Multiple sequence alignment - TraesCS7A01G408200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G408200 chr7A 100.000 2783 0 0 1 2783 594433548 594436330 0.000000e+00 5140
1 TraesCS7A01G408200 chr7A 96.930 912 27 1 1873 2783 734096215 734095304 0.000000e+00 1528
2 TraesCS7A01G408200 chr7A 85.899 929 89 18 826 1748 628645433 628646325 0.000000e+00 952
3 TraesCS7A01G408200 chr7A 97.704 392 8 1 346 736 592084837 592084446 0.000000e+00 673
4 TraesCS7A01G408200 chr3A 97.697 912 20 1 1873 2783 534484189 534483278 0.000000e+00 1567
5 TraesCS7A01G408200 chr4A 97.582 910 21 1 1875 2783 737181628 737182537 0.000000e+00 1557
6 TraesCS7A01G408200 chr4A 97.033 910 26 1 1875 2783 703217427 703216518 0.000000e+00 1530
7 TraesCS7A01G408200 chr4A 95.509 913 40 1 1872 2783 731973625 731974537 0.000000e+00 1458
8 TraesCS7A01G408200 chr4A 95.696 395 16 1 346 739 737178099 737178493 3.910000e-178 634
9 TraesCS7A01G408200 chr4A 95.312 64 3 0 1756 1819 731984085 731984148 4.900000e-18 102
10 TraesCS7A01G408200 chr3B 95.580 905 39 1 1875 2778 28857605 28856701 0.000000e+00 1448
11 TraesCS7A01G408200 chr3B 96.154 390 14 1 346 734 829494225 829494614 1.090000e-178 636
12 TraesCS7A01G408200 chr4B 95.359 905 41 1 1875 2778 193447342 193446438 0.000000e+00 1437
13 TraesCS7A01G408200 chr4B 95.138 905 43 1 1875 2778 579439973 579439069 0.000000e+00 1426
14 TraesCS7A01G408200 chr6B 95.149 907 43 1 1873 2778 549098905 549097999 0.000000e+00 1430
15 TraesCS7A01G408200 chr6B 96.954 394 10 2 346 738 96230098 96230490 0.000000e+00 660
16 TraesCS7A01G408200 chr7D 91.765 1020 58 4 738 1757 518768717 518769710 0.000000e+00 1395
17 TraesCS7A01G408200 chr7D 85.525 905 88 23 845 1732 545267072 545266194 0.000000e+00 905
18 TraesCS7A01G408200 chr2B 88.474 911 76 12 845 1738 182133880 182132982 0.000000e+00 1074
19 TraesCS7A01G408200 chr2B 82.965 904 74 29 845 1738 135512557 135513390 0.000000e+00 743
20 TraesCS7A01G408200 chr2B 96.717 396 12 1 346 740 534232123 534232518 0.000000e+00 658
21 TraesCS7A01G408200 chr2B 96.173 392 14 1 346 736 231628565 231628956 8.400000e-180 640
22 TraesCS7A01G408200 chr6A 87.199 914 71 17 841 1748 107264326 107265199 0.000000e+00 998
23 TraesCS7A01G408200 chr6A 95.718 397 15 2 346 741 529047467 529047862 3.020000e-179 638
24 TraesCS7A01G408200 chr5D 86.966 913 76 19 845 1748 289421182 289420304 0.000000e+00 987
25 TraesCS7A01G408200 chr5D 84.522 659 59 18 845 1494 289727226 289726602 1.830000e-171 612
26 TraesCS7A01G408200 chr1B 86.644 876 91 14 891 1748 398961888 398962755 0.000000e+00 946
27 TraesCS7A01G408200 chr1B 88.102 706 66 5 1045 1747 398840324 398839634 0.000000e+00 822
28 TraesCS7A01G408200 chr7B 86.283 904 76 29 827 1722 589934889 589935752 0.000000e+00 939
29 TraesCS7A01G408200 chr7B 96.438 393 12 2 346 736 642033430 642033822 0.000000e+00 647
30 TraesCS7A01G408200 chr6D 89.371 715 68 4 1044 1757 124609299 124608592 0.000000e+00 893
31 TraesCS7A01G408200 chr6D 88.828 734 65 7 1019 1748 122979648 122980368 0.000000e+00 885
32 TraesCS7A01G408200 chr1A 97.187 391 10 1 346 735 551056215 551055825 0.000000e+00 660


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G408200 chr7A 594433548 594436330 2782 False 5140.0 5140 100.000 1 2783 1 chr7A.!!$F1 2782
1 TraesCS7A01G408200 chr7A 734095304 734096215 911 True 1528.0 1528 96.930 1873 2783 1 chr7A.!!$R2 910
2 TraesCS7A01G408200 chr7A 628645433 628646325 892 False 952.0 952 85.899 826 1748 1 chr7A.!!$F2 922
3 TraesCS7A01G408200 chr3A 534483278 534484189 911 True 1567.0 1567 97.697 1873 2783 1 chr3A.!!$R1 910
4 TraesCS7A01G408200 chr4A 703216518 703217427 909 True 1530.0 1530 97.033 1875 2783 1 chr4A.!!$R1 908
5 TraesCS7A01G408200 chr4A 731973625 731974537 912 False 1458.0 1458 95.509 1872 2783 1 chr4A.!!$F1 911
6 TraesCS7A01G408200 chr4A 737178099 737182537 4438 False 1095.5 1557 96.639 346 2783 2 chr4A.!!$F3 2437
7 TraesCS7A01G408200 chr3B 28856701 28857605 904 True 1448.0 1448 95.580 1875 2778 1 chr3B.!!$R1 903
8 TraesCS7A01G408200 chr4B 193446438 193447342 904 True 1437.0 1437 95.359 1875 2778 1 chr4B.!!$R1 903
9 TraesCS7A01G408200 chr4B 579439069 579439973 904 True 1426.0 1426 95.138 1875 2778 1 chr4B.!!$R2 903
10 TraesCS7A01G408200 chr6B 549097999 549098905 906 True 1430.0 1430 95.149 1873 2778 1 chr6B.!!$R1 905
11 TraesCS7A01G408200 chr7D 518768717 518769710 993 False 1395.0 1395 91.765 738 1757 1 chr7D.!!$F1 1019
12 TraesCS7A01G408200 chr7D 545266194 545267072 878 True 905.0 905 85.525 845 1732 1 chr7D.!!$R1 887
13 TraesCS7A01G408200 chr2B 182132982 182133880 898 True 1074.0 1074 88.474 845 1738 1 chr2B.!!$R1 893
14 TraesCS7A01G408200 chr2B 135512557 135513390 833 False 743.0 743 82.965 845 1738 1 chr2B.!!$F1 893
15 TraesCS7A01G408200 chr6A 107264326 107265199 873 False 998.0 998 87.199 841 1748 1 chr6A.!!$F1 907
16 TraesCS7A01G408200 chr5D 289420304 289421182 878 True 987.0 987 86.966 845 1748 1 chr5D.!!$R1 903
17 TraesCS7A01G408200 chr5D 289726602 289727226 624 True 612.0 612 84.522 845 1494 1 chr5D.!!$R2 649
18 TraesCS7A01G408200 chr1B 398961888 398962755 867 False 946.0 946 86.644 891 1748 1 chr1B.!!$F1 857
19 TraesCS7A01G408200 chr1B 398839634 398840324 690 True 822.0 822 88.102 1045 1747 1 chr1B.!!$R1 702
20 TraesCS7A01G408200 chr7B 589934889 589935752 863 False 939.0 939 86.283 827 1722 1 chr7B.!!$F1 895
21 TraesCS7A01G408200 chr6D 124608592 124609299 707 True 893.0 893 89.371 1044 1757 1 chr6D.!!$R1 713
22 TraesCS7A01G408200 chr6D 122979648 122980368 720 False 885.0 885 88.828 1019 1748 1 chr6D.!!$F1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.101759 TCAAGTATGTCGCGCCCTAC 59.898 55.0 0.00 0.0 0.0 3.18 F
326 327 0.468648 GCCCTACCGGTTAAGATGCT 59.531 55.0 15.04 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 3573 0.036010 CCATCTGCTCCACCTTTCGT 60.036 55.000 0.0 0.0 0.0 3.85 R
2232 4510 1.268079 GTCTTTGCTTCAGGAGTTGGC 59.732 52.381 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 8.728337 TGTTCATGGATTTGAAAATTTTCACA 57.272 26.923 28.78 23.88 45.99 3.58
66 67 8.610896 TGTTCATGGATTTGAAAATTTTCACAC 58.389 29.630 28.78 21.50 45.99 3.82
67 68 8.610896 GTTCATGGATTTGAAAATTTTCACACA 58.389 29.630 28.78 23.34 45.99 3.72
68 69 8.905660 TCATGGATTTGAAAATTTTCACACAT 57.094 26.923 28.78 24.20 45.99 3.21
69 70 9.339850 TCATGGATTTGAAAATTTTCACACATT 57.660 25.926 28.78 13.70 45.99 2.71
70 71 9.953697 CATGGATTTGAAAATTTTCACACATTT 57.046 25.926 28.78 11.05 45.99 2.32
108 109 9.462174 TCATGAAAAAGCTACAACAATAGTTTG 57.538 29.630 0.00 0.00 35.28 2.93
109 110 9.462174 CATGAAAAAGCTACAACAATAGTTTGA 57.538 29.630 0.00 0.00 35.28 2.69
110 111 9.683069 ATGAAAAAGCTACAACAATAGTTTGAG 57.317 29.630 0.00 0.00 35.28 3.02
111 112 8.898761 TGAAAAAGCTACAACAATAGTTTGAGA 58.101 29.630 0.00 0.00 35.28 3.27
112 113 9.730420 GAAAAAGCTACAACAATAGTTTGAGAA 57.270 29.630 0.00 0.00 35.28 2.87
116 117 9.683069 AAGCTACAACAATAGTTTGAGAAATTG 57.317 29.630 0.00 0.00 35.28 2.32
117 118 9.066892 AGCTACAACAATAGTTTGAGAAATTGA 57.933 29.630 0.00 0.00 35.28 2.57
118 119 9.677567 GCTACAACAATAGTTTGAGAAATTGAA 57.322 29.630 0.00 0.00 35.28 2.69
185 186 9.907576 TTTTATTGTAAAAAGTTCACGCATTTG 57.092 25.926 0.00 0.00 0.00 2.32
186 187 8.858003 TTATTGTAAAAAGTTCACGCATTTGA 57.142 26.923 0.00 0.00 0.00 2.69
187 188 7.763172 ATTGTAAAAAGTTCACGCATTTGAA 57.237 28.000 0.00 0.00 32.94 2.69
188 189 7.582435 TTGTAAAAAGTTCACGCATTTGAAA 57.418 28.000 0.00 0.00 37.24 2.69
189 190 7.582435 TGTAAAAAGTTCACGCATTTGAAAA 57.418 28.000 0.00 0.00 37.24 2.29
190 191 8.018677 TGTAAAAAGTTCACGCATTTGAAAAA 57.981 26.923 0.00 0.00 37.24 1.94
248 249 9.863845 ATTATAATAAAACAGAACAAAACCCGG 57.136 29.630 0.00 0.00 0.00 5.73
249 250 5.601583 AATAAAACAGAACAAAACCCGGT 57.398 34.783 0.00 0.00 0.00 5.28
250 251 3.965379 AAAACAGAACAAAACCCGGTT 57.035 38.095 0.00 0.00 0.00 4.44
251 252 3.965379 AAACAGAACAAAACCCGGTTT 57.035 38.095 9.92 9.92 37.34 3.27
252 253 5.402997 AAAACAGAACAAAACCCGGTTTA 57.597 34.783 16.03 0.00 34.43 2.01
253 254 4.642445 AACAGAACAAAACCCGGTTTAG 57.358 40.909 16.03 5.28 34.43 1.85
254 255 2.953648 ACAGAACAAAACCCGGTTTAGG 59.046 45.455 16.03 13.28 34.43 2.69
255 256 3.215975 CAGAACAAAACCCGGTTTAGGA 58.784 45.455 16.03 0.00 34.43 2.94
256 257 3.633065 CAGAACAAAACCCGGTTTAGGAA 59.367 43.478 16.03 0.00 34.43 3.36
257 258 4.098196 CAGAACAAAACCCGGTTTAGGAAA 59.902 41.667 16.03 0.00 34.43 3.13
258 259 4.710865 AGAACAAAACCCGGTTTAGGAAAA 59.289 37.500 16.03 0.00 34.43 2.29
259 260 4.389890 ACAAAACCCGGTTTAGGAAAAC 57.610 40.909 16.03 0.00 43.58 2.43
260 261 3.768215 ACAAAACCCGGTTTAGGAAAACA 59.232 39.130 16.03 0.00 45.68 2.83
261 262 4.222366 ACAAAACCCGGTTTAGGAAAACAA 59.778 37.500 16.03 0.00 45.68 2.83
262 263 5.176592 CAAAACCCGGTTTAGGAAAACAAA 58.823 37.500 16.03 0.00 45.68 2.83
263 264 5.417754 AAACCCGGTTTAGGAAAACAAAA 57.582 34.783 14.16 0.00 45.68 2.44
264 265 5.417754 AACCCGGTTTAGGAAAACAAAAA 57.582 34.783 0.00 0.00 45.68 1.94
285 286 3.547054 AAACCCGGAAAAAGGAAAACC 57.453 42.857 0.73 0.00 0.00 3.27
286 287 2.162264 ACCCGGAAAAAGGAAAACCA 57.838 45.000 0.73 0.00 0.00 3.67
287 288 2.684943 ACCCGGAAAAAGGAAAACCAT 58.315 42.857 0.73 0.00 0.00 3.55
288 289 3.042682 ACCCGGAAAAAGGAAAACCATT 58.957 40.909 0.73 0.00 0.00 3.16
289 290 3.456644 ACCCGGAAAAAGGAAAACCATTT 59.543 39.130 0.73 0.00 0.00 2.32
290 291 4.062293 CCCGGAAAAAGGAAAACCATTTC 58.938 43.478 0.73 0.00 43.46 2.17
291 292 3.738791 CCGGAAAAAGGAAAACCATTTCG 59.261 43.478 0.00 0.00 44.83 3.46
292 293 4.364860 CGGAAAAAGGAAAACCATTTCGT 58.635 39.130 0.00 0.00 44.83 3.85
293 294 4.443063 CGGAAAAAGGAAAACCATTTCGTC 59.557 41.667 0.00 0.00 44.83 4.20
294 295 5.597806 GGAAAAAGGAAAACCATTTCGTCT 58.402 37.500 0.00 0.00 44.83 4.18
295 296 5.690409 GGAAAAAGGAAAACCATTTCGTCTC 59.310 40.000 0.00 0.00 44.83 3.36
296 297 5.845391 AAAAGGAAAACCATTTCGTCTCA 57.155 34.783 0.00 0.00 44.83 3.27
297 298 5.845391 AAAGGAAAACCATTTCGTCTCAA 57.155 34.783 0.00 0.00 44.83 3.02
298 299 5.438761 AAGGAAAACCATTTCGTCTCAAG 57.561 39.130 0.00 0.00 44.83 3.02
299 300 4.461198 AGGAAAACCATTTCGTCTCAAGT 58.539 39.130 0.00 0.00 44.83 3.16
300 301 5.617252 AGGAAAACCATTTCGTCTCAAGTA 58.383 37.500 0.00 0.00 44.83 2.24
301 302 6.238648 AGGAAAACCATTTCGTCTCAAGTAT 58.761 36.000 0.00 0.00 44.83 2.12
302 303 6.149474 AGGAAAACCATTTCGTCTCAAGTATG 59.851 38.462 0.00 0.00 44.83 2.39
303 304 6.072673 GGAAAACCATTTCGTCTCAAGTATGT 60.073 38.462 0.00 0.00 44.83 2.29
304 305 6.481954 AAACCATTTCGTCTCAAGTATGTC 57.518 37.500 0.00 0.00 0.00 3.06
305 306 4.174009 ACCATTTCGTCTCAAGTATGTCG 58.826 43.478 0.00 0.00 0.00 4.35
306 307 3.000322 CCATTTCGTCTCAAGTATGTCGC 60.000 47.826 0.00 0.00 0.00 5.19
307 308 1.891178 TTCGTCTCAAGTATGTCGCG 58.109 50.000 0.00 0.00 0.00 5.87
308 309 0.522705 TCGTCTCAAGTATGTCGCGC 60.523 55.000 0.00 0.00 0.00 6.86
309 310 1.472276 CGTCTCAAGTATGTCGCGCC 61.472 60.000 0.00 0.00 0.00 6.53
310 311 1.141019 TCTCAAGTATGTCGCGCCC 59.859 57.895 0.00 0.00 0.00 6.13
311 312 1.141881 CTCAAGTATGTCGCGCCCT 59.858 57.895 0.00 0.00 0.00 5.19
312 313 0.384309 CTCAAGTATGTCGCGCCCTA 59.616 55.000 0.00 0.00 0.00 3.53
313 314 0.101759 TCAAGTATGTCGCGCCCTAC 59.898 55.000 0.00 0.00 0.00 3.18
314 315 0.874607 CAAGTATGTCGCGCCCTACC 60.875 60.000 0.00 0.00 0.00 3.18
315 316 2.345880 AAGTATGTCGCGCCCTACCG 62.346 60.000 0.00 0.00 0.00 4.02
316 317 3.598715 TATGTCGCGCCCTACCGG 61.599 66.667 0.00 0.00 0.00 5.28
319 320 3.825611 GTCGCGCCCTACCGGTTA 61.826 66.667 15.04 0.00 0.00 2.85
320 321 3.067439 TCGCGCCCTACCGGTTAA 61.067 61.111 15.04 0.00 0.00 2.01
321 322 2.584143 CGCGCCCTACCGGTTAAG 60.584 66.667 15.04 4.49 0.00 1.85
322 323 2.894919 GCGCCCTACCGGTTAAGA 59.105 61.111 15.04 0.00 0.00 2.10
323 324 1.444672 GCGCCCTACCGGTTAAGAT 59.555 57.895 15.04 0.00 0.00 2.40
324 325 0.878961 GCGCCCTACCGGTTAAGATG 60.879 60.000 15.04 0.69 0.00 2.90
325 326 0.878961 CGCCCTACCGGTTAAGATGC 60.879 60.000 15.04 10.40 0.00 3.91
326 327 0.468648 GCCCTACCGGTTAAGATGCT 59.531 55.000 15.04 0.00 0.00 3.79
327 328 1.134189 GCCCTACCGGTTAAGATGCTT 60.134 52.381 15.04 0.00 0.00 3.91
328 329 2.103601 GCCCTACCGGTTAAGATGCTTA 59.896 50.000 15.04 0.00 0.00 3.09
329 330 3.432608 GCCCTACCGGTTAAGATGCTTAA 60.433 47.826 15.04 0.00 0.00 1.85
330 331 4.124970 CCCTACCGGTTAAGATGCTTAAC 58.875 47.826 15.04 17.42 34.92 2.01
331 332 4.141779 CCCTACCGGTTAAGATGCTTAACT 60.142 45.833 15.04 10.82 35.73 2.24
332 333 5.048507 CCTACCGGTTAAGATGCTTAACTC 58.951 45.833 15.04 14.57 35.73 3.01
333 334 4.820894 ACCGGTTAAGATGCTTAACTCT 57.179 40.909 22.16 8.49 35.73 3.24
334 335 4.504858 ACCGGTTAAGATGCTTAACTCTG 58.495 43.478 22.16 15.52 35.73 3.35
335 336 4.222145 ACCGGTTAAGATGCTTAACTCTGA 59.778 41.667 22.16 0.00 35.73 3.27
336 337 5.175859 CCGGTTAAGATGCTTAACTCTGAA 58.824 41.667 22.16 0.00 35.73 3.02
337 338 5.817816 CCGGTTAAGATGCTTAACTCTGAAT 59.182 40.000 22.16 0.00 35.73 2.57
338 339 6.316390 CCGGTTAAGATGCTTAACTCTGAATT 59.684 38.462 22.16 0.00 35.73 2.17
339 340 7.182761 CGGTTAAGATGCTTAACTCTGAATTG 58.817 38.462 22.16 6.15 35.73 2.32
340 341 7.064609 CGGTTAAGATGCTTAACTCTGAATTGA 59.935 37.037 22.16 0.00 35.73 2.57
341 342 8.730680 GGTTAAGATGCTTAACTCTGAATTGAA 58.269 33.333 22.16 0.00 35.73 2.69
342 343 9.766277 GTTAAGATGCTTAACTCTGAATTGAAG 57.234 33.333 18.07 0.00 33.39 3.02
343 344 6.998968 AGATGCTTAACTCTGAATTGAAGG 57.001 37.500 0.00 0.00 0.00 3.46
344 345 6.479884 AGATGCTTAACTCTGAATTGAAGGT 58.520 36.000 0.00 0.00 0.00 3.50
416 417 2.831685 ACGACTGGTTTATGCAGTGA 57.168 45.000 0.00 0.00 0.00 3.41
428 429 2.177950 GCAGTGAGGTGCAGGAATG 58.822 57.895 0.00 0.00 43.41 2.67
529 530 4.021719 ACCCTTGCTGATTGTTTTCATCTG 60.022 41.667 0.00 0.00 0.00 2.90
530 531 3.924686 CCTTGCTGATTGTTTTCATCTGC 59.075 43.478 5.18 5.18 38.96 4.26
533 534 2.231964 GCTGATTGTTTTCATCTGCCCA 59.768 45.455 0.00 0.00 34.55 5.36
534 535 3.118884 GCTGATTGTTTTCATCTGCCCAT 60.119 43.478 0.00 0.00 34.55 4.00
535 536 4.430007 CTGATTGTTTTCATCTGCCCATG 58.570 43.478 0.00 0.00 0.00 3.66
536 537 4.087907 TGATTGTTTTCATCTGCCCATGA 58.912 39.130 0.00 0.00 0.00 3.07
537 538 3.940209 TTGTTTTCATCTGCCCATGAC 57.060 42.857 0.00 0.00 32.28 3.06
539 540 3.433343 TGTTTTCATCTGCCCATGACAT 58.567 40.909 0.00 0.00 32.28 3.06
540 541 3.444742 TGTTTTCATCTGCCCATGACATC 59.555 43.478 0.00 0.00 32.28 3.06
560 562 5.652014 ACATCCCGAATATTTCTTTTGCTCA 59.348 36.000 0.00 0.00 0.00 4.26
567 569 6.195244 CGAATATTTCTTTTGCTCATTGTCCG 59.805 38.462 0.00 0.00 0.00 4.79
700 702 9.137459 TCTTTGATGTAACACTTTCCCAAATTA 57.863 29.630 0.00 0.00 0.00 1.40
715 717 8.924511 TTCCCAAATTAAATAAAATGCCACAA 57.075 26.923 0.00 0.00 0.00 3.33
770 772 5.227908 TGAAGGTAGAAAGTTAACAGAGCG 58.772 41.667 8.61 0.00 0.00 5.03
782 784 1.581402 CAGAGCGAGCGACTACACG 60.581 63.158 0.00 0.00 0.00 4.49
810 812 1.879796 CGGAAGCCATTATCCCTGAGC 60.880 57.143 0.00 0.00 31.73 4.26
824 826 2.619849 CCCTGAGCTTCCAACATGTCAT 60.620 50.000 0.00 0.00 0.00 3.06
919 928 1.079888 CAAATTCCTTGCCGCCACC 60.080 57.895 0.00 0.00 0.00 4.61
929 940 2.948720 GCCGCCACCTCTCTGTCTT 61.949 63.158 0.00 0.00 0.00 3.01
1047 1302 2.355986 CCCTCCCAACGTCGGATCA 61.356 63.158 0.00 0.00 0.00 2.92
1152 1679 3.449227 CGCCGACCTGCACTCCTA 61.449 66.667 0.00 0.00 0.00 2.94
1426 3228 4.873129 GAATCTCCGGCGAGCGCA 62.873 66.667 17.16 0.00 44.11 6.09
1608 3611 1.564622 CGAACACCGTGCAGTTCAG 59.435 57.895 14.64 5.95 43.20 3.02
1722 3900 4.570663 GATGGCTCGTCGACGGGG 62.571 72.222 36.40 27.85 40.87 5.73
1738 3916 0.321671 GGGGCTATGCTCAAGCGATA 59.678 55.000 0.00 0.00 45.83 2.92
1748 3926 4.065088 TGCTCAAGCGATATAAATCCACC 58.935 43.478 0.00 0.00 45.83 4.61
1762 4040 5.705609 AAATCCACCAATGTGTGTAAGAC 57.294 39.130 2.24 0.00 41.09 3.01
1765 4043 4.724399 TCCACCAATGTGTGTAAGACAAT 58.276 39.130 2.24 0.00 46.02 2.71
1772 4050 9.733556 ACCAATGTGTGTAAGACAATAGAATTA 57.266 29.630 0.00 0.00 46.02 1.40
1795 4073 0.611714 GAACCGGCTCAACCCTCTAA 59.388 55.000 0.00 0.00 33.26 2.10
1810 4088 0.116342 TCTAAGGGTGGCCTGTCTCA 59.884 55.000 3.32 0.00 0.00 3.27
1811 4089 1.207791 CTAAGGGTGGCCTGTCTCAT 58.792 55.000 3.32 0.00 0.00 2.90
1812 4090 2.023404 TCTAAGGGTGGCCTGTCTCATA 60.023 50.000 3.32 0.00 0.00 2.15
1813 4091 1.898863 AAGGGTGGCCTGTCTCATAT 58.101 50.000 3.32 0.00 0.00 1.78
1814 4092 2.795291 AGGGTGGCCTGTCTCATATA 57.205 50.000 3.32 0.00 0.00 0.86
1815 4093 3.282135 AGGGTGGCCTGTCTCATATAT 57.718 47.619 3.32 0.00 0.00 0.86
1816 4094 4.419984 AGGGTGGCCTGTCTCATATATA 57.580 45.455 3.32 0.00 0.00 0.86
1817 4095 4.965352 AGGGTGGCCTGTCTCATATATAT 58.035 43.478 3.32 0.00 0.00 0.86
1818 4096 6.105122 AGGGTGGCCTGTCTCATATATATA 57.895 41.667 3.32 0.00 0.00 0.86
1819 4097 6.697654 AGGGTGGCCTGTCTCATATATATAT 58.302 40.000 3.32 0.00 0.00 0.86
1820 4098 7.837191 AGGGTGGCCTGTCTCATATATATATA 58.163 38.462 3.32 4.92 0.00 0.86
1821 4099 8.468452 AGGGTGGCCTGTCTCATATATATATAT 58.532 37.037 3.32 9.12 0.00 0.86
1822 4100 9.769677 GGGTGGCCTGTCTCATATATATATATA 57.230 37.037 13.72 13.60 0.00 0.86
1909 4187 6.213802 TGAAGGGGTACAAGTTACATCATACA 59.786 38.462 0.00 0.00 0.00 2.29
1968 4246 3.207044 ACACCCTCCCTCAATCTTAGT 57.793 47.619 0.00 0.00 0.00 2.24
2152 4430 2.242047 TCAATGTGTTTCGTTCGGGA 57.758 45.000 0.00 0.00 0.00 5.14
2185 4463 5.886474 CCGGATTAGCAGATAGGTATGTAGA 59.114 44.000 0.00 0.00 0.00 2.59
2232 4510 4.970711 AGGAGGCTGTGATTGAGATATTG 58.029 43.478 0.00 0.00 0.00 1.90
2364 4642 2.366916 CTCCAGGCGATCAAGGTAGAAT 59.633 50.000 0.00 0.00 0.00 2.40
2571 4850 8.298729 TGAAGATACTGACATACTCTGTTGAT 57.701 34.615 0.00 0.00 38.54 2.57
2715 4994 6.729690 AGTAGACATAGGAGTAGTAGTCGT 57.270 41.667 5.57 5.57 0.00 4.34
2733 5012 3.058224 GTCGTTTTGCACTTAAGCATCCT 60.058 43.478 1.29 0.00 45.19 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 9.462174 CAAACTATTGTTGTAGCTTTTTCATGA 57.538 29.630 0.00 0.00 36.39 3.07
83 84 9.462174 TCAAACTATTGTTGTAGCTTTTTCATG 57.538 29.630 0.00 0.00 37.79 3.07
84 85 9.683069 CTCAAACTATTGTTGTAGCTTTTTCAT 57.317 29.630 0.00 0.00 37.79 2.57
85 86 8.898761 TCTCAAACTATTGTTGTAGCTTTTTCA 58.101 29.630 0.00 0.00 37.79 2.69
86 87 9.730420 TTCTCAAACTATTGTTGTAGCTTTTTC 57.270 29.630 0.00 0.00 37.79 2.29
90 91 9.683069 CAATTTCTCAAACTATTGTTGTAGCTT 57.317 29.630 0.00 0.00 37.79 3.74
91 92 9.066892 TCAATTTCTCAAACTATTGTTGTAGCT 57.933 29.630 0.00 0.00 37.79 3.32
92 93 9.677567 TTCAATTTCTCAAACTATTGTTGTAGC 57.322 29.630 0.00 0.00 37.79 3.58
159 160 9.907576 CAAATGCGTGAACTTTTTACAATAAAA 57.092 25.926 0.00 0.00 0.00 1.52
160 161 9.302345 TCAAATGCGTGAACTTTTTACAATAAA 57.698 25.926 0.00 0.00 0.00 1.40
161 162 8.858003 TCAAATGCGTGAACTTTTTACAATAA 57.142 26.923 0.00 0.00 0.00 1.40
162 163 8.858003 TTCAAATGCGTGAACTTTTTACAATA 57.142 26.923 0.00 0.00 32.56 1.90
163 164 7.763172 TTCAAATGCGTGAACTTTTTACAAT 57.237 28.000 0.00 0.00 32.56 2.71
164 165 7.582435 TTTCAAATGCGTGAACTTTTTACAA 57.418 28.000 0.00 0.00 37.24 2.41
165 166 7.582435 TTTTCAAATGCGTGAACTTTTTACA 57.418 28.000 0.00 0.00 37.24 2.41
222 223 9.863845 CCGGGTTTTGTTCTGTTTTATTATAAT 57.136 29.630 2.97 2.97 0.00 1.28
223 224 8.858094 ACCGGGTTTTGTTCTGTTTTATTATAA 58.142 29.630 6.32 0.00 0.00 0.98
224 225 8.406730 ACCGGGTTTTGTTCTGTTTTATTATA 57.593 30.769 6.32 0.00 0.00 0.98
225 226 7.292713 ACCGGGTTTTGTTCTGTTTTATTAT 57.707 32.000 6.32 0.00 0.00 1.28
226 227 6.712179 ACCGGGTTTTGTTCTGTTTTATTA 57.288 33.333 6.32 0.00 0.00 0.98
227 228 5.601583 ACCGGGTTTTGTTCTGTTTTATT 57.398 34.783 6.32 0.00 0.00 1.40
228 229 5.601583 AACCGGGTTTTGTTCTGTTTTAT 57.398 34.783 6.59 0.00 0.00 1.40
229 230 5.402997 AAACCGGGTTTTGTTCTGTTTTA 57.597 34.783 19.22 0.00 31.10 1.52
230 231 3.965379 AACCGGGTTTTGTTCTGTTTT 57.035 38.095 6.59 0.00 0.00 2.43
231 232 3.965379 AAACCGGGTTTTGTTCTGTTT 57.035 38.095 19.22 0.00 31.10 2.83
232 233 3.382227 CCTAAACCGGGTTTTGTTCTGTT 59.618 43.478 28.50 5.37 37.01 3.16
233 234 2.953648 CCTAAACCGGGTTTTGTTCTGT 59.046 45.455 28.50 6.10 37.01 3.41
234 235 3.215975 TCCTAAACCGGGTTTTGTTCTG 58.784 45.455 28.50 14.22 37.01 3.02
235 236 3.581265 TCCTAAACCGGGTTTTGTTCT 57.419 42.857 28.50 7.59 37.01 3.01
236 237 4.652421 TTTCCTAAACCGGGTTTTGTTC 57.348 40.909 28.50 0.00 37.01 3.18
237 238 4.222366 TGTTTTCCTAAACCGGGTTTTGTT 59.778 37.500 28.50 8.71 42.39 2.83
238 239 3.768215 TGTTTTCCTAAACCGGGTTTTGT 59.232 39.130 28.50 9.08 42.39 2.83
239 240 4.388378 TGTTTTCCTAAACCGGGTTTTG 57.612 40.909 28.50 24.97 42.39 2.44
240 241 5.417754 TTTGTTTTCCTAAACCGGGTTTT 57.582 34.783 28.50 13.79 42.39 2.43
241 242 5.417754 TTTTGTTTTCCTAAACCGGGTTT 57.582 34.783 26.79 26.79 42.39 3.27
242 243 5.417754 TTTTTGTTTTCCTAAACCGGGTT 57.582 34.783 10.96 10.96 42.39 4.11
263 264 4.263374 TGGTTTTCCTTTTTCCGGGTTTTT 60.263 37.500 0.00 0.00 41.38 1.94
264 265 3.263681 TGGTTTTCCTTTTTCCGGGTTTT 59.736 39.130 0.00 0.00 41.38 2.43
265 266 2.838813 TGGTTTTCCTTTTTCCGGGTTT 59.161 40.909 0.00 0.00 41.38 3.27
266 267 2.468915 TGGTTTTCCTTTTTCCGGGTT 58.531 42.857 0.00 0.00 41.38 4.11
267 268 2.162264 TGGTTTTCCTTTTTCCGGGT 57.838 45.000 0.00 0.00 41.38 5.28
268 269 3.762407 AATGGTTTTCCTTTTTCCGGG 57.238 42.857 0.00 0.00 41.38 5.73
269 270 3.738791 CGAAATGGTTTTCCTTTTTCCGG 59.261 43.478 0.00 0.00 44.05 5.14
270 271 4.364860 ACGAAATGGTTTTCCTTTTTCCG 58.635 39.130 0.00 0.00 44.05 4.30
271 272 5.597806 AGACGAAATGGTTTTCCTTTTTCC 58.402 37.500 0.00 0.00 44.05 3.13
272 273 6.270064 TGAGACGAAATGGTTTTCCTTTTTC 58.730 36.000 0.00 0.00 44.05 2.29
273 274 6.215495 TGAGACGAAATGGTTTTCCTTTTT 57.785 33.333 0.00 0.00 44.05 1.94
274 275 5.845391 TGAGACGAAATGGTTTTCCTTTT 57.155 34.783 0.00 0.00 45.81 2.27
275 276 5.359860 ACTTGAGACGAAATGGTTTTCCTTT 59.640 36.000 0.00 0.00 38.40 3.11
276 277 4.887655 ACTTGAGACGAAATGGTTTTCCTT 59.112 37.500 0.00 0.00 38.40 3.36
277 278 4.461198 ACTTGAGACGAAATGGTTTTCCT 58.539 39.130 0.00 0.00 38.40 3.36
278 279 4.830826 ACTTGAGACGAAATGGTTTTCC 57.169 40.909 0.00 0.00 38.40 3.13
279 280 6.899114 ACATACTTGAGACGAAATGGTTTTC 58.101 36.000 0.00 0.00 38.29 2.29
280 281 6.347402 CGACATACTTGAGACGAAATGGTTTT 60.347 38.462 0.00 0.00 0.00 2.43
281 282 5.120208 CGACATACTTGAGACGAAATGGTTT 59.880 40.000 0.00 0.00 0.00 3.27
282 283 4.625742 CGACATACTTGAGACGAAATGGTT 59.374 41.667 0.00 0.00 0.00 3.67
283 284 4.174009 CGACATACTTGAGACGAAATGGT 58.826 43.478 0.00 0.00 0.00 3.55
284 285 3.000322 GCGACATACTTGAGACGAAATGG 60.000 47.826 0.00 0.00 0.00 3.16
285 286 3.301197 CGCGACATACTTGAGACGAAATG 60.301 47.826 0.00 0.00 0.00 2.32
286 287 2.852413 CGCGACATACTTGAGACGAAAT 59.148 45.455 0.00 0.00 0.00 2.17
287 288 2.247637 CGCGACATACTTGAGACGAAA 58.752 47.619 0.00 0.00 0.00 3.46
288 289 1.891178 CGCGACATACTTGAGACGAA 58.109 50.000 0.00 0.00 0.00 3.85
289 290 0.522705 GCGCGACATACTTGAGACGA 60.523 55.000 12.10 0.00 0.00 4.20
290 291 1.472276 GGCGCGACATACTTGAGACG 61.472 60.000 12.10 0.00 0.00 4.18
291 292 1.146358 GGGCGCGACATACTTGAGAC 61.146 60.000 17.00 0.00 0.00 3.36
292 293 1.141019 GGGCGCGACATACTTGAGA 59.859 57.895 17.00 0.00 0.00 3.27
293 294 0.384309 TAGGGCGCGACATACTTGAG 59.616 55.000 17.00 0.00 0.00 3.02
294 295 0.101759 GTAGGGCGCGACATACTTGA 59.898 55.000 28.23 0.00 0.00 3.02
295 296 0.874607 GGTAGGGCGCGACATACTTG 60.875 60.000 32.75 0.00 0.00 3.16
296 297 1.440476 GGTAGGGCGCGACATACTT 59.560 57.895 32.75 7.04 0.00 2.24
297 298 2.842256 CGGTAGGGCGCGACATACT 61.842 63.158 32.75 15.40 0.00 2.12
298 299 2.354305 CGGTAGGGCGCGACATAC 60.354 66.667 27.70 27.70 0.00 2.39
299 300 3.598715 CCGGTAGGGCGCGACATA 61.599 66.667 17.00 8.94 0.00 2.29
302 303 3.355203 TTAACCGGTAGGGCGCGAC 62.355 63.158 12.10 6.99 43.47 5.19
303 304 3.067439 TTAACCGGTAGGGCGCGA 61.067 61.111 12.10 0.00 43.47 5.87
304 305 2.359570 ATCTTAACCGGTAGGGCGCG 62.360 60.000 8.00 0.00 43.47 6.86
305 306 0.878961 CATCTTAACCGGTAGGGCGC 60.879 60.000 8.00 0.00 43.47 6.53
306 307 0.878961 GCATCTTAACCGGTAGGGCG 60.879 60.000 8.00 0.00 43.47 6.13
307 308 0.468648 AGCATCTTAACCGGTAGGGC 59.531 55.000 8.00 10.50 43.47 5.19
308 309 4.124970 GTTAAGCATCTTAACCGGTAGGG 58.875 47.826 8.00 0.10 43.47 3.53
309 310 5.019785 AGTTAAGCATCTTAACCGGTAGG 57.980 43.478 8.00 0.53 45.13 3.18
310 311 5.749109 CAGAGTTAAGCATCTTAACCGGTAG 59.251 44.000 8.00 1.73 35.95 3.18
311 312 5.419788 TCAGAGTTAAGCATCTTAACCGGTA 59.580 40.000 8.00 0.00 35.95 4.02
312 313 4.222145 TCAGAGTTAAGCATCTTAACCGGT 59.778 41.667 19.83 0.00 35.95 5.28
313 314 4.755411 TCAGAGTTAAGCATCTTAACCGG 58.245 43.478 19.83 0.00 35.95 5.28
314 315 6.910536 ATTCAGAGTTAAGCATCTTAACCG 57.089 37.500 19.83 12.28 35.95 4.44
315 316 8.268850 TCAATTCAGAGTTAAGCATCTTAACC 57.731 34.615 19.83 13.79 35.95 2.85
316 317 9.766277 CTTCAATTCAGAGTTAAGCATCTTAAC 57.234 33.333 17.20 17.20 35.66 2.01
317 318 8.950210 CCTTCAATTCAGAGTTAAGCATCTTAA 58.050 33.333 0.00 0.00 0.00 1.85
318 319 8.103305 ACCTTCAATTCAGAGTTAAGCATCTTA 58.897 33.333 0.00 0.00 0.00 2.10
319 320 6.944862 ACCTTCAATTCAGAGTTAAGCATCTT 59.055 34.615 0.00 0.00 0.00 2.40
320 321 6.479884 ACCTTCAATTCAGAGTTAAGCATCT 58.520 36.000 0.00 0.00 0.00 2.90
321 322 6.749923 ACCTTCAATTCAGAGTTAAGCATC 57.250 37.500 0.00 0.00 0.00 3.91
322 323 9.905713 TTATACCTTCAATTCAGAGTTAAGCAT 57.094 29.630 0.00 0.00 0.00 3.79
323 324 9.162764 GTTATACCTTCAATTCAGAGTTAAGCA 57.837 33.333 0.00 0.00 0.00 3.91
324 325 9.162764 TGTTATACCTTCAATTCAGAGTTAAGC 57.837 33.333 0.00 0.00 0.00 3.09
327 328 9.871238 GAGTGTTATACCTTCAATTCAGAGTTA 57.129 33.333 0.00 0.00 0.00 2.24
328 329 8.598041 AGAGTGTTATACCTTCAATTCAGAGTT 58.402 33.333 0.00 0.00 0.00 3.01
329 330 8.140112 AGAGTGTTATACCTTCAATTCAGAGT 57.860 34.615 0.00 0.00 0.00 3.24
332 333 9.877178 ACTAAGAGTGTTATACCTTCAATTCAG 57.123 33.333 0.00 0.00 0.00 3.02
333 334 9.653287 CACTAAGAGTGTTATACCTTCAATTCA 57.347 33.333 0.00 0.00 41.19 2.57
391 392 1.470285 GCATAAACCAGTCGTAGCCGA 60.470 52.381 0.00 0.00 41.73 5.54
392 393 0.928229 GCATAAACCAGTCGTAGCCG 59.072 55.000 0.00 0.00 0.00 5.52
400 401 2.783135 CACCTCACTGCATAAACCAGT 58.217 47.619 0.00 0.00 43.92 4.00
416 417 2.664402 ACTTCAACATTCCTGCACCT 57.336 45.000 0.00 0.00 0.00 4.00
428 429 7.148641 TCTTCACAGTCTGATTCTACTTCAAC 58.851 38.462 6.91 0.00 0.00 3.18
529 530 2.496899 ATATTCGGGATGTCATGGGC 57.503 50.000 0.00 0.00 0.00 5.36
530 531 4.655963 AGAAATATTCGGGATGTCATGGG 58.344 43.478 0.00 0.00 34.02 4.00
533 534 6.322201 AGCAAAAGAAATATTCGGGATGTCAT 59.678 34.615 0.00 0.00 34.02 3.06
534 535 5.652014 AGCAAAAGAAATATTCGGGATGTCA 59.348 36.000 0.00 0.00 34.02 3.58
535 536 6.136541 AGCAAAAGAAATATTCGGGATGTC 57.863 37.500 0.00 0.00 34.02 3.06
536 537 5.652014 TGAGCAAAAGAAATATTCGGGATGT 59.348 36.000 0.00 0.00 34.02 3.06
537 538 6.135290 TGAGCAAAAGAAATATTCGGGATG 57.865 37.500 0.00 0.00 34.02 3.51
539 540 6.152661 ACAATGAGCAAAAGAAATATTCGGGA 59.847 34.615 0.00 0.00 34.02 5.14
540 541 6.332630 ACAATGAGCAAAAGAAATATTCGGG 58.667 36.000 0.00 0.00 34.02 5.14
560 562 3.070018 CTGTTTGCTTCTCTCGGACAAT 58.930 45.455 0.00 0.00 0.00 2.71
590 592 3.760580 AGCATCGCCTAGCTAGAAAAT 57.239 42.857 22.70 8.85 39.78 1.82
591 593 4.280929 TCATAGCATCGCCTAGCTAGAAAA 59.719 41.667 22.70 6.84 45.53 2.29
594 596 3.073274 TCATAGCATCGCCTAGCTAGA 57.927 47.619 22.70 2.71 45.53 2.43
747 749 5.010314 TCGCTCTGTTAACTTTCTACCTTCA 59.990 40.000 7.22 0.00 0.00 3.02
782 784 5.046520 AGGGATAATGGCTTCCGATTACTAC 60.047 44.000 0.00 0.00 32.48 2.73
786 788 3.907474 TCAGGGATAATGGCTTCCGATTA 59.093 43.478 0.00 0.00 32.48 1.75
824 826 3.042682 TCCAAGACCAGGTTGTCTAACA 58.957 45.455 0.00 0.00 44.68 2.41
835 837 1.550524 TGAATCCGAGTCCAAGACCAG 59.449 52.381 0.00 0.00 32.18 4.00
907 915 3.710722 AGAGAGGTGGCGGCAAGG 61.711 66.667 15.50 0.00 0.00 3.61
919 928 1.137825 GGACGCGGAAGACAGAGAG 59.862 63.158 12.47 0.00 0.00 3.20
929 940 0.179040 AAAGAAAACAGGGACGCGGA 60.179 50.000 12.47 0.00 0.00 5.54
1001 1014 1.059006 ATGGATGGAGGGAGGCTGAC 61.059 60.000 0.00 0.00 0.00 3.51
1089 1347 1.379443 ATAGACGACGGGAGCACCA 60.379 57.895 1.58 0.00 40.22 4.17
1248 2482 3.475774 CACGTACGTGCTTCGCCC 61.476 66.667 32.93 0.00 44.19 6.13
1257 2491 3.569049 GAGCAGGCACCACGTACGT 62.569 63.158 16.72 16.72 0.00 3.57
1426 3228 3.027170 CTGCGGCTTCGATTGCGTT 62.027 57.895 0.00 0.00 38.98 4.84
1517 3430 1.376037 GACGGGTGGCCTCTTCTTG 60.376 63.158 3.32 0.00 0.00 3.02
1570 3573 0.036010 CCATCTGCTCCACCTTTCGT 60.036 55.000 0.00 0.00 0.00 3.85
1592 3595 2.534019 CGCTGAACTGCACGGTGTT 61.534 57.895 10.24 0.00 0.00 3.32
1608 3611 2.427753 GATGGATCCAGGGGTCGC 59.572 66.667 21.33 0.00 0.00 5.19
1722 3900 5.582269 TGGATTTATATCGCTTGAGCATAGC 59.418 40.000 3.65 0.00 42.21 2.97
1762 4040 3.146847 GCCGGTTCCCCTAATTCTATTG 58.853 50.000 1.90 0.00 0.00 1.90
1763 4041 3.053826 AGCCGGTTCCCCTAATTCTATT 58.946 45.455 1.90 0.00 0.00 1.73
1765 4043 2.044758 GAGCCGGTTCCCCTAATTCTA 58.955 52.381 7.13 0.00 0.00 2.10
1772 4050 3.647771 GGTTGAGCCGGTTCCCCT 61.648 66.667 16.38 0.00 0.00 4.79
1795 4073 2.795291 TATATGAGACAGGCCACCCT 57.205 50.000 5.01 0.00 44.25 4.34
1909 4187 9.551734 TCTCTGTAGTTGTATACGTACACATAT 57.448 33.333 7.64 2.29 40.40 1.78
1968 4246 8.887264 ACTCTTCTAGATTCTTTAGGAAGTGA 57.113 34.615 17.13 4.13 37.36 3.41
2001 4279 1.961394 ACAGTTCGAGACTTGTAGGCA 59.039 47.619 0.00 0.00 36.10 4.75
2152 4430 4.974645 TCTGCTAATCCGGTATTCCATT 57.025 40.909 0.00 0.00 0.00 3.16
2185 4463 4.647611 TCTTTGGTGTGATAACATCGGTT 58.352 39.130 0.00 0.00 41.06 4.44
2232 4510 1.268079 GTCTTTGCTTCAGGAGTTGGC 59.732 52.381 0.00 0.00 0.00 4.52
2364 4642 2.436417 GGGCTATGCTGTGTTCTTTGA 58.564 47.619 0.00 0.00 0.00 2.69
2571 4850 5.127194 ACACGTCCTGATATCTCTTTTGCTA 59.873 40.000 3.98 0.00 0.00 3.49
2715 4994 3.443681 GGCTAGGATGCTTAAGTGCAAAA 59.556 43.478 4.02 0.00 46.61 2.44
2733 5012 1.153369 GATCTGTTGCAGCGGGCTA 60.153 57.895 9.71 0.00 45.15 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.