Multiple sequence alignment - TraesCS7A01G409200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G409200 chr7A 100.000 5980 0 0 1 5980 596034838 596040817 0.000000e+00 11044.0
1 TraesCS7A01G409200 chr7A 93.617 94 6 0 355 448 426576225 426576318 2.250000e-29 141.0
2 TraesCS7A01G409200 chr7D 95.871 3391 103 23 1 3389 519962157 519965512 0.000000e+00 5452.0
3 TraesCS7A01G409200 chr7D 95.028 1247 44 2 4207 5439 519966559 519967801 0.000000e+00 1943.0
4 TraesCS7A01G409200 chr7D 95.581 1041 15 2 3174 4214 519965512 519966521 0.000000e+00 1639.0
5 TraesCS7A01G409200 chr7D 87.121 132 13 4 5433 5564 519967822 519967949 4.830000e-31 147.0
6 TraesCS7A01G409200 chr7D 92.391 92 7 0 357 448 378322128 378322219 1.350000e-26 132.0
7 TraesCS7A01G409200 chr7B 97.524 2868 62 3 527 3389 553178298 553181161 0.000000e+00 4894.0
8 TraesCS7A01G409200 chr7B 94.341 1237 56 8 4207 5438 553182244 553183471 0.000000e+00 1884.0
9 TraesCS7A01G409200 chr7B 95.270 1057 23 6 3174 4214 553181161 553182206 0.000000e+00 1650.0
10 TraesCS7A01G409200 chr7B 90.744 551 28 8 1 529 553177710 553178259 0.000000e+00 713.0
11 TraesCS7A01G409200 chr7B 88.213 263 22 7 5635 5896 553184146 553184400 7.530000e-79 305.0
12 TraesCS7A01G409200 chr7B 91.667 132 8 3 5433 5564 553183493 553183621 4.760000e-41 180.0
13 TraesCS7A01G409200 chr7B 93.478 92 6 0 357 448 373075413 373075504 2.910000e-28 137.0
14 TraesCS7A01G409200 chr7B 91.765 85 7 0 5896 5980 553324480 553324564 1.050000e-22 119.0
15 TraesCS7A01G409200 chr3A 95.506 89 4 0 357 445 83748184 83748096 6.250000e-30 143.0
16 TraesCS7A01G409200 chr3A 93.258 89 6 0 357 445 34532612 34532524 1.350000e-26 132.0
17 TraesCS7A01G409200 chr3A 92.000 50 4 0 3571 3620 333322132 333322083 2.990000e-08 71.3
18 TraesCS7A01G409200 chr3B 94.382 89 5 0 357 445 42630981 42630893 2.910000e-28 137.0
19 TraesCS7A01G409200 chr4A 93.333 90 6 0 357 446 71997719 71997808 3.760000e-27 134.0
20 TraesCS7A01G409200 chr5A 92.135 89 7 0 357 445 622051065 622051153 6.290000e-25 126.0
21 TraesCS7A01G409200 chr5A 93.878 49 3 0 3568 3616 539960798 539960846 2.310000e-09 75.0
22 TraesCS7A01G409200 chr2D 95.918 49 0 2 3571 3617 282927672 282927624 1.790000e-10 78.7
23 TraesCS7A01G409200 chr2A 94.231 52 1 2 3568 3617 341928076 341928127 1.790000e-10 78.7
24 TraesCS7A01G409200 chr1D 95.745 47 2 0 453 499 223528559 223528513 6.430000e-10 76.8
25 TraesCS7A01G409200 chrUn 95.745 47 0 2 3573 3617 277316190 277316236 2.310000e-09 75.0
26 TraesCS7A01G409200 chr2B 95.745 47 0 2 3573 3617 314776924 314776878 2.310000e-09 75.0
27 TraesCS7A01G409200 chr1A 97.674 43 1 0 3568 3610 36563525 36563567 2.310000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G409200 chr7A 596034838 596040817 5979 False 11044.000000 11044 100.000000 1 5980 1 chr7A.!!$F2 5979
1 TraesCS7A01G409200 chr7D 519962157 519967949 5792 False 2295.250000 5452 93.400250 1 5564 4 chr7D.!!$F2 5563
2 TraesCS7A01G409200 chr7B 553177710 553184400 6690 False 1604.333333 4894 92.959833 1 5896 6 chr7B.!!$F3 5895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 516 0.325671 AGCTTCTAGCACTGGGCCTA 60.326 55.000 4.53 0.0 45.56 3.93 F
846 913 2.791560 CCGTGCATAGATTCTTGACTCG 59.208 50.000 0.00 0.0 0.00 4.18 F
1833 1900 1.595311 ATGGATGGCTGGGTTCTACA 58.405 50.000 0.00 0.0 0.00 2.74 F
2686 2753 3.507233 TCTGTTTGCAATGATCCAAGACC 59.493 43.478 0.00 0.0 0.00 3.85 F
3618 3921 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1501 1.610624 GCCGTTTCATCACCTTCCTCA 60.611 52.381 0.00 0.0 0.00 3.86 R
2573 2640 2.930040 CTGGTTGCATAAGTGGAGTACG 59.070 50.000 0.00 0.0 0.00 3.67 R
3616 3919 0.106769 TGTGCTTGAGAAGGGCAACA 60.107 50.000 0.00 0.0 37.73 3.33 R
4259 4652 0.114168 AGACTGAGTCCTGGAGCACT 59.886 55.000 9.33 0.0 32.18 4.40 R
5613 6048 0.105913 GGGAGGAGAGAGGGTCGATT 60.106 60.000 0.00 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.581024 TCTTTCCAATGCTTGCACATC 57.419 42.857 0.00 0.00 0.00 3.06
167 168 7.254286 GCCAGTTTTTACACGTTGAATGATTTT 60.254 33.333 0.00 0.00 0.00 1.82
297 298 4.986054 TGGCTTAAGACAAGGAAGGTTA 57.014 40.909 9.08 0.00 0.00 2.85
312 313 8.834465 CAAGGAAGGTTATGTCAAGAATATCTG 58.166 37.037 0.00 0.00 0.00 2.90
387 390 0.603569 CGCAGTGGTGAAGTACTCCT 59.396 55.000 0.00 0.00 33.75 3.69
420 423 2.511600 GTCCTGGGTTCGATGCGG 60.512 66.667 0.00 0.00 0.00 5.69
435 438 3.494336 CGGCCTCTCTGCTTTGCG 61.494 66.667 0.00 0.00 0.00 4.85
467 493 4.351054 CCAGACCCCACCTGGTGC 62.351 72.222 21.47 7.66 44.66 5.01
490 516 0.325671 AGCTTCTAGCACTGGGCCTA 60.326 55.000 4.53 0.00 45.56 3.93
503 529 2.887152 CTGGGCCTATCCTTATTGTTGC 59.113 50.000 4.53 0.00 34.39 4.17
666 733 3.566322 GCAGTAAACATGTGTTGGTGGTA 59.434 43.478 0.00 0.00 38.44 3.25
706 773 7.010460 GCATTCAACTATCCTACCAATTTTTGC 59.990 37.037 0.00 0.00 0.00 3.68
743 810 4.592778 ACATACTTTGTTTTGGCCCTTCAT 59.407 37.500 0.00 0.00 33.74 2.57
747 814 5.550290 ACTTTGTTTTGGCCCTTCATTATG 58.450 37.500 0.00 0.00 0.00 1.90
846 913 2.791560 CCGTGCATAGATTCTTGACTCG 59.208 50.000 0.00 0.00 0.00 4.18
1170 1237 4.265073 GACCTAATCTTGCCAGTGATTGT 58.735 43.478 0.00 0.00 35.01 2.71
1179 1246 5.711506 TCTTGCCAGTGATTGTGTCAATTAT 59.288 36.000 0.00 0.00 38.90 1.28
1281 1348 5.952347 GTCCCTGATTGAAGGATTTAAAGGT 59.048 40.000 0.00 0.00 40.02 3.50
1578 1645 3.003230 CCTCCGGGGCCACATAAA 58.997 61.111 5.46 0.00 0.00 1.40
1833 1900 1.595311 ATGGATGGCTGGGTTCTACA 58.405 50.000 0.00 0.00 0.00 2.74
2359 2426 8.190784 AGTCTGTCTTTTTGGTGAACTTATTTG 58.809 33.333 0.00 0.00 0.00 2.32
2367 2434 8.810652 TTTTGGTGAACTTATTTGCAGATTAC 57.189 30.769 0.00 0.00 0.00 1.89
2376 2443 8.863872 ACTTATTTGCAGATTACTTACTTGGT 57.136 30.769 0.00 0.00 0.00 3.67
2492 2559 9.739276 AGATTGATTACAGTTGGACAATAGAAA 57.261 29.630 0.00 0.00 0.00 2.52
2573 2640 6.981559 TGTAATGTTTTTAGCTTTGGTTCACC 59.018 34.615 0.00 0.00 0.00 4.02
2686 2753 3.507233 TCTGTTTGCAATGATCCAAGACC 59.493 43.478 0.00 0.00 0.00 3.85
3016 3088 3.557595 GCATCCACACACTAATGTAGCTC 59.442 47.826 0.00 0.00 36.72 4.09
3038 3110 6.299805 TCTTGGCTCATGTAGTCATACTTT 57.700 37.500 0.00 0.00 40.24 2.66
3054 3126 3.915437 ACTTTTGCCTGTAAATGGTCG 57.085 42.857 0.00 0.00 0.00 4.79
3318 3605 8.705594 CAACTCCTGTTTCTAGGAATCCTAATA 58.294 37.037 10.62 0.00 45.82 0.98
3325 3612 9.507329 TGTTTCTAGGAATCCTAATATGCAATC 57.493 33.333 10.62 0.00 35.49 2.67
3615 3918 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
3616 3919 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3617 3920 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
3618 3921 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4169 4472 5.453339 GCTAGAATGGCACCTACACTTCATA 60.453 44.000 0.00 0.00 44.73 2.15
4259 4652 1.340600 CCTCAAAAGGCCGTGGGATTA 60.341 52.381 5.64 0.00 35.37 1.75
4419 4812 3.676512 TATTGCGCCACAAAGCCAAGC 62.677 52.381 4.18 0.00 42.86 4.01
4452 4845 1.549203 AAGTGCCATGGTGGTGATTC 58.451 50.000 14.67 0.00 40.46 2.52
4453 4846 0.405198 AGTGCCATGGTGGTGATTCA 59.595 50.000 14.67 0.00 40.46 2.57
4455 4848 1.826720 GTGCCATGGTGGTGATTCAAT 59.173 47.619 14.67 0.00 40.46 2.57
4775 5170 1.136984 CCTGCACCGAGTACGTCTC 59.863 63.158 0.00 0.00 39.62 3.36
4776 5171 1.136984 CTGCACCGAGTACGTCTCC 59.863 63.158 0.00 0.00 39.84 3.71
4777 5172 1.303074 TGCACCGAGTACGTCTCCT 60.303 57.895 0.00 0.00 39.84 3.69
4778 5173 0.892358 TGCACCGAGTACGTCTCCTT 60.892 55.000 0.00 0.00 39.84 3.36
4780 5175 1.336609 GCACCGAGTACGTCTCCTTTT 60.337 52.381 0.00 0.00 39.84 2.27
4784 5179 3.057245 ACCGAGTACGTCTCCTTTTAACC 60.057 47.826 0.00 0.00 39.84 2.85
4786 5181 3.505836 GAGTACGTCTCCTTTTAACCCG 58.494 50.000 0.00 0.00 37.22 5.28
4788 5183 0.393820 ACGTCTCCTTTTAACCCGCA 59.606 50.000 0.00 0.00 0.00 5.69
4791 5200 1.196127 GTCTCCTTTTAACCCGCAACG 59.804 52.381 0.00 0.00 0.00 4.10
4794 5203 0.110554 CCTTTTAACCCGCAACGTCG 60.111 55.000 0.00 0.00 0.00 5.12
4825 5234 4.371624 TCATTCCTGTTTCCACTGACAT 57.628 40.909 0.00 0.00 0.00 3.06
4875 5284 2.358195 GGGGAGGCAGTACAATTTGGAT 60.358 50.000 0.78 0.00 0.00 3.41
4892 5301 2.175284 TGGATCCTGCAATAAGCCATCA 59.825 45.455 14.23 0.00 44.83 3.07
4996 5405 0.397254 TAGTAGCAGAGGGGACAGCC 60.397 60.000 0.00 0.00 0.00 4.85
4997 5406 1.990060 GTAGCAGAGGGGACAGCCA 60.990 63.158 0.00 0.00 35.15 4.75
4998 5407 1.687146 TAGCAGAGGGGACAGCCAG 60.687 63.158 0.00 0.00 35.15 4.85
4999 5408 4.792804 GCAGAGGGGACAGCCAGC 62.793 72.222 0.00 0.00 35.15 4.85
5038 5447 1.906333 CCCCTTTGGTCCCCGTTTG 60.906 63.158 0.00 0.00 0.00 2.93
5181 5590 3.320826 GGATGTGCTGTTAGTTTGGGTTT 59.679 43.478 0.00 0.00 0.00 3.27
5267 5676 3.679389 ACTTGGCAACTGTTATCTCCTG 58.321 45.455 0.00 0.00 37.61 3.86
5308 5717 4.157105 GCCGTGGTGGTGTTATTTAATCTT 59.843 41.667 0.00 0.00 41.21 2.40
5335 5744 3.049708 ACTCCTAGTTTACCCGTTTGC 57.950 47.619 0.00 0.00 0.00 3.68
5381 5790 2.742372 CTGGCGTTCCAACCTCGG 60.742 66.667 0.00 0.00 42.91 4.63
5446 5881 0.884704 GGCTTCTTCCTTGCACGACA 60.885 55.000 0.00 0.00 0.00 4.35
5536 5971 8.738645 AGTTCATCCTTCACTAAATTATGGTC 57.261 34.615 0.00 0.00 0.00 4.02
5540 5975 4.873827 TCCTTCACTAAATTATGGTCGCAC 59.126 41.667 0.00 0.00 0.00 5.34
5557 5992 1.403323 GCACTCCTGCTCTTTTATGCC 59.597 52.381 0.00 0.00 40.63 4.40
5564 5999 3.428589 CCTGCTCTTTTATGCCTTGCTTC 60.429 47.826 0.00 0.00 0.00 3.86
5565 6000 3.424703 TGCTCTTTTATGCCTTGCTTCT 58.575 40.909 0.00 0.00 0.00 2.85
5566 6001 3.441572 TGCTCTTTTATGCCTTGCTTCTC 59.558 43.478 0.00 0.00 0.00 2.87
5568 6003 4.438472 GCTCTTTTATGCCTTGCTTCTCAG 60.438 45.833 0.00 0.00 0.00 3.35
5569 6004 4.012374 TCTTTTATGCCTTGCTTCTCAGG 58.988 43.478 0.00 0.00 0.00 3.86
5570 6005 3.439857 TTTATGCCTTGCTTCTCAGGT 57.560 42.857 0.00 0.00 0.00 4.00
5571 6006 4.568072 TTTATGCCTTGCTTCTCAGGTA 57.432 40.909 0.00 0.00 0.00 3.08
5572 6007 2.409948 ATGCCTTGCTTCTCAGGTAC 57.590 50.000 0.00 0.00 0.00 3.34
5586 6021 1.828081 GGTACTGGACCGGATTCCC 59.172 63.158 9.46 4.04 38.87 3.97
5587 6022 0.979187 GGTACTGGACCGGATTCCCA 60.979 60.000 9.46 8.97 38.87 4.37
5588 6023 1.129058 GTACTGGACCGGATTCCCAT 58.871 55.000 9.46 0.00 34.33 4.00
5589 6024 1.070289 GTACTGGACCGGATTCCCATC 59.930 57.143 9.46 0.00 34.33 3.51
5590 6025 1.069765 CTGGACCGGATTCCCATCG 59.930 63.158 9.46 0.00 34.33 3.84
5591 6026 2.280865 GGACCGGATTCCCATCGC 60.281 66.667 9.46 0.00 0.00 4.58
5592 6027 2.661866 GACCGGATTCCCATCGCG 60.662 66.667 9.46 0.00 0.00 5.87
5593 6028 4.910585 ACCGGATTCCCATCGCGC 62.911 66.667 9.46 0.00 0.00 6.86
5598 6033 3.757248 GATTCCCATCGCGCCCAGT 62.757 63.158 0.00 0.00 0.00 4.00
5601 6036 3.536917 CCCATCGCGCCCAGTCTA 61.537 66.667 0.00 0.00 0.00 2.59
5603 6038 1.883084 CCATCGCGCCCAGTCTAAC 60.883 63.158 0.00 0.00 0.00 2.34
5604 6039 1.883084 CATCGCGCCCAGTCTAACC 60.883 63.158 0.00 0.00 0.00 2.85
5605 6040 3.426117 ATCGCGCCCAGTCTAACCG 62.426 63.158 0.00 0.00 0.00 4.44
5609 6044 4.832608 GCCCAGTCTAACCGCCGG 62.833 72.222 0.00 0.00 0.00 6.13
5610 6045 4.832608 CCCAGTCTAACCGCCGGC 62.833 72.222 19.07 19.07 0.00 6.13
5624 6059 2.494918 CGGCGAAATCGACCCTCT 59.505 61.111 0.00 0.00 46.52 3.69
5625 6060 1.589196 CGGCGAAATCGACCCTCTC 60.589 63.158 0.00 0.00 46.52 3.20
5627 6062 0.249114 GGCGAAATCGACCCTCTCTC 60.249 60.000 7.06 0.00 42.67 3.20
5628 6063 0.249114 GCGAAATCGACCCTCTCTCC 60.249 60.000 7.06 0.00 43.02 3.71
5629 6064 1.394618 CGAAATCGACCCTCTCTCCT 58.605 55.000 0.00 0.00 43.02 3.69
5630 6065 1.335496 CGAAATCGACCCTCTCTCCTC 59.665 57.143 0.00 0.00 43.02 3.71
5631 6066 1.684450 GAAATCGACCCTCTCTCCTCC 59.316 57.143 0.00 0.00 0.00 4.30
5636 6525 1.864559 ACCCTCTCTCCTCCCTGGT 60.865 63.158 0.00 0.00 37.07 4.00
5639 6528 0.041833 CCTCTCTCCTCCCTGGTTCA 59.958 60.000 0.00 0.00 37.07 3.18
5658 6547 2.356793 GTGCGTGCTGTGAGCTCT 60.357 61.111 16.19 0.00 42.97 4.09
5662 6551 2.091112 CGTGCTGTGAGCTCTTCCG 61.091 63.158 16.19 5.97 42.97 4.30
5672 6561 0.393537 AGCTCTTCCGCCATTTCTGG 60.394 55.000 0.00 0.00 46.17 3.86
5673 6562 0.678048 GCTCTTCCGCCATTTCTGGT 60.678 55.000 0.00 0.00 45.10 4.00
5691 6580 2.282745 GGTGCCTGCTCTGCCTTT 60.283 61.111 0.00 0.00 0.00 3.11
5710 6600 4.018415 CCTTTCCTTCCTACCATTTCCTCA 60.018 45.833 0.00 0.00 0.00 3.86
5733 6623 2.436417 CAACCATCTAATATGGCCGGG 58.564 52.381 2.18 0.00 42.82 5.73
5734 6624 0.991920 ACCATCTAATATGGCCGGGG 59.008 55.000 2.18 0.00 42.82 5.73
5826 6716 1.723273 CGTACGTGGCGAGGTGATA 59.277 57.895 7.22 0.00 0.00 2.15
5876 6766 0.460284 CGCATTCCTCGTAAGGCTGT 60.460 55.000 0.00 0.00 43.02 4.40
5883 6773 3.387947 CGTAAGGCTGTCCCGGGT 61.388 66.667 22.86 0.50 39.21 5.28
5898 6788 4.097361 GGTGGAGGACCCCGAAGC 62.097 72.222 0.00 0.00 39.10 3.86
5899 6789 3.319198 GTGGAGGACCCCGAAGCA 61.319 66.667 0.00 0.00 34.81 3.91
5900 6790 3.003173 TGGAGGACCCCGAAGCAG 61.003 66.667 0.00 0.00 34.81 4.24
5901 6791 4.475135 GGAGGACCCCGAAGCAGC 62.475 72.222 0.00 0.00 0.00 5.25
5902 6792 3.394836 GAGGACCCCGAAGCAGCT 61.395 66.667 0.00 0.00 0.00 4.24
5903 6793 3.672295 GAGGACCCCGAAGCAGCTG 62.672 68.421 10.11 10.11 0.00 4.24
5904 6794 3.706373 GGACCCCGAAGCAGCTGA 61.706 66.667 20.43 0.00 0.00 4.26
5905 6795 2.347490 GACCCCGAAGCAGCTGAA 59.653 61.111 20.43 0.00 0.00 3.02
5906 6796 1.743252 GACCCCGAAGCAGCTGAAG 60.743 63.158 20.43 4.49 0.00 3.02
5907 6797 2.437359 CCCCGAAGCAGCTGAAGG 60.437 66.667 20.43 13.60 0.00 3.46
5908 6798 3.130160 CCCGAAGCAGCTGAAGGC 61.130 66.667 20.43 0.63 42.19 4.35
5918 6808 2.436646 CTGAAGGCGGCGTCCATT 60.437 61.111 21.29 4.43 0.00 3.16
5919 6809 2.745884 TGAAGGCGGCGTCCATTG 60.746 61.111 21.29 0.00 0.00 2.82
5920 6810 2.746277 GAAGGCGGCGTCCATTGT 60.746 61.111 19.61 4.83 0.00 2.71
5921 6811 3.039202 GAAGGCGGCGTCCATTGTG 62.039 63.158 19.61 0.00 0.00 3.33
5925 6815 4.715523 CGGCGTCCATTGTGGGGT 62.716 66.667 0.00 0.00 38.32 4.95
5926 6816 2.282887 GGCGTCCATTGTGGGGTT 60.283 61.111 0.00 0.00 38.32 4.11
5927 6817 1.906333 GGCGTCCATTGTGGGGTTT 60.906 57.895 0.00 0.00 38.32 3.27
5928 6818 1.288752 GCGTCCATTGTGGGGTTTG 59.711 57.895 0.00 0.00 38.32 2.93
5929 6819 1.963679 CGTCCATTGTGGGGTTTGG 59.036 57.895 0.00 0.00 38.32 3.28
5930 6820 0.825840 CGTCCATTGTGGGGTTTGGT 60.826 55.000 0.00 0.00 38.32 3.67
5931 6821 0.678950 GTCCATTGTGGGGTTTGGTG 59.321 55.000 0.00 0.00 38.32 4.17
5932 6822 0.470833 TCCATTGTGGGGTTTGGTGG 60.471 55.000 0.00 0.00 38.32 4.61
5933 6823 1.479368 CCATTGTGGGGTTTGGTGGG 61.479 60.000 0.00 0.00 32.67 4.61
5934 6824 0.470833 CATTGTGGGGTTTGGTGGGA 60.471 55.000 0.00 0.00 0.00 4.37
5935 6825 0.491371 ATTGTGGGGTTTGGTGGGAT 59.509 50.000 0.00 0.00 0.00 3.85
5936 6826 0.470833 TTGTGGGGTTTGGTGGGATG 60.471 55.000 0.00 0.00 0.00 3.51
5937 6827 1.609210 GTGGGGTTTGGTGGGATGG 60.609 63.158 0.00 0.00 0.00 3.51
5938 6828 2.038813 GGGGTTTGGTGGGATGGG 59.961 66.667 0.00 0.00 0.00 4.00
5939 6829 2.683572 GGGTTTGGTGGGATGGGC 60.684 66.667 0.00 0.00 0.00 5.36
5940 6830 2.119391 GGTTTGGTGGGATGGGCA 59.881 61.111 0.00 0.00 0.00 5.36
5941 6831 1.535202 GGTTTGGTGGGATGGGCAA 60.535 57.895 0.00 0.00 0.00 4.52
5942 6832 1.543944 GGTTTGGTGGGATGGGCAAG 61.544 60.000 0.00 0.00 0.00 4.01
5943 6833 0.541764 GTTTGGTGGGATGGGCAAGA 60.542 55.000 0.00 0.00 0.00 3.02
5944 6834 0.541764 TTTGGTGGGATGGGCAAGAC 60.542 55.000 0.00 0.00 0.00 3.01
5945 6835 2.438434 GGTGGGATGGGCAAGACG 60.438 66.667 0.00 0.00 0.00 4.18
5946 6836 2.668632 GTGGGATGGGCAAGACGA 59.331 61.111 0.00 0.00 0.00 4.20
5947 6837 1.745489 GTGGGATGGGCAAGACGAC 60.745 63.158 0.00 0.00 0.00 4.34
5948 6838 1.918293 TGGGATGGGCAAGACGACT 60.918 57.895 0.00 0.00 0.00 4.18
5949 6839 1.153349 GGGATGGGCAAGACGACTC 60.153 63.158 0.00 0.00 0.00 3.36
5950 6840 1.153349 GGATGGGCAAGACGACTCC 60.153 63.158 0.00 0.00 0.00 3.85
5951 6841 1.617947 GGATGGGCAAGACGACTCCT 61.618 60.000 0.00 0.00 0.00 3.69
5952 6842 0.460987 GATGGGCAAGACGACTCCTG 60.461 60.000 0.00 0.00 0.00 3.86
5953 6843 2.435059 GGGCAAGACGACTCCTGC 60.435 66.667 3.41 3.41 31.40 4.85
5954 6844 2.435059 GGCAAGACGACTCCTGCC 60.435 66.667 13.45 13.45 41.04 4.85
5955 6845 2.343758 GCAAGACGACTCCTGCCA 59.656 61.111 0.83 0.00 0.00 4.92
5956 6846 1.301716 GCAAGACGACTCCTGCCAA 60.302 57.895 0.83 0.00 0.00 4.52
5957 6847 1.569479 GCAAGACGACTCCTGCCAAC 61.569 60.000 0.83 0.00 0.00 3.77
5958 6848 0.951040 CAAGACGACTCCTGCCAACC 60.951 60.000 0.00 0.00 0.00 3.77
5959 6849 1.407656 AAGACGACTCCTGCCAACCA 61.408 55.000 0.00 0.00 0.00 3.67
5960 6850 1.070786 GACGACTCCTGCCAACCAA 59.929 57.895 0.00 0.00 0.00 3.67
5961 6851 0.534203 GACGACTCCTGCCAACCAAA 60.534 55.000 0.00 0.00 0.00 3.28
5962 6852 0.110486 ACGACTCCTGCCAACCAAAT 59.890 50.000 0.00 0.00 0.00 2.32
5963 6853 0.804989 CGACTCCTGCCAACCAAATC 59.195 55.000 0.00 0.00 0.00 2.17
5964 6854 1.611673 CGACTCCTGCCAACCAAATCT 60.612 52.381 0.00 0.00 0.00 2.40
5965 6855 2.354704 CGACTCCTGCCAACCAAATCTA 60.355 50.000 0.00 0.00 0.00 1.98
5966 6856 3.010420 GACTCCTGCCAACCAAATCTAC 58.990 50.000 0.00 0.00 0.00 2.59
5967 6857 2.290960 ACTCCTGCCAACCAAATCTACC 60.291 50.000 0.00 0.00 0.00 3.18
5968 6858 1.707989 TCCTGCCAACCAAATCTACCA 59.292 47.619 0.00 0.00 0.00 3.25
5969 6859 1.818674 CCTGCCAACCAAATCTACCAC 59.181 52.381 0.00 0.00 0.00 4.16
5970 6860 2.555227 CCTGCCAACCAAATCTACCACT 60.555 50.000 0.00 0.00 0.00 4.00
5971 6861 2.749621 CTGCCAACCAAATCTACCACTC 59.250 50.000 0.00 0.00 0.00 3.51
5972 6862 1.737793 GCCAACCAAATCTACCACTCG 59.262 52.381 0.00 0.00 0.00 4.18
5973 6863 2.874457 GCCAACCAAATCTACCACTCGT 60.874 50.000 0.00 0.00 0.00 4.18
5974 6864 3.408634 CCAACCAAATCTACCACTCGTT 58.591 45.455 0.00 0.00 0.00 3.85
5975 6865 3.818773 CCAACCAAATCTACCACTCGTTT 59.181 43.478 0.00 0.00 0.00 3.60
5976 6866 4.320202 CCAACCAAATCTACCACTCGTTTG 60.320 45.833 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.498777 TGGCATTGCAAAACAACATCATG 59.501 39.130 11.39 0.00 42.27 3.07
107 108 7.381766 TGATACTAAAGCTTGTCTACGTGTA 57.618 36.000 0.00 0.00 0.00 2.90
108 109 6.263516 TGATACTAAAGCTTGTCTACGTGT 57.736 37.500 0.00 0.00 0.00 4.49
167 168 0.934496 CGAGAAGCGGTTCACAACAA 59.066 50.000 27.46 0.00 34.82 2.83
284 285 8.738645 ATATTCTTGACATAACCTTCCTTGTC 57.261 34.615 0.00 0.00 39.11 3.18
467 493 1.142748 CCAGTGCTAGAAGCTCCCG 59.857 63.158 0.00 0.00 42.97 5.14
490 516 4.782019 TTTCTTGCGCAACAATAAGGAT 57.218 36.364 21.02 0.00 37.72 3.24
627 694 7.491372 TGTTTACTGCAACAGTATATAGAGTGC 59.509 37.037 8.19 0.00 44.85 4.40
657 724 5.066117 GCTTATTTCTAGCCTTACCACCAAC 59.934 44.000 0.00 0.00 32.45 3.77
666 733 8.986929 ATAGTTGAATGCTTATTTCTAGCCTT 57.013 30.769 0.00 0.00 37.85 4.35
706 773 9.581099 AAACAAAGTATGTTCTTTTACACCAAG 57.419 29.630 0.00 0.00 45.86 3.61
747 814 8.582433 TCCGAAAAAGGAAAATCAACAAATAC 57.418 30.769 0.00 0.00 37.36 1.89
834 901 6.888430 ACAAAATACACACGAGTCAAGAATC 58.112 36.000 0.00 0.00 0.00 2.52
846 913 8.028540 TGATGTCAGTCATACAAAATACACAC 57.971 34.615 0.00 0.00 36.83 3.82
1170 1237 7.174946 GGAACTCCACTTTTCAGATAATTGACA 59.825 37.037 0.00 0.00 35.64 3.58
1179 1246 2.487265 GCTGGGAACTCCACTTTTCAGA 60.487 50.000 0.00 0.00 41.46 3.27
1281 1348 1.885887 GCCACAACACTAGATTTGCCA 59.114 47.619 0.00 0.00 0.00 4.92
1434 1501 1.610624 GCCGTTTCATCACCTTCCTCA 60.611 52.381 0.00 0.00 0.00 3.86
1578 1645 4.680708 CGTAATATGTCTGCAGTGGAAGGT 60.681 45.833 14.67 0.00 0.00 3.50
2359 2426 6.349363 CCCTTCAAACCAAGTAAGTAATCTGC 60.349 42.308 0.00 0.00 0.00 4.26
2367 2434 6.266786 ACCATAAACCCTTCAAACCAAGTAAG 59.733 38.462 0.00 0.00 0.00 2.34
2474 2541 7.990886 AGAACAAGTTTCTATTGTCCAACTGTA 59.009 33.333 0.00 0.00 39.91 2.74
2492 2559 4.101741 AGCTGGACTTCTACAAGAACAAGT 59.898 41.667 0.00 0.00 33.34 3.16
2573 2640 2.930040 CTGGTTGCATAAGTGGAGTACG 59.070 50.000 0.00 0.00 0.00 3.67
2686 2753 8.933807 CAGTTCCTTTGCTACAGATGATATATG 58.066 37.037 0.00 0.00 0.00 1.78
2988 3060 2.455674 TAGTGTGTGGATGCACTGAC 57.544 50.000 18.75 13.86 44.59 3.51
3016 3088 6.676456 GCAAAAGTATGACTACATGAGCCAAG 60.676 42.308 0.00 0.00 37.87 3.61
3038 3110 0.878416 GTGCGACCATTTACAGGCAA 59.122 50.000 0.00 0.00 31.53 4.52
3054 3126 9.167311 CTATCCTCCCTATATAATTTTGTGTGC 57.833 37.037 0.00 0.00 0.00 4.57
3318 3605 2.494471 CACCATCACCACTTGATTGCAT 59.506 45.455 0.00 0.00 42.87 3.96
3325 3612 0.594602 CTGTGCACCATCACCACTTG 59.405 55.000 15.69 0.00 36.17 3.16
3615 3918 1.032014 GTGCTTGAGAAGGGCAACAA 58.968 50.000 0.00 0.00 37.73 2.83
3616 3919 0.106769 TGTGCTTGAGAAGGGCAACA 60.107 50.000 0.00 0.00 37.73 3.33
3617 3920 0.312102 GTGTGCTTGAGAAGGGCAAC 59.688 55.000 0.00 0.00 37.73 4.17
3618 3921 0.823356 GGTGTGCTTGAGAAGGGCAA 60.823 55.000 0.00 0.00 37.73 4.52
3662 3965 9.404848 AGGAAGGTAATTAACTAAATAGCAACC 57.595 33.333 2.78 0.00 0.00 3.77
3684 3987 4.141344 ACACAAACCTTACTAGCCAAGGAA 60.141 41.667 23.90 0.00 44.59 3.36
4259 4652 0.114168 AGACTGAGTCCTGGAGCACT 59.886 55.000 9.33 0.00 32.18 4.40
4419 4812 6.127366 ACCATGGCACTTAGTTGGATAAATTG 60.127 38.462 13.04 0.00 0.00 2.32
4452 4845 2.159599 GGAGCTGCGACAGAAGAAATTG 60.160 50.000 10.46 0.00 32.44 2.32
4453 4846 2.079925 GGAGCTGCGACAGAAGAAATT 58.920 47.619 10.46 0.00 32.44 1.82
4455 4848 0.392706 TGGAGCTGCGACAGAAGAAA 59.607 50.000 10.46 0.00 32.44 2.52
4673 5068 0.967380 GTTGTTGGAGCCCCATGGAG 60.967 60.000 15.22 0.00 43.12 3.86
4775 5170 0.110554 CGACGTTGCGGGTTAAAAGG 60.111 55.000 0.00 0.00 0.00 3.11
4776 5171 0.582960 ACGACGTTGCGGGTTAAAAG 59.417 50.000 1.65 0.00 35.12 2.27
4777 5172 1.791785 CTACGACGTTGCGGGTTAAAA 59.208 47.619 5.50 0.00 35.12 1.52
4778 5173 1.417372 CTACGACGTTGCGGGTTAAA 58.583 50.000 5.50 0.00 35.12 1.52
4780 5175 1.444212 GCTACGACGTTGCGGGTTA 60.444 57.895 17.99 0.00 35.12 2.85
4784 5179 3.475774 GTGGCTACGACGTTGCGG 61.476 66.667 24.13 6.90 35.33 5.69
4786 5181 1.693083 GATGGTGGCTACGACGTTGC 61.693 60.000 23.33 23.33 33.89 4.17
4788 5183 0.535335 ATGATGGTGGCTACGACGTT 59.465 50.000 5.50 0.00 0.00 3.99
4791 5200 1.139058 AGGAATGATGGTGGCTACGAC 59.861 52.381 0.00 0.00 0.00 4.34
4794 5203 2.717639 ACAGGAATGATGGTGGCTAC 57.282 50.000 0.00 0.00 0.00 3.58
4825 5234 3.071479 GCAATTGGTAAAGGAGTGTCGA 58.929 45.455 7.72 0.00 0.00 4.20
4862 5271 6.183360 GCTTATTGCAGGATCCAAATTGTACT 60.183 38.462 15.82 0.00 42.31 2.73
4875 5284 1.683943 GCTGATGGCTTATTGCAGGA 58.316 50.000 0.00 0.00 45.15 3.86
4996 5405 3.869272 GCGGTGCAATCTCGGCTG 61.869 66.667 0.00 0.00 0.00 4.85
4999 5408 4.812476 TCCGCGGTGCAATCTCGG 62.812 66.667 27.15 11.95 41.30 4.63
5038 5447 3.201290 CATGTACAGCAACAGAGATCCC 58.799 50.000 0.33 0.00 31.70 3.85
5181 5590 6.946583 GTGACTGGTATGTATCCCTACAGATA 59.053 42.308 0.00 0.00 41.05 1.98
5267 5676 3.871775 CCACAGGCACATGAAACAC 57.128 52.632 0.00 0.00 0.00 3.32
5308 5717 3.511146 CGGGTAAACTAGGAGTACCACAA 59.489 47.826 16.28 0.00 39.29 3.33
5335 5744 0.322546 GGCCTAGGTTCAACACTGGG 60.323 60.000 11.31 4.61 38.28 4.45
5381 5790 1.226945 GGCGTGCCAATTACCATGC 60.227 57.895 5.89 11.35 41.91 4.06
5446 5881 2.037641 GCCATTGCCAACTTCTTTCCTT 59.962 45.455 0.00 0.00 0.00 3.36
5489 5924 8.523915 AACTCAGATGGCATAAACATGAATTA 57.476 30.769 0.00 0.00 0.00 1.40
5492 5927 5.945191 TGAACTCAGATGGCATAAACATGAA 59.055 36.000 0.00 0.00 0.00 2.57
5493 5928 5.499313 TGAACTCAGATGGCATAAACATGA 58.501 37.500 0.00 0.00 0.00 3.07
5540 5975 2.098770 GCAAGGCATAAAAGAGCAGGAG 59.901 50.000 0.00 0.00 0.00 3.69
5557 5992 2.354203 GGTCCAGTACCTGAGAAGCAAG 60.354 54.545 0.00 0.00 45.75 4.01
5568 6003 0.979187 TGGGAATCCGGTCCAGTACC 60.979 60.000 12.84 0.00 45.77 3.34
5569 6004 1.070289 GATGGGAATCCGGTCCAGTAC 59.930 57.143 12.84 0.00 39.70 2.73
5570 6005 1.420430 GATGGGAATCCGGTCCAGTA 58.580 55.000 12.84 0.00 39.70 2.74
5571 6006 1.686325 CGATGGGAATCCGGTCCAGT 61.686 60.000 12.84 0.83 39.70 4.00
5572 6007 1.069765 CGATGGGAATCCGGTCCAG 59.930 63.158 12.84 0.00 39.70 3.86
5574 6009 2.280865 GCGATGGGAATCCGGTCC 60.281 66.667 0.00 0.89 36.90 4.46
5576 6011 4.910585 GCGCGATGGGAATCCGGT 62.911 66.667 12.10 0.00 35.24 5.28
5579 6014 4.562425 TGGGCGCGATGGGAATCC 62.562 66.667 12.10 0.00 0.00 3.01
5580 6015 2.974698 CTGGGCGCGATGGGAATC 60.975 66.667 12.10 0.00 0.00 2.52
5581 6016 3.757248 GACTGGGCGCGATGGGAAT 62.757 63.158 12.10 0.00 0.00 3.01
5584 6019 3.088941 TTAGACTGGGCGCGATGGG 62.089 63.158 12.10 0.00 0.00 4.00
5585 6020 1.883084 GTTAGACTGGGCGCGATGG 60.883 63.158 12.10 0.00 0.00 3.51
5586 6021 1.883084 GGTTAGACTGGGCGCGATG 60.883 63.158 12.10 0.00 0.00 3.84
5587 6022 2.499685 GGTTAGACTGGGCGCGAT 59.500 61.111 12.10 0.00 0.00 4.58
5588 6023 4.124351 CGGTTAGACTGGGCGCGA 62.124 66.667 12.10 0.00 0.00 5.87
5592 6027 4.832608 CCGGCGGTTAGACTGGGC 62.833 72.222 19.97 0.00 0.00 5.36
5593 6028 4.832608 GCCGGCGGTTAGACTGGG 62.833 72.222 28.82 0.00 0.00 4.45
5598 6033 1.519898 GATTTCGCCGGCGGTTAGA 60.520 57.895 44.95 26.01 40.25 2.10
5600 6035 2.886604 CGATTTCGCCGGCGGTTA 60.887 61.111 44.95 30.60 40.25 2.85
5601 6036 4.745751 TCGATTTCGCCGGCGGTT 62.746 61.111 44.95 30.42 40.25 4.44
5605 6040 4.832608 AGGGTCGATTTCGCCGGC 62.833 66.667 19.07 19.07 39.60 6.13
5606 6041 2.585247 GAGGGTCGATTTCGCCGG 60.585 66.667 0.00 0.00 39.60 6.13
5607 6042 1.589196 GAGAGGGTCGATTTCGCCG 60.589 63.158 0.00 0.00 39.60 6.46
5608 6043 0.249114 GAGAGAGGGTCGATTTCGCC 60.249 60.000 0.00 0.40 39.60 5.54
5609 6044 0.249114 GGAGAGAGGGTCGATTTCGC 60.249 60.000 0.00 0.00 39.60 4.70
5610 6045 1.335496 GAGGAGAGAGGGTCGATTTCG 59.665 57.143 0.00 0.00 41.45 3.46
5612 6047 1.689892 GGGAGGAGAGAGGGTCGATTT 60.690 57.143 0.00 0.00 0.00 2.17
5613 6048 0.105913 GGGAGGAGAGAGGGTCGATT 60.106 60.000 0.00 0.00 0.00 3.34
5615 6050 1.619975 AGGGAGGAGAGAGGGTCGA 60.620 63.158 0.00 0.00 0.00 4.20
5616 6051 1.454847 CAGGGAGGAGAGAGGGTCG 60.455 68.421 0.00 0.00 0.00 4.79
5617 6052 1.075600 CCAGGGAGGAGAGAGGGTC 60.076 68.421 0.00 0.00 41.22 4.46
5619 6054 0.689412 GAACCAGGGAGGAGAGAGGG 60.689 65.000 0.00 0.00 41.22 4.30
5620 6055 0.041833 TGAACCAGGGAGGAGAGAGG 59.958 60.000 0.00 0.00 41.22 3.69
5621 6056 1.484038 CTGAACCAGGGAGGAGAGAG 58.516 60.000 0.00 0.00 41.22 3.20
5636 6525 1.595109 CTCACAGCACGCACCTGAA 60.595 57.895 4.80 0.00 34.47 3.02
5639 6528 3.873026 GAGCTCACAGCACGCACCT 62.873 63.158 9.40 0.00 45.56 4.00
5642 6531 1.665916 GAAGAGCTCACAGCACGCA 60.666 57.895 17.77 0.00 45.56 5.24
5646 6535 2.047844 GCGGAAGAGCTCACAGCA 60.048 61.111 22.64 0.00 45.56 4.41
5658 6547 0.893270 CACCACCAGAAATGGCGGAA 60.893 55.000 8.29 0.00 41.31 4.30
5662 6551 1.607467 AGGCACCACCAGAAATGGC 60.607 57.895 0.00 0.00 41.31 4.40
5672 6561 3.857309 AAGGCAGAGCAGGCACCAC 62.857 63.158 0.00 0.00 36.37 4.16
5673 6562 3.137385 AAAGGCAGAGCAGGCACCA 62.137 57.895 0.00 0.00 36.37 4.17
5674 6563 2.282745 AAAGGCAGAGCAGGCACC 60.283 61.111 0.00 0.00 36.37 5.01
5675 6564 2.338785 GGAAAGGCAGAGCAGGCAC 61.339 63.158 0.00 0.00 36.37 5.01
5678 6567 0.679321 GGAAGGAAAGGCAGAGCAGG 60.679 60.000 0.00 0.00 0.00 4.85
5691 6580 2.500098 CGTGAGGAAATGGTAGGAAGGA 59.500 50.000 0.00 0.00 0.00 3.36
5710 6600 2.504367 GGCCATATTAGATGGTTGCGT 58.496 47.619 7.74 0.00 41.17 5.24
5767 6657 2.581354 CAGCTTCTCCAGGACCGG 59.419 66.667 0.00 0.00 0.00 5.28
5769 6659 2.270527 GCCAGCTTCTCCAGGACC 59.729 66.667 0.00 0.00 0.00 4.46
5810 6700 1.402968 GAACTATCACCTCGCCACGTA 59.597 52.381 0.00 0.00 0.00 3.57
5811 6701 0.172803 GAACTATCACCTCGCCACGT 59.827 55.000 0.00 0.00 0.00 4.49
5812 6702 0.527817 GGAACTATCACCTCGCCACG 60.528 60.000 0.00 0.00 0.00 4.94
5813 6703 0.824759 AGGAACTATCACCTCGCCAC 59.175 55.000 0.00 0.00 36.02 5.01
5837 6727 1.521010 CCATGTGCTCGAGCTCTGG 60.521 63.158 35.27 30.60 42.66 3.86
5860 6750 0.831307 GGGACAGCCTTACGAGGAAT 59.169 55.000 0.00 0.00 46.74 3.01
5883 6773 3.003173 CTGCTTCGGGGTCCTCCA 61.003 66.667 0.00 0.00 37.22 3.86
5901 6791 2.436646 AATGGACGCCGCCTTCAG 60.437 61.111 0.00 0.00 0.00 3.02
5902 6792 2.745884 CAATGGACGCCGCCTTCA 60.746 61.111 0.00 0.00 0.00 3.02
5903 6793 2.746277 ACAATGGACGCCGCCTTC 60.746 61.111 0.00 0.00 0.00 3.46
5904 6794 3.055719 CACAATGGACGCCGCCTT 61.056 61.111 0.00 0.00 0.00 4.35
5908 6798 4.715523 ACCCCACAATGGACGCCG 62.716 66.667 0.00 0.00 40.96 6.46
5909 6799 1.906333 AAACCCCACAATGGACGCC 60.906 57.895 0.00 0.00 40.96 5.68
5910 6800 1.288752 CAAACCCCACAATGGACGC 59.711 57.895 0.00 0.00 40.96 5.19
5911 6801 0.825840 ACCAAACCCCACAATGGACG 60.826 55.000 0.00 0.00 40.96 4.79
5912 6802 0.678950 CACCAAACCCCACAATGGAC 59.321 55.000 0.00 0.00 40.96 4.02
5913 6803 0.470833 CCACCAAACCCCACAATGGA 60.471 55.000 0.00 0.00 40.96 3.41
5914 6804 1.479368 CCCACCAAACCCCACAATGG 61.479 60.000 0.00 0.00 38.91 3.16
5915 6805 0.470833 TCCCACCAAACCCCACAATG 60.471 55.000 0.00 0.00 0.00 2.82
5916 6806 0.491371 ATCCCACCAAACCCCACAAT 59.509 50.000 0.00 0.00 0.00 2.71
5917 6807 0.470833 CATCCCACCAAACCCCACAA 60.471 55.000 0.00 0.00 0.00 3.33
5918 6808 1.154921 CATCCCACCAAACCCCACA 59.845 57.895 0.00 0.00 0.00 4.17
5919 6809 1.609210 CCATCCCACCAAACCCCAC 60.609 63.158 0.00 0.00 0.00 4.61
5920 6810 2.857889 CCATCCCACCAAACCCCA 59.142 61.111 0.00 0.00 0.00 4.96
5921 6811 2.038813 CCCATCCCACCAAACCCC 59.961 66.667 0.00 0.00 0.00 4.95
5922 6812 2.683572 GCCCATCCCACCAAACCC 60.684 66.667 0.00 0.00 0.00 4.11
5923 6813 1.535202 TTGCCCATCCCACCAAACC 60.535 57.895 0.00 0.00 0.00 3.27
5924 6814 0.541764 TCTTGCCCATCCCACCAAAC 60.542 55.000 0.00 0.00 0.00 2.93
5925 6815 0.541764 GTCTTGCCCATCCCACCAAA 60.542 55.000 0.00 0.00 0.00 3.28
5926 6816 1.076549 GTCTTGCCCATCCCACCAA 59.923 57.895 0.00 0.00 0.00 3.67
5927 6817 2.763215 GTCTTGCCCATCCCACCA 59.237 61.111 0.00 0.00 0.00 4.17
5928 6818 2.438434 CGTCTTGCCCATCCCACC 60.438 66.667 0.00 0.00 0.00 4.61
5929 6819 1.745489 GTCGTCTTGCCCATCCCAC 60.745 63.158 0.00 0.00 0.00 4.61
5930 6820 1.899437 GAGTCGTCTTGCCCATCCCA 61.899 60.000 0.00 0.00 0.00 4.37
5931 6821 1.153349 GAGTCGTCTTGCCCATCCC 60.153 63.158 0.00 0.00 0.00 3.85
5932 6822 1.153349 GGAGTCGTCTTGCCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
5933 6823 0.460987 CAGGAGTCGTCTTGCCCATC 60.461 60.000 0.00 0.00 0.00 3.51
5934 6824 1.599047 CAGGAGTCGTCTTGCCCAT 59.401 57.895 0.00 0.00 0.00 4.00
5935 6825 3.059982 CAGGAGTCGTCTTGCCCA 58.940 61.111 0.00 0.00 0.00 5.36
5939 6829 0.951040 GGTTGGCAGGAGTCGTCTTG 60.951 60.000 0.00 0.00 32.88 3.02
5940 6830 1.371558 GGTTGGCAGGAGTCGTCTT 59.628 57.895 0.00 0.00 0.00 3.01
5941 6831 1.407656 TTGGTTGGCAGGAGTCGTCT 61.408 55.000 0.00 0.00 0.00 4.18
5942 6832 0.534203 TTTGGTTGGCAGGAGTCGTC 60.534 55.000 0.00 0.00 0.00 4.20
5943 6833 0.110486 ATTTGGTTGGCAGGAGTCGT 59.890 50.000 0.00 0.00 0.00 4.34
5944 6834 0.804989 GATTTGGTTGGCAGGAGTCG 59.195 55.000 0.00 0.00 0.00 4.18
5945 6835 2.206576 AGATTTGGTTGGCAGGAGTC 57.793 50.000 0.00 0.00 0.00 3.36
5946 6836 2.290960 GGTAGATTTGGTTGGCAGGAGT 60.291 50.000 0.00 0.00 0.00 3.85
5947 6837 2.290896 TGGTAGATTTGGTTGGCAGGAG 60.291 50.000 0.00 0.00 0.00 3.69
5948 6838 1.707989 TGGTAGATTTGGTTGGCAGGA 59.292 47.619 0.00 0.00 0.00 3.86
5949 6839 1.818674 GTGGTAGATTTGGTTGGCAGG 59.181 52.381 0.00 0.00 0.00 4.85
5950 6840 2.749621 GAGTGGTAGATTTGGTTGGCAG 59.250 50.000 0.00 0.00 0.00 4.85
5951 6841 2.790433 GAGTGGTAGATTTGGTTGGCA 58.210 47.619 0.00 0.00 0.00 4.92
5952 6842 1.737793 CGAGTGGTAGATTTGGTTGGC 59.262 52.381 0.00 0.00 0.00 4.52
5953 6843 3.053831 ACGAGTGGTAGATTTGGTTGG 57.946 47.619 0.00 0.00 0.00 3.77
5954 6844 4.320202 CCAAACGAGTGGTAGATTTGGTTG 60.320 45.833 5.99 0.00 42.81 3.77
5955 6845 3.818773 CCAAACGAGTGGTAGATTTGGTT 59.181 43.478 5.99 0.00 42.81 3.67
5956 6846 3.071892 TCCAAACGAGTGGTAGATTTGGT 59.928 43.478 12.44 0.00 46.20 3.67
5958 6848 4.928661 CTCCAAACGAGTGGTAGATTTG 57.071 45.455 8.62 0.00 39.88 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.