Multiple sequence alignment - TraesCS7A01G406900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G406900 chr7A 100.000 3254 0 0 1 3254 592260691 592263944 0.000000e+00 6010
1 TraesCS7A01G406900 chr7A 90.000 270 23 4 200 466 561888244 561887976 2.400000e-91 346
2 TraesCS7A01G406900 chr7D 88.862 2864 157 62 459 3231 517553624 517556416 0.000000e+00 3373
3 TraesCS7A01G406900 chr7B 91.735 1827 103 23 613 2412 550656476 550658281 0.000000e+00 2494
4 TraesCS7A01G406900 chr7B 85.484 806 53 21 2467 3254 550658282 550659041 0.000000e+00 782
5 TraesCS7A01G406900 chr7B 86.395 147 8 7 466 604 550656247 550656389 2.020000e-32 150
6 TraesCS7A01G406900 chr2A 91.729 266 20 2 200 464 103588123 103588387 5.130000e-98 368
7 TraesCS7A01G406900 chr2A 90.741 270 23 2 199 467 528661697 528661965 3.090000e-95 359
8 TraesCS7A01G406900 chr4A 91.353 266 21 2 200 464 104373054 104373318 2.390000e-96 363
9 TraesCS7A01G406900 chr4A 90.494 263 22 2 199 460 943455 943715 8.640000e-91 344
10 TraesCS7A01G406900 chr3B 90.775 271 21 4 196 464 811005629 811005361 3.090000e-95 359
11 TraesCS7A01G406900 chr6A 91.011 267 21 3 200 464 115182298 115182563 1.110000e-94 357
12 TraesCS7A01G406900 chr5D 91.221 262 21 2 200 460 209854928 209854668 3.990000e-94 355
13 TraesCS7A01G406900 chr3A 92.000 250 18 2 200 448 564424831 564425079 1.860000e-92 350
14 TraesCS7A01G406900 chr1A 79.885 348 54 8 1646 1985 21675568 21675229 1.170000e-59 241
15 TraesCS7A01G406900 chr5A 74.271 583 120 16 1413 1994 627664574 627664021 5.470000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G406900 chr7A 592260691 592263944 3253 False 6010 6010 100.000000 1 3254 1 chr7A.!!$F1 3253
1 TraesCS7A01G406900 chr7D 517553624 517556416 2792 False 3373 3373 88.862000 459 3231 1 chr7D.!!$F1 2772
2 TraesCS7A01G406900 chr7B 550656247 550659041 2794 False 1142 2494 87.871333 466 3254 3 chr7B.!!$F1 2788
3 TraesCS7A01G406900 chr5A 627664021 627664574 553 True 219 219 74.271000 1413 1994 1 chr5A.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 930 0.179056 CATTTGGGATAGCCGGACGT 60.179 55.0 5.05 0.0 33.83 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2412 2542 0.652592 AAAATCGATTCTCGCAGGCG 59.347 50.0 11.83 7.46 40.21 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.537795 ATCCCCCAGATGGATTTGATG 57.462 47.619 0.00 0.00 39.64 3.07
24 25 2.501667 TCCCCCAGATGGATTTGATGA 58.498 47.619 0.00 0.00 37.39 2.92
25 26 2.444388 TCCCCCAGATGGATTTGATGAG 59.556 50.000 0.00 0.00 37.39 2.90
26 27 2.236766 CCCCAGATGGATTTGATGAGC 58.763 52.381 0.00 0.00 37.39 4.26
27 28 2.236766 CCCAGATGGATTTGATGAGCC 58.763 52.381 0.00 0.00 37.39 4.70
28 29 2.423803 CCCAGATGGATTTGATGAGCCA 60.424 50.000 0.00 0.00 37.39 4.75
29 30 3.497332 CCAGATGGATTTGATGAGCCAT 58.503 45.455 0.00 0.00 43.46 4.40
30 31 3.255888 CCAGATGGATTTGATGAGCCATG 59.744 47.826 0.00 0.00 41.00 3.66
31 32 3.889538 CAGATGGATTTGATGAGCCATGT 59.110 43.478 0.00 0.00 41.00 3.21
32 33 4.341235 CAGATGGATTTGATGAGCCATGTT 59.659 41.667 0.00 0.00 41.00 2.71
33 34 4.341235 AGATGGATTTGATGAGCCATGTTG 59.659 41.667 0.00 0.00 41.00 3.33
34 35 2.761767 TGGATTTGATGAGCCATGTTGG 59.238 45.455 0.00 0.00 41.55 3.77
35 36 3.025978 GGATTTGATGAGCCATGTTGGA 58.974 45.455 0.00 0.00 40.96 3.53
36 37 3.640029 GGATTTGATGAGCCATGTTGGAT 59.360 43.478 0.00 0.00 39.95 3.41
37 38 4.500887 GGATTTGATGAGCCATGTTGGATG 60.501 45.833 0.00 0.00 35.51 3.51
38 39 2.061509 TGATGAGCCATGTTGGATGG 57.938 50.000 0.00 0.00 35.51 3.51
39 40 1.285667 TGATGAGCCATGTTGGATGGT 59.714 47.619 0.00 0.00 35.51 3.55
40 41 2.291735 TGATGAGCCATGTTGGATGGTT 60.292 45.455 0.00 0.00 35.51 3.67
41 42 3.053768 TGATGAGCCATGTTGGATGGTTA 60.054 43.478 0.00 0.00 35.51 2.85
42 43 3.448093 TGAGCCATGTTGGATGGTTAA 57.552 42.857 0.00 0.00 35.51 2.01
43 44 3.772387 TGAGCCATGTTGGATGGTTAAA 58.228 40.909 0.00 0.00 35.51 1.52
44 45 4.352009 TGAGCCATGTTGGATGGTTAAAT 58.648 39.130 0.00 0.00 35.51 1.40
45 46 4.160065 TGAGCCATGTTGGATGGTTAAATG 59.840 41.667 0.00 0.00 35.51 2.32
46 47 4.095946 AGCCATGTTGGATGGTTAAATGT 58.904 39.130 0.00 0.00 40.96 2.71
47 48 4.081531 AGCCATGTTGGATGGTTAAATGTG 60.082 41.667 0.00 0.00 40.96 3.21
48 49 4.322650 GCCATGTTGGATGGTTAAATGTGT 60.323 41.667 0.00 0.00 40.96 3.72
49 50 5.410067 CCATGTTGGATGGTTAAATGTGTC 58.590 41.667 0.00 0.00 40.96 3.67
50 51 5.185635 CCATGTTGGATGGTTAAATGTGTCT 59.814 40.000 0.00 0.00 40.96 3.41
51 52 5.703978 TGTTGGATGGTTAAATGTGTCTG 57.296 39.130 0.00 0.00 0.00 3.51
52 53 5.380900 TGTTGGATGGTTAAATGTGTCTGA 58.619 37.500 0.00 0.00 0.00 3.27
53 54 5.830457 TGTTGGATGGTTAAATGTGTCTGAA 59.170 36.000 0.00 0.00 0.00 3.02
54 55 5.957842 TGGATGGTTAAATGTGTCTGAAC 57.042 39.130 0.00 0.00 0.00 3.18
55 56 4.764823 TGGATGGTTAAATGTGTCTGAACC 59.235 41.667 0.00 0.00 40.04 3.62
56 57 4.142687 GGATGGTTAAATGTGTCTGAACCG 60.143 45.833 0.00 0.00 42.08 4.44
57 58 3.811083 TGGTTAAATGTGTCTGAACCGT 58.189 40.909 0.00 0.00 42.08 4.83
58 59 3.810941 TGGTTAAATGTGTCTGAACCGTC 59.189 43.478 0.00 0.00 42.08 4.79
59 60 3.187842 GGTTAAATGTGTCTGAACCGTCC 59.812 47.826 0.00 0.00 30.94 4.79
60 61 2.631160 AAATGTGTCTGAACCGTCCA 57.369 45.000 0.00 0.00 0.00 4.02
61 62 2.631160 AATGTGTCTGAACCGTCCAA 57.369 45.000 0.00 0.00 0.00 3.53
62 63 2.859165 ATGTGTCTGAACCGTCCAAT 57.141 45.000 0.00 0.00 0.00 3.16
63 64 2.163818 TGTGTCTGAACCGTCCAATC 57.836 50.000 0.00 0.00 0.00 2.67
64 65 1.270625 TGTGTCTGAACCGTCCAATCC 60.271 52.381 0.00 0.00 0.00 3.01
65 66 1.052617 TGTCTGAACCGTCCAATCCA 58.947 50.000 0.00 0.00 0.00 3.41
66 67 1.418264 TGTCTGAACCGTCCAATCCAA 59.582 47.619 0.00 0.00 0.00 3.53
67 68 2.158740 TGTCTGAACCGTCCAATCCAAA 60.159 45.455 0.00 0.00 0.00 3.28
68 69 2.225727 GTCTGAACCGTCCAATCCAAAC 59.774 50.000 0.00 0.00 0.00 2.93
69 70 2.158740 TCTGAACCGTCCAATCCAAACA 60.159 45.455 0.00 0.00 0.00 2.83
70 71 2.819608 CTGAACCGTCCAATCCAAACAT 59.180 45.455 0.00 0.00 0.00 2.71
71 72 3.226777 TGAACCGTCCAATCCAAACATT 58.773 40.909 0.00 0.00 0.00 2.71
72 73 3.639094 TGAACCGTCCAATCCAAACATTT 59.361 39.130 0.00 0.00 0.00 2.32
73 74 4.827835 TGAACCGTCCAATCCAAACATTTA 59.172 37.500 0.00 0.00 0.00 1.40
74 75 4.776795 ACCGTCCAATCCAAACATTTAC 57.223 40.909 0.00 0.00 0.00 2.01
75 76 3.508402 ACCGTCCAATCCAAACATTTACC 59.492 43.478 0.00 0.00 0.00 2.85
76 77 3.426963 CCGTCCAATCCAAACATTTACCG 60.427 47.826 0.00 0.00 0.00 4.02
77 78 3.426963 CGTCCAATCCAAACATTTACCGG 60.427 47.826 0.00 0.00 0.00 5.28
78 79 3.759618 GTCCAATCCAAACATTTACCGGA 59.240 43.478 9.46 0.00 0.00 5.14
79 80 4.013728 TCCAATCCAAACATTTACCGGAG 58.986 43.478 9.46 0.00 0.00 4.63
94 95 2.354109 CGGAGGTATGATGATCCACG 57.646 55.000 0.00 0.00 0.00 4.94
95 96 1.613925 CGGAGGTATGATGATCCACGT 59.386 52.381 0.00 0.00 0.00 4.49
96 97 2.035961 CGGAGGTATGATGATCCACGTT 59.964 50.000 0.00 0.00 0.00 3.99
97 98 3.393800 GGAGGTATGATGATCCACGTTG 58.606 50.000 0.00 0.00 0.00 4.10
98 99 3.393800 GAGGTATGATGATCCACGTTGG 58.606 50.000 0.00 0.00 39.43 3.77
106 107 4.909678 TCCACGTTGGAAATGCCA 57.090 50.000 4.51 0.00 45.00 4.92
117 118 4.963318 TGGAAATGCCATTAACCAACAA 57.037 36.364 11.96 0.00 43.33 2.83
118 119 4.636249 TGGAAATGCCATTAACCAACAAC 58.364 39.130 11.96 0.00 43.33 3.32
119 120 4.101585 TGGAAATGCCATTAACCAACAACA 59.898 37.500 11.96 0.00 43.33 3.33
120 121 4.690280 GGAAATGCCATTAACCAACAACAG 59.310 41.667 8.17 0.00 36.34 3.16
121 122 4.953940 AATGCCATTAACCAACAACAGT 57.046 36.364 0.00 0.00 0.00 3.55
122 123 6.412362 AAATGCCATTAACCAACAACAGTA 57.588 33.333 0.00 0.00 0.00 2.74
123 124 5.643379 ATGCCATTAACCAACAACAGTAG 57.357 39.130 0.00 0.00 0.00 2.57
124 125 3.254657 TGCCATTAACCAACAACAGTAGC 59.745 43.478 0.00 0.00 0.00 3.58
125 126 3.254657 GCCATTAACCAACAACAGTAGCA 59.745 43.478 0.00 0.00 0.00 3.49
126 127 4.794169 CCATTAACCAACAACAGTAGCAC 58.206 43.478 0.00 0.00 0.00 4.40
127 128 4.277174 CCATTAACCAACAACAGTAGCACA 59.723 41.667 0.00 0.00 0.00 4.57
128 129 5.048083 CCATTAACCAACAACAGTAGCACAT 60.048 40.000 0.00 0.00 0.00 3.21
129 130 3.988379 AACCAACAACAGTAGCACATG 57.012 42.857 0.00 0.00 0.00 3.21
130 131 2.930950 ACCAACAACAGTAGCACATGT 58.069 42.857 0.00 0.00 0.00 3.21
131 132 4.079980 ACCAACAACAGTAGCACATGTA 57.920 40.909 0.00 0.00 0.00 2.29
132 133 4.651778 ACCAACAACAGTAGCACATGTAT 58.348 39.130 0.00 0.00 0.00 2.29
133 134 4.695455 ACCAACAACAGTAGCACATGTATC 59.305 41.667 0.00 0.00 0.00 2.24
134 135 4.937620 CCAACAACAGTAGCACATGTATCT 59.062 41.667 0.00 1.18 0.00 1.98
135 136 6.106003 CCAACAACAGTAGCACATGTATCTA 58.894 40.000 0.00 0.11 0.00 1.98
136 137 6.256539 CCAACAACAGTAGCACATGTATCTAG 59.743 42.308 0.00 0.00 0.00 2.43
137 138 5.907207 ACAACAGTAGCACATGTATCTAGG 58.093 41.667 0.00 1.89 0.00 3.02
138 139 5.656859 ACAACAGTAGCACATGTATCTAGGA 59.343 40.000 0.00 0.00 0.00 2.94
139 140 5.776173 ACAGTAGCACATGTATCTAGGAC 57.224 43.478 0.00 0.00 0.00 3.85
140 141 5.450453 ACAGTAGCACATGTATCTAGGACT 58.550 41.667 0.00 0.00 0.00 3.85
141 142 5.894393 ACAGTAGCACATGTATCTAGGACTT 59.106 40.000 0.00 0.00 0.00 3.01
142 143 6.381420 ACAGTAGCACATGTATCTAGGACTTT 59.619 38.462 0.00 0.00 0.00 2.66
143 144 6.920758 CAGTAGCACATGTATCTAGGACTTTC 59.079 42.308 0.00 0.00 0.00 2.62
144 145 6.836527 AGTAGCACATGTATCTAGGACTTTCT 59.163 38.462 0.00 0.00 0.00 2.52
145 146 6.552445 AGCACATGTATCTAGGACTTTCTT 57.448 37.500 0.00 0.00 0.00 2.52
146 147 6.951971 AGCACATGTATCTAGGACTTTCTTT 58.048 36.000 0.00 0.00 0.00 2.52
147 148 7.398024 AGCACATGTATCTAGGACTTTCTTTT 58.602 34.615 0.00 0.00 0.00 2.27
148 149 8.540388 AGCACATGTATCTAGGACTTTCTTTTA 58.460 33.333 0.00 0.00 0.00 1.52
149 150 9.162764 GCACATGTATCTAGGACTTTCTTTTAA 57.837 33.333 0.00 0.00 0.00 1.52
183 184 4.795970 CTTATCAAGCATACACGGTTCC 57.204 45.455 0.00 0.00 0.00 3.62
184 185 1.651987 ATCAAGCATACACGGTTCCG 58.348 50.000 9.81 9.81 0.00 4.30
185 186 0.319083 TCAAGCATACACGGTTCCGT 59.681 50.000 11.27 11.27 43.93 4.69
186 187 0.719465 CAAGCATACACGGTTCCGTC 59.281 55.000 14.16 3.10 40.97 4.79
187 188 0.390735 AAGCATACACGGTTCCGTCC 60.391 55.000 14.16 1.49 40.97 4.79
188 189 1.217244 GCATACACGGTTCCGTCCT 59.783 57.895 14.16 5.26 40.97 3.85
189 190 0.804933 GCATACACGGTTCCGTCCTC 60.805 60.000 14.16 0.00 40.97 3.71
190 191 0.179119 CATACACGGTTCCGTCCTCC 60.179 60.000 14.16 0.00 40.97 4.30
191 192 0.612732 ATACACGGTTCCGTCCTCCA 60.613 55.000 14.16 0.00 40.97 3.86
192 193 0.827089 TACACGGTTCCGTCCTCCAA 60.827 55.000 14.16 0.00 40.97 3.53
193 194 1.070105 CACGGTTCCGTCCTCCAAA 59.930 57.895 14.16 0.00 40.97 3.28
194 195 0.533308 CACGGTTCCGTCCTCCAAAA 60.533 55.000 14.16 0.00 40.97 2.44
195 196 0.180878 ACGGTTCCGTCCTCCAAAAA 59.819 50.000 11.27 0.00 38.35 1.94
196 197 1.202842 ACGGTTCCGTCCTCCAAAAAT 60.203 47.619 11.27 0.00 38.35 1.82
197 198 1.199097 CGGTTCCGTCCTCCAAAAATG 59.801 52.381 2.82 0.00 0.00 2.32
198 199 2.510613 GGTTCCGTCCTCCAAAAATGA 58.489 47.619 0.00 0.00 0.00 2.57
199 200 3.089284 GGTTCCGTCCTCCAAAAATGAT 58.911 45.455 0.00 0.00 0.00 2.45
200 201 4.266714 GGTTCCGTCCTCCAAAAATGATA 58.733 43.478 0.00 0.00 0.00 2.15
201 202 4.095932 GGTTCCGTCCTCCAAAAATGATAC 59.904 45.833 0.00 0.00 0.00 2.24
202 203 4.837093 TCCGTCCTCCAAAAATGATACT 57.163 40.909 0.00 0.00 0.00 2.12
203 204 5.174037 TCCGTCCTCCAAAAATGATACTT 57.826 39.130 0.00 0.00 0.00 2.24
204 205 5.183228 TCCGTCCTCCAAAAATGATACTTC 58.817 41.667 0.00 0.00 0.00 3.01
205 206 4.335594 CCGTCCTCCAAAAATGATACTTCC 59.664 45.833 0.00 0.00 0.00 3.46
206 207 5.186198 CGTCCTCCAAAAATGATACTTCCT 58.814 41.667 0.00 0.00 0.00 3.36
207 208 5.294552 CGTCCTCCAAAAATGATACTTCCTC 59.705 44.000 0.00 0.00 0.00 3.71
208 209 6.418946 GTCCTCCAAAAATGATACTTCCTCT 58.581 40.000 0.00 0.00 0.00 3.69
209 210 6.317391 GTCCTCCAAAAATGATACTTCCTCTG 59.683 42.308 0.00 0.00 0.00 3.35
210 211 5.591877 CCTCCAAAAATGATACTTCCTCTGG 59.408 44.000 0.00 0.00 0.00 3.86
211 212 6.139679 TCCAAAAATGATACTTCCTCTGGT 57.860 37.500 0.00 0.00 0.00 4.00
212 213 6.180472 TCCAAAAATGATACTTCCTCTGGTC 58.820 40.000 0.00 0.00 0.00 4.02
213 214 6.012508 TCCAAAAATGATACTTCCTCTGGTCT 60.013 38.462 0.00 0.00 0.00 3.85
214 215 6.660949 CCAAAAATGATACTTCCTCTGGTCTT 59.339 38.462 0.00 0.00 0.00 3.01
215 216 7.177392 CCAAAAATGATACTTCCTCTGGTCTTT 59.823 37.037 0.00 0.00 0.00 2.52
216 217 8.579863 CAAAAATGATACTTCCTCTGGTCTTTT 58.420 33.333 0.00 0.00 0.00 2.27
217 218 8.712228 AAAATGATACTTCCTCTGGTCTTTTT 57.288 30.769 0.00 0.00 0.00 1.94
247 248 9.952188 TCAGTATATAAGAATTGTCTGAAGTCG 57.048 33.333 0.00 0.00 33.05 4.18
248 249 9.952188 CAGTATATAAGAATTGTCTGAAGTCGA 57.048 33.333 0.00 0.00 33.05 4.20
252 253 7.820044 ATAAGAATTGTCTGAAGTCGAACTC 57.180 36.000 0.00 0.00 33.05 3.01
253 254 5.461032 AGAATTGTCTGAAGTCGAACTCT 57.539 39.130 0.00 0.00 30.83 3.24
254 255 6.576662 AGAATTGTCTGAAGTCGAACTCTA 57.423 37.500 0.00 0.00 30.83 2.43
255 256 6.383415 AGAATTGTCTGAAGTCGAACTCTAC 58.617 40.000 0.00 0.00 30.83 2.59
256 257 5.707242 ATTGTCTGAAGTCGAACTCTACA 57.293 39.130 0.00 0.00 0.00 2.74
257 258 5.509716 TTGTCTGAAGTCGAACTCTACAA 57.490 39.130 0.00 0.05 0.00 2.41
258 259 5.509716 TGTCTGAAGTCGAACTCTACAAA 57.490 39.130 0.00 0.00 0.00 2.83
259 260 5.520632 TGTCTGAAGTCGAACTCTACAAAG 58.479 41.667 0.00 0.00 0.00 2.77
260 261 5.067413 TGTCTGAAGTCGAACTCTACAAAGT 59.933 40.000 0.00 0.00 0.00 2.66
261 262 5.978322 GTCTGAAGTCGAACTCTACAAAGTT 59.022 40.000 0.00 0.00 42.10 2.66
262 263 6.476053 GTCTGAAGTCGAACTCTACAAAGTTT 59.524 38.462 0.00 0.00 39.55 2.66
263 264 6.475727 TCTGAAGTCGAACTCTACAAAGTTTG 59.524 38.462 14.13 14.13 39.55 2.93
264 265 6.334989 TGAAGTCGAACTCTACAAAGTTTGA 58.665 36.000 22.23 5.24 43.99 2.69
267 268 5.013568 TCGAACTCTACAAAGTTTGACCA 57.986 39.130 22.23 5.97 42.24 4.02
268 269 5.607477 TCGAACTCTACAAAGTTTGACCAT 58.393 37.500 22.23 2.18 42.24 3.55
269 270 6.751157 TCGAACTCTACAAAGTTTGACCATA 58.249 36.000 22.23 3.28 42.24 2.74
270 271 7.383687 TCGAACTCTACAAAGTTTGACCATAT 58.616 34.615 22.23 1.06 42.24 1.78
271 272 7.876068 TCGAACTCTACAAAGTTTGACCATATT 59.124 33.333 22.23 8.64 42.24 1.28
272 273 8.504005 CGAACTCTACAAAGTTTGACCATATTT 58.496 33.333 22.23 6.08 41.38 1.40
337 338 8.617809 ACAACATAAAACTTTAAGTCATGACGT 58.382 29.630 19.85 19.06 36.20 4.34
344 345 9.924650 AAAACTTTAAGTCATGACGTATCTACT 57.075 29.630 20.01 5.23 36.20 2.57
347 348 8.344098 ACTTTAAGTCATGACGTATCTACTAGC 58.656 37.037 20.01 0.00 36.20 3.42
348 349 7.797038 TTAAGTCATGACGTATCTACTAGCA 57.203 36.000 20.01 1.84 36.20 3.49
349 350 6.885952 AAGTCATGACGTATCTACTAGCAT 57.114 37.500 19.85 0.00 36.20 3.79
350 351 6.885952 AGTCATGACGTATCTACTAGCATT 57.114 37.500 19.85 0.00 36.20 3.56
351 352 7.981102 AGTCATGACGTATCTACTAGCATTA 57.019 36.000 19.85 0.00 36.20 1.90
352 353 8.392372 AGTCATGACGTATCTACTAGCATTAA 57.608 34.615 19.85 0.00 36.20 1.40
353 354 9.015367 AGTCATGACGTATCTACTAGCATTAAT 57.985 33.333 19.85 0.00 36.20 1.40
354 355 9.627395 GTCATGACGTATCTACTAGCATTAATT 57.373 33.333 10.69 0.00 0.00 1.40
358 359 9.459640 TGACGTATCTACTAGCATTAATTTCAC 57.540 33.333 0.00 0.00 0.00 3.18
359 360 9.459640 GACGTATCTACTAGCATTAATTTCACA 57.540 33.333 0.00 0.00 0.00 3.58
360 361 9.982651 ACGTATCTACTAGCATTAATTTCACAT 57.017 29.630 0.00 0.00 0.00 3.21
410 411 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
411 412 2.876550 GTTGGTCAAACTTTACGAGGCT 59.123 45.455 0.00 0.00 35.75 4.58
412 413 3.202829 TGGTCAAACTTTACGAGGCTT 57.797 42.857 0.00 0.00 0.00 4.35
413 414 2.875933 TGGTCAAACTTTACGAGGCTTG 59.124 45.455 0.00 0.00 0.00 4.01
414 415 3.135994 GGTCAAACTTTACGAGGCTTGA 58.864 45.455 9.20 0.00 32.24 3.02
415 416 3.059120 GGTCAAACTTTACGAGGCTTGAC 60.059 47.826 9.20 5.19 44.00 3.18
416 417 3.808174 GTCAAACTTTACGAGGCTTGACT 59.192 43.478 9.20 0.00 42.80 3.41
417 418 4.272748 GTCAAACTTTACGAGGCTTGACTT 59.727 41.667 9.20 0.00 42.80 3.01
418 419 5.464389 GTCAAACTTTACGAGGCTTGACTTA 59.536 40.000 9.20 0.00 42.80 2.24
419 420 5.694910 TCAAACTTTACGAGGCTTGACTTAG 59.305 40.000 9.20 2.94 30.70 2.18
420 421 5.464030 AACTTTACGAGGCTTGACTTAGA 57.536 39.130 9.20 0.00 0.00 2.10
421 422 4.807443 ACTTTACGAGGCTTGACTTAGAC 58.193 43.478 9.20 0.00 0.00 2.59
422 423 4.280174 ACTTTACGAGGCTTGACTTAGACA 59.720 41.667 9.20 0.00 0.00 3.41
423 424 4.859304 TTACGAGGCTTGACTTAGACAA 57.141 40.909 9.20 0.00 0.00 3.18
424 425 3.746045 ACGAGGCTTGACTTAGACAAA 57.254 42.857 9.20 0.00 0.00 2.83
425 426 4.273148 ACGAGGCTTGACTTAGACAAAT 57.727 40.909 9.20 0.00 0.00 2.32
426 427 4.246458 ACGAGGCTTGACTTAGACAAATC 58.754 43.478 9.20 0.00 0.00 2.17
427 428 4.021016 ACGAGGCTTGACTTAGACAAATCT 60.021 41.667 9.20 0.00 39.15 2.40
428 429 5.185249 ACGAGGCTTGACTTAGACAAATCTA 59.815 40.000 9.20 0.00 36.29 1.98
429 430 6.100004 CGAGGCTTGACTTAGACAAATCTAA 58.900 40.000 0.00 0.00 43.75 2.10
430 431 6.758886 CGAGGCTTGACTTAGACAAATCTAAT 59.241 38.462 0.00 0.00 44.64 1.73
431 432 7.278868 CGAGGCTTGACTTAGACAAATCTAATT 59.721 37.037 0.00 0.00 44.64 1.40
432 433 8.870075 AGGCTTGACTTAGACAAATCTAATTT 57.130 30.769 0.00 0.00 44.64 1.82
449 450 8.634475 ATCTAATTTGCGAAATAAAAAGGAGC 57.366 30.769 0.00 0.00 0.00 4.70
450 451 5.761818 AATTTGCGAAATAAAAAGGAGCG 57.238 34.783 0.00 0.00 0.00 5.03
451 452 2.911819 TGCGAAATAAAAAGGAGCGG 57.088 45.000 0.00 0.00 0.00 5.52
452 453 2.428491 TGCGAAATAAAAAGGAGCGGA 58.572 42.857 0.00 0.00 0.00 5.54
453 454 2.418628 TGCGAAATAAAAAGGAGCGGAG 59.581 45.455 0.00 0.00 0.00 4.63
454 455 2.223272 GCGAAATAAAAAGGAGCGGAGG 60.223 50.000 0.00 0.00 0.00 4.30
455 456 3.267483 CGAAATAAAAAGGAGCGGAGGA 58.733 45.455 0.00 0.00 0.00 3.71
456 457 3.687698 CGAAATAAAAAGGAGCGGAGGAA 59.312 43.478 0.00 0.00 0.00 3.36
457 458 4.201822 CGAAATAAAAAGGAGCGGAGGAAG 60.202 45.833 0.00 0.00 0.00 3.46
458 459 4.302559 AATAAAAAGGAGCGGAGGAAGT 57.697 40.909 0.00 0.00 0.00 3.01
459 460 5.431179 AATAAAAAGGAGCGGAGGAAGTA 57.569 39.130 0.00 0.00 0.00 2.24
460 461 5.632034 ATAAAAAGGAGCGGAGGAAGTAT 57.368 39.130 0.00 0.00 0.00 2.12
574 585 2.202479 GGGCCGTGTACGTACGTC 60.202 66.667 26.53 16.55 42.24 4.34
575 586 2.560861 GGCCGTGTACGTACGTCA 59.439 61.111 26.53 18.95 42.24 4.35
576 587 1.512734 GGCCGTGTACGTACGTCAG 60.513 63.158 26.53 13.98 42.24 3.51
577 588 2.148365 GCCGTGTACGTACGTCAGC 61.148 63.158 26.53 16.93 42.24 4.26
578 589 1.512734 CCGTGTACGTACGTCAGCC 60.513 63.158 26.53 11.86 42.24 4.85
579 590 1.207339 CGTGTACGTACGTCAGCCA 59.793 57.895 26.53 14.35 39.13 4.75
641 730 4.666253 GGCCTTGTCCTGCAGCCA 62.666 66.667 8.66 3.99 38.07 4.75
655 744 4.681978 GCCACAGGAACTCGCGGT 62.682 66.667 6.13 0.00 34.60 5.68
682 771 4.373116 AGACAACGCACCGCCGAT 62.373 61.111 0.00 0.00 0.00 4.18
766 855 4.671549 CACGCAACCGCACTGCTG 62.672 66.667 0.00 0.00 37.67 4.41
815 914 1.307866 ATCGTCCTCCACCCCCATT 60.308 57.895 0.00 0.00 0.00 3.16
829 928 3.021451 CCATTTGGGATAGCCGGAC 57.979 57.895 5.05 0.00 40.01 4.79
830 929 0.884704 CCATTTGGGATAGCCGGACG 60.885 60.000 5.05 0.00 40.01 4.79
831 930 0.179056 CATTTGGGATAGCCGGACGT 60.179 55.000 5.05 0.00 33.83 4.34
832 931 0.179056 ATTTGGGATAGCCGGACGTG 60.179 55.000 5.05 0.00 33.83 4.49
833 932 1.546589 TTTGGGATAGCCGGACGTGT 61.547 55.000 5.05 0.00 33.83 4.49
834 933 1.952102 TTGGGATAGCCGGACGTGTC 61.952 60.000 5.05 0.00 33.83 3.67
835 934 2.416260 GGATAGCCGGACGTGTCC 59.584 66.667 5.05 9.04 46.18 4.02
836 935 2.416260 GATAGCCGGACGTGTCCC 59.584 66.667 5.05 0.54 46.96 4.46
837 936 2.043248 ATAGCCGGACGTGTCCCT 60.043 61.111 5.05 8.05 46.96 4.20
838 937 2.073037 GATAGCCGGACGTGTCCCTC 62.073 65.000 5.05 5.42 46.96 4.30
889 988 2.637025 CGGATTAATTGCCGCCCG 59.363 61.111 2.95 0.20 41.17 6.13
968 1067 4.383861 GCCCAAGCAAGCAAGGCC 62.384 66.667 0.00 0.00 37.66 5.19
1224 1339 2.101965 CTCTGCCTCTCGACGCTG 59.898 66.667 0.00 0.00 0.00 5.18
1305 1420 2.434359 CCGCCGTTCTTGTCCCTC 60.434 66.667 0.00 0.00 0.00 4.30
1314 1429 1.215647 CTTGTCCCTCTACGCGCTT 59.784 57.895 5.73 0.00 0.00 4.68
1821 1936 1.341383 GGGAAGGTCTGCATGGTCAAT 60.341 52.381 0.00 0.00 0.00 2.57
2001 2116 3.387947 AACGCCTACGACTGGGGG 61.388 66.667 12.53 3.67 43.93 5.40
2261 2379 2.522193 CCCCGAGTAGGCCTCCTC 60.522 72.222 15.23 15.23 36.82 3.71
2262 2380 2.522193 CCCGAGTAGGCCTCCTCC 60.522 72.222 18.93 2.61 36.82 4.30
2263 2381 2.522193 CCGAGTAGGCCTCCTCCC 60.522 72.222 18.93 0.00 36.82 4.30
2264 2382 2.279073 CGAGTAGGCCTCCTCCCA 59.721 66.667 18.93 0.00 36.82 4.37
2333 2453 2.821810 GCTCTCCCTTTGGCTCGC 60.822 66.667 0.00 0.00 0.00 5.03
2355 2475 1.807573 CTCTTCTTCCTGCGGCGAC 60.808 63.158 12.98 2.02 0.00 5.19
2385 2515 1.942657 GCACGGTACTCCTATGTCGTA 59.057 52.381 0.00 0.00 0.00 3.43
2387 2517 3.201290 CACGGTACTCCTATGTCGTAGT 58.799 50.000 0.00 0.00 0.00 2.73
2388 2518 4.371786 CACGGTACTCCTATGTCGTAGTA 58.628 47.826 0.00 0.00 0.00 1.82
2389 2519 4.447054 CACGGTACTCCTATGTCGTAGTAG 59.553 50.000 0.00 0.00 0.00 2.57
2390 2520 4.100189 ACGGTACTCCTATGTCGTAGTAGT 59.900 45.833 3.15 3.15 34.39 2.73
2412 2542 9.032420 GTAGTAGTACATGTTCATTTTAGGAGC 57.968 37.037 2.30 0.00 0.00 4.70
2413 2543 6.757010 AGTAGTACATGTTCATTTTAGGAGCG 59.243 38.462 2.30 0.00 0.00 5.03
2414 2544 3.764885 ACATGTTCATTTTAGGAGCGC 57.235 42.857 0.00 0.00 0.00 5.92
2415 2545 2.423538 ACATGTTCATTTTAGGAGCGCC 59.576 45.455 2.29 0.00 0.00 6.53
2419 2549 1.089481 TCATTTTAGGAGCGCCTGCG 61.089 55.000 20.53 7.26 46.45 5.18
2442 2572 5.942872 GAGAATCGATTTTGGTTCATGTGT 58.057 37.500 12.81 0.00 0.00 3.72
2443 2573 6.331369 AGAATCGATTTTGGTTCATGTGTT 57.669 33.333 12.81 0.00 0.00 3.32
2451 2581 2.229792 TGGTTCATGTGTTCTTCTGCC 58.770 47.619 0.00 0.00 0.00 4.85
2523 2653 6.030228 CGCTAGATTTCCAGTTTTTGATTCC 58.970 40.000 0.00 0.00 0.00 3.01
2526 2656 7.094205 GCTAGATTTCCAGTTTTTGATTCCTGA 60.094 37.037 0.00 0.00 0.00 3.86
2527 2657 7.787623 AGATTTCCAGTTTTTGATTCCTGAT 57.212 32.000 0.00 0.00 0.00 2.90
2537 2667 8.139989 AGTTTTTGATTCCTGATTTCTTCTGTG 58.860 33.333 0.00 0.00 0.00 3.66
2566 2696 4.217510 CTCTGATCCTCTCTGTCCAGATT 58.782 47.826 0.00 0.00 36.76 2.40
2570 2700 2.259917 TCCTCTCTGTCCAGATTGCAA 58.740 47.619 0.00 0.00 36.76 4.08
2571 2701 2.235650 TCCTCTCTGTCCAGATTGCAAG 59.764 50.000 4.94 0.00 36.76 4.01
2572 2702 2.630158 CTCTCTGTCCAGATTGCAAGG 58.370 52.381 4.94 0.35 36.76 3.61
2573 2703 1.280133 TCTCTGTCCAGATTGCAAGGG 59.720 52.381 4.94 6.77 36.76 3.95
2591 2721 3.309296 AGGGAAAGCAGGATTCGAGATA 58.691 45.455 0.00 0.00 0.00 1.98
2627 2759 9.756571 TCCTTTTCTTTCAGAGATACTACTACT 57.243 33.333 0.00 0.00 33.49 2.57
2636 2768 5.008217 CAGAGATACTACTACTCCAGCACAC 59.992 48.000 0.00 0.00 0.00 3.82
2639 2771 1.540267 ACTACTACTCCAGCACACACG 59.460 52.381 0.00 0.00 0.00 4.49
2662 2794 2.631384 TGGGAAGGGAACTGAATGAGA 58.369 47.619 0.00 0.00 42.68 3.27
2666 2798 4.202409 GGGAAGGGAACTGAATGAGATAGG 60.202 50.000 0.00 0.00 42.68 2.57
2679 2811 6.488006 TGAATGAGATAGGCTGCTAATTTTCC 59.512 38.462 0.00 0.00 0.00 3.13
2680 2812 4.718961 TGAGATAGGCTGCTAATTTTCCC 58.281 43.478 0.00 0.00 0.00 3.97
2685 2817 7.001073 AGATAGGCTGCTAATTTTCCCTTAAG 58.999 38.462 0.00 0.00 0.00 1.85
2690 2822 4.421131 TGCTAATTTTCCCTTAAGCCCAA 58.579 39.130 0.00 0.00 0.00 4.12
2694 2826 2.543037 TTTCCCTTAAGCCCAATCCC 57.457 50.000 0.00 0.00 0.00 3.85
2700 2832 3.055167 CCCTTAAGCCCAATCCCTTTTTG 60.055 47.826 0.00 0.00 0.00 2.44
2701 2833 3.582647 CCTTAAGCCCAATCCCTTTTTGT 59.417 43.478 0.00 0.00 0.00 2.83
2708 2840 3.057526 CCCAATCCCTTTTTGTTCTCGAC 60.058 47.826 0.00 0.00 0.00 4.20
2738 2870 2.375146 AGATCCGTTAAACCCAATGCC 58.625 47.619 0.00 0.00 0.00 4.40
2741 2873 1.153920 CGTTAAACCCAATGCCGGC 60.154 57.895 22.73 22.73 0.00 6.13
2745 2877 2.433646 TAAACCCAATGCCGGCACCT 62.434 55.000 35.50 20.23 0.00 4.00
2761 2893 2.320587 CCTTGCGTCGCTTTGAGCT 61.321 57.895 19.50 0.00 39.60 4.09
2823 2979 2.666862 CGCCACGCAAACCTGGTA 60.667 61.111 0.00 0.00 0.00 3.25
2824 2980 2.951458 GCCACGCAAACCTGGTAC 59.049 61.111 0.00 0.00 0.00 3.34
2937 3093 3.138930 ATCGCCACGTCCCATCGAG 62.139 63.158 0.00 0.00 32.50 4.04
2981 3151 2.606272 GCCGTTACCTCCTCAATTAACG 59.394 50.000 5.90 5.90 44.01 3.18
2983 3153 3.255725 CGTTACCTCCTCAATTAACGCA 58.744 45.455 0.00 0.00 40.04 5.24
2990 3160 0.179200 CTCAATTAACGCACGTGCCC 60.179 55.000 33.23 9.10 37.91 5.36
2991 3161 0.604243 TCAATTAACGCACGTGCCCT 60.604 50.000 33.23 22.55 37.91 5.19
2993 3163 0.321298 AATTAACGCACGTGCCCTCT 60.321 50.000 33.23 17.62 37.91 3.69
2994 3164 0.739813 ATTAACGCACGTGCCCTCTC 60.740 55.000 33.23 6.74 37.91 3.20
2995 3165 2.775032 TTAACGCACGTGCCCTCTCC 62.775 60.000 33.23 5.97 37.91 3.71
3003 3191 3.147595 TGCCCTCTCCGGATCACG 61.148 66.667 3.57 0.00 43.80 4.35
3057 3245 2.278857 CCGCGGACGATTCTCCTG 60.279 66.667 24.07 0.00 43.93 3.86
3202 3391 0.917333 TTCCCTCGGGGCCAAGTAAT 60.917 55.000 4.39 0.00 43.94 1.89
3203 3392 1.152963 CCCTCGGGGCCAAGTAATG 60.153 63.158 4.39 0.00 35.35 1.90
3211 3400 2.044451 CCAAGTAATGGCGGGGCA 60.044 61.111 0.00 0.00 43.80 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.444388 CTCATCAAATCCATCTGGGGGA 59.556 50.000 0.00 0.00 39.14 4.81
5 6 2.872732 CTCATCAAATCCATCTGGGGG 58.127 52.381 0.00 0.00 37.22 5.40
6 7 2.236766 GCTCATCAAATCCATCTGGGG 58.763 52.381 0.00 0.00 37.22 4.96
7 8 2.236766 GGCTCATCAAATCCATCTGGG 58.763 52.381 0.00 0.00 35.41 4.45
8 9 2.940158 TGGCTCATCAAATCCATCTGG 58.060 47.619 0.00 0.00 0.00 3.86
9 10 3.889538 ACATGGCTCATCAAATCCATCTG 59.110 43.478 0.00 0.00 37.22 2.90
10 11 4.180377 ACATGGCTCATCAAATCCATCT 57.820 40.909 0.00 0.00 37.22 2.90
11 12 4.500887 CCAACATGGCTCATCAAATCCATC 60.501 45.833 0.00 0.00 37.22 3.51
12 13 3.386726 CCAACATGGCTCATCAAATCCAT 59.613 43.478 0.00 0.00 39.72 3.41
13 14 2.761767 CCAACATGGCTCATCAAATCCA 59.238 45.455 0.00 0.00 0.00 3.41
14 15 3.025978 TCCAACATGGCTCATCAAATCC 58.974 45.455 0.00 0.00 37.47 3.01
15 16 4.500887 CCATCCAACATGGCTCATCAAATC 60.501 45.833 0.00 0.00 37.47 2.17
16 17 3.386726 CCATCCAACATGGCTCATCAAAT 59.613 43.478 0.00 0.00 37.47 2.32
17 18 2.761767 CCATCCAACATGGCTCATCAAA 59.238 45.455 0.00 0.00 37.47 2.69
18 19 2.291735 ACCATCCAACATGGCTCATCAA 60.292 45.455 0.00 0.00 42.82 2.57
19 20 1.285667 ACCATCCAACATGGCTCATCA 59.714 47.619 0.00 0.00 42.82 3.07
20 21 2.062971 ACCATCCAACATGGCTCATC 57.937 50.000 0.00 0.00 42.82 2.92
21 22 2.537633 AACCATCCAACATGGCTCAT 57.462 45.000 0.00 0.00 42.82 2.90
22 23 3.448093 TTAACCATCCAACATGGCTCA 57.552 42.857 0.00 0.00 42.82 4.26
23 24 4.160252 ACATTTAACCATCCAACATGGCTC 59.840 41.667 0.00 0.00 42.82 4.70
24 25 4.081531 CACATTTAACCATCCAACATGGCT 60.082 41.667 0.00 0.00 42.82 4.75
25 26 4.183101 CACATTTAACCATCCAACATGGC 58.817 43.478 0.00 0.00 42.82 4.40
26 27 5.185635 AGACACATTTAACCATCCAACATGG 59.814 40.000 0.00 0.00 44.54 3.66
27 28 6.072008 TCAGACACATTTAACCATCCAACATG 60.072 38.462 0.00 0.00 0.00 3.21
28 29 6.009589 TCAGACACATTTAACCATCCAACAT 58.990 36.000 0.00 0.00 0.00 2.71
29 30 5.380900 TCAGACACATTTAACCATCCAACA 58.619 37.500 0.00 0.00 0.00 3.33
30 31 5.957842 TCAGACACATTTAACCATCCAAC 57.042 39.130 0.00 0.00 0.00 3.77
31 32 5.242838 GGTTCAGACACATTTAACCATCCAA 59.757 40.000 0.00 0.00 39.51 3.53
32 33 4.764823 GGTTCAGACACATTTAACCATCCA 59.235 41.667 0.00 0.00 39.51 3.41
33 34 4.142687 CGGTTCAGACACATTTAACCATCC 60.143 45.833 0.00 0.00 39.66 3.51
34 35 4.454504 ACGGTTCAGACACATTTAACCATC 59.545 41.667 0.00 0.00 39.66 3.51
35 36 4.394729 ACGGTTCAGACACATTTAACCAT 58.605 39.130 0.00 0.00 39.66 3.55
36 37 3.810941 GACGGTTCAGACACATTTAACCA 59.189 43.478 0.00 0.00 39.66 3.67
37 38 3.187842 GGACGGTTCAGACACATTTAACC 59.812 47.826 0.00 0.00 36.95 2.85
38 39 3.810941 TGGACGGTTCAGACACATTTAAC 59.189 43.478 0.00 0.00 0.00 2.01
39 40 4.074627 TGGACGGTTCAGACACATTTAA 57.925 40.909 0.00 0.00 0.00 1.52
40 41 3.755112 TGGACGGTTCAGACACATTTA 57.245 42.857 0.00 0.00 0.00 1.40
41 42 2.631160 TGGACGGTTCAGACACATTT 57.369 45.000 0.00 0.00 0.00 2.32
42 43 2.631160 TTGGACGGTTCAGACACATT 57.369 45.000 0.00 0.00 0.00 2.71
43 44 2.615493 GGATTGGACGGTTCAGACACAT 60.615 50.000 0.00 0.00 0.00 3.21
44 45 1.270625 GGATTGGACGGTTCAGACACA 60.271 52.381 0.00 0.00 0.00 3.72
45 46 1.270625 TGGATTGGACGGTTCAGACAC 60.271 52.381 0.00 0.00 0.00 3.67
46 47 1.052617 TGGATTGGACGGTTCAGACA 58.947 50.000 0.00 0.00 0.00 3.41
47 48 2.178912 TTGGATTGGACGGTTCAGAC 57.821 50.000 0.00 0.00 0.00 3.51
48 49 2.158740 TGTTTGGATTGGACGGTTCAGA 60.159 45.455 0.00 0.00 0.00 3.27
49 50 2.226330 TGTTTGGATTGGACGGTTCAG 58.774 47.619 0.00 0.00 0.00 3.02
50 51 2.350057 TGTTTGGATTGGACGGTTCA 57.650 45.000 0.00 0.00 0.00 3.18
51 52 3.934457 AATGTTTGGATTGGACGGTTC 57.066 42.857 0.00 0.00 0.00 3.62
52 53 4.021807 GGTAAATGTTTGGATTGGACGGTT 60.022 41.667 0.00 0.00 0.00 4.44
53 54 3.508402 GGTAAATGTTTGGATTGGACGGT 59.492 43.478 0.00 0.00 0.00 4.83
54 55 3.426963 CGGTAAATGTTTGGATTGGACGG 60.427 47.826 0.00 0.00 0.00 4.79
55 56 3.426963 CCGGTAAATGTTTGGATTGGACG 60.427 47.826 0.00 0.00 0.00 4.79
56 57 3.759618 TCCGGTAAATGTTTGGATTGGAC 59.240 43.478 0.00 0.00 0.00 4.02
57 58 4.013728 CTCCGGTAAATGTTTGGATTGGA 58.986 43.478 0.00 0.00 0.00 3.53
58 59 3.130340 CCTCCGGTAAATGTTTGGATTGG 59.870 47.826 0.00 0.00 0.00 3.16
59 60 3.761752 ACCTCCGGTAAATGTTTGGATTG 59.238 43.478 0.00 0.00 32.11 2.67
60 61 4.042271 ACCTCCGGTAAATGTTTGGATT 57.958 40.909 0.00 0.00 32.11 3.01
61 62 3.732048 ACCTCCGGTAAATGTTTGGAT 57.268 42.857 0.00 0.00 32.11 3.41
62 63 4.225492 TCATACCTCCGGTAAATGTTTGGA 59.775 41.667 0.00 0.00 41.85 3.53
63 64 4.519213 TCATACCTCCGGTAAATGTTTGG 58.481 43.478 0.00 0.00 41.85 3.28
64 65 5.820423 TCATCATACCTCCGGTAAATGTTTG 59.180 40.000 0.00 5.15 41.85 2.93
65 66 5.996644 TCATCATACCTCCGGTAAATGTTT 58.003 37.500 0.00 0.00 41.85 2.83
66 67 5.623956 TCATCATACCTCCGGTAAATGTT 57.376 39.130 0.00 0.00 41.85 2.71
67 68 5.280011 GGATCATCATACCTCCGGTAAATGT 60.280 44.000 0.00 0.00 41.85 2.71
68 69 5.178797 GGATCATCATACCTCCGGTAAATG 58.821 45.833 0.00 1.88 41.85 2.32
69 70 4.844085 TGGATCATCATACCTCCGGTAAAT 59.156 41.667 0.00 0.00 41.85 1.40
70 71 4.039973 GTGGATCATCATACCTCCGGTAAA 59.960 45.833 0.00 0.00 41.85 2.01
71 72 3.576982 GTGGATCATCATACCTCCGGTAA 59.423 47.826 0.00 0.00 41.85 2.85
72 73 3.162666 GTGGATCATCATACCTCCGGTA 58.837 50.000 0.00 0.00 42.80 4.02
73 74 1.971357 GTGGATCATCATACCTCCGGT 59.029 52.381 0.00 0.00 40.16 5.28
74 75 1.067565 CGTGGATCATCATACCTCCGG 60.068 57.143 0.00 0.00 0.00 5.14
75 76 1.613925 ACGTGGATCATCATACCTCCG 59.386 52.381 0.00 0.00 0.00 4.63
76 77 3.393800 CAACGTGGATCATCATACCTCC 58.606 50.000 0.00 0.00 0.00 4.30
77 78 3.069586 TCCAACGTGGATCATCATACCTC 59.930 47.826 0.00 0.00 42.67 3.85
78 79 3.038280 TCCAACGTGGATCATCATACCT 58.962 45.455 0.00 0.00 42.67 3.08
79 80 3.469008 TCCAACGTGGATCATCATACC 57.531 47.619 0.00 0.00 42.67 2.73
89 90 4.909678 TGGCATTTCCAACGTGGA 57.090 50.000 0.00 0.00 46.61 4.02
97 98 4.636249 TGTTGTTGGTTAATGGCATTTCC 58.364 39.130 19.21 19.73 0.00 3.13
98 99 5.296748 ACTGTTGTTGGTTAATGGCATTTC 58.703 37.500 19.21 11.68 0.00 2.17
99 100 5.289083 ACTGTTGTTGGTTAATGGCATTT 57.711 34.783 19.21 2.74 0.00 2.32
100 101 4.953940 ACTGTTGTTGGTTAATGGCATT 57.046 36.364 18.01 18.01 0.00 3.56
101 102 4.082245 GCTACTGTTGTTGGTTAATGGCAT 60.082 41.667 0.00 0.00 0.00 4.40
102 103 3.254657 GCTACTGTTGTTGGTTAATGGCA 59.745 43.478 0.00 0.00 0.00 4.92
103 104 3.254657 TGCTACTGTTGTTGGTTAATGGC 59.745 43.478 0.00 0.00 0.00 4.40
104 105 4.277174 TGTGCTACTGTTGTTGGTTAATGG 59.723 41.667 0.00 0.00 0.00 3.16
105 106 5.431420 TGTGCTACTGTTGTTGGTTAATG 57.569 39.130 0.00 0.00 0.00 1.90
106 107 5.534654 ACATGTGCTACTGTTGTTGGTTAAT 59.465 36.000 0.00 0.00 0.00 1.40
107 108 4.884744 ACATGTGCTACTGTTGTTGGTTAA 59.115 37.500 0.00 0.00 0.00 2.01
108 109 4.456535 ACATGTGCTACTGTTGTTGGTTA 58.543 39.130 0.00 0.00 0.00 2.85
109 110 3.287222 ACATGTGCTACTGTTGTTGGTT 58.713 40.909 0.00 0.00 0.00 3.67
110 111 2.930950 ACATGTGCTACTGTTGTTGGT 58.069 42.857 0.00 0.00 0.00 3.67
111 112 4.937620 AGATACATGTGCTACTGTTGTTGG 59.062 41.667 9.11 0.00 0.00 3.77
112 113 6.256539 CCTAGATACATGTGCTACTGTTGTTG 59.743 42.308 9.11 0.00 0.00 3.33
113 114 6.154534 TCCTAGATACATGTGCTACTGTTGTT 59.845 38.462 9.11 0.00 0.00 2.83
114 115 5.656859 TCCTAGATACATGTGCTACTGTTGT 59.343 40.000 9.11 0.00 0.00 3.32
115 116 5.980116 GTCCTAGATACATGTGCTACTGTTG 59.020 44.000 9.11 0.00 0.00 3.33
116 117 5.894393 AGTCCTAGATACATGTGCTACTGTT 59.106 40.000 9.11 0.00 0.00 3.16
117 118 5.450453 AGTCCTAGATACATGTGCTACTGT 58.550 41.667 9.11 0.00 0.00 3.55
118 119 6.398234 AAGTCCTAGATACATGTGCTACTG 57.602 41.667 9.11 3.00 0.00 2.74
119 120 6.836527 AGAAAGTCCTAGATACATGTGCTACT 59.163 38.462 9.11 3.92 0.00 2.57
120 121 7.045126 AGAAAGTCCTAGATACATGTGCTAC 57.955 40.000 9.11 1.67 0.00 3.58
121 122 7.661536 AAGAAAGTCCTAGATACATGTGCTA 57.338 36.000 9.11 9.14 0.00 3.49
122 123 6.552445 AAGAAAGTCCTAGATACATGTGCT 57.448 37.500 9.11 8.41 0.00 4.40
123 124 7.617041 AAAAGAAAGTCCTAGATACATGTGC 57.383 36.000 9.11 0.00 0.00 4.57
161 162 6.300369 CGGAACCGTGTATGCTTGATAAGC 62.300 50.000 6.60 6.60 43.72 3.09
162 163 3.245284 CGGAACCGTGTATGCTTGATAAG 59.755 47.826 4.99 0.00 34.35 1.73
163 164 3.191669 CGGAACCGTGTATGCTTGATAA 58.808 45.455 4.99 0.00 34.35 1.75
164 165 2.816689 CGGAACCGTGTATGCTTGATA 58.183 47.619 4.99 0.00 34.35 2.15
165 166 1.651987 CGGAACCGTGTATGCTTGAT 58.348 50.000 4.99 0.00 34.35 2.57
166 167 3.131326 CGGAACCGTGTATGCTTGA 57.869 52.632 4.99 0.00 34.35 3.02
177 178 1.199097 CATTTTTGGAGGACGGAACCG 59.801 52.381 11.83 11.83 46.03 4.44
178 179 2.510613 TCATTTTTGGAGGACGGAACC 58.489 47.619 0.00 0.00 0.00 3.62
179 180 4.941873 AGTATCATTTTTGGAGGACGGAAC 59.058 41.667 0.00 0.00 0.00 3.62
180 181 5.174037 AGTATCATTTTTGGAGGACGGAA 57.826 39.130 0.00 0.00 0.00 4.30
181 182 4.837093 AGTATCATTTTTGGAGGACGGA 57.163 40.909 0.00 0.00 0.00 4.69
182 183 4.335594 GGAAGTATCATTTTTGGAGGACGG 59.664 45.833 0.00 0.00 0.00 4.79
183 184 5.186198 AGGAAGTATCATTTTTGGAGGACG 58.814 41.667 0.00 0.00 0.00 4.79
184 185 6.317391 CAGAGGAAGTATCATTTTTGGAGGAC 59.683 42.308 0.00 0.00 0.00 3.85
185 186 6.418101 CAGAGGAAGTATCATTTTTGGAGGA 58.582 40.000 0.00 0.00 0.00 3.71
186 187 5.591877 CCAGAGGAAGTATCATTTTTGGAGG 59.408 44.000 0.00 0.00 0.00 4.30
187 188 6.183347 ACCAGAGGAAGTATCATTTTTGGAG 58.817 40.000 0.00 0.00 0.00 3.86
188 189 6.012508 AGACCAGAGGAAGTATCATTTTTGGA 60.013 38.462 0.00 0.00 0.00 3.53
189 190 6.183347 AGACCAGAGGAAGTATCATTTTTGG 58.817 40.000 0.00 0.00 0.00 3.28
190 191 7.693969 AAGACCAGAGGAAGTATCATTTTTG 57.306 36.000 0.00 0.00 0.00 2.44
191 192 8.712228 AAAAGACCAGAGGAAGTATCATTTTT 57.288 30.769 0.00 0.00 0.00 1.94
192 193 8.712228 AAAAAGACCAGAGGAAGTATCATTTT 57.288 30.769 0.00 0.00 0.00 1.82
221 222 9.952188 CGACTTCAGACAATTCTTATATACTGA 57.048 33.333 0.00 0.00 0.00 3.41
222 223 9.952188 TCGACTTCAGACAATTCTTATATACTG 57.048 33.333 0.00 0.00 0.00 2.74
226 227 9.522804 GAGTTCGACTTCAGACAATTCTTATAT 57.477 33.333 0.00 0.00 0.00 0.86
227 228 8.740906 AGAGTTCGACTTCAGACAATTCTTATA 58.259 33.333 0.00 0.00 0.00 0.98
228 229 7.607250 AGAGTTCGACTTCAGACAATTCTTAT 58.393 34.615 0.00 0.00 0.00 1.73
229 230 6.982852 AGAGTTCGACTTCAGACAATTCTTA 58.017 36.000 0.00 0.00 0.00 2.10
230 231 5.848406 AGAGTTCGACTTCAGACAATTCTT 58.152 37.500 0.00 0.00 0.00 2.52
231 232 5.461032 AGAGTTCGACTTCAGACAATTCT 57.539 39.130 0.00 0.00 0.00 2.40
232 233 6.150318 TGTAGAGTTCGACTTCAGACAATTC 58.850 40.000 0.00 0.00 0.00 2.17
233 234 6.085555 TGTAGAGTTCGACTTCAGACAATT 57.914 37.500 0.00 0.00 0.00 2.32
234 235 5.707242 TGTAGAGTTCGACTTCAGACAAT 57.293 39.130 0.00 0.00 0.00 2.71
235 236 5.509716 TTGTAGAGTTCGACTTCAGACAA 57.490 39.130 9.75 9.75 0.00 3.18
236 237 5.067413 ACTTTGTAGAGTTCGACTTCAGACA 59.933 40.000 0.00 0.00 0.00 3.41
237 238 5.521544 ACTTTGTAGAGTTCGACTTCAGAC 58.478 41.667 0.00 0.00 0.00 3.51
238 239 5.769484 ACTTTGTAGAGTTCGACTTCAGA 57.231 39.130 0.00 0.00 0.00 3.27
239 240 6.475727 TCAAACTTTGTAGAGTTCGACTTCAG 59.524 38.462 1.44 0.00 38.86 3.02
240 241 6.255020 GTCAAACTTTGTAGAGTTCGACTTCA 59.745 38.462 1.44 0.00 39.39 3.02
241 242 6.292221 GGTCAAACTTTGTAGAGTTCGACTTC 60.292 42.308 8.27 0.00 41.24 3.01
242 243 5.522824 GGTCAAACTTTGTAGAGTTCGACTT 59.477 40.000 8.27 0.00 41.24 3.01
243 244 5.048507 GGTCAAACTTTGTAGAGTTCGACT 58.951 41.667 8.27 0.00 41.24 4.18
244 245 4.807304 TGGTCAAACTTTGTAGAGTTCGAC 59.193 41.667 1.44 1.31 40.93 4.20
245 246 5.013568 TGGTCAAACTTTGTAGAGTTCGA 57.986 39.130 1.44 0.00 38.86 3.71
246 247 5.924475 ATGGTCAAACTTTGTAGAGTTCG 57.076 39.130 1.44 0.00 38.86 3.95
311 312 8.617809 ACGTCATGACTTAAAGTTTTATGTTGT 58.382 29.630 22.95 4.94 33.02 3.32
318 319 9.924650 AGTAGATACGTCATGACTTAAAGTTTT 57.075 29.630 22.95 2.67 0.00 2.43
321 322 8.344098 GCTAGTAGATACGTCATGACTTAAAGT 58.656 37.037 22.95 15.01 0.00 2.66
322 323 8.343366 TGCTAGTAGATACGTCATGACTTAAAG 58.657 37.037 22.95 9.92 0.00 1.85
323 324 8.217131 TGCTAGTAGATACGTCATGACTTAAA 57.783 34.615 22.95 6.53 0.00 1.52
324 325 7.797038 TGCTAGTAGATACGTCATGACTTAA 57.203 36.000 22.95 8.95 0.00 1.85
325 326 7.981102 ATGCTAGTAGATACGTCATGACTTA 57.019 36.000 22.95 18.33 0.00 2.24
326 327 6.885952 ATGCTAGTAGATACGTCATGACTT 57.114 37.500 22.95 16.67 0.00 3.01
327 328 6.885952 AATGCTAGTAGATACGTCATGACT 57.114 37.500 22.95 12.64 0.00 3.41
328 329 9.627395 AATTAATGCTAGTAGATACGTCATGAC 57.373 33.333 16.21 16.21 0.00 3.06
332 333 9.459640 GTGAAATTAATGCTAGTAGATACGTCA 57.540 33.333 0.00 0.00 0.00 4.35
333 334 9.459640 TGTGAAATTAATGCTAGTAGATACGTC 57.540 33.333 0.00 0.00 0.00 4.34
334 335 9.982651 ATGTGAAATTAATGCTAGTAGATACGT 57.017 29.630 0.00 0.00 0.00 3.57
390 391 2.876550 AGCCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
391 392 3.202829 AGCCTCGTAAAGTTTGACCAA 57.797 42.857 0.00 0.00 0.00 3.67
392 393 2.875933 CAAGCCTCGTAAAGTTTGACCA 59.124 45.455 0.00 0.00 0.00 4.02
393 394 3.059120 GTCAAGCCTCGTAAAGTTTGACC 60.059 47.826 8.09 0.00 39.44 4.02
394 395 3.808174 AGTCAAGCCTCGTAAAGTTTGAC 59.192 43.478 10.54 10.54 42.37 3.18
395 396 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
396 397 4.813296 AAGTCAAGCCTCGTAAAGTTTG 57.187 40.909 0.00 0.00 0.00 2.93
397 398 5.695363 GTCTAAGTCAAGCCTCGTAAAGTTT 59.305 40.000 0.00 0.00 0.00 2.66
398 399 5.221382 TGTCTAAGTCAAGCCTCGTAAAGTT 60.221 40.000 0.00 0.00 0.00 2.66
399 400 4.280174 TGTCTAAGTCAAGCCTCGTAAAGT 59.720 41.667 0.00 0.00 0.00 2.66
400 401 4.806330 TGTCTAAGTCAAGCCTCGTAAAG 58.194 43.478 0.00 0.00 0.00 1.85
401 402 4.859304 TGTCTAAGTCAAGCCTCGTAAA 57.141 40.909 0.00 0.00 0.00 2.01
402 403 4.859304 TTGTCTAAGTCAAGCCTCGTAA 57.141 40.909 0.00 0.00 0.00 3.18
403 404 4.859304 TTTGTCTAAGTCAAGCCTCGTA 57.141 40.909 0.00 0.00 0.00 3.43
404 405 3.746045 TTTGTCTAAGTCAAGCCTCGT 57.254 42.857 0.00 0.00 0.00 4.18
405 406 4.499183 AGATTTGTCTAAGTCAAGCCTCG 58.501 43.478 0.00 0.00 0.00 4.63
406 407 8.499403 AATTAGATTTGTCTAAGTCAAGCCTC 57.501 34.615 4.47 0.00 35.89 4.70
407 408 8.734386 CAAATTAGATTTGTCTAAGTCAAGCCT 58.266 33.333 5.46 0.00 43.47 4.58
408 409 8.902040 CAAATTAGATTTGTCTAAGTCAAGCC 57.098 34.615 5.46 0.00 43.47 4.35
423 424 9.087424 GCTCCTTTTTATTTCGCAAATTAGATT 57.913 29.630 0.52 0.00 32.38 2.40
424 425 7.432252 CGCTCCTTTTTATTTCGCAAATTAGAT 59.568 33.333 0.52 0.00 32.38 1.98
425 426 6.745450 CGCTCCTTTTTATTTCGCAAATTAGA 59.255 34.615 0.52 0.00 32.38 2.10
426 427 6.020678 CCGCTCCTTTTTATTTCGCAAATTAG 60.021 38.462 0.52 0.00 32.38 1.73
427 428 5.802956 CCGCTCCTTTTTATTTCGCAAATTA 59.197 36.000 0.52 0.00 32.38 1.40
428 429 4.625311 CCGCTCCTTTTTATTTCGCAAATT 59.375 37.500 0.52 0.00 32.38 1.82
429 430 4.082463 TCCGCTCCTTTTTATTTCGCAAAT 60.082 37.500 0.00 0.00 34.90 2.32
430 431 3.253677 TCCGCTCCTTTTTATTTCGCAAA 59.746 39.130 0.00 0.00 0.00 3.68
431 432 2.814919 TCCGCTCCTTTTTATTTCGCAA 59.185 40.909 0.00 0.00 0.00 4.85
432 433 2.418628 CTCCGCTCCTTTTTATTTCGCA 59.581 45.455 0.00 0.00 0.00 5.10
433 434 2.223272 CCTCCGCTCCTTTTTATTTCGC 60.223 50.000 0.00 0.00 0.00 4.70
434 435 3.267483 TCCTCCGCTCCTTTTTATTTCG 58.733 45.455 0.00 0.00 0.00 3.46
435 436 4.700692 ACTTCCTCCGCTCCTTTTTATTTC 59.299 41.667 0.00 0.00 0.00 2.17
436 437 4.663334 ACTTCCTCCGCTCCTTTTTATTT 58.337 39.130 0.00 0.00 0.00 1.40
437 438 4.302559 ACTTCCTCCGCTCCTTTTTATT 57.697 40.909 0.00 0.00 0.00 1.40
438 439 5.632034 ATACTTCCTCCGCTCCTTTTTAT 57.368 39.130 0.00 0.00 0.00 1.40
439 440 6.549433 TTATACTTCCTCCGCTCCTTTTTA 57.451 37.500 0.00 0.00 0.00 1.52
440 441 5.431179 TTATACTTCCTCCGCTCCTTTTT 57.569 39.130 0.00 0.00 0.00 1.94
441 442 5.045797 AGTTTATACTTCCTCCGCTCCTTTT 60.046 40.000 0.00 0.00 0.00 2.27
442 443 4.470304 AGTTTATACTTCCTCCGCTCCTTT 59.530 41.667 0.00 0.00 0.00 3.11
443 444 4.031611 AGTTTATACTTCCTCCGCTCCTT 58.968 43.478 0.00 0.00 0.00 3.36
444 445 3.644335 AGTTTATACTTCCTCCGCTCCT 58.356 45.455 0.00 0.00 0.00 3.69
445 446 4.403585 AAGTTTATACTTCCTCCGCTCC 57.596 45.455 0.00 0.00 40.60 4.70
493 494 1.934589 CTGCGTCGGGATCATGTAAA 58.065 50.000 0.00 0.00 0.00 2.01
537 548 2.362397 CCGTGCTCCATGTAGTATCAGT 59.638 50.000 0.00 0.00 0.00 3.41
538 549 2.288457 CCCGTGCTCCATGTAGTATCAG 60.288 54.545 0.00 0.00 0.00 2.90
539 550 1.686587 CCCGTGCTCCATGTAGTATCA 59.313 52.381 0.00 0.00 0.00 2.15
540 551 1.605712 GCCCGTGCTCCATGTAGTATC 60.606 57.143 0.00 0.00 33.53 2.24
641 730 4.052229 CCGACCGCGAGTTCCTGT 62.052 66.667 8.23 0.00 40.82 4.00
655 744 4.717629 CGTTGTCTGGCTCGCCGA 62.718 66.667 3.14 1.18 39.42 5.54
765 854 0.813610 GCTGTGCGGTGGTATATGCA 60.814 55.000 0.00 0.00 34.44 3.96
766 855 0.813610 TGCTGTGCGGTGGTATATGC 60.814 55.000 0.00 0.00 0.00 3.14
767 856 1.220529 CTGCTGTGCGGTGGTATATG 58.779 55.000 0.00 0.00 0.00 1.78
815 914 1.952102 GACACGTCCGGCTATCCCAA 61.952 60.000 0.00 0.00 0.00 4.12
830 929 2.053277 GGAGGAGGACGAGGGACAC 61.053 68.421 0.00 0.00 0.00 3.67
831 930 2.212794 GAGGAGGAGGACGAGGGACA 62.213 65.000 0.00 0.00 0.00 4.02
832 931 1.454295 GAGGAGGAGGACGAGGGAC 60.454 68.421 0.00 0.00 0.00 4.46
833 932 1.619975 AGAGGAGGAGGACGAGGGA 60.620 63.158 0.00 0.00 0.00 4.20
834 933 1.454847 CAGAGGAGGAGGACGAGGG 60.455 68.421 0.00 0.00 0.00 4.30
835 934 2.124693 GCAGAGGAGGAGGACGAGG 61.125 68.421 0.00 0.00 0.00 4.63
836 935 2.124693 GGCAGAGGAGGAGGACGAG 61.125 68.421 0.00 0.00 0.00 4.18
837 936 2.043852 GGCAGAGGAGGAGGACGA 60.044 66.667 0.00 0.00 0.00 4.20
838 937 3.522731 CGGCAGAGGAGGAGGACG 61.523 72.222 0.00 0.00 0.00 4.79
839 938 3.844090 GCGGCAGAGGAGGAGGAC 61.844 72.222 0.00 0.00 0.00 3.85
842 941 4.527583 GCAGCGGCAGAGGAGGAG 62.528 72.222 3.18 0.00 40.72 3.69
1045 1157 3.491652 GCGACAAGAAGCGGAGGC 61.492 66.667 0.00 0.00 40.37 4.70
1305 1420 1.134530 CGTCCTCAAGAAGCGCGTAG 61.135 60.000 8.43 0.00 0.00 3.51
1341 1456 3.515286 TCGTAGGCCGCGAAGGAG 61.515 66.667 20.18 0.00 45.00 3.69
1480 1595 4.462417 CGCGACGAGGACGAGCTT 62.462 66.667 0.00 0.00 42.66 3.74
1851 1966 3.041940 GCCACCAGGTCGAACACG 61.042 66.667 1.87 0.00 37.19 4.49
2172 2290 4.408821 TCCACCTCCCACATGCGC 62.409 66.667 0.00 0.00 0.00 6.09
2173 2291 2.124983 CTCCACCTCCCACATGCG 60.125 66.667 0.00 0.00 0.00 4.73
2256 2374 1.690985 GAAGGGAGGGTGGGAGGAG 60.691 68.421 0.00 0.00 0.00 3.69
2271 2389 1.156736 CTTTGTACAGTGGCGGGAAG 58.843 55.000 0.00 0.00 0.00 3.46
2329 2449 1.738700 GCAGGAAGAAGAGAAGGCGAG 60.739 57.143 0.00 0.00 0.00 5.03
2387 2517 7.919091 CGCTCCTAAAATGAACATGTACTACTA 59.081 37.037 0.00 0.00 0.00 1.82
2388 2518 6.757010 CGCTCCTAAAATGAACATGTACTACT 59.243 38.462 0.00 0.00 0.00 2.57
2389 2519 6.509677 GCGCTCCTAAAATGAACATGTACTAC 60.510 42.308 0.00 0.00 0.00 2.73
2390 2520 5.522460 GCGCTCCTAAAATGAACATGTACTA 59.478 40.000 0.00 0.00 0.00 1.82
2412 2542 0.652592 AAAATCGATTCTCGCAGGCG 59.347 50.000 11.83 7.46 40.21 5.52
2413 2543 1.268234 CCAAAATCGATTCTCGCAGGC 60.268 52.381 11.83 0.00 40.21 4.85
2414 2544 2.009774 ACCAAAATCGATTCTCGCAGG 58.990 47.619 11.83 9.50 40.21 4.85
2415 2545 3.125146 TGAACCAAAATCGATTCTCGCAG 59.875 43.478 11.83 0.50 40.21 5.18
2416 2546 3.070748 TGAACCAAAATCGATTCTCGCA 58.929 40.909 11.83 3.01 40.21 5.10
2419 2549 5.942872 ACACATGAACCAAAATCGATTCTC 58.057 37.500 11.83 4.46 0.00 2.87
2431 2561 2.229792 GGCAGAAGAACACATGAACCA 58.770 47.619 0.00 0.00 0.00 3.67
2433 2563 2.229792 TGGGCAGAAGAACACATGAAC 58.770 47.619 0.00 0.00 0.00 3.18
2435 2565 2.229792 GTTGGGCAGAAGAACACATGA 58.770 47.619 0.00 0.00 0.00 3.07
2437 2567 1.238439 CGTTGGGCAGAAGAACACAT 58.762 50.000 0.00 0.00 0.00 3.21
2438 2568 0.817634 CCGTTGGGCAGAAGAACACA 60.818 55.000 0.00 0.00 0.00 3.72
2439 2569 1.949257 CCGTTGGGCAGAAGAACAC 59.051 57.895 0.00 0.00 0.00 3.32
2440 2570 4.473643 CCGTTGGGCAGAAGAACA 57.526 55.556 0.00 0.00 0.00 3.18
2451 2581 2.257409 ATCCAGCTGGTAGCCGTTGG 62.257 60.000 31.58 12.06 43.77 3.77
2523 2653 2.419324 GGAGCAGCACAGAAGAAATCAG 59.581 50.000 0.00 0.00 0.00 2.90
2526 2656 2.305343 AGAGGAGCAGCACAGAAGAAAT 59.695 45.455 0.00 0.00 0.00 2.17
2527 2657 1.696336 AGAGGAGCAGCACAGAAGAAA 59.304 47.619 0.00 0.00 0.00 2.52
2537 2667 0.675633 GAGAGGATCAGAGGAGCAGC 59.324 60.000 0.00 0.00 37.82 5.25
2566 2696 1.549203 GAATCCTGCTTTCCCTTGCA 58.451 50.000 0.00 0.00 37.63 4.08
2570 2700 1.573108 TCTCGAATCCTGCTTTCCCT 58.427 50.000 0.00 0.00 0.00 4.20
2571 2701 2.629336 ATCTCGAATCCTGCTTTCCC 57.371 50.000 0.00 0.00 0.00 3.97
2572 2702 6.625873 AAAATATCTCGAATCCTGCTTTCC 57.374 37.500 0.00 0.00 0.00 3.13
2625 2757 1.889105 CAAGCGTGTGTGCTGGAGT 60.889 57.895 0.00 0.00 46.60 3.85
2626 2758 2.610694 CCAAGCGTGTGTGCTGGAG 61.611 63.158 0.00 0.00 46.60 3.86
2627 2759 2.591429 CCAAGCGTGTGTGCTGGA 60.591 61.111 0.00 0.00 46.60 3.86
2636 2768 1.073199 AGTTCCCTTCCCAAGCGTG 59.927 57.895 0.00 0.00 0.00 5.34
2639 2771 1.821136 CATTCAGTTCCCTTCCCAAGC 59.179 52.381 0.00 0.00 0.00 4.01
2662 2794 5.536538 GCTTAAGGGAAAATTAGCAGCCTAT 59.463 40.000 4.29 0.00 0.00 2.57
2666 2798 3.181475 GGGCTTAAGGGAAAATTAGCAGC 60.181 47.826 4.29 0.00 0.00 5.25
2679 2811 3.582647 ACAAAAAGGGATTGGGCTTAAGG 59.417 43.478 4.29 0.00 32.02 2.69
2680 2812 4.890158 ACAAAAAGGGATTGGGCTTAAG 57.110 40.909 0.00 0.00 32.02 1.85
2685 2817 2.352715 CGAGAACAAAAAGGGATTGGGC 60.353 50.000 0.00 0.00 32.02 5.36
2690 2822 3.326747 CTCGTCGAGAACAAAAAGGGAT 58.673 45.455 17.52 0.00 0.00 3.85
2694 2826 2.096713 CCTGCTCGTCGAGAACAAAAAG 60.097 50.000 26.11 9.78 0.00 2.27
2700 2832 1.941294 TCTATCCTGCTCGTCGAGAAC 59.059 52.381 26.11 9.56 0.00 3.01
2701 2833 2.327200 TCTATCCTGCTCGTCGAGAA 57.673 50.000 26.11 15.09 0.00 2.87
2708 2840 3.917329 TTAACGGATCTATCCTGCTCG 57.083 47.619 7.39 0.00 44.93 5.03
2741 2873 1.205064 CTCAAAGCGACGCAAGGTG 59.795 57.895 23.70 13.46 46.39 4.00
2822 2978 5.413833 CGGGCGGAGAAAATATCTAGTAGTA 59.586 44.000 0.00 0.00 38.96 1.82
2823 2979 4.217983 CGGGCGGAGAAAATATCTAGTAGT 59.782 45.833 0.00 0.00 38.96 2.73
2824 2980 4.380655 CCGGGCGGAGAAAATATCTAGTAG 60.381 50.000 0.00 0.00 38.96 2.57
2891 3047 2.440247 GTGGCCGGGGAATCAAGG 60.440 66.667 2.18 0.00 0.00 3.61
2983 3153 3.148279 GATCCGGAGAGGGCACGT 61.148 66.667 11.34 0.00 41.52 4.49
2990 3160 2.105128 GGTGCGTGATCCGGAGAG 59.895 66.667 11.34 1.82 37.68 3.20
2991 3161 3.822192 CGGTGCGTGATCCGGAGA 61.822 66.667 11.34 0.00 42.61 3.71
2996 3166 2.746277 AAAGCCGGTGCGTGATCC 60.746 61.111 1.90 0.00 44.33 3.36
3003 3191 0.249031 GGAATATGCAAAGCCGGTGC 60.249 55.000 8.52 8.52 42.55 5.01
3075 3263 3.014085 TTTGGAGACTAGCGGCCGG 62.014 63.158 29.38 13.36 0.00 6.13
3076 3264 1.810030 GTTTGGAGACTAGCGGCCG 60.810 63.158 24.05 24.05 0.00 6.13
3077 3265 1.810030 CGTTTGGAGACTAGCGGCC 60.810 63.158 0.00 0.00 36.30 6.13
3173 3362 3.127533 CGAGGGAAAAGGCGCCAG 61.128 66.667 31.54 3.88 0.00 4.85
3202 3391 4.548513 ACCCTTTTTGCCCCGCCA 62.549 61.111 0.00 0.00 0.00 5.69
3203 3392 3.234630 GAACCCTTTTTGCCCCGCC 62.235 63.158 0.00 0.00 0.00 6.13
3204 3393 2.342279 GAACCCTTTTTGCCCCGC 59.658 61.111 0.00 0.00 0.00 6.13
3210 3399 2.224185 CCTTTTCCCCGAACCCTTTTTG 60.224 50.000 0.00 0.00 0.00 2.44
3211 3400 2.043992 CCTTTTCCCCGAACCCTTTTT 58.956 47.619 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.