Multiple sequence alignment - TraesCS7A01G407200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G407200 chr7A 100.000 4979 0 0 1 4979 592910141 592905163 0.000000e+00 9195.0
1 TraesCS7A01G407200 chr7A 92.593 54 3 1 3 56 549354573 549354625 5.340000e-10 76.8
2 TraesCS7A01G407200 chr7D 91.461 3607 206 51 764 4330 517997249 517993705 0.000000e+00 4861.0
3 TraesCS7A01G407200 chr7D 87.056 479 43 12 82 545 517997934 517997460 1.590000e-144 523.0
4 TraesCS7A01G407200 chr7D 91.957 373 19 3 4561 4928 517993482 517993116 3.440000e-141 512.0
5 TraesCS7A01G407200 chr7D 89.239 381 27 2 36 403 517998716 517998337 9.760000e-127 464.0
6 TraesCS7A01G407200 chr7D 92.424 132 10 0 4379 4510 517993628 517993497 6.580000e-44 189.0
7 TraesCS7A01G407200 chr7D 97.368 38 1 0 631 668 517997311 517997274 1.160000e-06 65.8
8 TraesCS7A01G407200 chr7B 91.254 2401 140 31 1972 4331 550874975 550872604 0.000000e+00 3206.0
9 TraesCS7A01G407200 chr7B 91.230 1049 51 18 931 1972 550876071 550875057 0.000000e+00 1389.0
10 TraesCS7A01G407200 chr7B 86.857 175 15 4 4559 4733 550872387 550872221 6.580000e-44 189.0
11 TraesCS7A01G407200 chr7B 91.667 132 10 1 4379 4510 550872527 550872397 1.100000e-41 182.0
12 TraesCS7A01G407200 chr7B 89.706 136 1 5 767 902 550876274 550876152 1.430000e-35 161.0
13 TraesCS7A01G407200 chr7B 94.595 37 2 0 914 950 550876110 550876074 1.940000e-04 58.4
14 TraesCS7A01G407200 chr5A 96.491 57 1 1 4502 4558 708314616 708314671 5.310000e-15 93.5
15 TraesCS7A01G407200 chr5A 90.741 54 3 2 4505 4557 215147011 215146959 2.490000e-08 71.3
16 TraesCS7A01G407200 chr5D 97.778 45 1 0 2 46 62140672 62140628 1.490000e-10 78.7
17 TraesCS7A01G407200 chr5D 92.308 52 4 0 4501 4552 326114744 326114693 1.920000e-09 75.0
18 TraesCS7A01G407200 chr5D 92.308 52 3 1 4506 4557 278271029 278271079 6.910000e-09 73.1
19 TraesCS7A01G407200 chr5B 100.000 42 0 0 3 44 159094278 159094237 1.490000e-10 78.7
20 TraesCS7A01G407200 chr5B 86.364 66 6 3 4488 4552 470992256 470992319 8.940000e-08 69.4
21 TraesCS7A01G407200 chr3B 97.727 44 1 0 1 44 42629588 42629631 5.340000e-10 76.8
22 TraesCS7A01G407200 chr3B 92.453 53 3 1 4505 4557 62673185 62673236 1.920000e-09 75.0
23 TraesCS7A01G407200 chr2A 97.727 44 1 0 1 44 693209929 693209886 5.340000e-10 76.8
24 TraesCS7A01G407200 chr2A 85.507 69 4 5 4488 4552 535802026 535802092 3.220000e-07 67.6
25 TraesCS7A01G407200 chr1A 97.727 44 1 0 1 44 517414874 517414917 5.340000e-10 76.8
26 TraesCS7A01G407200 chr6A 89.655 58 5 1 3 60 127215366 127215422 6.910000e-09 73.1
27 TraesCS7A01G407200 chr2B 91.071 56 2 2 3 56 24866220 24866274 6.910000e-09 73.1
28 TraesCS7A01G407200 chr2B 89.286 56 5 1 4498 4552 653585450 653585395 8.940000e-08 69.4
29 TraesCS7A01G407200 chr3D 90.566 53 5 0 1 53 84248347 84248399 2.490000e-08 71.3
30 TraesCS7A01G407200 chr6B 85.294 68 5 4 4486 4552 116281081 116281144 1.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G407200 chr7A 592905163 592910141 4978 True 9195.000000 9195 100.000000 1 4979 1 chr7A.!!$R1 4978
1 TraesCS7A01G407200 chr7D 517993116 517998716 5600 True 1102.466667 4861 91.584167 36 4928 6 chr7D.!!$R1 4892
2 TraesCS7A01G407200 chr7B 550872221 550876274 4053 True 864.233333 3206 90.884833 767 4733 6 chr7B.!!$R1 3966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 1840 0.037232 GTCTCCGGTCCAAGTTCCAG 60.037 60.0 0.0 0.0 0.00 3.86 F
1962 2849 0.179034 CCTGCCCTCCTTGCATCTAC 60.179 60.0 0.0 0.0 38.22 2.59 F
2736 3716 0.036732 ATGAAAGCAGAGCCAACGGA 59.963 50.0 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2723 3703 1.131315 GATTTCTTCCGTTGGCTCTGC 59.869 52.381 0.00 0.0 0.00 4.26 R
3310 4298 0.317160 GCTGTTTTGGGGGTTGCTAC 59.683 55.000 0.00 0.0 0.00 3.58 R
4366 5441 0.045469 AGAATTCCTCCAGGCTCCCT 59.955 55.000 0.65 0.0 34.44 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
28 29 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
29 30 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
30 31 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
31 32 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
32 33 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
33 34 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
34 35 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
43 44 3.839490 TGGAACGGAGGGAGTACAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
82 83 4.875536 AGCACATCATTTACATGCGAGTTA 59.124 37.500 0.00 0.00 41.23 2.24
130 131 7.630242 TCTTGATAGTGGAATTTGGTCAATC 57.370 36.000 0.00 0.00 0.00 2.67
132 133 8.548025 TCTTGATAGTGGAATTTGGTCAATCTA 58.452 33.333 0.00 0.00 0.00 1.98
135 136 8.548025 TGATAGTGGAATTTGGTCAATCTAGAA 58.452 33.333 0.00 0.00 0.00 2.10
140 141 5.163754 GGAATTTGGTCAATCTAGAACCACG 60.164 44.000 13.31 0.00 0.00 4.94
142 143 3.313012 TGGTCAATCTAGAACCACGTG 57.687 47.619 9.08 9.08 0.00 4.49
145 146 3.118738 GGTCAATCTAGAACCACGTGGAT 60.119 47.826 40.21 30.11 38.94 3.41
147 148 5.282510 GTCAATCTAGAACCACGTGGATAG 58.717 45.833 40.21 31.65 38.94 2.08
161 162 7.145323 CCACGTGGATAGAAAAGAAAAACATT 58.855 34.615 31.31 0.00 37.39 2.71
167 168 9.965824 TGGATAGAAAAGAAAAACATTCAAGAC 57.034 29.630 0.00 0.00 0.00 3.01
187 188 7.557719 TCAAGACTCTTTTCCAAGACTTTCAAT 59.442 33.333 0.00 0.00 33.80 2.57
243 244 4.065110 GGAGCTTGTCCACACACC 57.935 61.111 0.00 0.00 46.10 4.16
273 274 4.213906 TGTCGTCGTCATTACTCTACAACA 59.786 41.667 0.00 0.00 0.00 3.33
282 283 7.644551 CGTCATTACTCTACAACAGATAAGGAC 59.355 40.741 0.00 0.00 36.31 3.85
293 294 3.201290 CAGATAAGGACATGCAGTGACC 58.799 50.000 0.00 1.03 42.12 4.02
297 298 2.846371 GGACATGCAGTGACCTGTC 58.154 57.895 7.23 7.23 41.02 3.51
314 328 6.148811 TGACCTGTCGAGAATTGTAATTTTCC 59.851 38.462 0.00 0.00 0.00 3.13
330 344 2.861462 TTCCTGGAAAGTTTTGTGCG 57.139 45.000 6.68 0.00 0.00 5.34
383 397 1.847818 TTCTCACACCGTGACTTTCG 58.152 50.000 5.28 0.00 37.67 3.46
388 402 3.571571 TCACACCGTGACTTTCGAATAG 58.428 45.455 5.28 2.23 37.67 1.73
425 1177 5.788055 TTTTATCGCACATTACACGTGAT 57.212 34.783 25.01 9.25 36.43 3.06
427 1179 2.073117 TCGCACATTACACGTGATGT 57.927 45.000 25.01 19.20 46.06 3.06
431 1183 3.366724 CGCACATTACACGTGATGTAGTT 59.633 43.478 25.01 0.00 44.68 2.24
443 1195 9.090692 ACACGTGATGTAGTTGGTTATAATAAC 57.909 33.333 25.01 7.22 40.88 1.89
484 1236 7.315142 TCTTCATTGGATCACATGTTTTTAGC 58.685 34.615 0.00 0.00 0.00 3.09
485 1237 5.964758 TCATTGGATCACATGTTTTTAGCC 58.035 37.500 0.00 0.00 0.00 3.93
498 1250 7.985752 ACATGTTTTTAGCCACTATACTCTACC 59.014 37.037 0.00 0.00 0.00 3.18
507 1259 6.841755 AGCCACTATACTCTACCAATTCTTCT 59.158 38.462 0.00 0.00 0.00 2.85
569 1321 9.603189 ACTACTAGTAGATATGGCATTTTAGGT 57.397 33.333 31.93 5.43 36.97 3.08
572 1324 8.532819 ACTAGTAGATATGGCATTTTAGGTAGC 58.467 37.037 4.78 0.00 0.00 3.58
585 1337 3.834732 GGTAGCCACCACAGTACTG 57.165 57.895 21.44 21.44 45.04 2.74
586 1338 1.263356 GGTAGCCACCACAGTACTGA 58.737 55.000 29.30 0.83 45.04 3.41
587 1339 1.621814 GGTAGCCACCACAGTACTGAA 59.378 52.381 29.30 1.51 45.04 3.02
588 1340 2.612221 GGTAGCCACCACAGTACTGAAC 60.612 54.545 29.30 10.86 45.04 3.18
589 1341 1.424638 AGCCACCACAGTACTGAACT 58.575 50.000 29.30 12.77 39.81 3.01
602 1428 5.794894 AGTACTGAACTGAGGTTGGTATTG 58.205 41.667 0.00 0.00 36.93 1.90
603 1429 3.412386 ACTGAACTGAGGTTGGTATTGC 58.588 45.455 0.00 0.00 35.58 3.56
619 1445 4.156739 GGTATTGCCAAGTCTTTGAGAAGG 59.843 45.833 0.00 0.00 36.36 3.46
620 1446 1.609208 TGCCAAGTCTTTGAGAAGGC 58.391 50.000 0.00 0.00 38.58 4.35
621 1447 1.133823 TGCCAAGTCTTTGAGAAGGCA 60.134 47.619 7.74 7.74 42.66 4.75
622 1448 1.956477 GCCAAGTCTTTGAGAAGGCAA 59.044 47.619 4.84 0.00 40.00 4.52
623 1449 2.362077 GCCAAGTCTTTGAGAAGGCAAA 59.638 45.455 4.84 0.00 40.00 3.68
624 1450 3.181476 GCCAAGTCTTTGAGAAGGCAAAA 60.181 43.478 4.84 0.00 40.00 2.44
625 1451 4.502087 GCCAAGTCTTTGAGAAGGCAAAAT 60.502 41.667 4.84 0.00 40.00 1.82
626 1452 5.225642 CCAAGTCTTTGAGAAGGCAAAATC 58.774 41.667 0.00 0.00 40.00 2.17
627 1453 5.225642 CAAGTCTTTGAGAAGGCAAAATCC 58.774 41.667 0.00 0.00 40.00 3.01
628 1454 4.473444 AGTCTTTGAGAAGGCAAAATCCA 58.527 39.130 0.00 0.00 40.00 3.41
629 1455 5.082425 AGTCTTTGAGAAGGCAAAATCCAT 58.918 37.500 0.00 0.00 40.00 3.41
664 1490 4.456911 AGATCACACATTCACACATCAACC 59.543 41.667 0.00 0.00 0.00 3.77
668 1494 2.229543 CACATTCACACATCAACCAGGG 59.770 50.000 0.00 0.00 0.00 4.45
669 1495 1.203052 CATTCACACATCAACCAGGGC 59.797 52.381 0.00 0.00 0.00 5.19
670 1496 0.184692 TTCACACATCAACCAGGGCA 59.815 50.000 0.00 0.00 0.00 5.36
671 1497 0.250858 TCACACATCAACCAGGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
672 1498 0.538057 CACACATCAACCAGGGCAGT 60.538 55.000 0.00 0.00 0.00 4.40
673 1499 0.185901 ACACATCAACCAGGGCAGTT 59.814 50.000 0.00 0.00 0.00 3.16
674 1500 0.599558 CACATCAACCAGGGCAGTTG 59.400 55.000 7.69 7.69 44.80 3.16
675 1501 0.540365 ACATCAACCAGGGCAGTTGG 60.540 55.000 12.45 7.27 43.83 3.77
679 1505 2.776526 ACCAGGGCAGTTGGTCCA 60.777 61.111 2.18 0.00 45.67 4.02
680 1506 2.282462 CCAGGGCAGTTGGTCCAC 60.282 66.667 0.00 0.00 46.80 4.02
681 1507 2.282462 CAGGGCAGTTGGTCCACC 60.282 66.667 0.00 0.00 46.80 4.61
682 1508 3.953775 AGGGCAGTTGGTCCACCG 61.954 66.667 0.00 0.00 46.80 4.94
683 1509 4.265056 GGGCAGTTGGTCCACCGT 62.265 66.667 0.00 0.00 42.53 4.83
684 1510 2.745037 GGCAGTTGGTCCACCGTA 59.255 61.111 0.00 0.00 39.43 4.02
685 1511 1.071814 GGCAGTTGGTCCACCGTAA 59.928 57.895 0.00 0.00 39.43 3.18
686 1512 0.953960 GGCAGTTGGTCCACCGTAAG 60.954 60.000 0.00 0.00 39.43 2.34
700 1526 2.586258 CGTAAGGTCAGATGAGGTGG 57.414 55.000 0.00 0.00 0.00 4.61
701 1527 1.825474 CGTAAGGTCAGATGAGGTGGT 59.175 52.381 0.00 0.00 0.00 4.16
702 1528 2.233922 CGTAAGGTCAGATGAGGTGGTT 59.766 50.000 0.00 0.00 0.00 3.67
703 1529 3.676324 CGTAAGGTCAGATGAGGTGGTTC 60.676 52.174 0.00 0.00 0.00 3.62
704 1530 1.280457 AGGTCAGATGAGGTGGTTCC 58.720 55.000 0.00 0.00 0.00 3.62
717 1543 5.854010 AGGTGGTTCCTTTTCTTTTCTTC 57.146 39.130 0.00 0.00 45.67 2.87
718 1544 5.519808 AGGTGGTTCCTTTTCTTTTCTTCT 58.480 37.500 0.00 0.00 45.67 2.85
719 1545 5.958380 AGGTGGTTCCTTTTCTTTTCTTCTT 59.042 36.000 0.00 0.00 45.67 2.52
720 1546 6.042777 GGTGGTTCCTTTTCTTTTCTTCTTG 58.957 40.000 0.00 0.00 0.00 3.02
721 1547 6.351033 GGTGGTTCCTTTTCTTTTCTTCTTGT 60.351 38.462 0.00 0.00 0.00 3.16
722 1548 7.097192 GTGGTTCCTTTTCTTTTCTTCTTGTT 58.903 34.615 0.00 0.00 0.00 2.83
723 1549 7.602644 GTGGTTCCTTTTCTTTTCTTCTTGTTT 59.397 33.333 0.00 0.00 0.00 2.83
724 1550 8.154203 TGGTTCCTTTTCTTTTCTTCTTGTTTT 58.846 29.630 0.00 0.00 0.00 2.43
725 1551 8.443160 GGTTCCTTTTCTTTTCTTCTTGTTTTG 58.557 33.333 0.00 0.00 0.00 2.44
726 1552 8.988934 GTTCCTTTTCTTTTCTTCTTGTTTTGT 58.011 29.630 0.00 0.00 0.00 2.83
728 1554 9.855021 TCCTTTTCTTTTCTTCTTGTTTTGTAG 57.145 29.630 0.00 0.00 0.00 2.74
729 1555 8.595533 CCTTTTCTTTTCTTCTTGTTTTGTAGC 58.404 33.333 0.00 0.00 0.00 3.58
730 1556 8.474006 TTTTCTTTTCTTCTTGTTTTGTAGCC 57.526 30.769 0.00 0.00 0.00 3.93
731 1557 6.767524 TCTTTTCTTCTTGTTTTGTAGCCA 57.232 33.333 0.00 0.00 0.00 4.75
732 1558 7.164230 TCTTTTCTTCTTGTTTTGTAGCCAA 57.836 32.000 0.00 0.00 0.00 4.52
733 1559 7.257722 TCTTTTCTTCTTGTTTTGTAGCCAAG 58.742 34.615 0.00 0.00 37.51 3.61
734 1560 4.568152 TCTTCTTGTTTTGTAGCCAAGC 57.432 40.909 0.00 0.00 36.41 4.01
735 1561 4.207165 TCTTCTTGTTTTGTAGCCAAGCT 58.793 39.130 0.00 0.00 43.41 3.74
736 1562 4.644685 TCTTCTTGTTTTGTAGCCAAGCTT 59.355 37.500 0.00 0.00 40.44 3.74
737 1563 4.305989 TCTTGTTTTGTAGCCAAGCTTG 57.694 40.909 19.93 19.93 40.44 4.01
738 1564 3.951037 TCTTGTTTTGTAGCCAAGCTTGA 59.049 39.130 28.05 4.99 40.44 3.02
739 1565 3.708563 TGTTTTGTAGCCAAGCTTGAC 57.291 42.857 28.05 17.07 40.44 3.18
740 1566 3.020274 TGTTTTGTAGCCAAGCTTGACA 58.980 40.909 28.05 20.17 40.44 3.58
741 1567 3.066621 TGTTTTGTAGCCAAGCTTGACAG 59.933 43.478 28.05 12.24 40.44 3.51
742 1568 2.638480 TTGTAGCCAAGCTTGACAGT 57.362 45.000 28.05 11.00 40.44 3.55
743 1569 1.882912 TGTAGCCAAGCTTGACAGTG 58.117 50.000 28.05 11.48 40.44 3.66
744 1570 1.160137 GTAGCCAAGCTTGACAGTGG 58.840 55.000 28.05 11.92 40.44 4.00
764 1590 4.633175 TGGTAACACGATGACAAAGCTAA 58.367 39.130 0.00 0.00 46.17 3.09
765 1591 4.688879 TGGTAACACGATGACAAAGCTAAG 59.311 41.667 0.00 0.00 46.17 2.18
778 1609 6.974622 TGACAAAGCTAAGCAGAAAAGAAAAG 59.025 34.615 0.00 0.00 0.00 2.27
785 1616 5.876651 AAGCAGAAAAGAAAAGGGAACAT 57.123 34.783 0.00 0.00 0.00 2.71
786 1617 5.459536 AGCAGAAAAGAAAAGGGAACATC 57.540 39.130 0.00 0.00 0.00 3.06
800 1631 0.452287 AACATCACGACGACGACGAG 60.452 55.000 25.15 17.62 42.66 4.18
808 1639 0.179194 GACGACGACGAGGAAGAAGG 60.179 60.000 15.32 0.00 42.66 3.46
811 1642 0.179158 GACGACGAGGAAGAAGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
816 1647 0.898320 CGAGGAAGAAGGAGCAGGAA 59.102 55.000 0.00 0.00 0.00 3.36
818 1649 0.988063 AGGAAGAAGGAGCAGGAACC 59.012 55.000 0.00 0.00 0.00 3.62
820 1651 0.391793 GAAGAAGGAGCAGGAACCGG 60.392 60.000 0.00 0.00 0.00 5.28
822 1653 2.203938 AAGGAGCAGGAACCGGGA 60.204 61.111 6.32 0.00 0.00 5.14
902 1733 2.042230 GACCCCTTCGGCCTCCTA 60.042 66.667 0.00 0.00 33.26 2.94
903 1734 1.688187 GACCCCTTCGGCCTCCTAA 60.688 63.158 0.00 0.00 33.26 2.69
907 1738 1.054406 CCCTTCGGCCTCCTAATCCA 61.054 60.000 0.00 0.00 0.00 3.41
912 1773 2.461739 GGCCTCCTAATCCACCCCC 61.462 68.421 0.00 0.00 0.00 5.40
956 1840 0.037232 GTCTCCGGTCCAAGTTCCAG 60.037 60.000 0.00 0.00 0.00 3.86
976 1860 0.318955 CACAAAAGGAAGCCAAGCCG 60.319 55.000 0.00 0.00 0.00 5.52
1021 1905 3.053896 CGGTTCCGGCCTCAAACC 61.054 66.667 16.73 16.73 39.25 3.27
1032 1916 0.679960 CCTCAAACCCCGCCCTTTAG 60.680 60.000 0.00 0.00 0.00 1.85
1037 1921 2.686405 CAAACCCCGCCCTTTAGATTAC 59.314 50.000 0.00 0.00 0.00 1.89
1055 1939 3.121030 CTGCGGCGTCTTCTTGGG 61.121 66.667 9.37 0.00 0.00 4.12
1081 1965 2.159184 CGTCAAGAATCCTGCTGCTCTA 60.159 50.000 0.00 0.00 0.00 2.43
1082 1966 3.456280 GTCAAGAATCCTGCTGCTCTAG 58.544 50.000 0.00 0.00 0.00 2.43
1092 1976 4.815108 TGCTCTAGCGGAGGCGGA 62.815 66.667 10.77 0.00 46.35 5.54
1093 1977 3.972276 GCTCTAGCGGAGGCGGAG 61.972 72.222 10.77 7.40 46.35 4.63
1094 1978 3.291383 CTCTAGCGGAGGCGGAGG 61.291 72.222 2.46 0.00 46.35 4.30
1095 1979 3.776347 CTCTAGCGGAGGCGGAGGA 62.776 68.421 2.46 0.00 46.35 3.71
1122 2006 2.347490 CGGAGGAGGTTGTGGGTG 59.653 66.667 0.00 0.00 0.00 4.61
1125 2009 3.569200 GAGGAGGTTGTGGGTGGGC 62.569 68.421 0.00 0.00 0.00 5.36
1549 2433 4.964241 GGCGGCCTCCCCCTCTAT 62.964 72.222 12.87 0.00 0.00 1.98
1571 2455 1.515521 CTTCCGTGAGCAACCAACCC 61.516 60.000 0.00 0.00 0.00 4.11
1575 2459 1.456287 GTGAGCAACCAACCCCTCT 59.544 57.895 0.00 0.00 0.00 3.69
1579 2463 0.474660 AGCAACCAACCCCTCTCTCT 60.475 55.000 0.00 0.00 0.00 3.10
1582 2466 0.547954 AACCAACCCCTCTCTCTCCC 60.548 60.000 0.00 0.00 0.00 4.30
1588 2472 1.232792 CCCTCTCTCTCCCTCCCTG 59.767 68.421 0.00 0.00 0.00 4.45
1592 2476 1.454847 CTCTCTCCCTCCCTGTCCG 60.455 68.421 0.00 0.00 0.00 4.79
1609 2493 4.266714 TGTCCGTCCCCAAATTCTTAATC 58.733 43.478 0.00 0.00 0.00 1.75
1650 2534 8.982091 AGAAGCAGTACTGTTCATATCTAGTA 57.018 34.615 26.08 0.00 0.00 1.82
1651 2535 9.062524 AGAAGCAGTACTGTTCATATCTAGTAG 57.937 37.037 26.08 0.00 0.00 2.57
1652 2536 7.753309 AGCAGTACTGTTCATATCTAGTAGG 57.247 40.000 23.44 0.00 0.00 3.18
1653 2537 7.519057 AGCAGTACTGTTCATATCTAGTAGGA 58.481 38.462 23.44 0.00 0.00 2.94
1654 2538 7.663905 AGCAGTACTGTTCATATCTAGTAGGAG 59.336 40.741 23.44 0.00 0.00 3.69
1655 2539 7.446013 GCAGTACTGTTCATATCTAGTAGGAGT 59.554 40.741 23.44 0.00 0.00 3.85
1656 2540 9.999660 CAGTACTGTTCATATCTAGTAGGAGTA 57.000 37.037 15.06 0.00 0.00 2.59
1947 2834 0.670162 TTTGCTTCACTTGCTCCTGC 59.330 50.000 0.00 0.00 40.20 4.85
1962 2849 0.179034 CCTGCCCTCCTTGCATCTAC 60.179 60.000 0.00 0.00 38.22 2.59
1963 2850 0.531532 CTGCCCTCCTTGCATCTACG 60.532 60.000 0.00 0.00 38.22 3.51
1977 2951 4.142249 TGCATCTACGTATGTGCTAGTTGT 60.142 41.667 24.00 0.00 38.37 3.32
1988 2962 3.255888 TGTGCTAGTTGTCATCTCGAGTT 59.744 43.478 13.13 0.15 0.00 3.01
1996 2970 2.232208 TGTCATCTCGAGTTGATGCACT 59.768 45.455 24.84 0.00 40.59 4.40
1998 2972 3.305629 GTCATCTCGAGTTGATGCACTTC 59.694 47.826 24.84 9.97 40.59 3.01
1999 2973 1.982612 TCTCGAGTTGATGCACTTCG 58.017 50.000 13.13 0.00 0.00 3.79
2015 2989 2.301870 ACTTCGGTGCTCAGAATTACCA 59.698 45.455 1.87 0.00 32.75 3.25
2018 2992 2.499693 TCGGTGCTCAGAATTACCATGA 59.500 45.455 0.00 0.00 32.75 3.07
2133 3107 2.315925 ATGTGGAGAGCATTGTACCG 57.684 50.000 0.00 0.00 0.00 4.02
2134 3108 0.973632 TGTGGAGAGCATTGTACCGT 59.026 50.000 0.00 0.00 0.00 4.83
2283 3258 1.068127 GATCAGTGGGATTGCAATGGC 59.932 52.381 18.59 2.76 36.00 4.40
2305 3280 9.910267 ATGGCATGCTGAATTATAATGTCTATA 57.090 29.630 18.92 0.00 0.00 1.31
2398 3373 6.007936 TCTGTTTAATCGTCACATTTTGGG 57.992 37.500 0.00 0.00 0.00 4.12
2399 3374 5.048364 TCTGTTTAATCGTCACATTTTGGGG 60.048 40.000 0.00 0.00 0.00 4.96
2400 3375 3.859411 TTAATCGTCACATTTTGGGGC 57.141 42.857 0.00 0.00 0.00 5.80
2420 3395 5.458015 GGGCTTTATTGTTGTAACTGACAC 58.542 41.667 0.00 0.00 37.96 3.67
2576 3551 1.589716 CCTACAAGCAAGCCAGGTGC 61.590 60.000 0.00 0.00 42.55 5.01
2588 3563 1.197036 GCCAGGTGCGTTCTTTTAGTC 59.803 52.381 0.00 0.00 0.00 2.59
2604 3579 0.610687 AGTCACCTGAACCTGCTAGC 59.389 55.000 8.10 8.10 0.00 3.42
2605 3580 0.321671 GTCACCTGAACCTGCTAGCA 59.678 55.000 18.22 18.22 0.00 3.49
2647 3626 2.557056 GAGGCTTTGGTTTAAGGTCCAC 59.443 50.000 0.00 0.00 33.12 4.02
2723 3703 2.800250 AGGGAAAGGCTGTCATGAAAG 58.200 47.619 8.69 8.69 0.00 2.62
2734 3714 1.135859 GTCATGAAAGCAGAGCCAACG 60.136 52.381 0.00 0.00 0.00 4.10
2736 3716 0.036732 ATGAAAGCAGAGCCAACGGA 59.963 50.000 0.00 0.00 0.00 4.69
2832 3812 5.007136 GCAACAGATAGAGACAAGGTAATGC 59.993 44.000 0.00 0.00 0.00 3.56
2833 3813 5.939764 ACAGATAGAGACAAGGTAATGCA 57.060 39.130 0.00 0.00 0.00 3.96
2912 3893 9.890629 TTGAAGTTATCTTACTAGTACTCCGTA 57.109 33.333 0.91 0.00 33.64 4.02
2947 3928 3.429410 GCCATGGTTTCCTAGTTGCATTC 60.429 47.826 14.67 0.00 0.00 2.67
2997 3978 6.849151 AGTTCACCCTTTAGTTTGAATACCT 58.151 36.000 0.00 0.00 30.96 3.08
3023 4004 5.986741 GTGGGTTAAAATTTGGTGGTTGTAG 59.013 40.000 0.00 0.00 0.00 2.74
3137 4118 9.973661 TCTTGTTATGAATCCAGATTTCCTTTA 57.026 29.630 0.00 0.00 0.00 1.85
3263 4251 4.654091 TTTCTTTGGTCCAGCTTTGAAG 57.346 40.909 0.00 0.00 0.00 3.02
3310 4298 5.096169 AGTCGATCGTCTGTATCTTTTGTG 58.904 41.667 15.94 0.00 0.00 3.33
3328 4317 1.339929 GTGTAGCAACCCCCAAAACAG 59.660 52.381 0.00 0.00 0.00 3.16
3343 4332 5.049828 CCAAAACAGCCCTACTTTTCTTTG 58.950 41.667 0.00 0.00 0.00 2.77
3429 4419 8.839343 CATAGTTAGGCATGAAAACATACATCA 58.161 33.333 0.00 0.00 0.00 3.07
3433 4423 6.594788 AGGCATGAAAACATACATCAAAGT 57.405 33.333 0.00 0.00 0.00 2.66
3434 4424 6.392354 AGGCATGAAAACATACATCAAAGTG 58.608 36.000 0.00 0.00 0.00 3.16
3435 4425 5.062558 GGCATGAAAACATACATCAAAGTGC 59.937 40.000 0.00 0.00 0.00 4.40
3483 4473 7.854422 TCTCAACGACTATAAACATTAGTAGCG 59.146 37.037 0.00 0.00 30.15 4.26
3506 4496 3.897141 TGCATCGTGGTAGTTGGATAA 57.103 42.857 0.00 0.00 0.00 1.75
3610 4601 3.788227 TGCATGTAGGGACAAACTTCT 57.212 42.857 0.00 0.00 39.59 2.85
3701 4692 7.398746 TGTTTTATTATCTGCTTCGATCAACG 58.601 34.615 0.00 0.00 44.09 4.10
3718 4710 0.176219 ACGTTTGGTTGAGACGTCCA 59.824 50.000 13.01 7.31 45.82 4.02
3741 4734 1.056660 TTTGGTGACACCTCCTCCTC 58.943 55.000 24.81 0.00 42.67 3.71
3742 4735 0.836400 TTGGTGACACCTCCTCCTCC 60.836 60.000 24.81 0.00 42.67 4.30
3743 4736 1.079438 GGTGACACCTCCTCCTCCT 59.921 63.158 17.84 0.00 34.73 3.69
3763 4756 0.674581 TTCATGCTTCCAGGCTGTCG 60.675 55.000 14.43 0.00 0.00 4.35
3801 4794 5.291371 CGAGATGAATAGATGATGATGGTGC 59.709 44.000 0.00 0.00 0.00 5.01
3828 4821 0.230769 GTGATGCTCGCGACATTAGC 59.769 55.000 20.02 15.71 36.77 3.09
3934 4927 5.064198 TGCCTGCGTGTATATTTTTCTACAC 59.936 40.000 3.37 3.37 42.66 2.90
3940 4933 7.225145 TGCGTGTATATTTTTCTACACCCATAC 59.775 37.037 7.13 0.00 42.98 2.39
4151 5168 0.965363 ATCAATTTTGGGCCGTCGCT 60.965 50.000 0.00 0.00 34.44 4.93
4162 5179 4.736631 CGTCGCTGTCGTCGCTGA 62.737 66.667 0.00 0.00 39.87 4.26
4193 5210 1.451936 GAGGGGCGGCTCATTATGT 59.548 57.895 13.05 0.00 0.00 2.29
4249 5268 0.112412 TCTTCCTGGTTGGGAAAGCC 59.888 55.000 0.00 0.00 43.74 4.35
4270 5289 2.032634 TTGCGCCAATGGAGTCGTC 61.033 57.895 2.05 0.00 0.00 4.20
4285 5304 0.243907 TCGTCTTCGCTTCTGGAAGG 59.756 55.000 11.61 3.32 40.95 3.46
4293 5316 0.807496 GCTTCTGGAAGGTGTCATGC 59.193 55.000 11.61 0.00 38.80 4.06
4351 5426 1.552337 GTCCTGGCACTGAGATGAGAA 59.448 52.381 0.00 0.00 0.00 2.87
4352 5427 2.027745 GTCCTGGCACTGAGATGAGAAA 60.028 50.000 0.00 0.00 0.00 2.52
4353 5428 2.639347 TCCTGGCACTGAGATGAGAAAA 59.361 45.455 0.00 0.00 0.00 2.29
4355 5430 4.015084 CCTGGCACTGAGATGAGAAAATT 58.985 43.478 0.00 0.00 0.00 1.82
4356 5431 4.142447 CCTGGCACTGAGATGAGAAAATTG 60.142 45.833 0.00 0.00 0.00 2.32
4357 5432 3.760151 TGGCACTGAGATGAGAAAATTGG 59.240 43.478 0.00 0.00 0.00 3.16
4358 5433 3.760684 GGCACTGAGATGAGAAAATTGGT 59.239 43.478 0.00 0.00 0.00 3.67
4359 5434 4.380233 GGCACTGAGATGAGAAAATTGGTG 60.380 45.833 0.00 0.00 0.00 4.17
4360 5435 4.380233 GCACTGAGATGAGAAAATTGGTGG 60.380 45.833 0.00 0.00 0.00 4.61
4361 5436 4.157289 CACTGAGATGAGAAAATTGGTGGG 59.843 45.833 0.00 0.00 0.00 4.61
4362 5437 3.698040 CTGAGATGAGAAAATTGGTGGGG 59.302 47.826 0.00 0.00 0.00 4.96
4363 5438 3.075882 TGAGATGAGAAAATTGGTGGGGT 59.924 43.478 0.00 0.00 0.00 4.95
4364 5439 3.434309 AGATGAGAAAATTGGTGGGGTG 58.566 45.455 0.00 0.00 0.00 4.61
4365 5440 1.337118 TGAGAAAATTGGTGGGGTGC 58.663 50.000 0.00 0.00 0.00 5.01
4366 5441 1.337118 GAGAAAATTGGTGGGGTGCA 58.663 50.000 0.00 0.00 0.00 4.57
4367 5442 1.273327 GAGAAAATTGGTGGGGTGCAG 59.727 52.381 0.00 0.00 0.00 4.41
4368 5443 0.321346 GAAAATTGGTGGGGTGCAGG 59.679 55.000 0.00 0.00 0.00 4.85
4369 5444 1.126948 AAAATTGGTGGGGTGCAGGG 61.127 55.000 0.00 0.00 0.00 4.45
4370 5445 2.029892 AAATTGGTGGGGTGCAGGGA 62.030 55.000 0.00 0.00 0.00 4.20
4371 5446 2.445492 AATTGGTGGGGTGCAGGGAG 62.445 60.000 0.00 0.00 0.00 4.30
4393 5468 0.250234 TGGAGGAATTCTGAGGCGTG 59.750 55.000 5.23 0.00 0.00 5.34
4443 5518 4.546570 CTCCCGTTTCTTTTGATTTGACC 58.453 43.478 0.00 0.00 0.00 4.02
4452 5527 5.123227 TCTTTTGATTTGACCGTGAAGAGT 58.877 37.500 0.00 0.00 0.00 3.24
4462 5537 2.808543 ACCGTGAAGAGTTTCTTGATGC 59.191 45.455 0.00 0.00 36.73 3.91
4485 5560 1.667212 GCGTTGCTGATGATGTGATCA 59.333 47.619 0.00 0.00 44.55 2.92
4487 5562 2.674357 CGTTGCTGATGATGTGATCACA 59.326 45.455 29.67 29.67 43.01 3.58
4507 5582 6.976088 TCACATGTTCGTTTATGGTTCATTT 58.024 32.000 0.00 0.00 0.00 2.32
4510 5585 7.805542 CACATGTTCGTTTATGGTTCATTTACA 59.194 33.333 0.00 0.00 0.00 2.41
4512 5587 8.797215 CATGTTCGTTTATGGTTCATTTACATG 58.203 33.333 0.00 0.00 34.21 3.21
4513 5588 7.877003 TGTTCGTTTATGGTTCATTTACATGT 58.123 30.769 2.69 2.69 0.00 3.21
4514 5589 9.000486 TGTTCGTTTATGGTTCATTTACATGTA 58.000 29.630 0.08 0.08 0.00 2.29
4515 5590 9.269415 GTTCGTTTATGGTTCATTTACATGTAC 57.731 33.333 4.68 0.00 31.48 2.90
4516 5591 8.780846 TCGTTTATGGTTCATTTACATGTACT 57.219 30.769 4.68 0.00 32.59 2.73
4517 5592 8.875803 TCGTTTATGGTTCATTTACATGTACTC 58.124 33.333 4.68 0.00 32.59 2.59
4521 5596 9.817809 TTATGGTTCATTTACATGTACTCTCTC 57.182 33.333 4.68 0.00 32.59 3.20
4522 5597 7.482169 TGGTTCATTTACATGTACTCTCTCT 57.518 36.000 4.68 0.00 32.59 3.10
4523 5598 7.323420 TGGTTCATTTACATGTACTCTCTCTG 58.677 38.462 4.68 0.00 32.59 3.35
4524 5599 7.039011 TGGTTCATTTACATGTACTCTCTCTGT 60.039 37.037 4.68 0.00 32.59 3.41
4525 5600 7.819900 GGTTCATTTACATGTACTCTCTCTGTT 59.180 37.037 4.68 0.00 32.59 3.16
4526 5601 8.865001 GTTCATTTACATGTACTCTCTCTGTTC 58.135 37.037 4.68 0.00 30.05 3.18
4527 5602 7.548097 TCATTTACATGTACTCTCTCTGTTCC 58.452 38.462 4.68 0.00 0.00 3.62
4528 5603 6.911250 TTTACATGTACTCTCTCTGTTCCA 57.089 37.500 4.68 0.00 0.00 3.53
4529 5604 6.911250 TTACATGTACTCTCTCTGTTCCAA 57.089 37.500 4.68 0.00 0.00 3.53
4530 5605 5.808366 ACATGTACTCTCTCTGTTCCAAA 57.192 39.130 0.00 0.00 0.00 3.28
4531 5606 6.365970 ACATGTACTCTCTCTGTTCCAAAT 57.634 37.500 0.00 0.00 0.00 2.32
4532 5607 6.773638 ACATGTACTCTCTCTGTTCCAAATT 58.226 36.000 0.00 0.00 0.00 1.82
4533 5608 7.907389 ACATGTACTCTCTCTGTTCCAAATTA 58.093 34.615 0.00 0.00 0.00 1.40
4534 5609 7.819900 ACATGTACTCTCTCTGTTCCAAATTAC 59.180 37.037 0.00 0.00 0.00 1.89
4535 5610 7.540474 TGTACTCTCTCTGTTCCAAATTACT 57.460 36.000 0.00 0.00 0.00 2.24
4536 5611 7.603651 TGTACTCTCTCTGTTCCAAATTACTC 58.396 38.462 0.00 0.00 0.00 2.59
4537 5612 5.715070 ACTCTCTCTGTTCCAAATTACTCG 58.285 41.667 0.00 0.00 0.00 4.18
4538 5613 5.244178 ACTCTCTCTGTTCCAAATTACTCGT 59.756 40.000 0.00 0.00 0.00 4.18
4539 5614 5.710984 TCTCTCTGTTCCAAATTACTCGTC 58.289 41.667 0.00 0.00 0.00 4.20
4540 5615 4.482386 TCTCTGTTCCAAATTACTCGTCG 58.518 43.478 0.00 0.00 0.00 5.12
4541 5616 4.022589 TCTCTGTTCCAAATTACTCGTCGT 60.023 41.667 0.00 0.00 0.00 4.34
4542 5617 3.985279 TCTGTTCCAAATTACTCGTCGTG 59.015 43.478 0.00 0.00 0.00 4.35
4543 5618 3.061322 TGTTCCAAATTACTCGTCGTGG 58.939 45.455 0.00 0.00 0.00 4.94
4544 5619 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
4545 5620 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
4546 5621 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
4547 5622 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
4548 5623 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
4549 5624 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
4550 5625 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
4551 5626 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
4552 5627 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
4553 5628 5.640218 TTACTCGTCGTGGTTTTAGTTTG 57.360 39.130 0.00 0.00 0.00 2.93
4554 5629 3.784338 ACTCGTCGTGGTTTTAGTTTGA 58.216 40.909 0.00 0.00 0.00 2.69
4555 5630 4.183101 ACTCGTCGTGGTTTTAGTTTGAA 58.817 39.130 0.00 0.00 0.00 2.69
4556 5631 4.630940 ACTCGTCGTGGTTTTAGTTTGAAA 59.369 37.500 0.00 0.00 0.00 2.69
4557 5632 5.146482 TCGTCGTGGTTTTAGTTTGAAAG 57.854 39.130 0.00 0.00 0.00 2.62
4558 5633 4.869297 TCGTCGTGGTTTTAGTTTGAAAGA 59.131 37.500 0.00 0.00 0.00 2.52
4559 5634 5.005971 TCGTCGTGGTTTTAGTTTGAAAGAG 59.994 40.000 0.00 0.00 0.00 2.85
4563 5638 6.258507 TCGTGGTTTTAGTTTGAAAGAGTACC 59.741 38.462 0.00 0.00 0.00 3.34
4624 5704 0.108945 GCTGGTGGCTGCTTTTGATC 60.109 55.000 0.00 0.00 38.06 2.92
4627 5707 1.607801 GGTGGCTGCTTTTGATCCCC 61.608 60.000 0.00 0.00 0.00 4.81
4683 5763 1.204228 TGCGTTGACGTCTTGACGAC 61.204 55.000 29.69 21.08 42.22 4.34
4837 5917 0.535797 GAAACGGATTCTCCCTCGGT 59.464 55.000 0.00 0.00 35.04 4.69
4839 5919 0.324460 AACGGATTCTCCCTCGGTCT 60.324 55.000 0.00 0.00 31.13 3.85
4840 5920 0.549950 ACGGATTCTCCCTCGGTCTA 59.450 55.000 0.00 0.00 31.13 2.59
4841 5921 1.240256 CGGATTCTCCCTCGGTCTAG 58.760 60.000 0.00 0.00 31.13 2.43
4842 5922 1.623163 GGATTCTCCCTCGGTCTAGG 58.377 60.000 0.00 0.00 36.30 3.02
4843 5923 1.145325 GGATTCTCCCTCGGTCTAGGA 59.855 57.143 0.00 0.00 39.15 2.94
4875 5955 2.186076 CGGCAGAGATCAACGACTTAC 58.814 52.381 0.00 0.00 0.00 2.34
4879 5959 5.348986 GGCAGAGATCAACGACTTACATAA 58.651 41.667 0.00 0.00 0.00 1.90
4881 5961 6.019479 GGCAGAGATCAACGACTTACATAAAG 60.019 42.308 0.00 0.00 41.33 1.85
4906 5986 1.550065 CTCCTCTATGACAACACGCG 58.450 55.000 3.53 3.53 0.00 6.01
4909 5989 1.742900 CTCTATGACAACACGCGCGG 61.743 60.000 35.22 24.36 0.00 6.46
4924 6004 1.714460 GCGCGGCGTCATATATATAGC 59.286 52.381 24.46 2.19 0.00 2.97
4928 6008 3.639538 CGGCGTCATATATATAGCACCC 58.360 50.000 14.77 1.62 0.00 4.61
4929 6009 3.067601 CGGCGTCATATATATAGCACCCA 59.932 47.826 14.77 0.00 0.00 4.51
4930 6010 4.440940 CGGCGTCATATATATAGCACCCAA 60.441 45.833 14.77 0.00 0.00 4.12
4931 6011 5.424757 GGCGTCATATATATAGCACCCAAA 58.575 41.667 14.77 0.00 0.00 3.28
4932 6012 5.878116 GGCGTCATATATATAGCACCCAAAA 59.122 40.000 14.77 0.00 0.00 2.44
4933 6013 6.037172 GGCGTCATATATATAGCACCCAAAAG 59.963 42.308 14.77 0.00 0.00 2.27
4934 6014 6.037172 GCGTCATATATATAGCACCCAAAAGG 59.963 42.308 10.38 0.00 43.78 3.11
4935 6015 7.327975 CGTCATATATATAGCACCCAAAAGGA 58.672 38.462 0.00 0.00 39.89 3.36
4936 6016 7.277981 CGTCATATATATAGCACCCAAAAGGAC 59.722 40.741 0.00 0.00 39.89 3.85
4937 6017 8.100791 GTCATATATATAGCACCCAAAAGGACA 58.899 37.037 0.00 0.00 39.89 4.02
4938 6018 8.321353 TCATATATATAGCACCCAAAAGGACAG 58.679 37.037 0.00 0.00 39.89 3.51
4939 6019 6.763715 ATATATAGCACCCAAAAGGACAGA 57.236 37.500 0.00 0.00 39.89 3.41
4940 6020 2.859165 TAGCACCCAAAAGGACAGAG 57.141 50.000 0.00 0.00 39.89 3.35
4941 6021 0.111253 AGCACCCAAAAGGACAGAGG 59.889 55.000 0.00 0.00 39.89 3.69
4942 6022 0.110486 GCACCCAAAAGGACAGAGGA 59.890 55.000 0.00 0.00 39.89 3.71
4943 6023 1.478654 GCACCCAAAAGGACAGAGGAA 60.479 52.381 0.00 0.00 39.89 3.36
4944 6024 2.944129 CACCCAAAAGGACAGAGGAAA 58.056 47.619 0.00 0.00 39.89 3.13
4945 6025 2.887152 CACCCAAAAGGACAGAGGAAAG 59.113 50.000 0.00 0.00 39.89 2.62
4946 6026 2.783510 ACCCAAAAGGACAGAGGAAAGA 59.216 45.455 0.00 0.00 39.89 2.52
4947 6027 3.204382 ACCCAAAAGGACAGAGGAAAGAA 59.796 43.478 0.00 0.00 39.89 2.52
4948 6028 4.140924 ACCCAAAAGGACAGAGGAAAGAAT 60.141 41.667 0.00 0.00 39.89 2.40
4949 6029 5.074515 ACCCAAAAGGACAGAGGAAAGAATA 59.925 40.000 0.00 0.00 39.89 1.75
4950 6030 6.010219 CCCAAAAGGACAGAGGAAAGAATAA 58.990 40.000 0.00 0.00 38.24 1.40
4951 6031 6.665248 CCCAAAAGGACAGAGGAAAGAATAAT 59.335 38.462 0.00 0.00 38.24 1.28
4952 6032 7.834181 CCCAAAAGGACAGAGGAAAGAATAATA 59.166 37.037 0.00 0.00 38.24 0.98
4953 6033 9.243105 CCAAAAGGACAGAGGAAAGAATAATAA 57.757 33.333 0.00 0.00 0.00 1.40
4956 6036 8.512966 AAGGACAGAGGAAAGAATAATAAAGC 57.487 34.615 0.00 0.00 0.00 3.51
4957 6037 7.633789 AGGACAGAGGAAAGAATAATAAAGCA 58.366 34.615 0.00 0.00 0.00 3.91
4958 6038 8.277918 AGGACAGAGGAAAGAATAATAAAGCAT 58.722 33.333 0.00 0.00 0.00 3.79
4959 6039 8.348507 GGACAGAGGAAAGAATAATAAAGCATG 58.651 37.037 0.00 0.00 0.00 4.06
4960 6040 9.113838 GACAGAGGAAAGAATAATAAAGCATGA 57.886 33.333 0.00 0.00 0.00 3.07
4961 6041 8.897752 ACAGAGGAAAGAATAATAAAGCATGAC 58.102 33.333 0.00 0.00 0.00 3.06
4962 6042 8.066595 CAGAGGAAAGAATAATAAAGCATGACG 58.933 37.037 0.00 0.00 0.00 4.35
4963 6043 7.987458 AGAGGAAAGAATAATAAAGCATGACGA 59.013 33.333 0.00 0.00 0.00 4.20
4964 6044 8.147642 AGGAAAGAATAATAAAGCATGACGAG 57.852 34.615 0.00 0.00 0.00 4.18
4965 6045 6.853362 GGAAAGAATAATAAAGCATGACGAGC 59.147 38.462 0.00 0.00 0.00 5.03
4966 6046 7.254932 GGAAAGAATAATAAAGCATGACGAGCT 60.255 37.037 0.00 0.00 45.97 4.09
4967 6047 6.536731 AGAATAATAAAGCATGACGAGCTG 57.463 37.500 0.00 0.00 42.53 4.24
4968 6048 5.468072 AGAATAATAAAGCATGACGAGCTGG 59.532 40.000 0.00 0.00 42.53 4.85
4969 6049 1.303309 ATAAAGCATGACGAGCTGGC 58.697 50.000 0.00 0.00 42.53 4.85
4970 6050 0.744414 TAAAGCATGACGAGCTGGCC 60.744 55.000 0.00 0.00 42.53 5.36
4971 6051 2.753009 AAAGCATGACGAGCTGGCCA 62.753 55.000 4.71 4.71 42.53 5.36
4972 6052 2.747460 GCATGACGAGCTGGCCAA 60.747 61.111 7.01 0.00 0.00 4.52
4973 6053 3.044059 GCATGACGAGCTGGCCAAC 62.044 63.158 7.01 0.92 0.00 3.77
4974 6054 2.434884 ATGACGAGCTGGCCAACG 60.435 61.111 19.99 19.99 0.00 4.10
4977 6057 3.642778 GACGAGCTGGCCAACGCTA 62.643 63.158 18.75 0.00 36.45 4.26
4978 6058 2.887568 CGAGCTGGCCAACGCTAG 60.888 66.667 18.75 15.04 45.93 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
2 3 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3 4 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4 5 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5 6 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
6 7 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7 8 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
8 9 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
9 10 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
10 11 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
11 12 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
12 13 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
13 14 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
14 15 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
15 16 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
16 17 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
17 18 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
18 19 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
19 20 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
20 21 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
21 22 1.719529 TTTGTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
22 23 2.845363 TTTTGTACTCCCTCCGTTCC 57.155 50.000 0.00 0.00 0.00 3.62
23 24 4.814771 CCATATTTTGTACTCCCTCCGTTC 59.185 45.833 0.00 0.00 0.00 3.95
24 25 4.472108 TCCATATTTTGTACTCCCTCCGTT 59.528 41.667 0.00 0.00 0.00 4.44
25 26 4.035112 TCCATATTTTGTACTCCCTCCGT 58.965 43.478 0.00 0.00 0.00 4.69
26 27 4.141801 TGTCCATATTTTGTACTCCCTCCG 60.142 45.833 0.00 0.00 0.00 4.63
27 28 5.367945 TGTCCATATTTTGTACTCCCTCC 57.632 43.478 0.00 0.00 0.00 4.30
28 29 5.239525 GCATGTCCATATTTTGTACTCCCTC 59.760 44.000 0.00 0.00 0.00 4.30
29 30 5.133221 GCATGTCCATATTTTGTACTCCCT 58.867 41.667 0.00 0.00 0.00 4.20
30 31 4.887071 TGCATGTCCATATTTTGTACTCCC 59.113 41.667 0.00 0.00 0.00 4.30
31 32 6.039717 ACATGCATGTCCATATTTTGTACTCC 59.960 38.462 26.61 0.00 35.87 3.85
32 33 7.031226 ACATGCATGTCCATATTTTGTACTC 57.969 36.000 26.61 0.00 35.87 2.59
33 34 7.992608 TCTACATGCATGTCCATATTTTGTACT 59.007 33.333 34.54 8.01 41.97 2.73
34 35 8.153479 TCTACATGCATGTCCATATTTTGTAC 57.847 34.615 34.54 0.00 41.97 2.90
43 44 2.092807 TGTGCTCTACATGCATGTCCAT 60.093 45.455 34.54 14.03 42.69 3.41
116 117 5.163754 CGTGGTTCTAGATTGACCAAATTCC 60.164 44.000 14.95 3.68 31.71 3.01
122 123 2.028476 CCACGTGGTTCTAGATTGACCA 60.028 50.000 26.95 10.21 0.00 4.02
130 131 5.962433 TCTTTTCTATCCACGTGGTTCTAG 58.038 41.667 32.74 27.20 36.34 2.43
132 133 4.884668 TCTTTTCTATCCACGTGGTTCT 57.115 40.909 32.74 20.63 36.34 3.01
135 136 5.591067 TGTTTTTCTTTTCTATCCACGTGGT 59.409 36.000 32.74 22.03 36.34 4.16
140 141 9.965824 TCTTGAATGTTTTTCTTTTCTATCCAC 57.034 29.630 0.00 0.00 0.00 4.02
161 162 6.414732 TGAAAGTCTTGGAAAAGAGTCTTGA 58.585 36.000 6.06 0.00 31.57 3.02
196 197 9.437045 GAGTTGCCTGTTATTTTTCAAATTTTG 57.563 29.630 2.59 2.59 0.00 2.44
204 205 5.047377 TCCATGGAGTTGCCTGTTATTTTTC 60.047 40.000 11.44 0.00 37.63 2.29
215 216 0.610232 ACAAGCTCCATGGAGTTGCC 60.610 55.000 36.32 22.76 43.70 4.52
227 228 1.600916 GGGGTGTGTGGACAAGCTC 60.601 63.158 0.00 0.00 32.49 4.09
229 230 1.454847 TTGGGGTGTGTGGACAAGC 60.455 57.895 0.00 0.00 32.49 4.01
243 244 1.508632 AATGACGACGACAAGTTGGG 58.491 50.000 7.96 1.14 38.59 4.12
273 274 3.110705 AGGTCACTGCATGTCCTTATCT 58.889 45.455 8.38 0.00 43.55 1.98
293 294 6.371548 TCCAGGAAAATTACAATTCTCGACAG 59.628 38.462 0.00 0.00 0.00 3.51
297 298 7.593825 ACTTTCCAGGAAAATTACAATTCTCG 58.406 34.615 15.79 2.23 30.84 4.04
314 328 3.052036 CAATCCGCACAAAACTTTCCAG 58.948 45.455 0.00 0.00 0.00 3.86
330 344 8.167605 ACAAATCATCTTCATCATCTCAATCC 57.832 34.615 0.00 0.00 0.00 3.01
388 402 5.813672 TGCGATAAAATCACACTAACCCTAC 59.186 40.000 0.00 0.00 0.00 3.18
441 1193 7.750229 ATGAAGAGTCACATGTTATGTTGTT 57.250 32.000 0.00 0.00 42.70 2.83
442 1194 7.308770 CCAATGAAGAGTCACATGTTATGTTGT 60.309 37.037 0.00 0.00 42.70 3.32
443 1195 7.025365 CCAATGAAGAGTCACATGTTATGTTG 58.975 38.462 0.00 0.00 42.70 3.33
453 1205 4.622260 TGTGATCCAATGAAGAGTCACA 57.378 40.909 2.22 2.22 42.35 3.58
457 1209 6.906157 AAAACATGTGATCCAATGAAGAGT 57.094 33.333 0.00 0.00 0.00 3.24
458 1210 7.487189 GCTAAAAACATGTGATCCAATGAAGAG 59.513 37.037 0.00 3.59 0.00 2.85
460 1212 6.532657 GGCTAAAAACATGTGATCCAATGAAG 59.467 38.462 0.00 3.25 0.00 3.02
546 1298 8.532819 GCTACCTAAAATGCCATATCTACTAGT 58.467 37.037 0.00 0.00 0.00 2.57
547 1299 7.982354 GGCTACCTAAAATGCCATATCTACTAG 59.018 40.741 0.00 0.00 44.34 2.57
549 1301 6.712276 GGCTACCTAAAATGCCATATCTACT 58.288 40.000 0.00 0.00 44.34 2.57
565 1317 7.751996 AGTTCAGTACTGTGGTGGCTACCTA 62.752 48.000 21.02 8.59 40.85 3.08
568 1320 2.299297 AGTTCAGTACTGTGGTGGCTAC 59.701 50.000 21.99 8.73 35.19 3.58
569 1321 2.605257 AGTTCAGTACTGTGGTGGCTA 58.395 47.619 21.99 0.00 35.19 3.93
570 1322 1.424638 AGTTCAGTACTGTGGTGGCT 58.575 50.000 21.99 9.53 35.19 4.75
579 1331 5.794894 CAATACCAACCTCAGTTCAGTACT 58.205 41.667 0.00 0.00 37.68 2.73
580 1332 4.392138 GCAATACCAACCTCAGTTCAGTAC 59.608 45.833 0.00 0.00 32.45 2.73
581 1333 4.564821 GGCAATACCAACCTCAGTTCAGTA 60.565 45.833 0.00 0.00 38.86 2.74
582 1334 3.412386 GCAATACCAACCTCAGTTCAGT 58.588 45.455 0.00 0.00 32.45 3.41
583 1335 2.749621 GGCAATACCAACCTCAGTTCAG 59.250 50.000 0.00 0.00 38.86 3.02
584 1336 2.790433 GGCAATACCAACCTCAGTTCA 58.210 47.619 0.00 0.00 38.86 3.18
592 1344 9.595247 CTTCTCAAAGACTTGGCAATACCAACC 62.595 44.444 0.00 0.00 43.37 3.77
593 1345 6.788321 CTTCTCAAAGACTTGGCAATACCAAC 60.788 42.308 0.00 0.00 43.37 3.77
594 1346 5.241506 CTTCTCAAAGACTTGGCAATACCAA 59.758 40.000 0.00 0.00 44.83 3.67
599 1425 2.560105 GCCTTCTCAAAGACTTGGCAAT 59.440 45.455 0.00 0.00 36.22 3.56
602 1428 1.609208 TGCCTTCTCAAAGACTTGGC 58.391 50.000 5.28 5.28 36.51 4.52
603 1429 4.654091 TTTTGCCTTCTCAAAGACTTGG 57.346 40.909 0.00 0.00 37.27 3.61
619 1445 3.613030 AGGGATTTTGCATGGATTTTGC 58.387 40.909 0.00 0.00 40.55 3.68
620 1446 6.224665 TCTAGGGATTTTGCATGGATTTTG 57.775 37.500 0.00 0.00 0.00 2.44
621 1447 6.612456 TGATCTAGGGATTTTGCATGGATTTT 59.388 34.615 0.00 0.00 31.46 1.82
622 1448 6.041296 GTGATCTAGGGATTTTGCATGGATTT 59.959 38.462 0.00 0.00 31.46 2.17
623 1449 5.537674 GTGATCTAGGGATTTTGCATGGATT 59.462 40.000 0.00 0.00 31.46 3.01
624 1450 5.075493 GTGATCTAGGGATTTTGCATGGAT 58.925 41.667 0.00 0.00 31.46 3.41
625 1451 4.079844 TGTGATCTAGGGATTTTGCATGGA 60.080 41.667 0.00 0.00 31.46 3.41
626 1452 4.037208 GTGTGATCTAGGGATTTTGCATGG 59.963 45.833 0.00 0.00 31.46 3.66
627 1453 4.641541 TGTGTGATCTAGGGATTTTGCATG 59.358 41.667 0.00 0.00 31.46 4.06
628 1454 4.858850 TGTGTGATCTAGGGATTTTGCAT 58.141 39.130 0.00 0.00 31.46 3.96
629 1455 4.299586 TGTGTGATCTAGGGATTTTGCA 57.700 40.909 0.00 0.00 31.46 4.08
664 1490 2.282462 GGTGGACCAACTGCCCTG 60.282 66.667 0.91 0.00 35.64 4.45
668 1494 0.953960 CCTTACGGTGGACCAACTGC 60.954 60.000 8.18 0.00 35.14 4.40
669 1495 0.395312 ACCTTACGGTGGACCAACTG 59.605 55.000 8.18 3.87 43.51 3.16
670 1496 0.683412 GACCTTACGGTGGACCAACT 59.317 55.000 8.18 0.00 45.73 3.16
671 1497 0.393820 TGACCTTACGGTGGACCAAC 59.606 55.000 0.00 0.00 45.73 3.77
672 1498 0.682852 CTGACCTTACGGTGGACCAA 59.317 55.000 0.00 0.00 45.73 3.67
673 1499 0.178955 TCTGACCTTACGGTGGACCA 60.179 55.000 0.00 0.00 45.73 4.02
674 1500 1.134788 CATCTGACCTTACGGTGGACC 60.135 57.143 0.00 0.00 45.73 4.46
675 1501 1.822990 TCATCTGACCTTACGGTGGAC 59.177 52.381 0.00 0.00 45.73 4.02
676 1502 2.100197 CTCATCTGACCTTACGGTGGA 58.900 52.381 0.00 0.00 45.73 4.02
677 1503 1.137086 CCTCATCTGACCTTACGGTGG 59.863 57.143 0.00 0.00 45.73 4.61
678 1504 1.825474 ACCTCATCTGACCTTACGGTG 59.175 52.381 0.00 0.00 45.73 4.94
680 1506 1.137086 CCACCTCATCTGACCTTACGG 59.863 57.143 0.00 0.00 0.00 4.02
681 1507 1.825474 ACCACCTCATCTGACCTTACG 59.175 52.381 0.00 0.00 0.00 3.18
682 1508 3.369576 GGAACCACCTCATCTGACCTTAC 60.370 52.174 0.00 0.00 35.41 2.34
683 1509 2.838202 GGAACCACCTCATCTGACCTTA 59.162 50.000 0.00 0.00 35.41 2.69
684 1510 1.630878 GGAACCACCTCATCTGACCTT 59.369 52.381 0.00 0.00 35.41 3.50
685 1511 1.280457 GGAACCACCTCATCTGACCT 58.720 55.000 0.00 0.00 35.41 3.85
686 1512 3.863407 GGAACCACCTCATCTGACC 57.137 57.895 0.00 0.00 35.41 4.02
696 1522 5.854010 AGAAGAAAAGAAAAGGAACCACC 57.146 39.130 0.00 0.00 39.35 4.61
697 1523 6.631016 ACAAGAAGAAAAGAAAAGGAACCAC 58.369 36.000 0.00 0.00 0.00 4.16
698 1524 6.850752 ACAAGAAGAAAAGAAAAGGAACCA 57.149 33.333 0.00 0.00 0.00 3.67
699 1525 8.443160 CAAAACAAGAAGAAAAGAAAAGGAACC 58.557 33.333 0.00 0.00 0.00 3.62
700 1526 8.988934 ACAAAACAAGAAGAAAAGAAAAGGAAC 58.011 29.630 0.00 0.00 0.00 3.62
702 1528 9.855021 CTACAAAACAAGAAGAAAAGAAAAGGA 57.145 29.630 0.00 0.00 0.00 3.36
703 1529 8.595533 GCTACAAAACAAGAAGAAAAGAAAAGG 58.404 33.333 0.00 0.00 0.00 3.11
704 1530 8.595533 GGCTACAAAACAAGAAGAAAAGAAAAG 58.404 33.333 0.00 0.00 0.00 2.27
705 1531 8.091449 TGGCTACAAAACAAGAAGAAAAGAAAA 58.909 29.630 0.00 0.00 0.00 2.29
706 1532 7.607250 TGGCTACAAAACAAGAAGAAAAGAAA 58.393 30.769 0.00 0.00 0.00 2.52
707 1533 7.164230 TGGCTACAAAACAAGAAGAAAAGAA 57.836 32.000 0.00 0.00 0.00 2.52
708 1534 6.767524 TGGCTACAAAACAAGAAGAAAAGA 57.232 33.333 0.00 0.00 0.00 2.52
709 1535 6.019559 GCTTGGCTACAAAACAAGAAGAAAAG 60.020 38.462 7.73 0.00 43.13 2.27
710 1536 5.810074 GCTTGGCTACAAAACAAGAAGAAAA 59.190 36.000 7.73 0.00 43.13 2.29
711 1537 5.127031 AGCTTGGCTACAAAACAAGAAGAAA 59.873 36.000 7.73 0.00 43.13 2.52
712 1538 4.644685 AGCTTGGCTACAAAACAAGAAGAA 59.355 37.500 7.73 0.00 43.13 2.52
713 1539 4.207165 AGCTTGGCTACAAAACAAGAAGA 58.793 39.130 7.73 0.00 43.13 2.87
714 1540 4.574599 AGCTTGGCTACAAAACAAGAAG 57.425 40.909 7.73 0.00 43.13 2.85
715 1541 4.400884 TCAAGCTTGGCTACAAAACAAGAA 59.599 37.500 25.73 0.00 43.13 2.52
716 1542 3.951037 TCAAGCTTGGCTACAAAACAAGA 59.049 39.130 25.73 0.00 43.13 3.02
717 1543 4.044426 GTCAAGCTTGGCTACAAAACAAG 58.956 43.478 23.67 0.00 43.28 3.16
718 1544 3.445450 TGTCAAGCTTGGCTACAAAACAA 59.555 39.130 29.73 5.23 38.25 2.83
719 1545 3.020274 TGTCAAGCTTGGCTACAAAACA 58.980 40.909 29.73 18.68 38.25 2.83
720 1546 3.066760 ACTGTCAAGCTTGGCTACAAAAC 59.933 43.478 29.73 16.44 38.25 2.43
721 1547 3.066621 CACTGTCAAGCTTGGCTACAAAA 59.933 43.478 29.73 9.34 38.25 2.44
722 1548 2.618241 CACTGTCAAGCTTGGCTACAAA 59.382 45.455 29.73 10.07 38.25 2.83
723 1549 2.221169 CACTGTCAAGCTTGGCTACAA 58.779 47.619 29.73 10.45 38.25 2.41
724 1550 1.543208 CCACTGTCAAGCTTGGCTACA 60.543 52.381 29.73 22.33 38.25 2.74
725 1551 1.160137 CCACTGTCAAGCTTGGCTAC 58.840 55.000 29.73 19.16 38.25 3.58
726 1552 0.764890 ACCACTGTCAAGCTTGGCTA 59.235 50.000 29.73 16.09 38.25 3.93
727 1553 0.764890 TACCACTGTCAAGCTTGGCT 59.235 50.000 29.73 13.29 42.56 4.75
728 1554 1.266989 GTTACCACTGTCAAGCTTGGC 59.733 52.381 24.15 24.15 0.00 4.52
729 1555 2.290641 GTGTTACCACTGTCAAGCTTGG 59.709 50.000 25.73 12.42 38.61 3.61
730 1556 2.032894 CGTGTTACCACTGTCAAGCTTG 60.033 50.000 20.81 20.81 39.55 4.01
731 1557 2.159014 TCGTGTTACCACTGTCAAGCTT 60.159 45.455 0.00 0.00 39.55 3.74
732 1558 1.411246 TCGTGTTACCACTGTCAAGCT 59.589 47.619 0.00 0.00 39.55 3.74
733 1559 1.860676 TCGTGTTACCACTGTCAAGC 58.139 50.000 0.00 0.00 39.55 4.01
734 1560 3.428870 GTCATCGTGTTACCACTGTCAAG 59.571 47.826 0.00 0.00 39.55 3.02
735 1561 3.181474 TGTCATCGTGTTACCACTGTCAA 60.181 43.478 0.00 0.00 39.55 3.18
736 1562 2.362717 TGTCATCGTGTTACCACTGTCA 59.637 45.455 0.00 0.00 39.55 3.58
737 1563 3.021269 TGTCATCGTGTTACCACTGTC 57.979 47.619 0.00 0.00 39.55 3.51
738 1564 3.462483 TTGTCATCGTGTTACCACTGT 57.538 42.857 0.00 0.00 39.55 3.55
739 1565 3.363970 GCTTTGTCATCGTGTTACCACTG 60.364 47.826 0.00 0.00 39.55 3.66
740 1566 2.806244 GCTTTGTCATCGTGTTACCACT 59.194 45.455 0.00 0.00 39.55 4.00
741 1567 2.806244 AGCTTTGTCATCGTGTTACCAC 59.194 45.455 0.00 0.00 38.27 4.16
742 1568 3.120321 AGCTTTGTCATCGTGTTACCA 57.880 42.857 0.00 0.00 0.00 3.25
743 1569 4.435651 GCTTAGCTTTGTCATCGTGTTACC 60.436 45.833 0.00 0.00 0.00 2.85
744 1570 4.151689 TGCTTAGCTTTGTCATCGTGTTAC 59.848 41.667 5.60 0.00 0.00 2.50
751 1577 6.246420 TCTTTTCTGCTTAGCTTTGTCATC 57.754 37.500 5.60 0.00 0.00 2.92
753 1579 6.449635 TTTCTTTTCTGCTTAGCTTTGTCA 57.550 33.333 5.60 0.00 0.00 3.58
760 1586 5.221244 TGTTCCCTTTTCTTTTCTGCTTAGC 60.221 40.000 0.00 0.00 0.00 3.09
761 1587 6.391227 TGTTCCCTTTTCTTTTCTGCTTAG 57.609 37.500 0.00 0.00 0.00 2.18
764 1590 4.895297 TGATGTTCCCTTTTCTTTTCTGCT 59.105 37.500 0.00 0.00 0.00 4.24
765 1591 4.984785 GTGATGTTCCCTTTTCTTTTCTGC 59.015 41.667 0.00 0.00 0.00 4.26
778 1609 1.069378 GTCGTCGTCGTGATGTTCCC 61.069 60.000 1.33 0.00 38.33 3.97
785 1616 1.894223 CTTCCTCGTCGTCGTCGTGA 61.894 60.000 13.90 8.58 38.33 4.35
786 1617 1.509370 CTTCCTCGTCGTCGTCGTG 60.509 63.158 11.41 9.05 38.33 4.35
800 1631 0.391793 CGGTTCCTGCTCCTTCTTCC 60.392 60.000 0.00 0.00 0.00 3.46
808 1639 0.036306 TTTCTTCCCGGTTCCTGCTC 59.964 55.000 0.00 0.00 0.00 4.26
811 1642 1.623811 TCTCTTTCTTCCCGGTTCCTG 59.376 52.381 0.00 0.00 0.00 3.86
816 1647 0.317479 CACGTCTCTTTCTTCCCGGT 59.683 55.000 0.00 0.00 0.00 5.28
818 1649 0.601558 TCCACGTCTCTTTCTTCCCG 59.398 55.000 0.00 0.00 0.00 5.14
820 1651 2.475487 CGTTTCCACGTCTCTTTCTTCC 59.525 50.000 0.00 0.00 41.84 3.46
822 1653 2.101917 TCCGTTTCCACGTCTCTTTCTT 59.898 45.455 0.00 0.00 45.62 2.52
912 1773 2.547826 GAAGATTAAACGGACGGAGGG 58.452 52.381 0.00 0.00 0.00 4.30
918 1779 3.119209 AGACGAGGGAAGATTAAACGGAC 60.119 47.826 0.00 0.00 0.00 4.79
956 1840 0.601046 GGCTTGGCTTCCTTTTGTGC 60.601 55.000 0.00 0.00 0.00 4.57
1021 1905 1.814248 GCAGGTAATCTAAAGGGCGGG 60.814 57.143 0.00 0.00 0.00 6.13
1055 1939 0.645868 GCAGGATTCTTGACGCGTAC 59.354 55.000 13.97 6.75 0.00 3.67
1083 1967 3.839432 GAACCTCCTCCGCCTCCG 61.839 72.222 0.00 0.00 0.00 4.63
1084 1968 1.990614 AAGAACCTCCTCCGCCTCC 60.991 63.158 0.00 0.00 0.00 4.30
1085 1969 1.219393 CAAGAACCTCCTCCGCCTC 59.781 63.158 0.00 0.00 0.00 4.70
1086 1970 2.960688 GCAAGAACCTCCTCCGCCT 61.961 63.158 0.00 0.00 0.00 5.52
1087 1971 2.436824 GCAAGAACCTCCTCCGCC 60.437 66.667 0.00 0.00 0.00 6.13
1088 1972 2.436824 GGCAAGAACCTCCTCCGC 60.437 66.667 0.00 0.00 0.00 5.54
1089 1973 2.125512 CGGCAAGAACCTCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
1090 1974 2.245438 CTCCGGCAAGAACCTCCTCC 62.245 65.000 0.00 0.00 0.00 4.30
1092 1976 2.294078 CCTCCGGCAAGAACCTCCT 61.294 63.158 0.00 0.00 0.00 3.69
1093 1977 2.245438 CTCCTCCGGCAAGAACCTCC 62.245 65.000 0.00 0.00 0.00 4.30
1094 1978 1.219393 CTCCTCCGGCAAGAACCTC 59.781 63.158 0.00 0.00 0.00 3.85
1095 1979 2.294078 CCTCCTCCGGCAAGAACCT 61.294 63.158 0.00 0.00 0.00 3.50
1132 2016 1.605453 GGTCATCCTAAACCGGCCA 59.395 57.895 0.00 0.00 0.00 5.36
1549 2433 0.179234 TTGGTTGCTCACGGAAGACA 59.821 50.000 0.00 0.00 0.00 3.41
1571 2455 0.106217 GACAGGGAGGGAGAGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
1575 2459 2.212794 GACGGACAGGGAGGGAGAGA 62.213 65.000 0.00 0.00 0.00 3.10
1579 2463 4.393778 GGGACGGACAGGGAGGGA 62.394 72.222 0.00 0.00 0.00 4.20
1582 2466 1.562672 ATTTGGGGACGGACAGGGAG 61.563 60.000 0.00 0.00 0.00 4.30
1588 2472 4.266714 TGATTAAGAATTTGGGGACGGAC 58.733 43.478 0.00 0.00 0.00 4.79
1609 2493 6.730175 ACTGCTTCTACGACAACTATCTATG 58.270 40.000 0.00 0.00 0.00 2.23
1650 2534 9.134055 GGTCAATTTCATACTACTACTACTCCT 57.866 37.037 0.00 0.00 0.00 3.69
1651 2535 8.910944 TGGTCAATTTCATACTACTACTACTCC 58.089 37.037 0.00 0.00 0.00 3.85
1656 2540 8.893727 GCAATTGGTCAATTTCATACTACTACT 58.106 33.333 7.72 0.00 38.84 2.57
1657 2541 7.850982 CGCAATTGGTCAATTTCATACTACTAC 59.149 37.037 7.72 0.00 38.84 2.73
1658 2542 7.766738 TCGCAATTGGTCAATTTCATACTACTA 59.233 33.333 7.72 0.00 38.84 1.82
1659 2543 6.597672 TCGCAATTGGTCAATTTCATACTACT 59.402 34.615 7.72 0.00 38.84 2.57
1660 2544 6.781138 TCGCAATTGGTCAATTTCATACTAC 58.219 36.000 7.72 0.00 38.84 2.73
1661 2545 6.993786 TCGCAATTGGTCAATTTCATACTA 57.006 33.333 7.72 0.00 38.84 1.82
1947 2834 2.365617 ACATACGTAGATGCAAGGAGGG 59.634 50.000 0.08 0.00 0.00 4.30
1962 2849 3.726235 CGAGATGACAACTAGCACATACG 59.274 47.826 0.00 0.00 0.00 3.06
1963 2850 4.921547 TCGAGATGACAACTAGCACATAC 58.078 43.478 0.00 0.00 0.00 2.39
1977 2951 3.515630 GAAGTGCATCAACTCGAGATGA 58.484 45.455 25.16 25.16 44.34 2.92
1996 2970 3.055458 TCATGGTAATTCTGAGCACCGAA 60.055 43.478 0.00 0.00 33.55 4.30
1998 2972 2.905075 TCATGGTAATTCTGAGCACCG 58.095 47.619 0.00 0.00 33.55 4.94
1999 2973 4.712476 AGATCATGGTAATTCTGAGCACC 58.288 43.478 0.00 0.00 0.00 5.01
2007 2981 5.601662 TCAACCGAGAGATCATGGTAATTC 58.398 41.667 0.00 0.00 33.45 2.17
2009 2983 5.815233 ATCAACCGAGAGATCATGGTAAT 57.185 39.130 0.00 0.00 33.45 1.89
2011 2985 4.740634 GCAATCAACCGAGAGATCATGGTA 60.741 45.833 0.00 0.00 33.45 3.25
2015 2989 2.159043 ACGCAATCAACCGAGAGATCAT 60.159 45.455 0.00 0.00 0.00 2.45
2018 2992 1.645034 CACGCAATCAACCGAGAGAT 58.355 50.000 0.00 0.00 0.00 2.75
2133 3107 4.543590 TCTCCAGTTCCTTCATCTTGAC 57.456 45.455 0.00 0.00 0.00 3.18
2134 3108 4.564406 GCTTCTCCAGTTCCTTCATCTTGA 60.564 45.833 0.00 0.00 0.00 3.02
2305 3280 8.641498 AGAATCACCAGAACTGTTATTGAAAT 57.359 30.769 0.00 0.00 0.00 2.17
2395 3370 4.521256 GTCAGTTACAACAATAAAGCCCCA 59.479 41.667 0.00 0.00 0.00 4.96
2398 3373 5.458015 GGTGTCAGTTACAACAATAAAGCC 58.542 41.667 0.00 0.00 45.80 4.35
2576 3551 4.211374 CAGGTTCAGGTGACTAAAAGAACG 59.789 45.833 0.00 0.00 39.35 3.95
2588 3563 3.149899 CTGCTAGCAGGTTCAGGTG 57.850 57.895 33.06 8.57 40.17 4.00
2604 3579 5.058490 TCACATCCATGCATACATACACTG 58.942 41.667 0.00 0.00 33.67 3.66
2605 3580 5.294734 TCACATCCATGCATACATACACT 57.705 39.130 0.00 0.00 33.67 3.55
2676 3656 9.862371 TTCTTGAGTCTGAAGATAAACAGATAC 57.138 33.333 2.36 0.00 43.46 2.24
2688 3668 4.759183 CCTTTCCCTTTCTTGAGTCTGAAG 59.241 45.833 0.00 0.00 0.00 3.02
2723 3703 1.131315 GATTTCTTCCGTTGGCTCTGC 59.869 52.381 0.00 0.00 0.00 4.26
2832 3812 9.773328 ACAATAAAGAATGAACATACGAATGTG 57.227 29.630 0.00 0.00 45.79 3.21
2947 3928 5.140177 GTCAAAATGACTAAGCGTGTTGAG 58.860 41.667 3.31 0.00 43.73 3.02
2997 3978 3.385115 ACCACCAAATTTTAACCCACCA 58.615 40.909 0.00 0.00 0.00 4.17
3009 3990 4.522789 GTGGACATTCTACAACCACCAAAT 59.477 41.667 0.00 0.00 43.29 2.32
3023 4004 2.094026 GGAATTTGGGCAGTGGACATTC 60.094 50.000 0.00 0.00 0.00 2.67
3109 4090 8.517062 AGGAAATCTGGATTCATAACAAGAAG 57.483 34.615 0.00 0.00 0.00 2.85
3206 4187 8.120140 AGTGGGTAACTAACTAAGTTCTACAG 57.880 38.462 0.00 0.00 45.64 2.74
3310 4298 0.317160 GCTGTTTTGGGGGTTGCTAC 59.683 55.000 0.00 0.00 0.00 3.58
3328 4317 4.578928 TGACTTCACAAAGAAAAGTAGGGC 59.421 41.667 0.00 0.00 35.40 5.19
3343 4332 7.749570 CACTGAGATTGATTGAATTGACTTCAC 59.250 37.037 0.00 0.00 43.54 3.18
3397 4387 9.797642 ATGTTTTCATGCCTAACTATGATGATA 57.202 29.630 0.00 0.00 39.30 2.15
3401 4391 8.978874 TGTATGTTTTCATGCCTAACTATGAT 57.021 30.769 0.00 0.00 41.18 2.45
3458 4448 7.357368 GCGCTACTAATGTTTATAGTCGTTGAG 60.357 40.741 0.00 0.00 35.34 3.02
3464 4454 6.145534 TGCATGCGCTACTAATGTTTATAGTC 59.854 38.462 14.09 0.00 39.64 2.59
3483 4473 0.378257 CCAACTACCACGATGCATGC 59.622 55.000 11.82 11.82 0.00 4.06
3506 4496 9.788960 GTTTATTGTTCTCAGAGTTTGTTTTCT 57.211 29.630 0.00 0.00 0.00 2.52
3550 4541 4.058817 GCTACTTATGCTTATTGCCGTCT 58.941 43.478 0.00 0.00 42.00 4.18
3554 4545 3.486383 TGGGCTACTTATGCTTATTGCC 58.514 45.455 0.00 0.00 42.00 4.52
3701 4692 3.982576 AAATGGACGTCTCAACCAAAC 57.017 42.857 16.46 0.00 37.24 2.93
3741 4734 0.815734 CAGCCTGGAAGCATGAAAGG 59.184 55.000 0.00 0.00 34.23 3.11
3742 4735 1.471684 GACAGCCTGGAAGCATGAAAG 59.528 52.381 0.00 0.00 34.23 2.62
3743 4736 1.538047 GACAGCCTGGAAGCATGAAA 58.462 50.000 0.00 0.00 34.23 2.69
3778 4771 6.171213 TGCACCATCATCATCTATTCATCTC 58.829 40.000 0.00 0.00 0.00 2.75
3801 4794 3.181521 TGTCGCGAGCATCACTTATTTTG 60.182 43.478 10.24 0.00 33.17 2.44
3828 4821 7.506328 ACTACTTACTGCAACTTAAAAAGGG 57.494 36.000 0.00 0.00 0.00 3.95
3986 4979 2.545526 CTGGCCTACATATGCAAACTCG 59.454 50.000 3.32 0.00 0.00 4.18
4151 5168 1.629013 GTTCATCATCAGCGACGACA 58.371 50.000 0.00 0.00 0.00 4.35
4159 5176 1.536922 CCCTCGTCGGTTCATCATCAG 60.537 57.143 0.00 0.00 0.00 2.90
4160 5177 0.459899 CCCTCGTCGGTTCATCATCA 59.540 55.000 0.00 0.00 0.00 3.07
4162 5179 1.823295 CCCCTCGTCGGTTCATCAT 59.177 57.895 0.00 0.00 0.00 2.45
4193 5210 3.544684 ACACTTGTCAAACAGCTGATCA 58.455 40.909 23.35 8.66 0.00 2.92
4249 5268 3.039202 GACTCCATTGGCGCAACCG 62.039 63.158 10.83 0.00 43.94 4.44
4270 5289 1.270305 TGACACCTTCCAGAAGCGAAG 60.270 52.381 1.68 0.00 37.11 3.79
4316 5339 2.109126 GGACAATGGCCGCTGAGTC 61.109 63.158 10.69 7.80 0.00 3.36
4351 5426 1.536174 CCCTGCACCCCACCAATTT 60.536 57.895 0.00 0.00 0.00 1.82
4352 5427 2.120274 CCCTGCACCCCACCAATT 59.880 61.111 0.00 0.00 0.00 2.32
4353 5428 2.863484 TCCCTGCACCCCACCAAT 60.863 61.111 0.00 0.00 0.00 3.16
4366 5441 0.045469 AGAATTCCTCCAGGCTCCCT 59.955 55.000 0.65 0.00 34.44 4.20
4367 5442 0.182299 CAGAATTCCTCCAGGCTCCC 59.818 60.000 0.65 0.00 34.44 4.30
4368 5443 1.140652 CTCAGAATTCCTCCAGGCTCC 59.859 57.143 0.65 0.00 34.44 4.70
4369 5444 1.140652 CCTCAGAATTCCTCCAGGCTC 59.859 57.143 0.65 0.00 34.44 4.70
4370 5445 1.211456 CCTCAGAATTCCTCCAGGCT 58.789 55.000 0.65 0.00 34.44 4.58
4371 5446 0.465278 GCCTCAGAATTCCTCCAGGC 60.465 60.000 15.15 15.15 39.55 4.85
4372 5447 0.179062 CGCCTCAGAATTCCTCCAGG 60.179 60.000 0.65 3.72 0.00 4.45
4373 5448 0.539051 ACGCCTCAGAATTCCTCCAG 59.461 55.000 0.65 0.00 0.00 3.86
4374 5449 0.250234 CACGCCTCAGAATTCCTCCA 59.750 55.000 0.65 0.00 0.00 3.86
4375 5450 1.092345 GCACGCCTCAGAATTCCTCC 61.092 60.000 0.65 0.00 0.00 4.30
4376 5451 0.107945 AGCACGCCTCAGAATTCCTC 60.108 55.000 0.65 0.00 0.00 3.71
4377 5452 0.392193 CAGCACGCCTCAGAATTCCT 60.392 55.000 0.65 0.00 0.00 3.36
4404 5479 2.043852 GCTCCTCCGAGTCTCCCA 60.044 66.667 0.00 0.00 38.49 4.37
4443 5518 2.723010 GCGCATCAAGAAACTCTTCACG 60.723 50.000 0.30 0.00 33.78 4.35
4452 5527 1.440188 CAACGCGCGCATCAAGAAA 60.440 52.632 32.58 0.00 0.00 2.52
4485 5560 7.877003 TGTAAATGAACCATAAACGAACATGT 58.123 30.769 0.00 0.00 0.00 3.21
4487 5562 8.519526 ACATGTAAATGAACCATAAACGAACAT 58.480 29.630 0.00 0.00 0.00 2.71
4507 5582 6.911250 TTTGGAACAGAGAGAGTACATGTA 57.089 37.500 0.08 0.08 42.39 2.29
4510 5585 8.140112 AGTAATTTGGAACAGAGAGAGTACAT 57.860 34.615 0.00 0.00 42.39 2.29
4512 5587 6.748198 CGAGTAATTTGGAACAGAGAGAGTAC 59.252 42.308 0.00 0.00 42.39 2.73
4513 5588 6.433404 ACGAGTAATTTGGAACAGAGAGAGTA 59.567 38.462 0.00 0.00 42.39 2.59
4514 5589 5.244178 ACGAGTAATTTGGAACAGAGAGAGT 59.756 40.000 0.00 0.00 42.39 3.24
4515 5590 5.715070 ACGAGTAATTTGGAACAGAGAGAG 58.285 41.667 0.00 0.00 42.39 3.20
4516 5591 5.619309 CGACGAGTAATTTGGAACAGAGAGA 60.619 44.000 0.00 0.00 42.39 3.10
4517 5592 4.559251 CGACGAGTAATTTGGAACAGAGAG 59.441 45.833 0.00 0.00 42.39 3.20
4519 5594 4.090066 CACGACGAGTAATTTGGAACAGAG 59.910 45.833 0.00 0.00 42.39 3.35
4520 5595 3.985279 CACGACGAGTAATTTGGAACAGA 59.015 43.478 0.00 0.00 42.39 3.41
4521 5596 3.122948 CCACGACGAGTAATTTGGAACAG 59.877 47.826 0.00 0.00 42.39 3.16
4522 5597 3.061322 CCACGACGAGTAATTTGGAACA 58.939 45.455 0.00 0.00 0.00 3.18
4523 5598 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
4524 5599 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
4525 5600 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
4526 5601 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
4527 5602 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
4528 5603 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
4529 5604 6.479660 TCAAACTAAAACCACGACGAGTAATT 59.520 34.615 0.00 1.08 0.00 1.40
4530 5605 5.984926 TCAAACTAAAACCACGACGAGTAAT 59.015 36.000 0.00 0.00 0.00 1.89
4531 5606 5.347342 TCAAACTAAAACCACGACGAGTAA 58.653 37.500 0.00 0.00 0.00 2.24
4532 5607 4.930963 TCAAACTAAAACCACGACGAGTA 58.069 39.130 0.00 0.00 0.00 2.59
4533 5608 3.784338 TCAAACTAAAACCACGACGAGT 58.216 40.909 0.00 0.00 0.00 4.18
4534 5609 4.782252 TTCAAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
4535 5610 4.869297 TCTTTCAAACTAAAACCACGACGA 59.131 37.500 0.00 0.00 0.00 4.20
4536 5611 5.146482 TCTTTCAAACTAAAACCACGACG 57.854 39.130 0.00 0.00 0.00 5.12
4537 5612 6.115450 ACTCTTTCAAACTAAAACCACGAC 57.885 37.500 0.00 0.00 0.00 4.34
4538 5613 6.258507 GGTACTCTTTCAAACTAAAACCACGA 59.741 38.462 0.00 0.00 0.00 4.35
4539 5614 6.037391 TGGTACTCTTTCAAACTAAAACCACG 59.963 38.462 0.00 0.00 0.00 4.94
4540 5615 7.191551 GTGGTACTCTTTCAAACTAAAACCAC 58.808 38.462 0.00 0.00 38.41 4.16
4541 5616 6.037391 CGTGGTACTCTTTCAAACTAAAACCA 59.963 38.462 0.00 0.00 0.00 3.67
4542 5617 6.424683 CGTGGTACTCTTTCAAACTAAAACC 58.575 40.000 0.00 0.00 0.00 3.27
4543 5618 5.905733 GCGTGGTACTCTTTCAAACTAAAAC 59.094 40.000 0.00 0.00 0.00 2.43
4544 5619 5.585445 TGCGTGGTACTCTTTCAAACTAAAA 59.415 36.000 0.00 0.00 0.00 1.52
4545 5620 5.117584 TGCGTGGTACTCTTTCAAACTAAA 58.882 37.500 0.00 0.00 0.00 1.85
4546 5621 4.695396 TGCGTGGTACTCTTTCAAACTAA 58.305 39.130 0.00 0.00 0.00 2.24
4547 5622 4.304110 CTGCGTGGTACTCTTTCAAACTA 58.696 43.478 0.00 0.00 0.00 2.24
4548 5623 3.131396 CTGCGTGGTACTCTTTCAAACT 58.869 45.455 0.00 0.00 0.00 2.66
4549 5624 2.349532 GCTGCGTGGTACTCTTTCAAAC 60.350 50.000 0.00 0.00 0.00 2.93
4550 5625 1.871039 GCTGCGTGGTACTCTTTCAAA 59.129 47.619 0.00 0.00 0.00 2.69
4551 5626 1.508632 GCTGCGTGGTACTCTTTCAA 58.491 50.000 0.00 0.00 0.00 2.69
4552 5627 0.666274 CGCTGCGTGGTACTCTTTCA 60.666 55.000 14.93 0.00 0.00 2.69
4553 5628 1.352156 CCGCTGCGTGGTACTCTTTC 61.352 60.000 21.59 0.00 0.00 2.62
4554 5629 1.374252 CCGCTGCGTGGTACTCTTT 60.374 57.895 21.59 0.00 0.00 2.52
4555 5630 2.261671 CCGCTGCGTGGTACTCTT 59.738 61.111 21.59 0.00 0.00 2.85
4556 5631 2.989824 ACCGCTGCGTGGTACTCT 60.990 61.111 21.59 0.00 45.32 3.24
4557 5632 2.809601 CACCGCTGCGTGGTACTC 60.810 66.667 21.59 0.00 45.40 2.59
4558 5633 3.612681 ACACCGCTGCGTGGTACT 61.613 61.111 21.59 1.08 45.40 2.73
4559 5634 3.411351 CACACCGCTGCGTGGTAC 61.411 66.667 21.59 0.00 45.40 3.34
4563 5638 4.662961 TCCTCACACCGCTGCGTG 62.663 66.667 21.59 19.64 39.75 5.34
4573 5648 1.891150 GACCTACCTTTCGTCCTCACA 59.109 52.381 0.00 0.00 0.00 3.58
4627 5707 0.690762 TCCAGAAAGGAAAGGACGGG 59.309 55.000 0.00 0.00 45.65 5.28
4786 5866 0.110644 GCAAGAGAAAACGCGACCAG 60.111 55.000 15.93 0.00 0.00 4.00
4794 5874 0.312102 AAGCAGCCGCAAGAGAAAAC 59.688 50.000 0.00 0.00 42.27 2.43
4806 5886 2.644992 CGTTTCCCACAAGCAGCC 59.355 61.111 0.00 0.00 0.00 4.85
4837 5917 1.325355 CGCCCGTTTCCTATCCTAGA 58.675 55.000 0.00 0.00 0.00 2.43
4839 5919 1.751349 GCCGCCCGTTTCCTATCCTA 61.751 60.000 0.00 0.00 0.00 2.94
4840 5920 3.103091 GCCGCCCGTTTCCTATCCT 62.103 63.158 0.00 0.00 0.00 3.24
4841 5921 2.590859 GCCGCCCGTTTCCTATCC 60.591 66.667 0.00 0.00 0.00 2.59
4842 5922 1.887707 CTGCCGCCCGTTTCCTATC 60.888 63.158 0.00 0.00 0.00 2.08
4843 5923 2.189521 CTGCCGCCCGTTTCCTAT 59.810 61.111 0.00 0.00 0.00 2.57
4875 5955 3.648067 TCATAGAGGAGGTGCCCTTTATG 59.352 47.826 11.90 11.90 45.54 1.90
4879 5959 1.273838 TGTCATAGAGGAGGTGCCCTT 60.274 52.381 0.00 0.00 36.49 3.95
4881 5961 1.134371 GTTGTCATAGAGGAGGTGCCC 60.134 57.143 0.00 0.00 37.37 5.36
4906 5986 3.050619 GGTGCTATATATATGACGCCGC 58.949 50.000 5.44 0.19 0.00 6.53
4909 5989 6.037172 CCTTTTGGGTGCTATATATATGACGC 59.963 42.308 5.44 8.06 35.46 5.19
4917 5997 5.071788 CCTCTGTCCTTTTGGGTGCTATATA 59.928 44.000 0.00 0.00 40.87 0.86
4922 6002 0.111253 CCTCTGTCCTTTTGGGTGCT 59.889 55.000 0.00 0.00 40.87 4.40
4924 6004 2.656947 TTCCTCTGTCCTTTTGGGTG 57.343 50.000 0.00 0.00 40.87 4.61
4930 6010 8.961634 GCTTTATTATTCTTTCCTCTGTCCTTT 58.038 33.333 0.00 0.00 0.00 3.11
4931 6011 8.109634 TGCTTTATTATTCTTTCCTCTGTCCTT 58.890 33.333 0.00 0.00 0.00 3.36
4932 6012 7.633789 TGCTTTATTATTCTTTCCTCTGTCCT 58.366 34.615 0.00 0.00 0.00 3.85
4933 6013 7.865706 TGCTTTATTATTCTTTCCTCTGTCC 57.134 36.000 0.00 0.00 0.00 4.02
4934 6014 9.113838 TCATGCTTTATTATTCTTTCCTCTGTC 57.886 33.333 0.00 0.00 0.00 3.51
4935 6015 8.897752 GTCATGCTTTATTATTCTTTCCTCTGT 58.102 33.333 0.00 0.00 0.00 3.41
4936 6016 8.066595 CGTCATGCTTTATTATTCTTTCCTCTG 58.933 37.037 0.00 0.00 0.00 3.35
4937 6017 7.987458 TCGTCATGCTTTATTATTCTTTCCTCT 59.013 33.333 0.00 0.00 0.00 3.69
4938 6018 8.142994 TCGTCATGCTTTATTATTCTTTCCTC 57.857 34.615 0.00 0.00 0.00 3.71
4939 6019 7.254932 GCTCGTCATGCTTTATTATTCTTTCCT 60.255 37.037 0.00 0.00 0.00 3.36
4940 6020 6.853362 GCTCGTCATGCTTTATTATTCTTTCC 59.147 38.462 0.00 0.00 0.00 3.13
4941 6021 7.585573 CAGCTCGTCATGCTTTATTATTCTTTC 59.414 37.037 0.00 0.00 38.92 2.62
4942 6022 7.412853 CAGCTCGTCATGCTTTATTATTCTTT 58.587 34.615 0.00 0.00 38.92 2.52
4943 6023 6.017605 CCAGCTCGTCATGCTTTATTATTCTT 60.018 38.462 0.00 0.00 38.92 2.52
4944 6024 5.468072 CCAGCTCGTCATGCTTTATTATTCT 59.532 40.000 0.00 0.00 38.92 2.40
4945 6025 5.683859 CCAGCTCGTCATGCTTTATTATTC 58.316 41.667 0.00 0.00 38.92 1.75
4946 6026 4.023707 GCCAGCTCGTCATGCTTTATTATT 60.024 41.667 0.00 0.00 38.92 1.40
4947 6027 3.499918 GCCAGCTCGTCATGCTTTATTAT 59.500 43.478 0.00 0.00 38.92 1.28
4948 6028 2.872245 GCCAGCTCGTCATGCTTTATTA 59.128 45.455 0.00 0.00 38.92 0.98
4949 6029 1.672881 GCCAGCTCGTCATGCTTTATT 59.327 47.619 0.00 0.00 38.92 1.40
4950 6030 1.303309 GCCAGCTCGTCATGCTTTAT 58.697 50.000 0.00 0.00 38.92 1.40
4951 6031 0.744414 GGCCAGCTCGTCATGCTTTA 60.744 55.000 0.00 0.00 38.92 1.85
4952 6032 2.042831 GGCCAGCTCGTCATGCTTT 61.043 57.895 0.00 0.00 38.92 3.51
4953 6033 2.437359 GGCCAGCTCGTCATGCTT 60.437 61.111 0.00 0.00 38.92 3.91
4954 6034 3.258228 TTGGCCAGCTCGTCATGCT 62.258 57.895 5.11 0.00 42.06 3.79
4955 6035 2.747460 TTGGCCAGCTCGTCATGC 60.747 61.111 5.11 0.00 0.00 4.06
4956 6036 2.743752 CGTTGGCCAGCTCGTCATG 61.744 63.158 18.19 0.00 0.00 3.07
4957 6037 2.434884 CGTTGGCCAGCTCGTCAT 60.435 61.111 18.19 0.00 0.00 3.06
4959 6039 3.642778 TAGCGTTGGCCAGCTCGTC 62.643 63.158 21.81 14.99 43.44 4.20
4960 6040 3.649277 CTAGCGTTGGCCAGCTCGT 62.649 63.158 21.81 12.78 43.44 4.18
4961 6041 2.887568 CTAGCGTTGGCCAGCTCG 60.888 66.667 21.81 19.78 43.44 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.