTCACGAATGTTTT 59.707 45.455 14.25 0.00 46.13 2.43
291 292 2.955660 TGAGGGCTTCACGAATGTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
314 315 6.768029 TTGATGCTAAAACTTTGCATGAAC 57.232 33.333 11.99 1.07 45.90 3.18
316 317 4.300189 TGCTAAAACTTTGCATGAACGT 57.700 36.364 0.00 0.00 0.00 3.99
317 318 4.677584 TGCTAAAACTTTGCATGAACGTT 58.322 34.783 0.00 0.00 0.00 3.99
319 320 4.737765 GCTAAAACTTTGCATGAACGTTGA 59.262 37.500 5.00 0.00 0.00 3.18
320 321 5.231147 GCTAAAACTTTGCATGAACGTTGAA 59.769 36.000 5.00 0.00 0.00 2.69
323 324 4.305989 ACTTTGCATGAACGTTGAATGT 57.694 36.364 5.00 0.00 0.00 2.71
324 325 4.681744 ACTTTGCATGAACGTTGAATGTT 58.318 34.783 5.00 1.83 0.00 2.71
325 326 5.108517 ACTTTGCATGAACGTTGAATGTTT 58.891 33.333 5.00 0.00 0.00 2.83
326 327 5.005586 ACTTTGCATGAACGTTGAATGTTTG 59.994 36.000 5.00 1.24 0.00 2.93
327 328 4.298744 TGCATGAACGTTGAATGTTTGA 57.701 36.364 5.00 0.00 0.00 2.69
328 329 4.869215 TGCATGAACGTTGAATGTTTGAT 58.131 34.783 5.00 0.00 0.00 2.57
329 330 4.916831 TGCATGAACGTTGAATGTTTGATC 59.083 37.500 5.00 0.00 0.00 2.92
330 331 4.916831 GCATGAACGTTGAATGTTTGATCA 59.083 37.500 5.00 0.00 0.00 2.92
331 332 5.574055 GCATGAACGTTGAATGTTTGATCAT 59.426 36.000 5.00 0.81 0.00 2.45
332 333 6.746822 GCATGAACGTTGAATGTTTGATCATA 59.253 34.615 5.00 0.00 0.00 2.15
334 335 9.292846 CATGAACGTTGAATGTTTGATCATATT 57.707 29.630 5.00 0.00 0.00 1.28
335 336 9.859427 ATGAACGTTGAATGTTTGATCATATTT 57.141 25.926 5.00 0.00 0.00 1.40
336 337 9.127006 TGAACGTTGAATGTTTGATCATATTTG 57.873 29.630 5.00 0.00 0.00 2.32
338 339 9.859427 AACGTTGAATGTTTGATCATATTTGAT 57.141 25.926 0.00 0.00 45.39 2.57
351 352 7.754091 ATCATATTTGATCCCCCAAAGTTTT 57.246 32.000 0.00 0.00 38.18 2.43
352 353 8.852671 ATCATATTTGATCCCCCAAAGTTTTA 57.147 30.769 0.00 0.00 38.18 1.52
353 354 8.305046 TCATATTTGATCCCCCAAAGTTTTAG 57.695 34.615 0.00 0.00 39.13 1.85
354 355 8.119246 TCATATTTGATCCCCCAAAGTTTTAGA 58.881 33.333 0.00 0.00 39.13 2.10
355 356 8.927411 CATATTTGATCCCCCAAAGTTTTAGAT 58.073 33.333 0.00 0.00 39.13 1.98
356 357 7.813087 ATTTGATCCCCCAAAGTTTTAGATT 57.187 32.000 0.00 0.00 39.13 2.40
357 358 7.625498 TTTGATCCCCCAAAGTTTTAGATTT 57.375 32.000 0.00 0.00 32.77 2.17
358 359 7.625498 TTGATCCCCCAAAGTTTTAGATTTT 57.375 32.000 0.00 0.00 0.00 1.82
359 360 7.625498 TGATCCCCCAAAGTTTTAGATTTTT 57.375 32.000 0.00 0.00 0.00 1.94
397 398 9.755804 TTCATATTGTTTTGCATTTACTGTTCA 57.244 25.926 0.00 0.00 0.00 3.18
398 399 9.926158 TCATATTGTTTTGCATTTACTGTTCAT 57.074 25.926 0.00 0.00 0.00 2.57
399 400 9.961266 CATATTGTTTTGCATTTACTGTTCATG 57.039 29.630 0.00 0.00 0.00 3.07
400 401 9.926158 ATATTGTTTTGCATTTACTGTTCATGA 57.074 25.926 0.00 0.00 0.00 3.07
401 402 7.697352 TTGTTTTGCATTTACTGTTCATGAG 57.303 32.000 0.00 0.00 0.00 2.90
402 403 6.215121 TGTTTTGCATTTACTGTTCATGAGG 58.785 36.000 0.00 0.00 0.00 3.86
405 406 3.758023 TGCATTTACTGTTCATGAGGGTG 59.242 43.478 0.00 0.00 0.00 4.61
408 409 0.618458 TACTGTTCATGAGGGTGCCC 59.382 55.000 0.00 0.00 0.00 5.36
426 427 4.020617 CTGCACCCGGGAGCTGAA 62.021 66.667 37.52 20.81 33.96 3.02
428 429 2.747855 GCACCCGGGAGCTGAAAG 60.748 66.667 32.83 10.45 0.00 2.62
429 430 2.750350 CACCCGGGAGCTGAAAGT 59.250 61.111 32.02 0.00 35.30 2.66
430 431 1.376037 CACCCGGGAGCTGAAAGTC 60.376 63.158 32.02 0.00 35.30 3.01
431 432 2.269241 CCCGGGAGCTGAAAGTCC 59.731 66.667 18.48 0.00 35.30 3.85
432 433 2.592993 CCCGGGAGCTGAAAGTCCA 61.593 63.158 18.48 0.00 36.33 4.02
434 435 1.674057 CGGGAGCTGAAAGTCCAGT 59.326 57.895 0.00 0.00 36.33 4.00
435 436 0.390472 CGGGAGCTGAAAGTCCAGTC 60.390 60.000 0.00 0.00 36.33 3.51
437 438 1.066502 GGGAGCTGAAAGTCCAGTCTC 60.067 57.143 0.00 0.00 36.33 3.36
438 439 1.899142 GGAGCTGAAAGTCCAGTCTCT 59.101 52.381 0.00 0.00 37.42 3.10
439 440 2.301583 GGAGCTGAAAGTCCAGTCTCTT 59.698 50.000 0.00 0.00 37.42 2.85
440 441 3.244387 GGAGCTGAAAGTCCAGTCTCTTT 60.244 47.826 0.00 0.00 37.42 2.52
441 442 3.737850 AGCTGAAAGTCCAGTCTCTTTG 58.262 45.455 0.00 0.00 36.57 2.77
442 443 3.135530 AGCTGAAAGTCCAGTCTCTTTGT 59.864 43.478 0.00 0.00 36.57 2.83
443 444 3.496507 GCTGAAAGTCCAGTCTCTTTGTC 59.503 47.826 0.00 0.00 36.57 3.18
444 445 4.697514 CTGAAAGTCCAGTCTCTTTGTCA 58.302 43.478 0.00 0.00 34.60 3.58
445 446 5.296151 TGAAAGTCCAGTCTCTTTGTCAT 57.704 39.130 0.00 0.00 34.60 3.06
447 448 7.009179 TGAAAGTCCAGTCTCTTTGTCATAT 57.991 36.000 0.00 0.00 34.60 1.78
448 449 7.099764 TGAAAGTCCAGTCTCTTTGTCATATC 58.900 38.462 0.00 0.00 34.60 1.63
450 451 5.971763 AGTCCAGTCTCTTTGTCATATCAC 58.028 41.667 0.00 0.00 0.00 3.06
452 453 4.462834 TCCAGTCTCTTTGTCATATCACGT 59.537 41.667 0.00 0.00 0.00 4.49
453 454 5.650703 TCCAGTCTCTTTGTCATATCACGTA 59.349 40.000 0.00 0.00 0.00 3.57
454 455 6.152154 TCCAGTCTCTTTGTCATATCACGTAA 59.848 38.462 0.00 0.00 0.00 3.18
455 456 6.253727 CCAGTCTCTTTGTCATATCACGTAAC 59.746 42.308 0.00 0.00 0.00 2.50
456 457 6.021390 CAGTCTCTTTGTCATATCACGTAACG 60.021 42.308 0.00 0.00 0.00 3.18
458 459 3.861113 TCTTTGTCATATCACGTAACGGC 59.139 43.478 0.00 0.00 0.00 5.68
459 460 2.943449 TGTCATATCACGTAACGGCA 57.057 45.000 0.00 0.00 0.00 5.69
460 461 3.446310 TGTCATATCACGTAACGGCAT 57.554 42.857 0.00 0.00 0.00 4.40
462 463 5.128992 TGTCATATCACGTAACGGCATAT 57.871 39.130 0.00 0.00 0.00 1.78
463 464 6.256912 TGTCATATCACGTAACGGCATATA 57.743 37.500 0.00 0.00 0.00 0.86
464 465 6.859017 TGTCATATCACGTAACGGCATATAT 58.141 36.000 0.00 0.00 0.00 0.86
465 466 6.970613 TGTCATATCACGTAACGGCATATATC 59.029 38.462 0.00 0.00 0.00 1.63
468 469 8.340443 TCATATCACGTAACGGCATATATCTAC 58.660 37.037 0.00 0.00 0.00 2.59
469 470 6.754702 ATCACGTAACGGCATATATCTACT 57.245 37.500 0.00 0.00 0.00 2.57
470 471 6.174451 TCACGTAACGGCATATATCTACTC 57.826 41.667 0.00 0.00 0.00 2.59
479 480 6.096987 ACGGCATATATCTACTCCTACAATGG 59.903 42.308 0.00 0.00 0.00 3.16
490 491 4.715297 ACTCCTACAATGGTACGGATTTCT 59.285 41.667 0.00 0.00 31.11 2.52
514 515 9.451002 TCTGTACTCTTATCATACTGTATAGGC 57.549 37.037 0.00 0.00 0.00 3.93
515 516 9.232473 CTGTACTCTTATCATACTGTATAGGCA 57.768 37.037 0.00 0.00 0.00 4.75
569 570 8.554835 TCCGTGATTAATTAACTTCATTCACA 57.445 30.769 19.67 6.04 0.00 3.58
571 572 9.225201 CCGTGATTAATTAACTTCATTCACATG 57.775 33.333 19.67 11.02 0.00 3.21
599 605 2.631418 CTGCAGATGAAACTTGCAGG 57.369 50.000 8.42 0.00 46.32 4.85
608 614 3.476552 TGAAACTTGCAGGAGATCGTTT 58.523 40.909 1.40 0.00 0.00 3.60
643 649 0.945099 TACTGCAGATCGGCTACTCG 59.055 55.000 23.35 5.06 34.04 4.18
647 653 0.382515 GCAGATCGGCTACTCGTTCT 59.617 55.000 10.86 0.00 39.05 3.01
751 758 3.631145 ATATGCATGGCACGATGTTTC 57.369 42.857 10.16 0.00 43.04 2.78
754 761 0.523072 GCATGGCACGATGTTTCAGT 59.477 50.000 0.00 0.00 0.00 3.41
788 795 5.007724 GCATGTAAGTTTACTCCCACTATGC 59.992 44.000 0.00 0.00 34.77 3.14
790 797 4.532916 TGTAAGTTTACTCCCACTATGCCA 59.467 41.667 3.91 0.00 34.77 4.92
791 798 3.629142 AGTTTACTCCCACTATGCCAC 57.371 47.619 0.00 0.00 0.00 5.01
792 799 3.182152 AGTTTACTCCCACTATGCCACT 58.818 45.455 0.00 0.00 0.00 4.00
793 800 4.359105 AGTTTACTCCCACTATGCCACTA 58.641 43.478 0.00 0.00 0.00 2.74
794 801 4.969359 AGTTTACTCCCACTATGCCACTAT 59.031 41.667 0.00 0.00 0.00 2.12
795 802 4.955811 TTACTCCCACTATGCCACTATG 57.044 45.455 0.00 0.00 0.00 2.23
804 811 4.471025 CACTATGCCACTATGGATATGGGA 59.529 45.833 0.00 0.00 40.96 4.37
844 851 2.195411 TGCAGGAAGTTGCTGGCA 59.805 55.556 23.79 18.58 44.38 4.92
854 861 2.094675 AGTTGCTGGCATACAATGGAC 58.905 47.619 6.40 0.00 0.00 4.02
870 877 7.833285 ACAATGGACATTAACCAGTTTACTT 57.167 32.000 0.00 0.00 40.89 2.24
873 880 8.356657 CAATGGACATTAACCAGTTTACTTTCA 58.643 33.333 0.00 0.00 40.89 2.69
878 885 3.990318 AACCAGTTTACTTTCAGCTGC 57.010 42.857 9.47 0.00 0.00 5.25
971 988 3.243234 CCACTAGGTCAAGTAGATGCTCG 60.243 52.174 0.00 0.00 0.00 5.03
975 992 2.826128 AGGTCAAGTAGATGCTCGAACA 59.174 45.455 0.00 0.00 0.00 3.18
1005 1022 5.872963 TGCAAGATCACCTCAATGCTATAT 58.127 37.500 0.00 0.00 38.84 0.86
1388 1405 2.244281 CGAGCGACGGAAGATATACC 57.756 55.000 0.00 0.00 38.46 2.73
1526 1543 2.535331 AAGTGGTGGCTGGTACCCC 61.535 63.158 10.07 4.69 37.40 4.95
1538 1555 0.605589 GGTACCCCTATGCGAATGCC 60.606 60.000 0.00 0.00 41.78 4.40
1645 1663 6.321821 TGGTGCATACCCTTAAGTTATCTT 57.678 37.500 0.97 0.00 46.96 2.40
1684 1705 2.376518 TGAAGATGGAGCCCAGACTTTT 59.623 45.455 13.32 0.00 36.75 2.27
1753 1774 3.123959 GCGGCGTTTAAGTTCTTGTATGA 59.876 43.478 9.37 0.00 0.00 2.15
1902 3229 7.420002 AGTGTTTCAGAAAACGGTTAAATACC 58.580 34.615 0.00 0.00 46.39 2.73
1903 3230 7.283807 AGTGTTTCAGAAAACGGTTAAATACCT 59.716 33.333 0.00 0.00 46.39 3.08
1904 3231 7.377662 GTGTTTCAGAAAACGGTTAAATACCTG 59.622 37.037 0.00 0.00 46.39 4.00
1905 3232 6.563222 TTCAGAAAACGGTTAAATACCTGG 57.437 37.500 0.00 0.00 45.40 4.45
1906 3233 5.867330 TCAGAAAACGGTTAAATACCTGGA 58.133 37.500 0.00 0.00 45.40 3.86
1907 3234 6.297582 TCAGAAAACGGTTAAATACCTGGAA 58.702 36.000 0.00 0.00 45.40 3.53
1908 3235 6.943718 TCAGAAAACGGTTAAATACCTGGAAT 59.056 34.615 0.00 0.00 45.40 3.01
1909 3236 7.027161 CAGAAAACGGTTAAATACCTGGAATG 58.973 38.462 0.00 0.00 45.40 2.67
1988 3325 4.214971 GCATATGCTCCCTAATGAACAGTG 59.785 45.833 20.64 0.00 38.21 3.66
2087 3425 3.425193 GCTTGTCAATTTTCGTGCGAAAT 59.575 39.130 18.46 4.29 42.71 2.17
2088 3426 4.615121 GCTTGTCAATTTTCGTGCGAAATA 59.385 37.500 18.46 11.02 42.71 1.40
2154 3694 3.907894 TTTGGAGGTAACATTTGTCGC 57.092 42.857 0.00 0.00 41.41 5.19
2164 3704 1.526887 ACATTTGTCGCTCGACTTGTG 59.473 47.619 20.92 17.30 44.80 3.33
2194 3737 4.640201 GCACAGATCAAAATACTTGGGCTA 59.360 41.667 0.00 0.00 0.00 3.93
2211 3754 5.837829 TGGGCTATCCTCCTAAAAATTTGT 58.162 37.500 0.00 0.00 36.20 2.83
2236 3779 1.066908 AGCGTTTTGGTGTGACAATGG 59.933 47.619 0.00 0.00 0.00 3.16
2256 3799 8.859090 ACAATGGTCACATCTATTCTTTTCAAA 58.141 29.630 0.00 0.00 35.94 2.69
2257 3800 9.695526 CAATGGTCACATCTATTCTTTTCAAAA 57.304 29.630 0.00 0.00 35.94 2.44
2346 3892 8.961294 ATTTCCGTATAGTATACAGCTAAACG 57.039 34.615 18.24 6.09 0.00 3.60
2430 3976 3.878160 AAATTTGTTTCGTGTGTGGGT 57.122 38.095 0.00 0.00 0.00 4.51
2441 3987 0.631753 TGTGTGGGTTGGGAAGGAAA 59.368 50.000 0.00 0.00 0.00 3.13
2459 4005 4.079327 AGGAAAGGCCTCTGAATCAATCAT 60.079 41.667 5.23 0.00 46.97 2.45
2463 4009 2.691526 GGCCTCTGAATCAATCATTGCA 59.308 45.455 0.00 0.00 37.44 4.08
2511 4057 2.489938 CTTGCTTGGGCTAGGTTGTA 57.510 50.000 0.00 0.00 37.59 2.41
2518 4064 0.604578 GGGCTAGGTTGTACACGTCA 59.395 55.000 0.00 0.00 0.00 4.35
2522 4068 2.544277 GCTAGGTTGTACACGTCACACA 60.544 50.000 0.00 0.00 0.00 3.72
2537 5476 8.775527 ACACGTCACACATACAAATACAAATTA 58.224 29.630 0.00 0.00 0.00 1.40
2645 5585 2.419574 GCCGTGATGTATGTAACACCCT 60.420 50.000 0.00 0.00 42.09 4.34
2655 5595 8.677148 ATGTATGTAACACCCTGATAATCAAC 57.323 34.615 0.00 0.00 42.09 3.18
2689 5629 5.319453 CTCACCCTAATATGCCATGTCATT 58.681 41.667 0.00 0.00 0.00 2.57
2694 5634 6.886459 ACCCTAATATGCCATGTCATTATGTC 59.114 38.462 0.00 0.00 0.00 3.06
2695 5635 7.114754 CCCTAATATGCCATGTCATTATGTCT 58.885 38.462 0.00 0.00 0.00 3.41
2696 5636 7.281774 CCCTAATATGCCATGTCATTATGTCTC 59.718 40.741 0.00 0.00 0.00 3.36
2697 5637 7.281774 CCTAATATGCCATGTCATTATGTCTCC 59.718 40.741 0.00 0.00 0.00 3.71
2698 5638 4.719026 ATGCCATGTCATTATGTCTCCT 57.281 40.909 0.00 0.00 0.00 3.69
2699 5639 5.830799 ATGCCATGTCATTATGTCTCCTA 57.169 39.130 0.00 0.00 0.00 2.94
2700 5640 5.219343 TGCCATGTCATTATGTCTCCTAG 57.781 43.478 0.00 0.00 0.00 3.02
2701 5641 3.999663 GCCATGTCATTATGTCTCCTAGC 59.000 47.826 0.00 0.00 0.00 3.42
2702 5642 4.573900 CCATGTCATTATGTCTCCTAGCC 58.426 47.826 0.00 0.00 0.00 3.93
2703 5643 4.240888 CATGTCATTATGTCTCCTAGCCG 58.759 47.826 0.00 0.00 0.00 5.52
2704 5644 3.296854 TGTCATTATGTCTCCTAGCCGT 58.703 45.455 0.00 0.00 0.00 5.68
2705 5645 3.068165 TGTCATTATGTCTCCTAGCCGTG 59.932 47.826 0.00 0.00 0.00 4.94
2706 5646 3.318275 GTCATTATGTCTCCTAGCCGTGA 59.682 47.826 0.00 0.00 0.00 4.35
2707 5647 3.318275 TCATTATGTCTCCTAGCCGTGAC 59.682 47.826 0.00 0.00 0.00 3.67
2708 5648 2.730934 TATGTCTCCTAGCCGTGACT 57.269 50.000 0.00 0.00 0.00 3.41
2709 5649 1.853963 ATGTCTCCTAGCCGTGACTT 58.146 50.000 0.00 0.00 0.00 3.01
2710 5650 2.502142 TGTCTCCTAGCCGTGACTTA 57.498 50.000 0.00 0.00 0.00 2.24
2711 5651 3.014304 TGTCTCCTAGCCGTGACTTAT 57.986 47.619 0.00 0.00 0.00 1.73
2712 5652 3.362706 TGTCTCCTAGCCGTGACTTATT 58.637 45.455 0.00 0.00 0.00 1.40
2713 5653 3.767673 TGTCTCCTAGCCGTGACTTATTT 59.232 43.478 0.00 0.00 0.00 1.40
2714 5654 4.222145 TGTCTCCTAGCCGTGACTTATTTT 59.778 41.667 0.00 0.00 0.00 1.82
2715 5655 5.419788 TGTCTCCTAGCCGTGACTTATTTTA 59.580 40.000 0.00 0.00 0.00 1.52
2716 5656 5.747675 GTCTCCTAGCCGTGACTTATTTTAC 59.252 44.000 0.00 0.00 0.00 2.01
2717 5657 5.419788 TCTCCTAGCCGTGACTTATTTTACA 59.580 40.000 0.00 0.00 0.00 2.41
2718 5658 6.097839 TCTCCTAGCCGTGACTTATTTTACAT 59.902 38.462 0.00 0.00 0.00 2.29
2719 5659 6.046593 TCCTAGCCGTGACTTATTTTACATG 58.953 40.000 0.00 0.00 0.00 3.21
2720 5660 5.236478 CCTAGCCGTGACTTATTTTACATGG 59.764 44.000 0.00 0.00 40.92 3.66
2721 5661 4.839121 AGCCGTGACTTATTTTACATGGA 58.161 39.130 0.00 0.00 40.57 3.41
2722 5662 5.437060 AGCCGTGACTTATTTTACATGGAT 58.563 37.500 0.00 0.00 40.57 3.41
2723 5663 5.527582 AGCCGTGACTTATTTTACATGGATC 59.472 40.000 0.00 0.00 40.57 3.36
2724 5664 5.295787 GCCGTGACTTATTTTACATGGATCA 59.704 40.000 0.00 0.00 40.57 2.92
2725 5665 6.183360 GCCGTGACTTATTTTACATGGATCAA 60.183 38.462 0.00 0.00 40.57 2.57
2726 5666 7.627513 GCCGTGACTTATTTTACATGGATCAAA 60.628 37.037 0.00 0.00 40.57 2.69
2727 5667 8.405531 CCGTGACTTATTTTACATGGATCAAAT 58.594 33.333 0.00 0.00 40.57 2.32
2728 5668 9.225201 CGTGACTTATTTTACATGGATCAAATG 57.775 33.333 0.00 6.17 0.00 2.32
2729 5669 9.520204 GTGACTTATTTTACATGGATCAAATGG 57.480 33.333 11.17 0.00 0.00 3.16
2730 5670 8.694540 TGACTTATTTTACATGGATCAAATGGG 58.305 33.333 11.17 0.00 0.00 4.00
2731 5671 8.837099 ACTTATTTTACATGGATCAAATGGGA 57.163 30.769 11.17 0.00 0.00 4.37
2732 5672 9.438163 ACTTATTTTACATGGATCAAATGGGAT 57.562 29.630 11.17 0.00 0.00 3.85
2733 5673 9.701098 CTTATTTTACATGGATCAAATGGGATG 57.299 33.333 11.17 0.00 0.00 3.51
2734 5674 7.679732 ATTTTACATGGATCAAATGGGATGT 57.320 32.000 11.17 0.00 0.00 3.06
2735 5675 7.493499 TTTTACATGGATCAAATGGGATGTT 57.507 32.000 11.17 0.00 0.00 2.71
2736 5676 6.468333 TTACATGGATCAAATGGGATGTTG 57.532 37.500 11.17 0.00 0.00 3.33
2737 5677 4.612401 ACATGGATCAAATGGGATGTTGA 58.388 39.130 11.17 0.00 38.09 3.18
2738 5678 4.403432 ACATGGATCAAATGGGATGTTGAC 59.597 41.667 11.17 0.00 36.62 3.18
2739 5679 3.364549 TGGATCAAATGGGATGTTGACC 58.635 45.455 0.00 0.00 36.62 4.02
2740 5680 2.695147 GGATCAAATGGGATGTTGACCC 59.305 50.000 0.00 0.00 46.87 4.46
2741 5681 2.230130 TCAAATGGGATGTTGACCCC 57.770 50.000 0.00 0.00 46.21 4.95
2742 5682 1.715931 TCAAATGGGATGTTGACCCCT 59.284 47.619 0.00 0.00 46.21 4.79
2743 5683 1.826720 CAAATGGGATGTTGACCCCTG 59.173 52.381 0.00 0.00 46.21 4.45
2744 5684 0.324645 AATGGGATGTTGACCCCTGC 60.325 55.000 0.00 0.00 46.21 4.85
2745 5685 2.043953 GGGATGTTGACCCCTGCC 60.044 66.667 0.00 0.00 41.38 4.85
2746 5686 2.763215 GGATGTTGACCCCTGCCA 59.237 61.111 0.00 0.00 0.00 4.92
2747 5687 1.076549 GGATGTTGACCCCTGCCAA 59.923 57.895 0.00 0.00 0.00 4.52
2748 5688 0.967380 GGATGTTGACCCCTGCCAAG 60.967 60.000 0.00 0.00 0.00 3.61
2749 5689 0.251341 GATGTTGACCCCTGCCAAGT 60.251 55.000 0.00 0.00 0.00 3.16
2750 5690 0.188342 ATGTTGACCCCTGCCAAGTT 59.812 50.000 0.00 0.00 0.00 2.66
2751 5691 0.467290 TGTTGACCCCTGCCAAGTTC 60.467 55.000 0.00 0.00 0.00 3.01
2752 5692 1.152830 TTGACCCCTGCCAAGTTCC 59.847 57.895 0.00 0.00 0.00 3.62
2753 5693 1.650242 TTGACCCCTGCCAAGTTCCA 61.650 55.000 0.00 0.00 0.00 3.53
2754 5694 1.603739 GACCCCTGCCAAGTTCCAC 60.604 63.158 0.00 0.00 0.00 4.02
2755 5695 2.351924 GACCCCTGCCAAGTTCCACA 62.352 60.000 0.00 0.00 0.00 4.17
2756 5696 1.152567 CCCCTGCCAAGTTCCACAA 60.153 57.895 0.00 0.00 0.00 3.33
2757 5697 0.758685 CCCCTGCCAAGTTCCACAAA 60.759 55.000 0.00 0.00 0.00 2.83
2758 5698 0.675633 CCCTGCCAAGTTCCACAAAG 59.324 55.000 0.00 0.00 0.00 2.77
2759 5699 0.675633 CCTGCCAAGTTCCACAAAGG 59.324 55.000 0.00 0.00 39.47 3.11
2760 5700 0.675633 CTGCCAAGTTCCACAAAGGG 59.324 55.000 0.00 0.00 38.24 3.95
2761 5701 0.758685 TGCCAAGTTCCACAAAGGGG 60.759 55.000 0.00 0.00 38.24 4.79
2762 5702 0.759060 GCCAAGTTCCACAAAGGGGT 60.759 55.000 0.00 0.00 38.24 4.95
2763 5703 1.328279 CCAAGTTCCACAAAGGGGTC 58.672 55.000 0.00 0.00 38.24 4.46
2764 5704 1.133482 CCAAGTTCCACAAAGGGGTCT 60.133 52.381 0.00 0.00 38.24 3.85
2765 5705 2.230660 CAAGTTCCACAAAGGGGTCTC 58.769 52.381 0.00 0.00 38.24 3.36
2766 5706 1.518367 AGTTCCACAAAGGGGTCTCA 58.482 50.000 0.00 0.00 38.24 3.27
2767 5707 2.065799 AGTTCCACAAAGGGGTCTCAT 58.934 47.619 0.00 0.00 38.24 2.90
2768 5708 2.447047 AGTTCCACAAAGGGGTCTCATT 59.553 45.455 0.00 0.00 38.24 2.57
2769 5709 2.820197 GTTCCACAAAGGGGTCTCATTC 59.180 50.000 0.00 0.00 38.24 2.67
2770 5710 2.348472 TCCACAAAGGGGTCTCATTCT 58.652 47.619 0.00 0.00 38.24 2.40
2771 5711 2.305927 TCCACAAAGGGGTCTCATTCTC 59.694 50.000 0.00 0.00 38.24 2.87
2772 5712 2.350522 CACAAAGGGGTCTCATTCTCG 58.649 52.381 0.00 0.00 0.00 4.04
2773 5713 2.028112 CACAAAGGGGTCTCATTCTCGA 60.028 50.000 0.00 0.00 0.00 4.04
2774 5714 2.840651 ACAAAGGGGTCTCATTCTCGAT 59.159 45.455 0.00 0.00 0.00 3.59
2775 5715 3.264450 ACAAAGGGGTCTCATTCTCGATT 59.736 43.478 0.00 0.00 0.00 3.34
2776 5716 4.263506 ACAAAGGGGTCTCATTCTCGATTT 60.264 41.667 0.00 0.00 0.00 2.17
2777 5717 3.828875 AGGGGTCTCATTCTCGATTTC 57.171 47.619 0.00 0.00 0.00 2.17
2778 5718 2.101582 AGGGGTCTCATTCTCGATTTCG 59.898 50.000 0.00 0.00 41.45 3.46
2789 5729 2.295253 TCGATTTCGAAGAGGAAGGC 57.705 50.000 0.00 0.00 46.30 4.35
2790 5730 1.548719 TCGATTTCGAAGAGGAAGGCA 59.451 47.619 0.00 0.00 46.30 4.75
2791 5731 2.168521 TCGATTTCGAAGAGGAAGGCAT 59.831 45.455 0.00 0.00 46.30 4.40
2792 5732 2.541762 CGATTTCGAAGAGGAAGGCATC 59.458 50.000 0.00 0.00 43.02 3.91
2793 5733 4.592368 CGATTTCGAAGAGGAAGGCATCC 61.592 52.174 0.00 0.00 45.13 3.51
2801 5741 2.511600 GAAGGCATCCACGGGTCG 60.512 66.667 0.00 0.00 0.00 4.79
2802 5742 4.096003 AAGGCATCCACGGGTCGG 62.096 66.667 0.00 0.00 0.00 4.79
2822 5762 4.637771 GGCACCTCTTGGCGTATT 57.362 55.556 0.00 0.00 41.69 1.89
2823 5763 2.098293 GGCACCTCTTGGCGTATTG 58.902 57.895 0.00 0.00 41.69 1.90
2824 5764 1.376609 GGCACCTCTTGGCGTATTGG 61.377 60.000 0.00 0.00 41.69 3.16
2825 5765 0.676782 GCACCTCTTGGCGTATTGGT 60.677 55.000 0.00 0.00 36.63 3.67
2826 5766 1.406341 GCACCTCTTGGCGTATTGGTA 60.406 52.381 0.00 0.00 36.63 3.25
2827 5767 2.277084 CACCTCTTGGCGTATTGGTAC 58.723 52.381 0.00 0.00 36.63 3.34
2828 5768 1.903860 ACCTCTTGGCGTATTGGTACA 59.096 47.619 0.00 0.00 36.63 2.90
2829 5769 2.303600 ACCTCTTGGCGTATTGGTACAA 59.696 45.455 0.00 0.00 39.87 2.41
2830 5770 3.618997 ACCTCTTGGCGTATTGGTACAAG 60.619 47.826 0.00 0.00 39.87 3.16
2831 5771 5.840910 ACCTCTTGGCGTATTGGTACAAGA 61.841 45.833 0.00 0.00 43.54 3.02
2832 5772 7.260763 ACCTCTTGGCGTATTGGTACAAGAA 62.261 44.000 0.00 0.00 44.61 2.52
2833 5773 8.487249 ACCTCTTGGCGTATTGGTACAAGAAT 62.487 42.308 0.00 0.00 44.61 2.40
2842 5782 1.541147 TGGTACAAGAATGCAGCTTGC 59.459 47.619 24.15 13.43 45.00 4.01
2854 5794 2.199236 GCAGCTTGCAAATATTCCTGC 58.801 47.619 0.00 8.13 44.26 4.85
2855 5795 2.417651 GCAGCTTGCAAATATTCCTGCA 60.418 45.455 10.15 10.15 46.50 4.41
2863 5803 6.971527 TGCAAATATTCCTGCAGAAAAATG 57.028 33.333 17.39 6.42 43.44 2.32
2864 5804 6.465948 TGCAAATATTCCTGCAGAAAAATGT 58.534 32.000 17.39 7.50 43.44 2.71
2865 5805 7.609960 TGCAAATATTCCTGCAGAAAAATGTA 58.390 30.769 17.39 2.11 43.44 2.29
2866 5806 8.259411 TGCAAATATTCCTGCAGAAAAATGTAT 58.741 29.630 17.39 0.00 43.44 2.29
2867 5807 9.101655 GCAAATATTCCTGCAGAAAAATGTATT 57.898 29.630 17.39 0.00 38.21 1.89
2871 5811 7.951347 ATTCCTGCAGAAAAATGTATTCTCT 57.049 32.000 17.39 0.00 38.21 3.10
2873 5813 9.638176 ATTCCTGCAGAAAAATGTATTCTCTAT 57.362 29.630 17.39 0.00 38.21 1.98
2874 5814 8.668510 TCCTGCAGAAAAATGTATTCTCTATC 57.331 34.615 17.39 0.00 34.99 2.08
2875 5815 8.267183 TCCTGCAGAAAAATGTATTCTCTATCA 58.733 33.333 17.39 0.00 34.99 2.15
2876 5816 8.557864 CCTGCAGAAAAATGTATTCTCTATCAG 58.442 37.037 17.39 0.00 34.99 2.90
2877 5817 9.322773 CTGCAGAAAAATGTATTCTCTATCAGA 57.677 33.333 8.42 0.00 34.99 3.27
2878 5818 9.671279 TGCAGAAAAATGTATTCTCTATCAGAA 57.329 29.630 0.00 0.00 45.60 3.02
2895 5835 9.942850 TCTATCAGAAACAATCTAACATGTTCA 57.057 29.630 15.85 3.26 38.75 3.18
2897 5837 7.439157 TCAGAAACAATCTAACATGTTCAGG 57.561 36.000 15.85 7.05 38.75 3.86
2898 5838 6.998074 TCAGAAACAATCTAACATGTTCAGGT 59.002 34.615 15.85 4.77 38.75 4.00
2899 5839 8.154203 TCAGAAACAATCTAACATGTTCAGGTA 58.846 33.333 15.85 0.00 38.75 3.08
2900 5840 8.783093 CAGAAACAATCTAACATGTTCAGGTAA 58.217 33.333 15.85 0.00 38.75 2.85
2901 5841 8.784043 AGAAACAATCTAACATGTTCAGGTAAC 58.216 33.333 15.85 5.91 38.75 2.50
2902 5842 8.691661 AAACAATCTAACATGTTCAGGTAACT 57.308 30.769 15.85 0.00 43.50 2.24
2903 5843 8.324163 AACAATCTAACATGTTCAGGTAACTC 57.676 34.615 15.85 0.00 37.56 3.01
2904 5844 7.936847 AACAATCTAACATGTTCAGGTAACTCA 59.063 33.333 15.85 0.00 37.56 3.41
2931 5871 5.995565 TGGATATGATTAAGTACCTCCCG 57.004 43.478 0.00 0.00 0.00 5.14
2932 5872 5.647230 TGGATATGATTAAGTACCTCCCGA 58.353 41.667 0.00 0.00 0.00 5.14
2933 5873 6.261435 TGGATATGATTAAGTACCTCCCGAT 58.739 40.000 0.00 0.00 0.00 4.18
2934 5874 6.154534 TGGATATGATTAAGTACCTCCCGATG 59.845 42.308 0.00 0.00 0.00 3.84
2935 5875 6.154706 GGATATGATTAAGTACCTCCCGATGT 59.845 42.308 0.00 0.00 0.00 3.06
2936 5876 4.665833 TGATTAAGTACCTCCCGATGTG 57.334 45.455 0.00 0.00 0.00 3.21
2937 5877 3.386726 TGATTAAGTACCTCCCGATGTGG 59.613 47.826 0.00 0.00 37.55 4.17
2946 5886 2.896854 CCGATGTGGGTGATGCGG 60.897 66.667 0.00 0.00 0.00 5.69
2947 5887 2.186644 CGATGTGGGTGATGCGGA 59.813 61.111 0.00 0.00 0.00 5.54
2948 5888 1.884464 CGATGTGGGTGATGCGGAG 60.884 63.158 0.00 0.00 0.00 4.63
2949 5889 1.524621 GATGTGGGTGATGCGGAGG 60.525 63.158 0.00 0.00 0.00 4.30
2950 5890 1.971505 GATGTGGGTGATGCGGAGGA 61.972 60.000 0.00 0.00 0.00 3.71
2951 5891 1.976132 ATGTGGGTGATGCGGAGGAG 61.976 60.000 0.00 0.00 0.00 3.69
2952 5892 3.083349 TGGGTGATGCGGAGGAGG 61.083 66.667 0.00 0.00 0.00 4.30
2953 5893 2.764128 GGGTGATGCGGAGGAGGA 60.764 66.667 0.00 0.00 0.00 3.71
2954 5894 2.367202 GGGTGATGCGGAGGAGGAA 61.367 63.158 0.00 0.00 0.00 3.36
2955 5895 1.144936 GGTGATGCGGAGGAGGAAG 59.855 63.158 0.00 0.00 0.00 3.46
2956 5896 1.330655 GGTGATGCGGAGGAGGAAGA 61.331 60.000 0.00 0.00 0.00 2.87
2957 5897 0.179097 GTGATGCGGAGGAGGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
2958 5898 1.330655 TGATGCGGAGGAGGAAGACC 61.331 60.000 0.00 0.00 0.00 3.85
2959 5899 2.034048 GATGCGGAGGAGGAAGACCC 62.034 65.000 0.00 0.00 36.73 4.46
2960 5900 2.683933 GCGGAGGAGGAAGACCCA 60.684 66.667 0.00 0.00 37.41 4.51
2961 5901 2.291043 GCGGAGGAGGAAGACCCAA 61.291 63.158 0.00 0.00 37.41 4.12
2962 5902 1.838073 GCGGAGGAGGAAGACCCAAA 61.838 60.000 0.00 0.00 37.41 3.28
2963 5903 0.912486 CGGAGGAGGAAGACCCAAAT 59.088 55.000 0.00 0.00 37.41 2.32
2964 5904 1.407437 CGGAGGAGGAAGACCCAAATG 60.407 57.143 0.00 0.00 37.41 2.32
2965 5905 1.916181 GGAGGAGGAAGACCCAAATGA 59.084 52.381 0.00 0.00 37.41 2.57
2966 5906 2.308866 GGAGGAGGAAGACCCAAATGAA 59.691 50.000 0.00 0.00 37.41 2.57
2967 5907 3.053320 GGAGGAGGAAGACCCAAATGAAT 60.053 47.826 0.00 0.00 37.41 2.57
2968 5908 4.166144 GGAGGAGGAAGACCCAAATGAATA 59.834 45.833 0.00 0.00 37.41 1.75
2969 5909 5.340027 GGAGGAGGAAGACCCAAATGAATAA 60.340 44.000 0.00 0.00 37.41 1.40
2970 5910 5.760131 AGGAGGAAGACCCAAATGAATAAG 58.240 41.667 0.00 0.00 37.41 1.73
2971 5911 4.889995 GGAGGAAGACCCAAATGAATAAGG 59.110 45.833 0.00 0.00 37.41 2.69
2972 5912 4.281657 AGGAAGACCCAAATGAATAAGGC 58.718 43.478 0.00 0.00 37.41 4.35
2973 5913 3.066760 GGAAGACCCAAATGAATAAGGCG 59.933 47.826 0.00 0.00 34.14 5.52
2974 5914 3.644966 AGACCCAAATGAATAAGGCGA 57.355 42.857 0.00 0.00 0.00 5.54
2975 5915 3.279434 AGACCCAAATGAATAAGGCGAC 58.721 45.455 0.00 0.00 0.00 5.19
2976 5916 2.014128 ACCCAAATGAATAAGGCGACG 58.986 47.619 0.00 0.00 0.00 5.12
2977 5917 2.285083 CCCAAATGAATAAGGCGACGA 58.715 47.619 0.00 0.00 0.00 4.20
2978 5918 2.287915 CCCAAATGAATAAGGCGACGAG 59.712 50.000 0.00 0.00 0.00 4.18
2979 5919 2.287915 CCAAATGAATAAGGCGACGAGG 59.712 50.000 0.00 0.00 0.00 4.63
2980 5920 3.194861 CAAATGAATAAGGCGACGAGGA 58.805 45.455 0.00 0.00 0.00 3.71
2981 5921 2.802787 ATGAATAAGGCGACGAGGAG 57.197 50.000 0.00 0.00 0.00 3.69
2982 5922 0.102481 TGAATAAGGCGACGAGGAGC 59.898 55.000 0.00 0.00 0.00 4.70
2983 5923 0.102481 GAATAAGGCGACGAGGAGCA 59.898 55.000 0.00 0.00 34.54 4.26
2984 5924 0.179108 AATAAGGCGACGAGGAGCAC 60.179 55.000 0.00 0.00 34.54 4.40
2985 5925 1.038130 ATAAGGCGACGAGGAGCACT 61.038 55.000 0.00 0.00 34.54 4.40
2986 5926 0.393402 TAAGGCGACGAGGAGCACTA 60.393 55.000 0.00 0.00 34.54 2.74
2987 5927 1.658686 AAGGCGACGAGGAGCACTAG 61.659 60.000 0.00 0.00 34.54 2.57
2988 5928 2.409651 GCGACGAGGAGCACTAGG 59.590 66.667 0.00 0.00 0.00 3.02
2989 5929 2.113433 GCGACGAGGAGCACTAGGA 61.113 63.158 0.00 0.00 0.00 2.94
2990 5930 1.654954 GCGACGAGGAGCACTAGGAA 61.655 60.000 0.00 0.00 0.00 3.36
2991 5931 0.378962 CGACGAGGAGCACTAGGAAG 59.621 60.000 0.00 0.00 0.00 3.46
2992 5932 0.101579 GACGAGGAGCACTAGGAAGC 59.898 60.000 0.00 0.00 0.00 3.86
2993 5933 1.324005 ACGAGGAGCACTAGGAAGCC 61.324 60.000 0.00 0.00 0.00 4.35
2994 5934 1.040339 CGAGGAGCACTAGGAAGCCT 61.040 60.000 0.00 0.00 37.71 4.58
2995 5935 1.199615 GAGGAGCACTAGGAAGCCTT 58.800 55.000 0.00 0.00 34.61 4.35
2996 5936 1.138069 GAGGAGCACTAGGAAGCCTTC 59.862 57.143 0.00 0.00 34.61 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.841237 TGGGATAAGGAAAATGTTGGACAAA 59.159 36.000 0.00 0.00 0.00 2.83
2 3 5.004361 TGGGATAAGGAAAATGTTGGACA 57.996 39.130 0.00 0.00 0.00 4.02
3 4 4.402474 CCTGGGATAAGGAAAATGTTGGAC 59.598 45.833 0.00 0.00 40.02 4.02
4 5 4.045334 ACCTGGGATAAGGAAAATGTTGGA 59.955 41.667 0.00 0.00 40.02 3.53
5 6 4.352893 ACCTGGGATAAGGAAAATGTTGG 58.647 43.478 0.00 0.00 40.02 3.77
6 7 6.358974 AAACCTGGGATAAGGAAAATGTTG 57.641 37.500 0.00 0.00 40.02 3.33
7 8 6.328934 ACAAAACCTGGGATAAGGAAAATGTT 59.671 34.615 0.00 0.00 40.02 2.71
11 12 5.459505 TGACAAAACCTGGGATAAGGAAAA 58.540 37.500 0.00 0.00 40.02 2.29
12 13 5.068215 TGACAAAACCTGGGATAAGGAAA 57.932 39.130 0.00 0.00 40.02 3.13
13 14 4.733077 TGACAAAACCTGGGATAAGGAA 57.267 40.909 0.00 0.00 40.02 3.36
15 16 5.133221 CCTATGACAAAACCTGGGATAAGG 58.867 45.833 0.00 0.00 43.57 2.69
16 17 5.104109 TCCCTATGACAAAACCTGGGATAAG 60.104 44.000 0.00 0.00 37.36 1.73
20 21 2.638325 TCCCTATGACAAAACCTGGGA 58.362 47.619 0.00 0.00 39.66 4.37
21 22 3.449746 TTCCCTATGACAAAACCTGGG 57.550 47.619 0.00 0.00 34.76 4.45
22 23 3.763897 CCTTTCCCTATGACAAAACCTGG 59.236 47.826 0.00 0.00 0.00 4.45
23 24 4.218417 CACCTTTCCCTATGACAAAACCTG 59.782 45.833 0.00 0.00 0.00 4.00
24 25 4.141018 ACACCTTTCCCTATGACAAAACCT 60.141 41.667 0.00 0.00 0.00 3.50
25 26 4.022329 CACACCTTTCCCTATGACAAAACC 60.022 45.833 0.00 0.00 0.00 3.27
27 28 4.825085 GTCACACCTTTCCCTATGACAAAA 59.175 41.667 0.00 0.00 37.11 2.44
29 30 3.392947 TGTCACACCTTTCCCTATGACAA 59.607 43.478 2.54 0.00 42.44 3.18
31 32 3.600388 CTGTCACACCTTTCCCTATGAC 58.400 50.000 0.00 0.00 37.54 3.06
34 35 2.237392 GAGCTGTCACACCTTTCCCTAT 59.763 50.000 0.00 0.00 0.00 2.57
36 37 0.398318 GAGCTGTCACACCTTTCCCT 59.602 55.000 0.00 0.00 0.00 4.20
37 38 0.606673 GGAGCTGTCACACCTTTCCC 60.607 60.000 0.00 0.00 0.00 3.97
38 39 0.606673 GGGAGCTGTCACACCTTTCC 60.607 60.000 0.00 0.00 0.00 3.13
39 40 0.951040 CGGGAGCTGTCACACCTTTC 60.951 60.000 0.00 0.00 0.00 2.62
41 42 2.743718 CGGGAGCTGTCACACCTT 59.256 61.111 0.00 0.00 0.00 3.50
42 43 3.314331 CCGGGAGCTGTCACACCT 61.314 66.667 0.00 0.00 0.00 4.00
43 44 4.394712 CCCGGGAGCTGTCACACC 62.395 72.222 18.48 0.00 0.00 4.16
44 45 3.626924 ACCCGGGAGCTGTCACAC 61.627 66.667 32.02 0.00 0.00 3.82
45 46 3.625897 CACCCGGGAGCTGTCACA 61.626 66.667 32.02 0.00 0.00 3.58
48 49 4.767255 CTGCACCCGGGAGCTGTC 62.767 72.222 37.52 17.77 33.00 3.51
65 66 1.379044 CTGTTCATGAGGGTGCCCC 60.379 63.158 3.17 2.16 45.90 5.80
66 67 0.618458 TACTGTTCATGAGGGTGCCC 59.382 55.000 0.00 0.00 0.00 5.36
67 68 2.084546 GTTACTGTTCATGAGGGTGCC 58.915 52.381 0.00 0.00 0.00 5.01
69 70 4.641396 TGAAGTTACTGTTCATGAGGGTG 58.359 43.478 0.00 0.00 0.00 4.61
71 72 5.530915 TGTTTGAAGTTACTGTTCATGAGGG 59.469 40.000 0.00 0.00 33.95 4.30
72 73 6.618287 TGTTTGAAGTTACTGTTCATGAGG 57.382 37.500 0.00 0.00 33.95 3.86
114 115 7.089106 TGATCCCCCAAAATTTCAGATTTTT 57.911 32.000 0.00 0.00 0.00 1.94
115 116 6.700845 TGATCCCCCAAAATTTCAGATTTT 57.299 33.333 0.00 0.00 0.00 1.82
116 117 6.700845 TTGATCCCCCAAAATTTCAGATTT 57.299 33.333 0.00 0.00 0.00 2.17
119 120 7.622878 TCATATTTGATCCCCCAAAATTTCAGA 59.377 33.333 0.00 0.00 39.20 3.27
120 121 7.794041 TCATATTTGATCCCCCAAAATTTCAG 58.206 34.615 0.00 0.00 39.20 3.02
121 122 7.746243 TCATATTTGATCCCCCAAAATTTCA 57.254 32.000 0.00 0.00 39.20 2.69
126 127 9.278011 AGTTTTATCATATTTGATCCCCCAAAA 57.722 29.630 1.58 1.72 41.73 2.44
128 129 8.852671 AAGTTTTATCATATTTGATCCCCCAA 57.147 30.769 1.58 0.00 41.73 4.12
129 130 8.852671 AAAGTTTTATCATATTTGATCCCCCA 57.147 30.769 1.58 0.00 41.73 4.96
130 131 9.546428 CAAAAGTTTTATCATATTTGATCCCCC 57.454 33.333 1.58 0.00 41.73 5.40
143 144 8.484641 TTGCAACAACATCAAAAGTTTTATCA 57.515 26.923 0.00 0.00 0.00 2.15
144 145 9.934190 ATTTGCAACAACATCAAAAGTTTTATC 57.066 25.926 0.00 0.00 34.00 1.75
147 148 9.473640 AAAATTTGCAACAACATCAAAAGTTTT 57.526 22.222 0.00 0.00 34.00 2.43
149 150 8.295288 TGAAAATTTGCAACAACATCAAAAGTT 58.705 25.926 0.00 0.00 34.00 2.66
150 151 7.814642 TGAAAATTTGCAACAACATCAAAAGT 58.185 26.923 0.00 0.00 34.00 2.66
153 154 6.256686 GCTGAAAATTTGCAACAACATCAAA 58.743 32.000 0.00 0.00 34.68 2.69
154 155 5.220815 GGCTGAAAATTTGCAACAACATCAA 60.221 36.000 0.00 0.00 0.00 2.57
156 157 4.272991 TGGCTGAAAATTTGCAACAACATC 59.727 37.500 0.00 0.00 0.00 3.06
157 158 4.197750 TGGCTGAAAATTTGCAACAACAT 58.802 34.783 0.00 0.00 0.00 2.71
158 159 3.603532 TGGCTGAAAATTTGCAACAACA 58.396 36.364 0.00 0.00 0.00 3.33
159 160 3.870419 TCTGGCTGAAAATTTGCAACAAC 59.130 39.130 0.00 0.00 0.00 3.32
160 161 4.134379 TCTGGCTGAAAATTTGCAACAA 57.866 36.364 0.00 0.00 0.00 2.83
161 162 3.815856 TCTGGCTGAAAATTTGCAACA 57.184 38.095 0.00 2.02 0.00 3.33
162 163 5.678132 ATTTCTGGCTGAAAATTTGCAAC 57.322 34.783 21.00 0.00 46.32 4.17
163 164 6.765036 TGTTATTTCTGGCTGAAAATTTGCAA 59.235 30.769 21.00 0.00 46.32 4.08
165 166 6.424812 AGTGTTATTTCTGGCTGAAAATTTGC 59.575 34.615 21.00 12.51 46.32 3.68
166 167 7.148918 CGAGTGTTATTTCTGGCTGAAAATTTG 60.149 37.037 21.00 4.66 46.32 2.32
167 168 6.863126 CGAGTGTTATTTCTGGCTGAAAATTT 59.137 34.615 21.00 9.53 46.32 1.82
168 169 6.206634 TCGAGTGTTATTTCTGGCTGAAAATT 59.793 34.615 21.00 10.16 46.32 1.82
173 174 3.368427 CCTCGAGTGTTATTTCTGGCTGA 60.368 47.826 12.31 0.00 0.00 4.26
175 176 2.832129 TCCTCGAGTGTTATTTCTGGCT 59.168 45.455 12.31 0.00 0.00 4.75
176 177 3.190874 CTCCTCGAGTGTTATTTCTGGC 58.809 50.000 12.31 0.00 0.00 4.85
177 178 3.190874 GCTCCTCGAGTGTTATTTCTGG 58.809 50.000 12.31 0.00 31.39 3.86
178 179 3.190874 GGCTCCTCGAGTGTTATTTCTG 58.809 50.000 12.31 0.00 31.39 3.02
179 180 2.168728 GGGCTCCTCGAGTGTTATTTCT 59.831 50.000 12.31 0.00 31.39 2.52
180 181 2.168728 AGGGCTCCTCGAGTGTTATTTC 59.831 50.000 12.31 0.00 31.39 2.17
181 182 2.168728 GAGGGCTCCTCGAGTGTTATTT 59.831 50.000 12.31 0.00 41.08 1.40
182 183 1.757699 GAGGGCTCCTCGAGTGTTATT 59.242 52.381 12.31 0.00 41.08 1.40
183 184 1.404843 GAGGGCTCCTCGAGTGTTAT 58.595 55.000 12.31 0.00 41.08 1.89
184 185 2.883572 GAGGGCTCCTCGAGTGTTA 58.116 57.895 12.31 0.00 41.08 2.41
208 209 9.135843 GTAGTTTTGAGCAGTAGTTTTGTTTTT 57.864 29.630 0.00 0.00 0.00 1.94
209 210 8.301002 TGTAGTTTTGAGCAGTAGTTTTGTTTT 58.699 29.630 0.00 0.00 0.00 2.43
210 211 7.753580 GTGTAGTTTTGAGCAGTAGTTTTGTTT 59.246 33.333 0.00 0.00 0.00 2.83
211 212 7.094549 TGTGTAGTTTTGAGCAGTAGTTTTGTT 60.095 33.333 0.00 0.00 0.00 2.83
213 214 6.781138 TGTGTAGTTTTGAGCAGTAGTTTTG 58.219 36.000 0.00 0.00 0.00 2.44
214 215 6.995511 TGTGTAGTTTTGAGCAGTAGTTTT 57.004 33.333 0.00 0.00 0.00 2.43
215 216 8.557029 GTTATGTGTAGTTTTGAGCAGTAGTTT 58.443 33.333 0.00 0.00 0.00 2.66
216 217 7.931948 AGTTATGTGTAGTTTTGAGCAGTAGTT 59.068 33.333 0.00 0.00 0.00 2.24
217 218 7.442656 AGTTATGTGTAGTTTTGAGCAGTAGT 58.557 34.615 0.00 0.00 0.00 2.73
218 219 7.891183 AGTTATGTGTAGTTTTGAGCAGTAG 57.109 36.000 0.00 0.00 0.00 2.57
219 220 8.556194 CAAAGTTATGTGTAGTTTTGAGCAGTA 58.444 33.333 0.00 0.00 0.00 2.74
220 221 7.282224 TCAAAGTTATGTGTAGTTTTGAGCAGT 59.718 33.333 0.00 0.00 32.58 4.40
225 226 8.952278 AGTGTTCAAAGTTATGTGTAGTTTTGA 58.048 29.630 0.00 0.00 34.00 2.69
226 227 9.009327 CAGTGTTCAAAGTTATGTGTAGTTTTG 57.991 33.333 0.00 0.00 0.00 2.44
228 229 8.500753 TCAGTGTTCAAAGTTATGTGTAGTTT 57.499 30.769 0.00 0.00 0.00 2.66
229 230 8.677148 ATCAGTGTTCAAAGTTATGTGTAGTT 57.323 30.769 0.00 0.00 0.00 2.24
230 231 8.677148 AATCAGTGTTCAAAGTTATGTGTAGT 57.323 30.769 0.00 0.00 0.00 2.73
232 233 9.729023 CAAAATCAGTGTTCAAAGTTATGTGTA 57.271 29.630 0.00 0.00 0.00 2.90
270 271 2.270352 AAACATTCGTGAAGCCCTCA 57.730 45.000 0.00 0.00 0.00 3.86
271 272 3.643159 AAAAACATTCGTGAAGCCCTC 57.357 42.857 0.00 0.00 0.00 4.30
288 289 7.783090 TCATGCAAAGTTTTAGCATCAAAAA 57.217 28.000 9.76 0.00 46.39 1.94
289 290 7.516470 CGTTCATGCAAAGTTTTAGCATCAAAA 60.516 33.333 9.76 4.12 46.39 2.44
290 291 6.074409 CGTTCATGCAAAGTTTTAGCATCAAA 60.074 34.615 9.76 6.03 46.39 2.69
291 292 5.401972 CGTTCATGCAAAGTTTTAGCATCAA 59.598 36.000 9.76 2.49 46.39 2.57
293 294 4.917415 ACGTTCATGCAAAGTTTTAGCATC 59.083 37.500 9.76 0.96 46.39 3.91
297 298 6.804534 TTCAACGTTCATGCAAAGTTTTAG 57.195 33.333 0.00 0.00 34.80 1.85
299 300 5.580297 ACATTCAACGTTCATGCAAAGTTTT 59.420 32.000 14.35 0.00 34.80 2.43
300 301 5.108517 ACATTCAACGTTCATGCAAAGTTT 58.891 33.333 14.35 0.00 34.80 2.66
302 303 4.305989 ACATTCAACGTTCATGCAAAGT 57.694 36.364 14.35 0.00 0.00 2.66
303 304 5.231779 TCAAACATTCAACGTTCATGCAAAG 59.768 36.000 14.35 5.46 0.00 2.77
304 305 5.105063 TCAAACATTCAACGTTCATGCAAA 58.895 33.333 14.35 0.00 0.00 3.68
305 306 4.676546 TCAAACATTCAACGTTCATGCAA 58.323 34.783 14.35 0.00 0.00 4.08
307 308 4.916831 TGATCAAACATTCAACGTTCATGC 59.083 37.500 14.35 1.76 0.00 4.06
310 311 9.127006 CAAATATGATCAAACATTCAACGTTCA 57.873 29.630 0.00 0.00 0.00 3.18
328 329 8.119246 TCTAAAACTTTGGGGGATCAAATATGA 58.881 33.333 0.00 0.00 40.57 2.15
329 330 8.305046 TCTAAAACTTTGGGGGATCAAATATG 57.695 34.615 0.00 0.00 36.24 1.78
330 331 9.506042 AATCTAAAACTTTGGGGGATCAAATAT 57.494 29.630 0.00 0.00 36.24 1.28
331 332 8.909423 AATCTAAAACTTTGGGGGATCAAATA 57.091 30.769 0.00 0.00 36.24 1.40
332 333 7.813087 AATCTAAAACTTTGGGGGATCAAAT 57.187 32.000 0.00 0.00 36.24 2.32
334 335 7.625498 AAAATCTAAAACTTTGGGGGATCAA 57.375 32.000 0.00 0.00 0.00 2.57
335 336 7.625498 AAAAATCTAAAACTTTGGGGGATCA 57.375 32.000 0.00 0.00 0.00 2.92
372 373 9.926158 ATGAACAGTAAATGCAAAACAATATGA 57.074 25.926 0.00 0.00 0.00 2.15
373 374 9.961266 CATGAACAGTAAATGCAAAACAATATG 57.039 29.630 0.00 0.00 0.00 1.78
374 375 9.926158 TCATGAACAGTAAATGCAAAACAATAT 57.074 25.926 0.00 0.00 0.00 1.28
375 376 9.409312 CTCATGAACAGTAAATGCAAAACAATA 57.591 29.630 0.00 0.00 0.00 1.90
377 378 6.700960 CCTCATGAACAGTAAATGCAAAACAA 59.299 34.615 0.00 0.00 0.00 2.83
378 379 6.215121 CCTCATGAACAGTAAATGCAAAACA 58.785 36.000 0.00 0.00 0.00 2.83
379 380 5.634859 CCCTCATGAACAGTAAATGCAAAAC 59.365 40.000 0.00 0.00 0.00 2.43
380 381 5.304101 ACCCTCATGAACAGTAAATGCAAAA 59.696 36.000 0.00 0.00 0.00 2.44
381 382 4.832266 ACCCTCATGAACAGTAAATGCAAA 59.168 37.500 0.00 0.00 0.00 3.68
382 383 4.218200 CACCCTCATGAACAGTAAATGCAA 59.782 41.667 0.00 0.00 0.00 4.08
384 385 3.428045 GCACCCTCATGAACAGTAAATGC 60.428 47.826 0.00 0.00 0.00 3.56
385 386 3.129287 GGCACCCTCATGAACAGTAAATG 59.871 47.826 0.00 0.00 0.00 2.32
386 387 3.356290 GGCACCCTCATGAACAGTAAAT 58.644 45.455 0.00 0.00 0.00 1.40
387 388 2.790433 GGCACCCTCATGAACAGTAAA 58.210 47.619 0.00 0.00 0.00 2.01
410 411 3.551496 CTTTCAGCTCCCGGGTGCA 62.551 63.158 40.44 24.04 42.57 4.57
411 412 2.747855 CTTTCAGCTCCCGGGTGC 60.748 66.667 35.10 35.10 42.57 5.01
412 413 1.376037 GACTTTCAGCTCCCGGGTG 60.376 63.158 22.86 20.53 44.04 4.61
414 415 2.269241 GGACTTTCAGCTCCCGGG 59.731 66.667 16.85 16.85 0.00 5.73
415 416 1.078848 CTGGACTTTCAGCTCCCGG 60.079 63.158 0.00 0.00 0.00 5.73
416 417 0.390472 GACTGGACTTTCAGCTCCCG 60.390 60.000 0.00 0.00 38.26 5.14
420 421 3.135530 ACAAAGAGACTGGACTTTCAGCT 59.864 43.478 0.00 0.00 38.26 4.24
422 423 4.697514 TGACAAAGAGACTGGACTTTCAG 58.302 43.478 0.00 0.00 40.40 3.02
425 426 6.876257 GTGATATGACAAAGAGACTGGACTTT 59.124 38.462 0.00 0.00 36.89 2.66
426 427 6.402222 GTGATATGACAAAGAGACTGGACTT 58.598 40.000 0.00 0.00 0.00 3.01
428 429 4.800993 CGTGATATGACAAAGAGACTGGAC 59.199 45.833 0.00 0.00 0.00 4.02
429 430 4.462834 ACGTGATATGACAAAGAGACTGGA 59.537 41.667 0.00 0.00 0.00 3.86
430 431 4.748892 ACGTGATATGACAAAGAGACTGG 58.251 43.478 0.00 0.00 0.00 4.00
431 432 6.021390 CGTTACGTGATATGACAAAGAGACTG 60.021 42.308 0.00 0.00 0.00 3.51
432 433 6.028368 CGTTACGTGATATGACAAAGAGACT 58.972 40.000 0.00 0.00 0.00 3.24
434 435 5.337554 CCGTTACGTGATATGACAAAGAGA 58.662 41.667 3.52 0.00 0.00 3.10
435 436 4.026804 GCCGTTACGTGATATGACAAAGAG 60.027 45.833 3.52 0.00 0.00 2.85
437 438 3.615056 TGCCGTTACGTGATATGACAAAG 59.385 43.478 3.52 0.00 0.00 2.77
438 439 3.586892 TGCCGTTACGTGATATGACAAA 58.413 40.909 3.52 0.00 0.00 2.83
439 440 3.233684 TGCCGTTACGTGATATGACAA 57.766 42.857 3.52 0.00 0.00 3.18
440 441 2.943449 TGCCGTTACGTGATATGACA 57.057 45.000 3.52 0.00 0.00 3.58
441 442 7.194278 AGATATATGCCGTTACGTGATATGAC 58.806 38.462 3.52 4.44 0.00 3.06
442 443 7.329588 AGATATATGCCGTTACGTGATATGA 57.670 36.000 3.52 0.00 0.00 2.15
443 444 8.343366 AGTAGATATATGCCGTTACGTGATATG 58.657 37.037 3.52 0.00 0.00 1.78
444 445 8.447924 AGTAGATATATGCCGTTACGTGATAT 57.552 34.615 3.52 7.38 0.00 1.63
445 446 7.011763 GGAGTAGATATATGCCGTTACGTGATA 59.988 40.741 3.52 0.00 0.00 2.15
447 448 5.122869 GGAGTAGATATATGCCGTTACGTGA 59.877 44.000 3.52 0.00 0.00 4.35
448 449 5.123502 AGGAGTAGATATATGCCGTTACGTG 59.876 44.000 3.52 0.00 0.00 4.49
450 451 5.814764 AGGAGTAGATATATGCCGTTACG 57.185 43.478 0.00 0.00 0.00 3.18
452 453 8.683615 CATTGTAGGAGTAGATATATGCCGTTA 58.316 37.037 0.00 0.00 0.00 3.18
453 454 7.363880 CCATTGTAGGAGTAGATATATGCCGTT 60.364 40.741 0.00 0.00 0.00 4.44
454 455 6.096987 CCATTGTAGGAGTAGATATATGCCGT 59.903 42.308 0.00 0.00 0.00 5.68
455 456 6.096987 ACCATTGTAGGAGTAGATATATGCCG 59.903 42.308 0.00 0.00 0.00 5.69
456 457 7.425224 ACCATTGTAGGAGTAGATATATGCC 57.575 40.000 0.00 0.00 0.00 4.40
458 459 8.622157 CCGTACCATTGTAGGAGTAGATATATG 58.378 40.741 0.00 0.00 35.36 1.78
459 460 8.554870 TCCGTACCATTGTAGGAGTAGATATAT 58.445 37.037 0.00 0.00 35.36 0.86
460 461 7.921304 TCCGTACCATTGTAGGAGTAGATATA 58.079 38.462 0.00 0.00 35.36 0.86
462 463 6.191657 TCCGTACCATTGTAGGAGTAGATA 57.808 41.667 0.00 0.00 35.36 1.98
463 464 5.057843 TCCGTACCATTGTAGGAGTAGAT 57.942 43.478 0.00 0.00 35.36 1.98
464 465 4.508551 TCCGTACCATTGTAGGAGTAGA 57.491 45.455 0.00 0.00 35.36 2.59
465 466 5.786264 AATCCGTACCATTGTAGGAGTAG 57.214 43.478 0.00 0.00 35.36 2.57
468 469 5.050490 CAGAAATCCGTACCATTGTAGGAG 58.950 45.833 0.00 0.00 35.36 3.69
469 470 4.468510 ACAGAAATCCGTACCATTGTAGGA 59.531 41.667 0.00 0.00 35.36 2.94
470 471 4.766375 ACAGAAATCCGTACCATTGTAGG 58.234 43.478 0.00 0.00 33.60 3.18
479 480 9.609950 GTATGATAAGAGTACAGAAATCCGTAC 57.390 37.037 0.00 0.00 38.61 3.67
490 491 9.755122 ATGCCTATACAGTATGATAAGAGTACA 57.245 33.333 3.03 0.00 39.69 2.90
511 512 8.088981 CGTTTATCTATCCAAGTAACTATGCCT 58.911 37.037 0.00 0.00 0.00 4.75
589 595 3.476552 TGAAACGATCTCCTGCAAGTTT 58.523 40.909 0.00 0.00 34.95 2.66
599 605 5.755375 TCAGGCTAATCAATGAAACGATCTC 59.245 40.000 0.00 0.00 0.00 2.75
608 614 5.070847 TCTGCAGTATCAGGCTAATCAATGA 59.929 40.000 14.67 0.00 34.91 2.57
643 649 1.124780 GGAGGGGAGCTTCCTAGAAC 58.875 60.000 11.94 0.00 36.57 3.01
647 653 2.286935 AATTGGAGGGGAGCTTCCTA 57.713 50.000 11.94 0.00 36.57 2.94
751 758 6.441093 AACTTACATGCATGGTTATCACTG 57.559 37.500 29.41 11.37 0.00 3.66
754 761 7.282224 GGAGTAAACTTACATGCATGGTTATCA 59.718 37.037 29.41 10.65 36.12 2.15
804 811 4.540502 ACCTTTGCTTCCTTCTAGGGTTAT 59.459 41.667 0.00 0.00 35.59 1.89
836 843 2.212812 TGTCCATTGTATGCCAGCAA 57.787 45.000 0.00 0.00 0.00 3.91
844 851 9.528489 AAGTAAACTGGTTAATGTCCATTGTAT 57.472 29.630 2.80 0.00 34.26 2.29
854 861 5.858581 GCAGCTGAAAGTAAACTGGTTAATG 59.141 40.000 20.43 0.00 35.30 1.90
870 877 1.664649 CGACGACTTGGCAGCTGAA 60.665 57.895 20.43 2.25 0.00 3.02
928 936 3.127030 GGGTTCTTTCTTATGTCAAGCGG 59.873 47.826 0.00 0.00 0.00 5.52
962 974 5.115480 TGCAAATGTATGTTCGAGCATCTA 58.885 37.500 18.60 9.20 0.00 1.98
964 976 4.277257 TGCAAATGTATGTTCGAGCATC 57.723 40.909 18.60 10.69 0.00 3.91
966 978 3.750652 TCTTGCAAATGTATGTTCGAGCA 59.249 39.130 3.86 3.86 0.00 4.26
971 988 6.127925 TGAGGTGATCTTGCAAATGTATGTTC 60.128 38.462 0.00 0.00 0.00 3.18
975 992 6.682113 GCATTGAGGTGATCTTGCAAATGTAT 60.682 38.462 0.00 0.00 37.56 2.29
1005 1022 6.529084 AGACCATGGAAATGAATGGGTATA 57.471 37.500 21.47 0.00 46.45 1.47
1387 1404 4.717877 TGCATAAGAATCACCACCATAGG 58.282 43.478 0.00 0.00 0.00 2.57
1388 1405 4.758674 CCTGCATAAGAATCACCACCATAG 59.241 45.833 0.00 0.00 0.00 2.23
1526 1543 3.902261 TTAGCATTGGCATTCGCATAG 57.098 42.857 6.15 0.00 44.61 2.23
1538 1555 3.275143 TCCACCGTTACCATTAGCATTG 58.725 45.455 0.00 0.00 0.00 2.82
1601 1618 1.995626 ATTACCGCTGCCACCTCCT 60.996 57.895 0.00 0.00 0.00 3.69
1791 1812 1.228831 CACAAGTTGATGGGGCCCA 60.229 57.895 30.97 30.97 38.19 5.36
1902 3229 1.067354 GCTTGGTTTCCAGCATTCCAG 60.067 52.381 0.00 0.00 33.81 3.86
1903 3230 0.968405 GCTTGGTTTCCAGCATTCCA 59.032 50.000 0.00 0.00 33.81 3.53
1904 3231 0.247460 GGCTTGGTTTCCAGCATTCC 59.753 55.000 10.50 0.00 33.81 3.01
1905 3232 0.247460 GGGCTTGGTTTCCAGCATTC 59.753 55.000 10.50 0.00 33.81 2.67
1906 3233 1.194121 GGGGCTTGGTTTCCAGCATT 61.194 55.000 10.50 0.00 33.81 3.56
1907 3234 1.610379 GGGGCTTGGTTTCCAGCAT 60.610 57.895 10.50 0.00 33.81 3.79
1908 3235 2.203625 GGGGCTTGGTTTCCAGCA 60.204 61.111 10.50 0.00 33.81 4.41
1909 3236 1.533994 AAGGGGCTTGGTTTCCAGC 60.534 57.895 0.00 0.00 33.81 4.85
2070 3408 6.740905 GTCATTCTATTTCGCACGAAAATTGA 59.259 34.615 20.60 15.31 45.60 2.57
2117 3455 8.546597 ACCTCCAAATGTTACATTTATTTTGC 57.453 30.769 20.94 0.00 0.00 3.68
2124 3462 9.487790 CAAATGTTACCTCCAAATGTTACATTT 57.512 29.630 16.57 16.57 46.82 2.32
2125 3463 8.646900 ACAAATGTTACCTCCAAATGTTACATT 58.353 29.630 4.56 4.56 42.91 2.71
2126 3464 8.189119 ACAAATGTTACCTCCAAATGTTACAT 57.811 30.769 0.00 0.00 36.58 2.29
2189 3732 6.490381 CCTACAAATTTTTAGGAGGATAGCCC 59.510 42.308 21.22 0.00 37.64 5.19
2194 3737 6.766467 CGCTACCTACAAATTTTTAGGAGGAT 59.234 38.462 29.02 14.22 37.64 3.24
2211 3754 2.102757 TGTCACACCAAAACGCTACCTA 59.897 45.455 0.00 0.00 0.00 3.08
2277 3821 1.188863 GCTCCTGCCCATCAATTTGT 58.811 50.000 0.00 0.00 0.00 2.83
2280 3825 3.162666 CATATGCTCCTGCCCATCAATT 58.837 45.455 0.00 0.00 38.71 2.32
2281 3826 2.803956 CATATGCTCCTGCCCATCAAT 58.196 47.619 0.00 0.00 38.71 2.57
2313 3859 9.923143 CTGTATACTATACGGAAATCCAATTCA 57.077 33.333 8.82 0.00 35.14 2.57
2346 3892 7.201530 CCGAAATATTACGGCCTCATATTCTTC 60.202 40.741 0.00 1.54 42.55 2.87
2386 3932 7.486802 TTTTTCTACGCTTTTGCTAACTACT 57.513 32.000 0.00 0.00 44.80 2.57
2413 3959 1.202582 CCAACCCACACACGAAACAAA 59.797 47.619 0.00 0.00 0.00 2.83
2426 3972 1.155155 GCCTTTCCTTCCCAACCCA 59.845 57.895 0.00 0.00 0.00 4.51
2441 3987 2.957006 GCAATGATTGATTCAGAGGCCT 59.043 45.455 3.86 3.86 37.89 5.19
2448 3994 6.528774 CACGAAGAAATGCAATGATTGATTCA 59.471 34.615 9.76 0.00 39.12 2.57
2459 4005 4.566545 AACATCACACGAAGAAATGCAA 57.433 36.364 0.00 0.00 0.00 4.08
2463 4009 6.198966 GCAAAGAAAACATCACACGAAGAAAT 59.801 34.615 0.00 0.00 0.00 2.17
2511 4057 6.606234 TTTGTATTTGTATGTGTGACGTGT 57.394 33.333 0.00 0.00 0.00 4.49
2537 5476 8.589338 CCTACAAAGATATAGCTGGTAGTGAAT 58.411 37.037 20.11 0.00 30.59 2.57
2545 5484 7.094118 GGAGTAGACCTACAAAGATATAGCTGG 60.094 44.444 9.56 0.00 38.48 4.85
2558 5497 8.832735 AGGAAAATTTTATGGAGTAGACCTACA 58.167 33.333 2.75 0.00 38.77 2.74
2645 5585 7.364408 GGTGAGGTTACTGTAGGTTGATTATCA 60.364 40.741 0.00 0.00 0.00 2.15
2655 5595 6.518537 GCATATTAGGGTGAGGTTACTGTAGG 60.519 46.154 0.00 0.00 0.00 3.18
2689 5629 2.730934 AGTCACGGCTAGGAGACATA 57.269 50.000 0.00 0.00 33.32 2.29
2694 5634 5.657474 TGTAAAATAAGTCACGGCTAGGAG 58.343 41.667 0.00 0.00 0.00 3.69
2695 5635 5.664294 TGTAAAATAAGTCACGGCTAGGA 57.336 39.130 0.00 0.00 0.00 2.94
2696 5636 5.236478 CCATGTAAAATAAGTCACGGCTAGG 59.764 44.000 0.00 0.00 0.00 3.02
2697 5637 6.046593 TCCATGTAAAATAAGTCACGGCTAG 58.953 40.000 0.00 0.00 0.00 3.42
2698 5638 5.979993 TCCATGTAAAATAAGTCACGGCTA 58.020 37.500 0.00 0.00 0.00 3.93
2699 5639 4.839121 TCCATGTAAAATAAGTCACGGCT 58.161 39.130 0.00 0.00 0.00 5.52
2700 5640 5.295787 TGATCCATGTAAAATAAGTCACGGC 59.704 40.000 0.00 0.00 0.00 5.68
2701 5641 6.918892 TGATCCATGTAAAATAAGTCACGG 57.081 37.500 0.00 0.00 0.00 4.94
2702 5642 9.225201 CATTTGATCCATGTAAAATAAGTCACG 57.775 33.333 0.00 0.00 0.00 4.35
2703 5643 9.520204 CCATTTGATCCATGTAAAATAAGTCAC 57.480 33.333 0.00 0.00 0.00 3.67
2704 5644 8.694540 CCCATTTGATCCATGTAAAATAAGTCA 58.305 33.333 0.00 0.00 0.00 3.41
2705 5645 8.912988 TCCCATTTGATCCATGTAAAATAAGTC 58.087 33.333 0.00 0.00 0.00 3.01
2706 5646 8.837099 TCCCATTTGATCCATGTAAAATAAGT 57.163 30.769 0.00 0.00 0.00 2.24
2707 5647 9.701098 CATCCCATTTGATCCATGTAAAATAAG 57.299 33.333 0.00 0.00 0.00 1.73
2708 5648 9.211410 ACATCCCATTTGATCCATGTAAAATAA 57.789 29.630 0.00 0.00 0.00 1.40
2709 5649 8.780616 ACATCCCATTTGATCCATGTAAAATA 57.219 30.769 0.00 0.00 0.00 1.40
2710 5650 7.679732 ACATCCCATTTGATCCATGTAAAAT 57.320 32.000 0.00 0.00 0.00 1.82
2711 5651 7.179872 TCAACATCCCATTTGATCCATGTAAAA 59.820 33.333 0.00 0.00 0.00 1.52
2712 5652 6.666980 TCAACATCCCATTTGATCCATGTAAA 59.333 34.615 0.00 0.00 0.00 2.01
2713 5653 6.096705 GTCAACATCCCATTTGATCCATGTAA 59.903 38.462 0.00 0.00 34.34 2.41
2714 5654 5.593909 GTCAACATCCCATTTGATCCATGTA 59.406 40.000 0.00 0.00 34.34 2.29
2715 5655 4.403432 GTCAACATCCCATTTGATCCATGT 59.597 41.667 0.00 0.00 34.34 3.21
2716 5656 4.202182 GGTCAACATCCCATTTGATCCATG 60.202 45.833 0.00 0.00 34.34 3.66
2717 5657 3.962718 GGTCAACATCCCATTTGATCCAT 59.037 43.478 0.00 0.00 34.34 3.41
2718 5658 3.364549 GGTCAACATCCCATTTGATCCA 58.635 45.455 0.00 0.00 34.34 3.41
2719 5659 2.695147 GGGTCAACATCCCATTTGATCC 59.305 50.000 0.00 0.00 43.95 3.36
2720 5660 2.695147 GGGGTCAACATCCCATTTGATC 59.305 50.000 3.37 0.00 46.26 2.92
2721 5661 2.315763 AGGGGTCAACATCCCATTTGAT 59.684 45.455 3.37 0.00 46.26 2.57
2722 5662 1.715931 AGGGGTCAACATCCCATTTGA 59.284 47.619 3.37 0.00 46.26 2.69
2723 5663 1.826720 CAGGGGTCAACATCCCATTTG 59.173 52.381 3.37 0.00 46.26 2.32
2724 5664 1.896755 GCAGGGGTCAACATCCCATTT 60.897 52.381 3.37 0.00 46.26 2.32
2725 5665 0.324645 GCAGGGGTCAACATCCCATT 60.325 55.000 3.37 0.00 46.26 3.16
2726 5666 1.307647 GCAGGGGTCAACATCCCAT 59.692 57.895 3.37 0.00 46.26 4.00
2727 5667 2.763215 GCAGGGGTCAACATCCCA 59.237 61.111 3.37 0.00 46.26 4.37
2728 5668 2.043953 GGCAGGGGTCAACATCCC 60.044 66.667 0.00 0.00 43.90 3.85
2729 5669 0.967380 CTTGGCAGGGGTCAACATCC 60.967 60.000 0.00 0.00 32.69 3.51
2730 5670 0.251341 ACTTGGCAGGGGTCAACATC 60.251 55.000 0.44 0.00 32.69 3.06
2731 5671 0.188342 AACTTGGCAGGGGTCAACAT 59.812 50.000 0.44 0.00 32.69 2.71
2732 5672 0.467290 GAACTTGGCAGGGGTCAACA 60.467 55.000 0.44 0.00 32.69 3.33
2733 5673 1.179174 GGAACTTGGCAGGGGTCAAC 61.179 60.000 0.44 0.00 32.69 3.18
2734 5674 1.152830 GGAACTTGGCAGGGGTCAA 59.847 57.895 0.44 0.00 35.97 3.18
2735 5675 2.081787 TGGAACTTGGCAGGGGTCA 61.082 57.895 0.44 0.00 0.00 4.02
2736 5676 1.603739 GTGGAACTTGGCAGGGGTC 60.604 63.158 0.44 0.13 0.00 4.46
2737 5677 1.943730 TTGTGGAACTTGGCAGGGGT 61.944 55.000 0.44 0.00 38.04 4.95
2738 5678 0.758685 TTTGTGGAACTTGGCAGGGG 60.759 55.000 0.44 0.00 38.04 4.79
2739 5679 0.675633 CTTTGTGGAACTTGGCAGGG 59.324 55.000 0.44 0.00 38.04 4.45
2740 5680 0.675633 CCTTTGTGGAACTTGGCAGG 59.324 55.000 0.00 0.00 38.04 4.85
2741 5681 0.675633 CCCTTTGTGGAACTTGGCAG 59.324 55.000 0.00 0.00 38.04 4.85
2742 5682 0.758685 CCCCTTTGTGGAACTTGGCA 60.759 55.000 0.00 0.00 38.04 4.92
2743 5683 0.759060 ACCCCTTTGTGGAACTTGGC 60.759 55.000 0.00 0.00 38.04 4.52
2744 5684 1.133482 AGACCCCTTTGTGGAACTTGG 60.133 52.381 0.00 0.00 38.04 3.61
2745 5685 2.230660 GAGACCCCTTTGTGGAACTTG 58.769 52.381 0.00 0.00 38.04 3.16
2746 5686 1.850345 TGAGACCCCTTTGTGGAACTT 59.150 47.619 0.00 0.00 38.04 2.66
2747 5687 1.518367 TGAGACCCCTTTGTGGAACT 58.482 50.000 0.00 0.00 38.04 3.01
2748 5688 2.586648 ATGAGACCCCTTTGTGGAAC 57.413 50.000 0.00 0.00 38.35 3.62
2749 5689 2.716424 AGAATGAGACCCCTTTGTGGAA 59.284 45.455 0.00 0.00 38.35 3.53
2750 5690 2.305927 GAGAATGAGACCCCTTTGTGGA 59.694 50.000 0.00 0.00 38.35 4.02
2751 5691 2.716217 GAGAATGAGACCCCTTTGTGG 58.284 52.381 0.00 0.00 0.00 4.17
2752 5692 2.028112 TCGAGAATGAGACCCCTTTGTG 60.028 50.000 0.00 0.00 0.00 3.33
2753 5693 2.257207 TCGAGAATGAGACCCCTTTGT 58.743 47.619 0.00 0.00 0.00 2.83
2754 5694 3.550437 ATCGAGAATGAGACCCCTTTG 57.450 47.619 0.00 0.00 0.00 2.77
2755 5695 4.518249 GAAATCGAGAATGAGACCCCTTT 58.482 43.478 0.00 0.00 0.00 3.11
2756 5696 3.430929 CGAAATCGAGAATGAGACCCCTT 60.431 47.826 0.00 0.00 43.02 3.95
2757 5697 2.101582 CGAAATCGAGAATGAGACCCCT 59.898 50.000 0.00 0.00 43.02 4.79
2758 5698 2.100916 TCGAAATCGAGAATGAGACCCC 59.899 50.000 0.58 0.00 44.22 4.95
2759 5699 3.438297 TCGAAATCGAGAATGAGACCC 57.562 47.619 0.58 0.00 44.22 4.46
2770 5710 6.764436 GGATGCCTTCCTCTTCGAAATCGA 62.764 50.000 0.58 0.58 43.25 3.59
2771 5711 2.010145 TGCCTTCCTCTTCGAAATCG 57.990 50.000 0.00 0.00 41.45 3.34
2772 5712 2.875317 GGATGCCTTCCTCTTCGAAATC 59.125 50.000 0.00 0.00 41.78 2.17
2773 5713 2.239654 TGGATGCCTTCCTCTTCGAAAT 59.760 45.455 0.00 0.00 45.68 2.17
2774 5714 1.628340 TGGATGCCTTCCTCTTCGAAA 59.372 47.619 0.00 0.00 45.68 3.46
2775 5715 1.066143 GTGGATGCCTTCCTCTTCGAA 60.066 52.381 0.00 0.00 45.68 3.71
2776 5716 0.537188 GTGGATGCCTTCCTCTTCGA 59.463 55.000 4.59 0.00 45.68 3.71
2777 5717 0.807667 CGTGGATGCCTTCCTCTTCG 60.808 60.000 4.59 1.78 45.68 3.79
2778 5718 0.462759 CCGTGGATGCCTTCCTCTTC 60.463 60.000 4.59 0.00 45.68 2.87
2779 5719 1.604378 CCGTGGATGCCTTCCTCTT 59.396 57.895 4.59 0.00 45.68 2.85
2780 5720 2.370445 CCCGTGGATGCCTTCCTCT 61.370 63.158 4.59 0.00 45.68 3.69
2781 5721 2.190578 CCCGTGGATGCCTTCCTC 59.809 66.667 4.59 0.50 45.68 3.71
2782 5722 2.610859 ACCCGTGGATGCCTTCCT 60.611 61.111 4.59 0.00 45.68 3.36
2783 5723 2.124695 GACCCGTGGATGCCTTCC 60.125 66.667 0.00 0.00 45.69 3.46
2784 5724 2.511600 CGACCCGTGGATGCCTTC 60.512 66.667 0.00 0.00 0.00 3.46
2785 5725 4.096003 CCGACCCGTGGATGCCTT 62.096 66.667 0.00 0.00 0.00 4.35
2808 5748 1.903860 TGTACCAATACGCCAAGAGGT 59.096 47.619 0.00 0.00 37.19 3.85
2809 5749 2.684001 TGTACCAATACGCCAAGAGG 57.316 50.000 0.00 0.00 33.60 3.69
2810 5750 3.857052 TCTTGTACCAATACGCCAAGAG 58.143 45.455 0.00 0.00 37.27 2.85
2811 5751 3.965379 TCTTGTACCAATACGCCAAGA 57.035 42.857 0.00 0.00 39.21 3.02
2812 5752 4.730613 GCATTCTTGTACCAATACGCCAAG 60.731 45.833 0.00 0.00 33.60 3.61
2813 5753 3.127895 GCATTCTTGTACCAATACGCCAA 59.872 43.478 0.00 0.00 33.60 4.52
2814 5754 2.680841 GCATTCTTGTACCAATACGCCA 59.319 45.455 0.00 0.00 33.60 5.69
2815 5755 2.680841 TGCATTCTTGTACCAATACGCC 59.319 45.455 0.00 0.00 33.60 5.68
2816 5756 3.788797 GCTGCATTCTTGTACCAATACGC 60.789 47.826 0.00 0.00 33.60 4.42
2817 5757 3.623060 AGCTGCATTCTTGTACCAATACG 59.377 43.478 1.02 0.00 33.60 3.06
2818 5758 5.335127 CAAGCTGCATTCTTGTACCAATAC 58.665 41.667 16.41 0.00 36.93 1.89
2819 5759 4.142403 GCAAGCTGCATTCTTGTACCAATA 60.142 41.667 22.11 0.00 44.26 1.90
2820 5760 3.367703 GCAAGCTGCATTCTTGTACCAAT 60.368 43.478 22.11 0.00 44.26 3.16
2821 5761 2.030007 GCAAGCTGCATTCTTGTACCAA 60.030 45.455 22.11 0.00 44.26 3.67
2822 5762 1.541147 GCAAGCTGCATTCTTGTACCA 59.459 47.619 22.11 0.00 44.26 3.25
2823 5763 2.268730 GCAAGCTGCATTCTTGTACC 57.731 50.000 22.11 8.86 44.26 3.34
2834 5774 2.199236 GCAGGAATATTTGCAAGCTGC 58.801 47.619 7.16 0.00 45.29 5.25
2835 5775 3.513680 TGCAGGAATATTTGCAAGCTG 57.486 42.857 11.51 0.00 46.42 4.24
2841 5781 6.973229 ACATTTTTCTGCAGGAATATTTGC 57.027 33.333 15.13 5.35 40.67 3.68
2845 5785 9.638176 AGAGAATACATTTTTCTGCAGGAATAT 57.362 29.630 15.13 9.51 33.65 1.28
2847 5787 7.951347 AGAGAATACATTTTTCTGCAGGAAT 57.049 32.000 15.13 9.25 33.65 3.01
2848 5788 9.113838 GATAGAGAATACATTTTTCTGCAGGAA 57.886 33.333 15.13 9.08 33.65 3.36
2849 5789 8.267183 TGATAGAGAATACATTTTTCTGCAGGA 58.733 33.333 15.13 0.46 33.65 3.86
2850 5790 8.442632 TGATAGAGAATACATTTTTCTGCAGG 57.557 34.615 15.13 0.00 33.65 4.85
2851 5791 9.322773 TCTGATAGAGAATACATTTTTCTGCAG 57.677 33.333 7.63 7.63 33.65 4.41
2852 5792 9.671279 TTCTGATAGAGAATACATTTTTCTGCA 57.329 29.630 0.00 0.00 35.64 4.41
2869 5809 9.942850 TGAACATGTTAGATTGTTTCTGATAGA 57.057 29.630 11.95 0.00 36.25 1.98
2871 5811 9.166173 CCTGAACATGTTAGATTGTTTCTGATA 57.834 33.333 11.95 0.00 36.25 2.15
2872 5812 7.667219 ACCTGAACATGTTAGATTGTTTCTGAT 59.333 33.333 11.95 0.00 36.25 2.90
2873 5813 6.998074 ACCTGAACATGTTAGATTGTTTCTGA 59.002 34.615 11.95 0.00 36.25 3.27
2874 5814 7.206981 ACCTGAACATGTTAGATTGTTTCTG 57.793 36.000 11.95 0.00 36.25 3.02
2875 5815 8.784043 GTTACCTGAACATGTTAGATTGTTTCT 58.216 33.333 11.95 0.00 36.25 2.52
2876 5816 8.784043 AGTTACCTGAACATGTTAGATTGTTTC 58.216 33.333 11.95 0.00 40.86 2.78
2877 5817 8.691661 AGTTACCTGAACATGTTAGATTGTTT 57.308 30.769 11.95 0.00 40.86 2.83
2878 5818 7.936847 TGAGTTACCTGAACATGTTAGATTGTT 59.063 33.333 11.95 0.00 40.86 2.83
2879 5819 7.450074 TGAGTTACCTGAACATGTTAGATTGT 58.550 34.615 11.95 7.41 40.86 2.71
2880 5820 7.905604 TGAGTTACCTGAACATGTTAGATTG 57.094 36.000 11.95 1.54 40.86 2.67
2885 5825 9.996554 CCATATATGAGTTACCTGAACATGTTA 57.003 33.333 11.95 0.00 40.86 2.41
2886 5826 8.713971 TCCATATATGAGTTACCTGAACATGTT 58.286 33.333 11.78 11.78 40.86 2.71
2887 5827 8.262601 TCCATATATGAGTTACCTGAACATGT 57.737 34.615 14.54 0.00 40.86 3.21
2905 5845 9.363401 CGGGAGGTACTTAATCATATCCATATA 57.637 37.037 0.00 0.00 41.55 0.86
2906 5846 8.065627 TCGGGAGGTACTTAATCATATCCATAT 58.934 37.037 0.00 0.00 41.55 1.78
2907 5847 7.415908 TCGGGAGGTACTTAATCATATCCATA 58.584 38.462 0.00 0.00 41.55 2.74
2908 5848 6.261435 TCGGGAGGTACTTAATCATATCCAT 58.739 40.000 0.00 0.00 41.55 3.41
2909 5849 5.647230 TCGGGAGGTACTTAATCATATCCA 58.353 41.667 0.00 0.00 41.55 3.41
2910 5850 6.154706 ACATCGGGAGGTACTTAATCATATCC 59.845 42.308 0.00 0.00 41.55 2.59
2911 5851 7.036220 CACATCGGGAGGTACTTAATCATATC 58.964 42.308 0.00 0.00 41.55 1.63
2912 5852 6.070767 CCACATCGGGAGGTACTTAATCATAT 60.071 42.308 0.00 0.00 41.55 1.78
2913 5853 5.245301 CCACATCGGGAGGTACTTAATCATA 59.755 44.000 0.00 0.00 41.55 2.15
2914 5854 4.040461 CCACATCGGGAGGTACTTAATCAT 59.960 45.833 0.00 0.00 41.55 2.45
2915 5855 3.386726 CCACATCGGGAGGTACTTAATCA 59.613 47.826 0.00 0.00 41.55 2.57
2916 5856 3.991367 CCACATCGGGAGGTACTTAATC 58.009 50.000 0.00 0.00 41.55 1.75
2929 5869 2.896854 CCGCATCACCCACATCGG 60.897 66.667 0.00 0.00 0.00 4.18
2930 5870 1.884464 CTCCGCATCACCCACATCG 60.884 63.158 0.00 0.00 0.00 3.84
2931 5871 1.524621 CCTCCGCATCACCCACATC 60.525 63.158 0.00 0.00 0.00 3.06
2932 5872 1.976132 CTCCTCCGCATCACCCACAT 61.976 60.000 0.00 0.00 0.00 3.21
2933 5873 2.606213 TCCTCCGCATCACCCACA 60.606 61.111 0.00 0.00 0.00 4.17
2934 5874 2.187946 CTCCTCCGCATCACCCAC 59.812 66.667 0.00 0.00 0.00 4.61
2935 5875 3.083349 CCTCCTCCGCATCACCCA 61.083 66.667 0.00 0.00 0.00 4.51
2936 5876 2.317149 CTTCCTCCTCCGCATCACCC 62.317 65.000 0.00 0.00 0.00 4.61
2937 5877 1.144936 CTTCCTCCTCCGCATCACC 59.855 63.158 0.00 0.00 0.00 4.02
2938 5878 0.179097 GTCTTCCTCCTCCGCATCAC 60.179 60.000 0.00 0.00 0.00 3.06
2939 5879 1.330655 GGTCTTCCTCCTCCGCATCA 61.331 60.000 0.00 0.00 0.00 3.07
2940 5880 1.443828 GGTCTTCCTCCTCCGCATC 59.556 63.158 0.00 0.00 0.00 3.91
2941 5881 2.066999 GGGTCTTCCTCCTCCGCAT 61.067 63.158 0.00 0.00 0.00 4.73
2942 5882 2.683933 GGGTCTTCCTCCTCCGCA 60.684 66.667 0.00 0.00 0.00 5.69
2943 5883 1.838073 TTTGGGTCTTCCTCCTCCGC 61.838 60.000 0.00 0.00 36.20 5.54
2944 5884 0.912486 ATTTGGGTCTTCCTCCTCCG 59.088 55.000 0.00 0.00 36.20 4.63
2945 5885 1.916181 TCATTTGGGTCTTCCTCCTCC 59.084 52.381 0.00 0.00 36.20 4.30
2946 5886 3.721087 TTCATTTGGGTCTTCCTCCTC 57.279 47.619 0.00 0.00 36.20 3.71
2947 5887 5.340360 CCTTATTCATTTGGGTCTTCCTCCT 60.340 44.000 0.00 0.00 36.20 3.69
2948 5888 4.889995 CCTTATTCATTTGGGTCTTCCTCC 59.110 45.833 0.00 0.00 36.20 4.30
2949 5889 4.339530 GCCTTATTCATTTGGGTCTTCCTC 59.660 45.833 0.00 0.00 36.20 3.71
2950 5890 4.281657 GCCTTATTCATTTGGGTCTTCCT 58.718 43.478 0.00 0.00 36.20 3.36
2951 5891 3.066760 CGCCTTATTCATTTGGGTCTTCC 59.933 47.826 0.00 0.00 0.00 3.46
2952 5892 3.945285 TCGCCTTATTCATTTGGGTCTTC 59.055 43.478 0.00 0.00 0.00 2.87
2953 5893 3.694566 GTCGCCTTATTCATTTGGGTCTT 59.305 43.478 0.00 0.00 0.00 3.01
2954 5894 3.279434 GTCGCCTTATTCATTTGGGTCT 58.721 45.455 0.00 0.00 0.00 3.85
2955 5895 2.031683 CGTCGCCTTATTCATTTGGGTC 59.968 50.000 0.00 0.00 0.00 4.46
2956 5896 2.014128 CGTCGCCTTATTCATTTGGGT 58.986 47.619 0.00 0.00 0.00 4.51
2957 5897 2.285083 TCGTCGCCTTATTCATTTGGG 58.715 47.619 0.00 0.00 0.00 4.12
2958 5898 2.287915 CCTCGTCGCCTTATTCATTTGG 59.712 50.000 0.00 0.00 0.00 3.28
2959 5899 3.194861 TCCTCGTCGCCTTATTCATTTG 58.805 45.455 0.00 0.00 0.00 2.32
2960 5900 3.458189 CTCCTCGTCGCCTTATTCATTT 58.542 45.455 0.00 0.00 0.00 2.32
2961 5901 2.803492 GCTCCTCGTCGCCTTATTCATT 60.803 50.000 0.00 0.00 0.00 2.57
2962 5902 1.269831 GCTCCTCGTCGCCTTATTCAT 60.270 52.381 0.00 0.00 0.00 2.57
2963 5903 0.102481 GCTCCTCGTCGCCTTATTCA 59.898 55.000 0.00 0.00 0.00 2.57
2964 5904 0.102481 TGCTCCTCGTCGCCTTATTC 59.898 55.000 0.00 0.00 0.00 1.75
2965 5905 0.179108 GTGCTCCTCGTCGCCTTATT 60.179 55.000 0.00 0.00 0.00 1.40
2966 5906 1.038130 AGTGCTCCTCGTCGCCTTAT 61.038 55.000 0.00 0.00 0.00 1.73
2967 5907 0.393402 TAGTGCTCCTCGTCGCCTTA 60.393 55.000 0.00 0.00 0.00 2.69
2968 5908 1.658686 CTAGTGCTCCTCGTCGCCTT 61.659 60.000 0.00 0.00 0.00 4.35
2969 5909 2.045242 TAGTGCTCCTCGTCGCCT 60.045 61.111 0.00 0.00 0.00 5.52
2970 5910 2.409651 CTAGTGCTCCTCGTCGCC 59.590 66.667 0.00 0.00 0.00 5.54
2971 5911 1.654954 TTCCTAGTGCTCCTCGTCGC 61.655 60.000 0.00 0.00 0.00 5.19
2972 5912 0.378962 CTTCCTAGTGCTCCTCGTCG 59.621 60.000 0.00 0.00 0.00 5.12
2973 5913 0.101579 GCTTCCTAGTGCTCCTCGTC 59.898 60.000 0.00 0.00 0.00 4.20
2974 5914 1.324005 GGCTTCCTAGTGCTCCTCGT 61.324 60.000 0.00 0.00 0.00 4.18
2975 5915 1.040339 AGGCTTCCTAGTGCTCCTCG 61.040 60.000 0.00 0.00 28.47 4.63
2976 5916 1.138069 GAAGGCTTCCTAGTGCTCCTC 59.862 57.143 16.50 0.00 31.13 3.71
2977 5917 1.199615 GAAGGCTTCCTAGTGCTCCT 58.800 55.000 16.50 0.00 31.13 3.69
2978 5918 3.770625 GAAGGCTTCCTAGTGCTCC 57.229 57.895 16.50 0.00 31.13 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.