Multiple sequence alignment - TraesCS7A01G406100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G406100 chr7A 100.000 6270 0 0 1 6270 589750769 589757038 0.000000e+00 11579.0
1 TraesCS7A01G406100 chr7D 94.523 4327 156 42 1017 5294 516021991 516026285 0.000000e+00 6602.0
2 TraesCS7A01G406100 chr7D 92.424 858 44 14 5264 6109 516026286 516027134 0.000000e+00 1205.0
3 TraesCS7A01G406100 chr7D 90.366 519 38 7 122 632 516021037 516021551 0.000000e+00 671.0
4 TraesCS7A01G406100 chr7D 89.349 169 6 5 6112 6270 516027265 516027431 1.070000e-47 202.0
5 TraesCS7A01G406100 chr7D 83.019 159 25 2 328 484 553499666 553499508 6.550000e-30 143.0
6 TraesCS7A01G406100 chr7B 95.484 3809 120 26 1031 4805 548377426 548381216 0.000000e+00 6034.0
7 TraesCS7A01G406100 chr7B 81.896 1055 83 54 5264 6270 548381778 548382772 0.000000e+00 791.0
8 TraesCS7A01G406100 chr7B 89.382 518 32 10 4799 5294 548381261 548381777 1.150000e-176 630.0
9 TraesCS7A01G406100 chr7B 90.547 201 14 2 125 320 548376612 548376812 1.730000e-65 261.0
10 TraesCS7A01G406100 chr5B 91.339 127 11 0 1 127 16680672 16680798 2.320000e-39 174.0
11 TraesCS7A01G406100 chr5B 89.764 127 13 0 1 127 16700615 16700741 5.030000e-36 163.0
12 TraesCS7A01G406100 chr4D 92.373 118 9 0 9 126 505324760 505324877 1.080000e-37 169.0
13 TraesCS7A01G406100 chr2A 90.625 128 10 2 4 129 743571800 743571927 1.080000e-37 169.0
14 TraesCS7A01G406100 chr6D 89.844 128 11 2 1 126 420237877 420238004 5.030000e-36 163.0
15 TraesCS7A01G406100 chr3D 89.844 128 11 2 2 127 359726065 359725938 5.030000e-36 163.0
16 TraesCS7A01G406100 chr6B 89.683 126 11 2 4 127 470814633 470814758 6.510000e-35 159.0
17 TraesCS7A01G406100 chr2B 88.976 127 14 0 1 127 355383447 355383573 2.340000e-34 158.0
18 TraesCS7A01G406100 chr2B 84.354 147 22 1 332 477 667871495 667871641 6.550000e-30 143.0
19 TraesCS7A01G406100 chr1D 88.976 127 14 0 1 127 359726537 359726663 2.340000e-34 158.0
20 TraesCS7A01G406100 chr1A 83.436 163 22 4 323 482 100359868 100360028 5.070000e-31 147.0
21 TraesCS7A01G406100 chr1A 84.106 151 23 1 328 477 578404609 578404459 1.820000e-30 145.0
22 TraesCS7A01G406100 chr6A 83.871 155 21 3 328 480 29492015 29491863 1.820000e-30 145.0
23 TraesCS7A01G406100 chr5D 83.439 157 24 2 328 482 489168298 489168454 1.820000e-30 145.0
24 TraesCS7A01G406100 chr5D 81.818 165 26 4 319 480 509940211 509940048 1.100000e-27 135.0
25 TraesCS7A01G406100 chr3B 83.125 160 25 2 323 480 823171971 823171812 1.820000e-30 145.0
26 TraesCS7A01G406100 chr4A 97.297 37 1 0 994 1030 88598609 88598573 5.250000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G406100 chr7A 589750769 589757038 6269 False 11579 11579 100.00000 1 6270 1 chr7A.!!$F1 6269
1 TraesCS7A01G406100 chr7D 516021037 516027431 6394 False 2170 6602 91.66550 122 6270 4 chr7D.!!$F1 6148
2 TraesCS7A01G406100 chr7B 548376612 548382772 6160 False 1929 6034 89.32725 125 6270 4 chr7B.!!$F1 6145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 951 0.033699 GGCTCCTCCATTGCTCCTTT 60.034 55.0 0.00 0.00 34.01 3.11 F
1029 1095 0.178961 GAAATCATGGCCCTACCCCC 60.179 60.0 0.00 0.00 37.83 5.40 F
2701 2810 0.530744 AAGAGCAATGCAGGCATGTG 59.469 50.0 8.35 9.26 36.68 3.21 F
2872 2981 0.337428 ATGCTTCCCATCAGGCCTTT 59.663 50.0 0.00 0.00 34.51 3.11 F
3698 3815 0.965866 GCTGGAAAGGTAACAGGCCC 60.966 60.0 0.00 0.00 41.41 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1848 1.381327 TCGCCCCCACCAAACAAAA 60.381 52.632 0.0 0.0 0.00 2.44 R
2872 2981 1.702401 TGCAGAACAACTATGGGGTCA 59.298 47.619 0.0 0.0 0.00 4.02 R
4270 4391 3.262420 GTGCTTACACCATACACCTGAG 58.738 50.000 0.0 0.0 41.21 3.35 R
4768 4892 1.594331 AAGACTGCGTTTCAAGTCCC 58.406 50.000 0.0 0.0 32.18 4.46 R
5647 5887 0.238289 CGTCTTGGAAACGCTGCAAT 59.762 50.000 0.0 0.0 34.49 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.560253 CTTAAAATGATATGCCGGCTTAGT 57.440 37.500 29.70 14.88 0.00 2.24
24 25 6.554334 TTAAAATGATATGCCGGCTTAGTC 57.446 37.500 29.70 21.71 0.00 2.59
25 26 4.357918 AAATGATATGCCGGCTTAGTCT 57.642 40.909 29.70 10.92 0.00 3.24
26 27 3.601443 ATGATATGCCGGCTTAGTCTC 57.399 47.619 29.70 19.28 0.00 3.36
27 28 2.598565 TGATATGCCGGCTTAGTCTCT 58.401 47.619 29.70 10.12 0.00 3.10
28 29 2.965831 TGATATGCCGGCTTAGTCTCTT 59.034 45.455 29.70 9.34 0.00 2.85
29 30 2.890808 TATGCCGGCTTAGTCTCTTG 57.109 50.000 29.70 0.00 0.00 3.02
30 31 1.195115 ATGCCGGCTTAGTCTCTTGA 58.805 50.000 29.70 1.81 0.00 3.02
31 32 0.973632 TGCCGGCTTAGTCTCTTGAA 59.026 50.000 29.70 0.00 0.00 2.69
32 33 1.066858 TGCCGGCTTAGTCTCTTGAAG 60.067 52.381 29.70 0.00 0.00 3.02
33 34 1.740718 GCCGGCTTAGTCTCTTGAAGG 60.741 57.143 22.15 0.00 0.00 3.46
34 35 1.550976 CCGGCTTAGTCTCTTGAAGGT 59.449 52.381 0.00 0.00 0.00 3.50
35 36 2.611518 CGGCTTAGTCTCTTGAAGGTG 58.388 52.381 0.00 0.00 0.00 4.00
36 37 2.351455 GGCTTAGTCTCTTGAAGGTGC 58.649 52.381 0.00 0.00 0.00 5.01
37 38 2.027653 GGCTTAGTCTCTTGAAGGTGCT 60.028 50.000 0.00 0.00 0.00 4.40
38 39 3.258228 GCTTAGTCTCTTGAAGGTGCTC 58.742 50.000 0.00 0.00 0.00 4.26
39 40 3.306364 GCTTAGTCTCTTGAAGGTGCTCA 60.306 47.826 0.00 0.00 0.00 4.26
40 41 4.622695 GCTTAGTCTCTTGAAGGTGCTCAT 60.623 45.833 0.00 0.00 0.00 2.90
41 42 5.394663 GCTTAGTCTCTTGAAGGTGCTCATA 60.395 44.000 0.00 0.00 0.00 2.15
42 43 4.734398 AGTCTCTTGAAGGTGCTCATAG 57.266 45.455 0.00 0.00 0.00 2.23
43 44 3.450457 AGTCTCTTGAAGGTGCTCATAGG 59.550 47.826 0.00 0.00 0.00 2.57
44 45 2.768527 TCTCTTGAAGGTGCTCATAGGG 59.231 50.000 0.00 0.00 0.00 3.53
45 46 1.839994 TCTTGAAGGTGCTCATAGGGG 59.160 52.381 0.00 0.00 0.00 4.79
46 47 1.561542 CTTGAAGGTGCTCATAGGGGT 59.438 52.381 0.00 0.00 0.00 4.95
47 48 2.561209 TGAAGGTGCTCATAGGGGTA 57.439 50.000 0.00 0.00 0.00 3.69
48 49 2.398588 TGAAGGTGCTCATAGGGGTAG 58.601 52.381 0.00 0.00 0.00 3.18
49 50 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
50 51 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
51 52 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
52 53 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
53 54 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
54 55 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
55 56 1.970226 GCTCATAGGGGTAGGGTGTGT 60.970 57.143 0.00 0.00 0.00 3.72
56 57 1.762957 CTCATAGGGGTAGGGTGTGTG 59.237 57.143 0.00 0.00 0.00 3.82
57 58 1.079825 TCATAGGGGTAGGGTGTGTGT 59.920 52.381 0.00 0.00 0.00 3.72
58 59 1.913419 CATAGGGGTAGGGTGTGTGTT 59.087 52.381 0.00 0.00 0.00 3.32
59 60 2.121478 TAGGGGTAGGGTGTGTGTTT 57.879 50.000 0.00 0.00 0.00 2.83
60 61 0.476771 AGGGGTAGGGTGTGTGTTTG 59.523 55.000 0.00 0.00 0.00 2.93
61 62 0.184211 GGGGTAGGGTGTGTGTTTGT 59.816 55.000 0.00 0.00 0.00 2.83
62 63 1.314730 GGGTAGGGTGTGTGTTTGTG 58.685 55.000 0.00 0.00 0.00 3.33
63 64 0.666374 GGTAGGGTGTGTGTTTGTGC 59.334 55.000 0.00 0.00 0.00 4.57
64 65 0.306533 GTAGGGTGTGTGTTTGTGCG 59.693 55.000 0.00 0.00 0.00 5.34
65 66 0.107606 TAGGGTGTGTGTTTGTGCGT 60.108 50.000 0.00 0.00 0.00 5.24
66 67 0.963355 AGGGTGTGTGTTTGTGCGTT 60.963 50.000 0.00 0.00 0.00 4.84
67 68 0.524604 GGGTGTGTGTTTGTGCGTTC 60.525 55.000 0.00 0.00 0.00 3.95
68 69 0.859788 GGTGTGTGTTTGTGCGTTCG 60.860 55.000 0.00 0.00 0.00 3.95
69 70 0.179210 GTGTGTGTTTGTGCGTTCGT 60.179 50.000 0.00 0.00 0.00 3.85
70 71 1.060842 GTGTGTGTTTGTGCGTTCGTA 59.939 47.619 0.00 0.00 0.00 3.43
71 72 1.325037 TGTGTGTTTGTGCGTTCGTAG 59.675 47.619 0.00 0.00 0.00 3.51
72 73 1.589320 GTGTGTTTGTGCGTTCGTAGA 59.411 47.619 0.00 0.00 0.00 2.59
73 74 1.855978 TGTGTTTGTGCGTTCGTAGAG 59.144 47.619 0.00 0.00 38.43 2.43
74 75 1.191647 GTGTTTGTGCGTTCGTAGAGG 59.808 52.381 0.00 0.00 38.43 3.69
75 76 1.202440 TGTTTGTGCGTTCGTAGAGGT 60.202 47.619 0.00 0.00 38.43 3.85
76 77 1.191647 GTTTGTGCGTTCGTAGAGGTG 59.808 52.381 0.00 0.00 38.43 4.00
77 78 0.669619 TTGTGCGTTCGTAGAGGTGA 59.330 50.000 0.00 0.00 38.43 4.02
78 79 0.240145 TGTGCGTTCGTAGAGGTGAG 59.760 55.000 0.00 0.00 38.43 3.51
79 80 0.240411 GTGCGTTCGTAGAGGTGAGT 59.760 55.000 0.00 0.00 38.43 3.41
80 81 0.240145 TGCGTTCGTAGAGGTGAGTG 59.760 55.000 0.00 0.00 38.43 3.51
81 82 0.240411 GCGTTCGTAGAGGTGAGTGT 59.760 55.000 0.00 0.00 38.43 3.55
82 83 1.466167 GCGTTCGTAGAGGTGAGTGTA 59.534 52.381 0.00 0.00 38.43 2.90
83 84 2.097142 GCGTTCGTAGAGGTGAGTGTAT 59.903 50.000 0.00 0.00 38.43 2.29
84 85 3.681855 CGTTCGTAGAGGTGAGTGTATG 58.318 50.000 0.00 0.00 38.43 2.39
85 86 3.436496 GTTCGTAGAGGTGAGTGTATGC 58.564 50.000 0.00 0.00 38.43 3.14
86 87 1.669265 TCGTAGAGGTGAGTGTATGCG 59.331 52.381 0.00 0.00 0.00 4.73
87 88 1.841450 GTAGAGGTGAGTGTATGCGC 58.159 55.000 0.00 0.00 0.00 6.09
88 89 0.380733 TAGAGGTGAGTGTATGCGCG 59.619 55.000 0.00 0.00 0.00 6.86
89 90 1.153823 GAGGTGAGTGTATGCGCGT 60.154 57.895 8.43 7.55 0.00 6.01
90 91 0.099968 GAGGTGAGTGTATGCGCGTA 59.900 55.000 8.43 4.92 0.00 4.42
91 92 0.744874 AGGTGAGTGTATGCGCGTAT 59.255 50.000 15.52 15.52 0.00 3.06
92 93 0.852777 GGTGAGTGTATGCGCGTATG 59.147 55.000 20.45 0.00 0.00 2.39
93 94 1.556564 GTGAGTGTATGCGCGTATGT 58.443 50.000 20.45 0.00 0.00 2.29
94 95 2.542205 GGTGAGTGTATGCGCGTATGTA 60.542 50.000 20.45 5.53 0.00 2.29
95 96 3.305964 GTGAGTGTATGCGCGTATGTAT 58.694 45.455 20.45 2.87 0.00 2.29
96 97 3.119628 GTGAGTGTATGCGCGTATGTATG 59.880 47.826 20.45 0.00 0.00 2.39
97 98 3.003897 TGAGTGTATGCGCGTATGTATGA 59.996 43.478 20.45 0.00 0.00 2.15
98 99 3.565516 AGTGTATGCGCGTATGTATGAG 58.434 45.455 20.45 0.00 0.00 2.90
99 100 3.004419 AGTGTATGCGCGTATGTATGAGT 59.996 43.478 20.45 0.00 0.00 3.41
100 101 3.119628 GTGTATGCGCGTATGTATGAGTG 59.880 47.826 20.45 0.00 0.00 3.51
101 102 1.139989 ATGCGCGTATGTATGAGTGC 58.860 50.000 9.48 0.00 40.17 4.40
102 103 0.102300 TGCGCGTATGTATGAGTGCT 59.898 50.000 8.43 0.00 40.38 4.40
103 104 1.209128 GCGCGTATGTATGAGTGCTT 58.791 50.000 8.43 0.00 37.18 3.91
104 105 1.071239 GCGCGTATGTATGAGTGCTTG 60.071 52.381 8.43 0.00 37.18 4.01
105 106 1.071239 CGCGTATGTATGAGTGCTTGC 60.071 52.381 0.00 0.00 0.00 4.01
106 107 1.071239 GCGTATGTATGAGTGCTTGCG 60.071 52.381 0.00 0.00 0.00 4.85
107 108 2.193447 CGTATGTATGAGTGCTTGCGT 58.807 47.619 0.00 0.00 0.00 5.24
108 109 2.216488 CGTATGTATGAGTGCTTGCGTC 59.784 50.000 0.00 0.00 0.00 5.19
109 110 2.680312 ATGTATGAGTGCTTGCGTCT 57.320 45.000 0.00 0.00 0.00 4.18
110 111 1.713597 TGTATGAGTGCTTGCGTCTG 58.286 50.000 0.00 0.00 0.00 3.51
111 112 1.000843 TGTATGAGTGCTTGCGTCTGT 59.999 47.619 0.00 0.00 0.00 3.41
112 113 2.230266 TGTATGAGTGCTTGCGTCTGTA 59.770 45.455 0.00 0.00 0.00 2.74
113 114 1.714794 ATGAGTGCTTGCGTCTGTAC 58.285 50.000 0.00 0.00 0.00 2.90
114 115 0.319555 TGAGTGCTTGCGTCTGTACC 60.320 55.000 0.00 0.00 0.00 3.34
115 116 1.344942 GAGTGCTTGCGTCTGTACCG 61.345 60.000 0.00 0.00 0.00 4.02
116 117 1.663702 GTGCTTGCGTCTGTACCGT 60.664 57.895 0.00 0.00 0.00 4.83
117 118 1.663388 TGCTTGCGTCTGTACCGTG 60.663 57.895 0.00 0.00 0.00 4.94
118 119 1.663702 GCTTGCGTCTGTACCGTGT 60.664 57.895 0.00 0.00 0.00 4.49
119 120 1.219522 GCTTGCGTCTGTACCGTGTT 61.220 55.000 0.00 0.00 0.00 3.32
120 121 1.931709 GCTTGCGTCTGTACCGTGTTA 60.932 52.381 0.00 0.00 0.00 2.41
199 200 9.607285 TTCTTACAAGAAAGCGAACATTAATTC 57.393 29.630 1.92 0.00 41.75 2.17
201 202 9.559958 CTTACAAGAAAGCGAACATTAATTCAT 57.440 29.630 0.00 0.00 0.00 2.57
248 249 2.231716 ACTTGGGGTTGGCTAATTCC 57.768 50.000 0.00 0.00 0.00 3.01
256 257 2.618709 GGTTGGCTAATTCCCAATCGAG 59.381 50.000 12.15 0.00 43.64 4.04
257 258 3.541632 GTTGGCTAATTCCCAATCGAGA 58.458 45.455 12.15 0.00 43.64 4.04
258 259 3.194005 TGGCTAATTCCCAATCGAGAC 57.806 47.619 0.00 0.00 0.00 3.36
267 272 4.761235 TCCCAATCGAGACGTATATGTC 57.239 45.455 16.02 16.02 39.21 3.06
268 273 3.187842 TCCCAATCGAGACGTATATGTCG 59.812 47.826 17.39 9.17 43.70 4.35
418 427 8.538409 AAAGTGTGGATTCATTTATTTTGCTC 57.462 30.769 0.00 0.00 0.00 4.26
423 432 6.759827 GTGGATTCATTTATTTTGCTCTGCAT 59.240 34.615 0.00 0.00 38.76 3.96
428 437 7.395190 TCATTTATTTTGCTCTGCATGTAGT 57.605 32.000 10.80 0.00 38.76 2.73
436 445 5.806654 TGCTCTGCATGTAGTCCATATTA 57.193 39.130 10.80 0.00 31.71 0.98
437 446 6.173427 TGCTCTGCATGTAGTCCATATTAA 57.827 37.500 10.80 0.00 31.71 1.40
471 480 8.959705 AAAGGACTTATATTTAAGAACGGAGG 57.040 34.615 9.58 0.00 38.56 4.30
540 549 4.022068 TGGCAGTGATTTGGATCAAAGAAC 60.022 41.667 0.00 1.11 43.58 3.01
546 555 3.896648 TTTGGATCAAAGAACTGCGAC 57.103 42.857 0.00 0.00 0.00 5.19
617 628 4.288105 ACCATATTTGTTTGCATTTCCCCA 59.712 37.500 0.00 0.00 0.00 4.96
627 638 6.432472 TGTTTGCATTTCCCCAATTTTTATCC 59.568 34.615 0.00 0.00 0.00 2.59
735 749 8.553459 TTCAGCTTTCTATAGTTTTTCTCTGG 57.447 34.615 0.00 0.00 0.00 3.86
752 766 1.834263 CTGGAAAAGGATCTCGGACCT 59.166 52.381 0.00 0.00 38.23 3.85
769 783 3.665675 CTTTCTCTGACCCGGGGCG 62.666 68.421 27.92 18.94 0.00 6.13
772 786 3.917760 CTCTGACCCGGGGCGATC 61.918 72.222 27.92 14.14 0.00 3.69
781 796 1.447317 CCGGGGCGATCCATGAAAAG 61.447 60.000 0.00 0.00 37.22 2.27
785 800 1.410153 GGGCGATCCATGAAAAGCAAT 59.590 47.619 0.00 0.00 35.00 3.56
789 804 4.217118 GGCGATCCATGAAAAGCAATATCT 59.783 41.667 0.00 0.00 0.00 1.98
791 806 5.049198 GCGATCCATGAAAAGCAATATCTGA 60.049 40.000 0.00 0.00 0.00 3.27
792 807 6.513884 GCGATCCATGAAAAGCAATATCTGAA 60.514 38.462 0.00 0.00 0.00 3.02
802 817 4.592942 AGCAATATCTGAAAGTGCCAGAA 58.407 39.130 0.00 0.00 43.07 3.02
807 822 0.662619 CTGAAAGTGCCAGAACGCAA 59.337 50.000 0.00 0.00 41.30 4.85
808 823 1.065401 CTGAAAGTGCCAGAACGCAAA 59.935 47.619 0.00 0.00 41.30 3.68
809 824 1.474478 TGAAAGTGCCAGAACGCAAAA 59.526 42.857 0.00 0.00 41.30 2.44
810 825 2.094494 TGAAAGTGCCAGAACGCAAAAA 60.094 40.909 0.00 0.00 41.30 1.94
811 826 1.921243 AAGTGCCAGAACGCAAAAAC 58.079 45.000 0.00 0.00 41.30 2.43
812 827 0.814457 AGTGCCAGAACGCAAAAACA 59.186 45.000 0.00 0.00 41.30 2.83
813 828 1.203523 AGTGCCAGAACGCAAAAACAA 59.796 42.857 0.00 0.00 41.30 2.83
814 829 1.996191 GTGCCAGAACGCAAAAACAAA 59.004 42.857 0.00 0.00 41.30 2.83
815 830 2.413453 GTGCCAGAACGCAAAAACAAAA 59.587 40.909 0.00 0.00 41.30 2.44
816 831 3.063316 GTGCCAGAACGCAAAAACAAAAT 59.937 39.130 0.00 0.00 41.30 1.82
817 832 4.268884 GTGCCAGAACGCAAAAACAAAATA 59.731 37.500 0.00 0.00 41.30 1.40
818 833 4.505922 TGCCAGAACGCAAAAACAAAATAG 59.494 37.500 0.00 0.00 35.32 1.73
819 834 4.742659 GCCAGAACGCAAAAACAAAATAGA 59.257 37.500 0.00 0.00 0.00 1.98
820 835 5.233263 GCCAGAACGCAAAAACAAAATAGAA 59.767 36.000 0.00 0.00 0.00 2.10
821 836 6.562086 GCCAGAACGCAAAAACAAAATAGAAG 60.562 38.462 0.00 0.00 0.00 2.85
822 837 6.074356 CCAGAACGCAAAAACAAAATAGAAGG 60.074 38.462 0.00 0.00 0.00 3.46
823 838 6.695278 CAGAACGCAAAAACAAAATAGAAGGA 59.305 34.615 0.00 0.00 0.00 3.36
824 839 7.221838 CAGAACGCAAAAACAAAATAGAAGGAA 59.778 33.333 0.00 0.00 0.00 3.36
825 840 6.822073 ACGCAAAAACAAAATAGAAGGAAC 57.178 33.333 0.00 0.00 0.00 3.62
826 841 5.751509 ACGCAAAAACAAAATAGAAGGAACC 59.248 36.000 0.00 0.00 0.00 3.62
827 842 5.176774 CGCAAAAACAAAATAGAAGGAACCC 59.823 40.000 0.00 0.00 0.00 4.11
828 843 6.052360 GCAAAAACAAAATAGAAGGAACCCA 58.948 36.000 0.00 0.00 0.00 4.51
829 844 6.018262 GCAAAAACAAAATAGAAGGAACCCAC 60.018 38.462 0.00 0.00 0.00 4.61
830 845 5.447624 AAACAAAATAGAAGGAACCCACG 57.552 39.130 0.00 0.00 0.00 4.94
831 846 4.360951 ACAAAATAGAAGGAACCCACGA 57.639 40.909 0.00 0.00 0.00 4.35
832 847 4.324267 ACAAAATAGAAGGAACCCACGAG 58.676 43.478 0.00 0.00 0.00 4.18
833 848 3.629142 AAATAGAAGGAACCCACGAGG 57.371 47.619 0.00 0.00 43.78 4.63
834 849 0.831307 ATAGAAGGAACCCACGAGGC 59.169 55.000 0.00 0.00 40.58 4.70
835 850 1.262640 TAGAAGGAACCCACGAGGCC 61.263 60.000 0.00 0.00 40.58 5.19
836 851 2.852075 AAGGAACCCACGAGGCCA 60.852 61.111 5.01 0.00 40.58 5.36
837 852 3.192103 AAGGAACCCACGAGGCCAC 62.192 63.158 5.01 0.00 40.58 5.01
839 854 3.998672 GAACCCACGAGGCCACGA 61.999 66.667 29.67 0.00 40.58 4.35
840 855 3.934391 GAACCCACGAGGCCACGAG 62.934 68.421 29.67 20.98 40.58 4.18
854 869 4.308458 CGAGCCCCACGACCACAA 62.308 66.667 0.00 0.00 0.00 3.33
855 870 2.112297 GAGCCCCACGACCACAAA 59.888 61.111 0.00 0.00 0.00 2.83
856 871 1.527380 GAGCCCCACGACCACAAAA 60.527 57.895 0.00 0.00 0.00 2.44
857 872 1.076632 AGCCCCACGACCACAAAAA 60.077 52.632 0.00 0.00 0.00 1.94
858 873 1.066752 GCCCCACGACCACAAAAAC 59.933 57.895 0.00 0.00 0.00 2.43
859 874 1.357334 CCCCACGACCACAAAAACG 59.643 57.895 0.00 0.00 0.00 3.60
860 875 1.096386 CCCCACGACCACAAAAACGA 61.096 55.000 0.00 0.00 0.00 3.85
861 876 0.948678 CCCACGACCACAAAAACGAT 59.051 50.000 0.00 0.00 0.00 3.73
862 877 1.069500 CCCACGACCACAAAAACGATC 60.069 52.381 0.00 0.00 0.00 3.69
863 878 1.600013 CCACGACCACAAAAACGATCA 59.400 47.619 0.00 0.00 0.00 2.92
864 879 2.225491 CCACGACCACAAAAACGATCAT 59.775 45.455 0.00 0.00 0.00 2.45
865 880 3.479006 CACGACCACAAAAACGATCATC 58.521 45.455 0.00 0.00 0.00 2.92
866 881 3.186409 CACGACCACAAAAACGATCATCT 59.814 43.478 0.00 0.00 0.00 2.90
867 882 3.432252 ACGACCACAAAAACGATCATCTC 59.568 43.478 0.00 0.00 0.00 2.75
868 883 3.181520 CGACCACAAAAACGATCATCTCC 60.182 47.826 0.00 0.00 0.00 3.71
869 884 4.003648 GACCACAAAAACGATCATCTCCT 58.996 43.478 0.00 0.00 0.00 3.69
870 885 4.003648 ACCACAAAAACGATCATCTCCTC 58.996 43.478 0.00 0.00 0.00 3.71
871 886 3.375299 CCACAAAAACGATCATCTCCTCC 59.625 47.826 0.00 0.00 0.00 4.30
872 887 4.256920 CACAAAAACGATCATCTCCTCCT 58.743 43.478 0.00 0.00 0.00 3.69
873 888 4.331168 CACAAAAACGATCATCTCCTCCTC 59.669 45.833 0.00 0.00 0.00 3.71
874 889 3.828875 AAAACGATCATCTCCTCCTCC 57.171 47.619 0.00 0.00 0.00 4.30
875 890 1.710816 AACGATCATCTCCTCCTCCC 58.289 55.000 0.00 0.00 0.00 4.30
876 891 0.856982 ACGATCATCTCCTCCTCCCT 59.143 55.000 0.00 0.00 0.00 4.20
877 892 1.203001 ACGATCATCTCCTCCTCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
878 893 1.890573 CGATCATCTCCTCCTCCCTCC 60.891 61.905 0.00 0.00 0.00 4.30
879 894 0.491371 ATCATCTCCTCCTCCCTCCC 59.509 60.000 0.00 0.00 0.00 4.30
880 895 0.631998 TCATCTCCTCCTCCCTCCCT 60.632 60.000 0.00 0.00 0.00 4.20
881 896 0.178935 CATCTCCTCCTCCCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
882 897 1.376249 ATCTCCTCCTCCCTCCCTCC 61.376 65.000 0.00 0.00 0.00 4.30
883 898 3.430497 TCCTCCTCCCTCCCTCCG 61.430 72.222 0.00 0.00 0.00 4.63
885 900 4.150454 CTCCTCCCTCCCTCCGCT 62.150 72.222 0.00 0.00 0.00 5.52
886 901 3.684628 TCCTCCCTCCCTCCGCTT 61.685 66.667 0.00 0.00 0.00 4.68
887 902 3.157949 CCTCCCTCCCTCCGCTTC 61.158 72.222 0.00 0.00 0.00 3.86
888 903 3.532155 CTCCCTCCCTCCGCTTCG 61.532 72.222 0.00 0.00 0.00 3.79
891 906 2.833582 CCTCCCTCCGCTTCGCTA 60.834 66.667 0.00 0.00 0.00 4.26
892 907 2.203771 CCTCCCTCCGCTTCGCTAT 61.204 63.158 0.00 0.00 0.00 2.97
893 908 1.742768 CTCCCTCCGCTTCGCTATT 59.257 57.895 0.00 0.00 0.00 1.73
894 909 0.105039 CTCCCTCCGCTTCGCTATTT 59.895 55.000 0.00 0.00 0.00 1.40
895 910 0.179084 TCCCTCCGCTTCGCTATTTG 60.179 55.000 0.00 0.00 0.00 2.32
896 911 1.643832 CCTCCGCTTCGCTATTTGC 59.356 57.895 0.00 0.00 38.57 3.68
897 912 0.811616 CCTCCGCTTCGCTATTTGCT 60.812 55.000 0.00 0.00 40.11 3.91
898 913 1.009829 CTCCGCTTCGCTATTTGCTT 58.990 50.000 0.00 0.00 40.11 3.91
899 914 1.398390 CTCCGCTTCGCTATTTGCTTT 59.602 47.619 0.00 0.00 40.11 3.51
900 915 1.810151 TCCGCTTCGCTATTTGCTTTT 59.190 42.857 0.00 0.00 40.11 2.27
901 916 2.159572 TCCGCTTCGCTATTTGCTTTTC 60.160 45.455 0.00 0.00 40.11 2.29
902 917 2.414029 CCGCTTCGCTATTTGCTTTTCA 60.414 45.455 0.00 0.00 40.11 2.69
903 918 3.429085 CGCTTCGCTATTTGCTTTTCAT 58.571 40.909 0.00 0.00 40.11 2.57
904 919 4.495679 CCGCTTCGCTATTTGCTTTTCATA 60.496 41.667 0.00 0.00 40.11 2.15
905 920 5.207768 CGCTTCGCTATTTGCTTTTCATAT 58.792 37.500 0.00 0.00 40.11 1.78
906 921 6.362686 CGCTTCGCTATTTGCTTTTCATATA 58.637 36.000 0.00 0.00 40.11 0.86
907 922 6.517714 CGCTTCGCTATTTGCTTTTCATATAG 59.482 38.462 0.00 0.00 38.76 1.31
917 932 6.785488 TGCTTTTCATATAGCCATAACTCG 57.215 37.500 0.00 0.00 36.56 4.18
918 933 5.700832 TGCTTTTCATATAGCCATAACTCGG 59.299 40.000 0.00 0.00 36.56 4.63
924 939 4.760757 GCCATAACTCGGCTCCTC 57.239 61.111 0.00 0.00 46.56 3.71
925 940 1.069935 GCCATAACTCGGCTCCTCC 59.930 63.158 0.00 0.00 46.56 4.30
926 941 1.686325 GCCATAACTCGGCTCCTCCA 61.686 60.000 0.00 0.00 46.56 3.86
927 942 1.051812 CCATAACTCGGCTCCTCCAT 58.948 55.000 0.00 0.00 34.01 3.41
928 943 1.417890 CCATAACTCGGCTCCTCCATT 59.582 52.381 0.00 0.00 34.01 3.16
929 944 2.487934 CATAACTCGGCTCCTCCATTG 58.512 52.381 0.00 0.00 34.01 2.82
930 945 0.178068 TAACTCGGCTCCTCCATTGC 59.822 55.000 0.00 0.00 34.01 3.56
931 946 1.557269 AACTCGGCTCCTCCATTGCT 61.557 55.000 0.00 0.00 34.01 3.91
932 947 1.227497 CTCGGCTCCTCCATTGCTC 60.227 63.158 0.00 0.00 34.01 4.26
933 948 2.203126 CGGCTCCTCCATTGCTCC 60.203 66.667 0.00 0.00 34.01 4.70
934 949 2.739996 CGGCTCCTCCATTGCTCCT 61.740 63.158 0.00 0.00 34.01 3.69
935 950 1.611965 GGCTCCTCCATTGCTCCTT 59.388 57.895 0.00 0.00 34.01 3.36
936 951 0.033699 GGCTCCTCCATTGCTCCTTT 60.034 55.000 0.00 0.00 34.01 3.11
937 952 1.618074 GGCTCCTCCATTGCTCCTTTT 60.618 52.381 0.00 0.00 34.01 2.27
938 953 1.747924 GCTCCTCCATTGCTCCTTTTC 59.252 52.381 0.00 0.00 0.00 2.29
939 954 2.373224 CTCCTCCATTGCTCCTTTTCC 58.627 52.381 0.00 0.00 0.00 3.13
940 955 1.710244 TCCTCCATTGCTCCTTTTCCA 59.290 47.619 0.00 0.00 0.00 3.53
941 956 2.097825 CCTCCATTGCTCCTTTTCCAG 58.902 52.381 0.00 0.00 0.00 3.86
942 957 1.475682 CTCCATTGCTCCTTTTCCAGC 59.524 52.381 0.00 0.00 36.08 4.85
943 958 0.533951 CCATTGCTCCTTTTCCAGCC 59.466 55.000 0.00 0.00 34.47 4.85
944 959 1.553706 CATTGCTCCTTTTCCAGCCT 58.446 50.000 0.00 0.00 34.47 4.58
945 960 1.475682 CATTGCTCCTTTTCCAGCCTC 59.524 52.381 0.00 0.00 34.47 4.70
946 961 0.251341 TTGCTCCTTTTCCAGCCTCC 60.251 55.000 0.00 0.00 34.47 4.30
947 962 1.379176 GCTCCTTTTCCAGCCTCCC 60.379 63.158 0.00 0.00 0.00 4.30
948 963 1.078143 CTCCTTTTCCAGCCTCCCG 60.078 63.158 0.00 0.00 0.00 5.14
949 964 2.751837 CCTTTTCCAGCCTCCCGC 60.752 66.667 0.00 0.00 37.98 6.13
1007 1022 4.962836 CGCCCCATCCATGGCCTC 62.963 72.222 6.96 0.00 46.70 4.70
1008 1023 3.505773 GCCCCATCCATGGCCTCT 61.506 66.667 6.96 0.00 46.70 3.69
1009 1024 2.842058 CCCCATCCATGGCCTCTC 59.158 66.667 6.96 0.00 46.70 3.20
1010 1025 2.429058 CCCATCCATGGCCTCTCG 59.571 66.667 6.96 0.00 46.70 4.04
1011 1026 2.142761 CCCATCCATGGCCTCTCGA 61.143 63.158 6.96 0.00 46.70 4.04
1012 1027 1.699054 CCCATCCATGGCCTCTCGAA 61.699 60.000 6.96 0.00 46.70 3.71
1013 1028 0.181114 CCATCCATGGCCTCTCGAAA 59.819 55.000 6.96 0.00 41.75 3.46
1014 1029 1.202855 CCATCCATGGCCTCTCGAAAT 60.203 52.381 6.96 0.00 41.75 2.17
1015 1030 2.149578 CATCCATGGCCTCTCGAAATC 58.850 52.381 6.96 0.00 0.00 2.17
1029 1095 0.178961 GAAATCATGGCCCTACCCCC 60.179 60.000 0.00 0.00 37.83 5.40
1187 1281 2.506438 GTTCGCGTTCCTCTCGGG 60.506 66.667 5.77 0.00 41.36 5.14
1455 1549 2.665000 CGGCTCATGTGGGTCACT 59.335 61.111 0.00 0.00 35.11 3.41
1497 1591 2.620886 CCTCTTCTCCTTCGGGTCAGTA 60.621 54.545 0.00 0.00 36.28 2.74
1498 1592 3.292460 CTCTTCTCCTTCGGGTCAGTAT 58.708 50.000 0.00 0.00 36.28 2.12
1499 1593 4.462133 CTCTTCTCCTTCGGGTCAGTATA 58.538 47.826 0.00 0.00 36.28 1.47
1500 1594 5.063017 TCTTCTCCTTCGGGTCAGTATAT 57.937 43.478 0.00 0.00 36.28 0.86
1501 1595 6.196918 TCTTCTCCTTCGGGTCAGTATATA 57.803 41.667 0.00 0.00 36.28 0.86
1506 1600 4.353191 TCCTTCGGGTCAGTATATACCTCT 59.647 45.833 9.32 0.00 35.97 3.69
1611 1705 2.510238 CCGCTGGGAAGCTTCGAG 60.510 66.667 19.91 17.84 34.06 4.04
1752 1848 4.314440 ACGTGTGTGGGCAGCGAT 62.314 61.111 0.00 0.00 0.00 4.58
1926 2023 0.687354 ACTGATTCTTGCACGGTCCT 59.313 50.000 0.00 0.00 0.00 3.85
1967 2064 3.146066 TGCTTGGGTTTGTAGATCACAC 58.854 45.455 0.00 0.00 36.69 3.82
1968 2065 3.146066 GCTTGGGTTTGTAGATCACACA 58.854 45.455 0.00 0.00 36.69 3.72
1980 2077 3.225104 AGATCACACAACATTGCTGGTT 58.775 40.909 0.00 0.00 0.00 3.67
1982 2079 3.980646 TCACACAACATTGCTGGTTAC 57.019 42.857 0.00 0.00 0.00 2.50
1985 2082 4.023279 TCACACAACATTGCTGGTTACATC 60.023 41.667 0.00 0.00 0.00 3.06
1987 2084 3.507233 CACAACATTGCTGGTTACATCCT 59.493 43.478 0.00 0.00 0.00 3.24
1989 2086 4.022068 ACAACATTGCTGGTTACATCCTTG 60.022 41.667 0.00 0.00 0.00 3.61
1990 2087 3.766545 ACATTGCTGGTTACATCCTTGT 58.233 40.909 0.00 0.00 39.98 3.16
1991 2088 4.151883 ACATTGCTGGTTACATCCTTGTT 58.848 39.130 0.00 0.00 37.28 2.83
1992 2089 5.321102 ACATTGCTGGTTACATCCTTGTTA 58.679 37.500 0.00 0.00 37.28 2.41
1994 2091 6.437162 ACATTGCTGGTTACATCCTTGTTAAT 59.563 34.615 0.00 0.00 37.28 1.40
1996 2093 6.995511 TGCTGGTTACATCCTTGTTAATAC 57.004 37.500 0.00 0.00 37.28 1.89
1997 2094 5.883673 TGCTGGTTACATCCTTGTTAATACC 59.116 40.000 0.00 0.00 37.28 2.73
1998 2095 5.298527 GCTGGTTACATCCTTGTTAATACCC 59.701 44.000 0.00 0.00 37.28 3.69
1999 2096 6.390048 TGGTTACATCCTTGTTAATACCCA 57.610 37.500 0.00 0.00 37.28 4.51
2001 2098 6.887545 TGGTTACATCCTTGTTAATACCCAAG 59.112 38.462 0.00 0.00 37.28 3.61
2013 2119 2.445682 TACCCAAGGAGAGAGAGAGC 57.554 55.000 0.00 0.00 0.00 4.09
2014 2120 0.709992 ACCCAAGGAGAGAGAGAGCT 59.290 55.000 0.00 0.00 0.00 4.09
2015 2121 1.926665 ACCCAAGGAGAGAGAGAGCTA 59.073 52.381 0.00 0.00 0.00 3.32
2097 2204 1.485895 CCTTGTTAATTGGGGGCATGG 59.514 52.381 0.00 0.00 0.00 3.66
2229 2337 2.259012 TGTGGGGTGTACGACCTTATT 58.741 47.619 12.36 0.00 45.33 1.40
2252 2360 4.824537 TCTTTACACAACTGGCAATTGCTA 59.175 37.500 28.42 22.55 41.70 3.49
2254 2362 5.720371 TTACACAACTGGCAATTGCTAAT 57.280 34.783 28.42 11.57 41.70 1.73
2271 2379 9.651913 AATTGCTAATTTGAACGTTTTGGATAT 57.348 25.926 0.46 0.00 0.00 1.63
2317 2425 1.308998 GTCAAAGTGGTGACTGGTGG 58.691 55.000 0.00 0.00 43.82 4.61
2340 2449 2.755952 ACCTTGCTTCAAACCTTCCT 57.244 45.000 0.00 0.00 0.00 3.36
2374 2483 5.596845 TGAAAAGCTAACTGGCGAAAAATT 58.403 33.333 0.00 0.00 37.29 1.82
2440 2549 2.552599 TCTGGTTTTGACCGCATACA 57.447 45.000 0.00 0.00 0.00 2.29
2489 2598 9.964354 ATGCTATTGAATACTGCCTGATATTTA 57.036 29.630 0.00 0.00 0.00 1.40
2701 2810 0.530744 AAGAGCAATGCAGGCATGTG 59.469 50.000 8.35 9.26 36.68 3.21
2872 2981 0.337428 ATGCTTCCCATCAGGCCTTT 59.663 50.000 0.00 0.00 34.51 3.11
2947 3056 9.615295 GGCGTAACTGATTTTAAAAGTTGATTA 57.385 29.630 12.12 3.39 35.77 1.75
3567 3684 4.199310 TCCTATGGTTTCTGTAGCAATGC 58.801 43.478 0.00 0.00 0.00 3.56
3574 3691 1.655484 TCTGTAGCAATGCGGTCATG 58.345 50.000 0.00 0.00 32.23 3.07
3698 3815 0.965866 GCTGGAAAGGTAACAGGCCC 60.966 60.000 0.00 0.00 41.41 5.80
3736 3855 7.497249 GTCTCTATTCTAAATTCATGTGCCAGT 59.503 37.037 0.00 0.00 0.00 4.00
3764 3884 4.165372 ACCTTGTTTTCTGGAGTCCTTACA 59.835 41.667 11.33 4.71 0.00 2.41
3817 3937 1.452651 CTGGAGATGGGCATGCGTT 60.453 57.895 12.44 0.00 0.00 4.84
4218 4339 2.029290 GGCTCTTTCCGAAGTACTGTGA 60.029 50.000 0.00 0.00 34.41 3.58
4255 4376 9.926158 CAGCTATGTGATAGTATCTGATTTTCT 57.074 33.333 11.40 0.00 35.29 2.52
4450 4571 7.609960 TGCTTAAAGGATGCAACATTATTTCA 58.390 30.769 0.00 0.00 35.40 2.69
4647 4770 9.090692 CAAATACCATCAAGCTTAATTTCCTTG 57.909 33.333 0.00 6.24 37.80 3.61
4650 4773 6.928520 ACCATCAAGCTTAATTTCCTTGAAG 58.071 36.000 14.83 11.85 45.45 3.02
4667 4790 6.757947 TCCTTGAAGCAAAATTGACAGAAAAG 59.242 34.615 0.00 0.00 0.00 2.27
4671 4794 8.406172 TGAAGCAAAATTGACAGAAAAGTTAC 57.594 30.769 0.00 0.00 0.00 2.50
4768 4892 3.133691 CCATCACATTCCGACAGGTATG 58.866 50.000 3.17 3.17 46.78 2.39
4769 4893 2.979814 TCACATTCCGACAGGTATGG 57.020 50.000 8.59 0.00 45.99 2.74
4865 5041 1.206132 TCCTAACATGCTACCACGGTG 59.794 52.381 0.00 0.00 0.00 4.94
5000 5176 1.565390 ATCCCTTGCACAGCTAGCCA 61.565 55.000 12.13 0.00 30.63 4.75
5006 5182 2.046892 CACAGCTAGCCAACGCCT 60.047 61.111 12.13 0.00 34.57 5.52
5227 5424 2.648059 CCTTTCATGATCGCCCTCTTT 58.352 47.619 0.00 0.00 0.00 2.52
5368 5598 5.902431 AGATCAAAGTCCAGCTTATACCTCT 59.098 40.000 0.00 0.00 36.17 3.69
5378 5608 2.906354 CTTATACCTCTGCCGCTTTGT 58.094 47.619 0.00 0.00 0.00 2.83
5436 5666 7.465245 GCAATTTTGTTCCATTTGTTCTTCGAA 60.465 33.333 0.00 0.00 0.00 3.71
5445 5675 5.506317 CCATTTGTTCTTCGAAGGGATATGC 60.506 44.000 24.37 8.08 42.22 3.14
5454 5686 4.586884 TCGAAGGGATATGCGTAGATAGT 58.413 43.478 0.00 0.00 0.00 2.12
5529 5769 6.149474 ACATAGAAAGCACCTGTAACATCAAC 59.851 38.462 0.00 0.00 0.00 3.18
5556 5796 8.940397 AGAAGTTTTTGGGAAGATAATTCTGA 57.060 30.769 0.00 0.00 30.72 3.27
5577 5817 5.250200 TGACTTTCCCTTGCACGTTTATAT 58.750 37.500 0.00 0.00 0.00 0.86
5580 5820 5.944007 ACTTTCCCTTGCACGTTTATATCTT 59.056 36.000 0.00 0.00 0.00 2.40
5581 5821 6.433093 ACTTTCCCTTGCACGTTTATATCTTT 59.567 34.615 0.00 0.00 0.00 2.52
5596 5836 9.459640 GTTTATATCTTTAGTACTGCACGATCA 57.540 33.333 5.39 0.00 0.00 2.92
5635 5875 7.272244 TGAGATAAGTGTGAGAAAACAAGTCA 58.728 34.615 0.00 0.00 0.00 3.41
5640 5880 3.331150 TGTGAGAAAACAAGTCACACGT 58.669 40.909 0.32 0.00 44.35 4.49
5646 5886 3.944422 AAACAAGTCACACGTCATCAC 57.056 42.857 0.00 0.00 0.00 3.06
5647 5887 2.595124 ACAAGTCACACGTCATCACA 57.405 45.000 0.00 0.00 0.00 3.58
5648 5888 3.111853 ACAAGTCACACGTCATCACAT 57.888 42.857 0.00 0.00 0.00 3.21
5649 5889 3.466836 ACAAGTCACACGTCATCACATT 58.533 40.909 0.00 0.00 0.00 2.71
5653 5893 1.799994 TCACACGTCATCACATTGCAG 59.200 47.619 0.00 0.00 0.00 4.41
5654 5894 0.518636 ACACGTCATCACATTGCAGC 59.481 50.000 0.00 0.00 0.00 5.25
5655 5895 0.519792 CACGTCATCACATTGCAGCG 60.520 55.000 0.00 0.00 0.00 5.18
5656 5896 0.950555 ACGTCATCACATTGCAGCGT 60.951 50.000 0.00 0.00 0.00 5.07
5658 5898 1.400113 CGTCATCACATTGCAGCGTTT 60.400 47.619 0.00 0.00 0.00 3.60
5659 5899 2.245096 GTCATCACATTGCAGCGTTTC 58.755 47.619 0.00 0.00 0.00 2.78
5660 5900 1.199789 TCATCACATTGCAGCGTTTCC 59.800 47.619 0.00 0.00 0.00 3.13
5661 5901 1.068402 CATCACATTGCAGCGTTTCCA 60.068 47.619 0.00 0.00 0.00 3.53
5678 5930 4.336889 TTCCAAGACGATGAGTTGAGTT 57.663 40.909 0.00 0.00 0.00 3.01
5702 5954 3.139077 CTCAGTAGGCAAGACGGTTTTT 58.861 45.455 0.00 0.00 0.00 1.94
5741 5993 5.068234 AGTTTGATCAATCACATTGCAGG 57.932 39.130 16.79 0.00 40.05 4.85
5824 6076 6.621613 ACACAAGAGAAAACAAAGGAGAAAC 58.378 36.000 0.00 0.00 0.00 2.78
5851 6103 3.630312 AGAGCTAAAAACAAGAAACGGCA 59.370 39.130 0.00 0.00 0.00 5.69
6056 6319 1.817357 TGACCTCTGCTGCAGAATTG 58.183 50.000 30.00 22.77 40.18 2.32
6068 6331 4.044336 TGCAGAATTGAAACCACAAGTG 57.956 40.909 0.00 0.00 33.22 3.16
6086 6351 5.297776 ACAAGTGATTCAGACAAGTGAAAGG 59.702 40.000 0.00 0.00 39.84 3.11
6110 6377 3.625764 TGAACCGGCTGCATAAGAATTAC 59.374 43.478 0.00 0.00 30.46 1.89
6157 6552 0.255890 GCCAGGACAAAGATAGGCCA 59.744 55.000 5.01 0.00 36.17 5.36
6158 6553 2.019156 GCCAGGACAAAGATAGGCCAC 61.019 57.143 5.01 0.00 36.17 5.01
6159 6554 1.408822 CCAGGACAAAGATAGGCCACC 60.409 57.143 5.01 0.00 0.00 4.61
6199 6594 8.992073 CGATTGTGAATCATTGATACCATAAGA 58.008 33.333 0.00 0.00 37.78 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.428159 AGACTAAGCCGGCATATCATTTTAAG 59.572 38.462 31.54 10.08 0.00 1.85
1 2 6.296026 AGACTAAGCCGGCATATCATTTTAA 58.704 36.000 31.54 0.00 0.00 1.52
2 3 5.865085 AGACTAAGCCGGCATATCATTTTA 58.135 37.500 31.54 14.48 0.00 1.52
3 4 4.718961 AGACTAAGCCGGCATATCATTTT 58.281 39.130 31.54 14.07 0.00 1.82
4 5 4.040952 AGAGACTAAGCCGGCATATCATTT 59.959 41.667 31.54 14.88 0.00 2.32
5 6 3.580458 AGAGACTAAGCCGGCATATCATT 59.420 43.478 31.54 15.69 0.00 2.57
6 7 3.169099 AGAGACTAAGCCGGCATATCAT 58.831 45.455 31.54 10.36 0.00 2.45
7 8 2.598565 AGAGACTAAGCCGGCATATCA 58.401 47.619 31.54 7.27 0.00 2.15
8 9 3.005897 TCAAGAGACTAAGCCGGCATATC 59.994 47.826 31.54 19.70 0.00 1.63
9 10 2.965831 TCAAGAGACTAAGCCGGCATAT 59.034 45.455 31.54 17.05 0.00 1.78
10 11 2.384828 TCAAGAGACTAAGCCGGCATA 58.615 47.619 31.54 21.29 0.00 3.14
11 12 1.195115 TCAAGAGACTAAGCCGGCAT 58.805 50.000 31.54 21.32 0.00 4.40
12 13 0.973632 TTCAAGAGACTAAGCCGGCA 59.026 50.000 31.54 7.98 0.00 5.69
13 14 1.646189 CTTCAAGAGACTAAGCCGGC 58.354 55.000 21.89 21.89 0.00 6.13
14 15 1.550976 ACCTTCAAGAGACTAAGCCGG 59.449 52.381 0.00 0.00 0.00 6.13
15 16 2.611518 CACCTTCAAGAGACTAAGCCG 58.388 52.381 0.00 0.00 0.00 5.52
16 17 2.027653 AGCACCTTCAAGAGACTAAGCC 60.028 50.000 0.00 0.00 0.00 4.35
17 18 3.258228 GAGCACCTTCAAGAGACTAAGC 58.742 50.000 0.00 0.00 0.00 3.09
18 19 4.527509 TGAGCACCTTCAAGAGACTAAG 57.472 45.455 0.00 0.00 0.00 2.18
19 20 5.127845 CCTATGAGCACCTTCAAGAGACTAA 59.872 44.000 0.00 0.00 0.00 2.24
20 21 4.646945 CCTATGAGCACCTTCAAGAGACTA 59.353 45.833 0.00 0.00 0.00 2.59
21 22 3.450457 CCTATGAGCACCTTCAAGAGACT 59.550 47.826 0.00 0.00 0.00 3.24
22 23 3.431486 CCCTATGAGCACCTTCAAGAGAC 60.431 52.174 0.00 0.00 0.00 3.36
23 24 2.768527 CCCTATGAGCACCTTCAAGAGA 59.231 50.000 0.00 0.00 0.00 3.10
24 25 2.158842 CCCCTATGAGCACCTTCAAGAG 60.159 54.545 0.00 0.00 0.00 2.85
25 26 1.839994 CCCCTATGAGCACCTTCAAGA 59.160 52.381 0.00 0.00 0.00 3.02
26 27 1.561542 ACCCCTATGAGCACCTTCAAG 59.438 52.381 0.00 0.00 0.00 3.02
27 28 1.668826 ACCCCTATGAGCACCTTCAA 58.331 50.000 0.00 0.00 0.00 2.69
28 29 2.398588 CTACCCCTATGAGCACCTTCA 58.601 52.381 0.00 0.00 0.00 3.02
29 30 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
30 31 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
31 32 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
32 33 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
33 34 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
34 35 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
35 36 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
36 37 1.762957 CACACACCCTACCCCTATGAG 59.237 57.143 0.00 0.00 0.00 2.90
37 38 1.079825 ACACACACCCTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
38 39 1.580059 ACACACACCCTACCCCTATG 58.420 55.000 0.00 0.00 0.00 2.23
39 40 2.307686 CAAACACACACCCTACCCCTAT 59.692 50.000 0.00 0.00 0.00 2.57
40 41 1.700739 CAAACACACACCCTACCCCTA 59.299 52.381 0.00 0.00 0.00 3.53
41 42 0.476771 CAAACACACACCCTACCCCT 59.523 55.000 0.00 0.00 0.00 4.79
42 43 0.184211 ACAAACACACACCCTACCCC 59.816 55.000 0.00 0.00 0.00 4.95
43 44 1.314730 CACAAACACACACCCTACCC 58.685 55.000 0.00 0.00 0.00 3.69
44 45 0.666374 GCACAAACACACACCCTACC 59.334 55.000 0.00 0.00 0.00 3.18
45 46 0.306533 CGCACAAACACACACCCTAC 59.693 55.000 0.00 0.00 0.00 3.18
46 47 0.107606 ACGCACAAACACACACCCTA 60.108 50.000 0.00 0.00 0.00 3.53
47 48 0.963355 AACGCACAAACACACACCCT 60.963 50.000 0.00 0.00 0.00 4.34
48 49 0.524604 GAACGCACAAACACACACCC 60.525 55.000 0.00 0.00 0.00 4.61
49 50 0.859788 CGAACGCACAAACACACACC 60.860 55.000 0.00 0.00 0.00 4.16
50 51 0.179210 ACGAACGCACAAACACACAC 60.179 50.000 0.00 0.00 0.00 3.82
51 52 1.325037 CTACGAACGCACAAACACACA 59.675 47.619 0.00 0.00 0.00 3.72
52 53 1.589320 TCTACGAACGCACAAACACAC 59.411 47.619 0.00 0.00 0.00 3.82
53 54 1.855978 CTCTACGAACGCACAAACACA 59.144 47.619 0.00 0.00 0.00 3.72
54 55 1.191647 CCTCTACGAACGCACAAACAC 59.808 52.381 0.00 0.00 0.00 3.32
55 56 1.202440 ACCTCTACGAACGCACAAACA 60.202 47.619 0.00 0.00 0.00 2.83
56 57 1.191647 CACCTCTACGAACGCACAAAC 59.808 52.381 0.00 0.00 0.00 2.93
57 58 1.067364 TCACCTCTACGAACGCACAAA 59.933 47.619 0.00 0.00 0.00 2.83
58 59 0.669619 TCACCTCTACGAACGCACAA 59.330 50.000 0.00 0.00 0.00 3.33
59 60 0.240145 CTCACCTCTACGAACGCACA 59.760 55.000 0.00 0.00 0.00 4.57
60 61 0.240411 ACTCACCTCTACGAACGCAC 59.760 55.000 0.00 0.00 0.00 5.34
61 62 0.240145 CACTCACCTCTACGAACGCA 59.760 55.000 0.00 0.00 0.00 5.24
62 63 0.240411 ACACTCACCTCTACGAACGC 59.760 55.000 0.00 0.00 0.00 4.84
63 64 3.681855 CATACACTCACCTCTACGAACG 58.318 50.000 0.00 0.00 0.00 3.95
64 65 3.436496 GCATACACTCACCTCTACGAAC 58.564 50.000 0.00 0.00 0.00 3.95
65 66 2.096980 CGCATACACTCACCTCTACGAA 59.903 50.000 0.00 0.00 0.00 3.85
66 67 1.669265 CGCATACACTCACCTCTACGA 59.331 52.381 0.00 0.00 0.00 3.43
67 68 1.860399 GCGCATACACTCACCTCTACG 60.860 57.143 0.30 0.00 0.00 3.51
68 69 1.841450 GCGCATACACTCACCTCTAC 58.159 55.000 0.30 0.00 0.00 2.59
69 70 0.380733 CGCGCATACACTCACCTCTA 59.619 55.000 8.75 0.00 0.00 2.43
70 71 1.139734 CGCGCATACACTCACCTCT 59.860 57.895 8.75 0.00 0.00 3.69
71 72 0.099968 TACGCGCATACACTCACCTC 59.900 55.000 5.73 0.00 0.00 3.85
72 73 0.744874 ATACGCGCATACACTCACCT 59.255 50.000 5.73 0.00 0.00 4.00
73 74 0.852777 CATACGCGCATACACTCACC 59.147 55.000 5.73 0.00 0.00 4.02
74 75 1.556564 ACATACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
75 76 3.003897 TCATACATACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
76 77 3.561503 TCATACATACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
77 78 3.004419 ACTCATACATACGCGCATACACT 59.996 43.478 5.73 0.00 0.00 3.55
78 79 3.119628 CACTCATACATACGCGCATACAC 59.880 47.826 5.73 0.00 0.00 2.90
79 80 3.305110 CACTCATACATACGCGCATACA 58.695 45.455 5.73 0.00 0.00 2.29
80 81 2.090658 GCACTCATACATACGCGCATAC 59.909 50.000 5.73 0.00 0.00 2.39
81 82 2.030274 AGCACTCATACATACGCGCATA 60.030 45.455 5.73 0.00 0.00 3.14
82 83 1.139989 GCACTCATACATACGCGCAT 58.860 50.000 5.73 0.00 0.00 4.73
83 84 0.102300 AGCACTCATACATACGCGCA 59.898 50.000 5.73 0.00 0.00 6.09
84 85 1.071239 CAAGCACTCATACATACGCGC 60.071 52.381 5.73 0.00 0.00 6.86
85 86 1.071239 GCAAGCACTCATACATACGCG 60.071 52.381 3.53 3.53 0.00 6.01
86 87 1.071239 CGCAAGCACTCATACATACGC 60.071 52.381 0.00 0.00 0.00 4.42
87 88 2.193447 ACGCAAGCACTCATACATACG 58.807 47.619 0.00 0.00 45.62 3.06
88 89 3.243877 CAGACGCAAGCACTCATACATAC 59.756 47.826 0.00 0.00 45.62 2.39
89 90 3.119137 ACAGACGCAAGCACTCATACATA 60.119 43.478 0.00 0.00 45.62 2.29
90 91 2.274437 CAGACGCAAGCACTCATACAT 58.726 47.619 0.00 0.00 45.62 2.29
91 92 1.000843 ACAGACGCAAGCACTCATACA 59.999 47.619 0.00 0.00 45.62 2.29
92 93 1.714794 ACAGACGCAAGCACTCATAC 58.285 50.000 0.00 0.00 45.62 2.39
93 94 2.416836 GGTACAGACGCAAGCACTCATA 60.417 50.000 0.00 0.00 45.62 2.15
94 95 1.673033 GGTACAGACGCAAGCACTCAT 60.673 52.381 0.00 0.00 45.62 2.90
95 96 0.319555 GGTACAGACGCAAGCACTCA 60.320 55.000 0.00 0.00 45.62 3.41
96 97 1.344942 CGGTACAGACGCAAGCACTC 61.345 60.000 0.00 0.00 45.62 3.51
97 98 1.372997 CGGTACAGACGCAAGCACT 60.373 57.895 0.00 0.00 45.62 4.40
98 99 1.663702 ACGGTACAGACGCAAGCAC 60.664 57.895 0.00 0.00 45.62 4.40
99 100 1.663388 CACGGTACAGACGCAAGCA 60.663 57.895 0.00 0.00 45.62 3.91
100 101 1.219522 AACACGGTACAGACGCAAGC 61.220 55.000 0.00 0.00 45.62 4.01
102 103 2.505628 TTAACACGGTACAGACGCAA 57.494 45.000 0.00 0.00 34.00 4.85
103 104 2.505628 TTTAACACGGTACAGACGCA 57.494 45.000 0.00 0.00 34.00 5.24
104 105 3.857923 TTTTTAACACGGTACAGACGC 57.142 42.857 0.00 0.00 34.00 5.19
248 249 4.143194 ACGACATATACGTCTCGATTGG 57.857 45.455 0.00 0.00 39.87 3.16
394 403 7.816031 CAGAGCAAAATAAATGAATCCACACTT 59.184 33.333 0.00 0.00 0.00 3.16
407 416 5.709631 TGGACTACATGCAGAGCAAAATAAA 59.290 36.000 0.00 0.00 43.62 1.40
458 467 9.374838 GAAACATATACTTCCTCCGTTCTTAAA 57.625 33.333 0.00 0.00 0.00 1.52
462 471 6.793505 AGAAACATATACTTCCTCCGTTCT 57.206 37.500 0.00 0.00 0.00 3.01
467 476 9.110502 CCTACAAAAGAAACATATACTTCCTCC 57.889 37.037 0.00 0.00 0.00 4.30
515 524 4.158949 TCTTTGATCCAAATCACTGCCATG 59.841 41.667 0.00 0.00 41.62 3.66
540 549 5.295431 TCAATAAGAATTTGGTGTCGCAG 57.705 39.130 0.00 0.00 0.00 5.18
617 628 9.435688 GCAGGAGTATTTGTTTGGATAAAAATT 57.564 29.630 0.00 0.00 0.00 1.82
627 638 6.279882 TGAAAAAGGCAGGAGTATTTGTTTG 58.720 36.000 0.00 0.00 0.00 2.93
727 741 3.838317 TCCGAGATCCTTTTCCAGAGAAA 59.162 43.478 0.00 0.00 40.26 2.52
728 742 3.195825 GTCCGAGATCCTTTTCCAGAGAA 59.804 47.826 0.00 0.00 0.00 2.87
729 743 2.761208 GTCCGAGATCCTTTTCCAGAGA 59.239 50.000 0.00 0.00 0.00 3.10
730 744 2.159028 GGTCCGAGATCCTTTTCCAGAG 60.159 54.545 0.00 0.00 0.00 3.35
731 745 1.831736 GGTCCGAGATCCTTTTCCAGA 59.168 52.381 0.00 0.00 0.00 3.86
732 746 1.834263 AGGTCCGAGATCCTTTTCCAG 59.166 52.381 0.00 0.00 0.00 3.86
733 747 1.952621 AGGTCCGAGATCCTTTTCCA 58.047 50.000 0.00 0.00 0.00 3.53
747 761 1.597461 CCGGGTCAGAGAAAGGTCC 59.403 63.158 0.00 0.00 0.00 4.46
752 766 3.702048 CGCCCCGGGTCAGAGAAA 61.702 66.667 21.85 0.00 0.00 2.52
769 783 8.411683 ACTTTCAGATATTGCTTTTCATGGATC 58.588 33.333 0.00 0.00 0.00 3.36
772 786 6.255020 GCACTTTCAGATATTGCTTTTCATGG 59.745 38.462 0.00 0.00 0.00 3.66
781 796 4.666237 GTTCTGGCACTTTCAGATATTGC 58.334 43.478 0.00 0.00 40.46 3.56
785 800 2.289382 TGCGTTCTGGCACTTTCAGATA 60.289 45.455 0.00 0.00 40.46 1.98
789 804 1.098869 TTTGCGTTCTGGCACTTTCA 58.901 45.000 0.00 0.00 43.82 2.69
791 806 2.267426 GTTTTTGCGTTCTGGCACTTT 58.733 42.857 0.00 0.00 43.82 2.66
792 807 1.203523 TGTTTTTGCGTTCTGGCACTT 59.796 42.857 0.00 0.00 43.82 3.16
802 817 5.751509 GGTTCCTTCTATTTTGTTTTTGCGT 59.248 36.000 0.00 0.00 0.00 5.24
807 822 5.595133 TCGTGGGTTCCTTCTATTTTGTTTT 59.405 36.000 0.00 0.00 0.00 2.43
808 823 5.134661 TCGTGGGTTCCTTCTATTTTGTTT 58.865 37.500 0.00 0.00 0.00 2.83
809 824 4.721132 TCGTGGGTTCCTTCTATTTTGTT 58.279 39.130 0.00 0.00 0.00 2.83
810 825 4.324267 CTCGTGGGTTCCTTCTATTTTGT 58.676 43.478 0.00 0.00 0.00 2.83
811 826 3.689649 CCTCGTGGGTTCCTTCTATTTTG 59.310 47.826 0.00 0.00 0.00 2.44
812 827 3.872630 GCCTCGTGGGTTCCTTCTATTTT 60.873 47.826 5.54 0.00 37.43 1.82
813 828 2.355818 GCCTCGTGGGTTCCTTCTATTT 60.356 50.000 5.54 0.00 37.43 1.40
814 829 1.209747 GCCTCGTGGGTTCCTTCTATT 59.790 52.381 5.54 0.00 37.43 1.73
815 830 0.831307 GCCTCGTGGGTTCCTTCTAT 59.169 55.000 5.54 0.00 37.43 1.98
816 831 1.262640 GGCCTCGTGGGTTCCTTCTA 61.263 60.000 5.54 0.00 37.43 2.10
817 832 2.593956 GGCCTCGTGGGTTCCTTCT 61.594 63.158 5.54 0.00 37.43 2.85
818 833 2.046217 GGCCTCGTGGGTTCCTTC 60.046 66.667 5.54 0.00 37.43 3.46
819 834 2.852075 TGGCCTCGTGGGTTCCTT 60.852 61.111 3.32 0.00 37.43 3.36
820 835 3.637273 GTGGCCTCGTGGGTTCCT 61.637 66.667 3.32 0.00 37.43 3.36
822 837 3.934391 CTCGTGGCCTCGTGGGTTC 62.934 68.421 25.10 0.00 37.43 3.62
823 838 4.003788 CTCGTGGCCTCGTGGGTT 62.004 66.667 25.10 0.00 37.43 4.11
837 852 3.818121 TTTGTGGTCGTGGGGCTCG 62.818 63.158 0.00 0.00 0.00 5.03
838 853 1.104577 TTTTTGTGGTCGTGGGGCTC 61.105 55.000 0.00 0.00 0.00 4.70
839 854 1.076632 TTTTTGTGGTCGTGGGGCT 60.077 52.632 0.00 0.00 0.00 5.19
840 855 1.066752 GTTTTTGTGGTCGTGGGGC 59.933 57.895 0.00 0.00 0.00 5.80
841 856 1.096386 TCGTTTTTGTGGTCGTGGGG 61.096 55.000 0.00 0.00 0.00 4.96
842 857 0.948678 ATCGTTTTTGTGGTCGTGGG 59.051 50.000 0.00 0.00 0.00 4.61
843 858 1.600013 TGATCGTTTTTGTGGTCGTGG 59.400 47.619 0.00 0.00 0.00 4.94
844 859 3.186409 AGATGATCGTTTTTGTGGTCGTG 59.814 43.478 0.00 0.00 0.00 4.35
845 860 3.399330 AGATGATCGTTTTTGTGGTCGT 58.601 40.909 0.00 0.00 0.00 4.34
846 861 3.181520 GGAGATGATCGTTTTTGTGGTCG 60.182 47.826 0.00 0.00 0.00 4.79
847 862 4.003648 AGGAGATGATCGTTTTTGTGGTC 58.996 43.478 0.00 0.00 0.00 4.02
848 863 4.003648 GAGGAGATGATCGTTTTTGTGGT 58.996 43.478 0.00 0.00 0.00 4.16
849 864 3.375299 GGAGGAGATGATCGTTTTTGTGG 59.625 47.826 0.00 0.00 0.00 4.17
850 865 4.256920 AGGAGGAGATGATCGTTTTTGTG 58.743 43.478 0.00 0.00 0.00 3.33
851 866 4.508662 GAGGAGGAGATGATCGTTTTTGT 58.491 43.478 0.00 0.00 0.00 2.83
852 867 3.873952 GGAGGAGGAGATGATCGTTTTTG 59.126 47.826 0.00 0.00 0.00 2.44
853 868 3.118223 GGGAGGAGGAGATGATCGTTTTT 60.118 47.826 0.00 0.00 0.00 1.94
854 869 2.436173 GGGAGGAGGAGATGATCGTTTT 59.564 50.000 0.00 0.00 0.00 2.43
855 870 2.043227 GGGAGGAGGAGATGATCGTTT 58.957 52.381 0.00 0.00 0.00 3.60
856 871 1.219213 AGGGAGGAGGAGATGATCGTT 59.781 52.381 0.00 0.00 0.00 3.85
857 872 0.856982 AGGGAGGAGGAGATGATCGT 59.143 55.000 0.00 0.00 0.00 3.73
858 873 1.544724 GAGGGAGGAGGAGATGATCG 58.455 60.000 0.00 0.00 0.00 3.69
859 874 1.552254 GGGAGGGAGGAGGAGATGATC 60.552 61.905 0.00 0.00 0.00 2.92
860 875 0.491371 GGGAGGGAGGAGGAGATGAT 59.509 60.000 0.00 0.00 0.00 2.45
861 876 0.631998 AGGGAGGGAGGAGGAGATGA 60.632 60.000 0.00 0.00 0.00 2.92
862 877 0.178935 GAGGGAGGGAGGAGGAGATG 60.179 65.000 0.00 0.00 0.00 2.90
863 878 1.376249 GGAGGGAGGGAGGAGGAGAT 61.376 65.000 0.00 0.00 0.00 2.75
864 879 2.015726 GGAGGGAGGGAGGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
865 880 2.612251 GGAGGGAGGGAGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
866 881 3.430497 CGGAGGGAGGGAGGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
868 883 3.687828 AAGCGGAGGGAGGGAGGAG 62.688 68.421 0.00 0.00 0.00 3.69
869 884 3.680920 GAAGCGGAGGGAGGGAGGA 62.681 68.421 0.00 0.00 0.00 3.71
870 885 3.157949 GAAGCGGAGGGAGGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
871 886 3.532155 CGAAGCGGAGGGAGGGAG 61.532 72.222 0.00 0.00 0.00 4.30
888 903 9.346725 GTTATGGCTATATGAAAAGCAAATAGC 57.653 33.333 4.45 4.45 46.19 2.97
891 906 8.292448 CGAGTTATGGCTATATGAAAAGCAAAT 58.708 33.333 0.00 0.00 40.61 2.32
892 907 7.255104 CCGAGTTATGGCTATATGAAAAGCAAA 60.255 37.037 0.00 0.00 40.61 3.68
893 908 6.204688 CCGAGTTATGGCTATATGAAAAGCAA 59.795 38.462 0.00 0.00 40.61 3.91
894 909 5.700832 CCGAGTTATGGCTATATGAAAAGCA 59.299 40.000 0.00 0.00 40.61 3.91
895 910 6.170675 CCGAGTTATGGCTATATGAAAAGC 57.829 41.667 0.00 0.00 38.03 3.51
908 923 1.051812 ATGGAGGAGCCGAGTTATGG 58.948 55.000 0.00 0.00 40.66 2.74
909 924 2.487934 CAATGGAGGAGCCGAGTTATG 58.512 52.381 0.00 0.00 40.66 1.90
910 925 1.202698 GCAATGGAGGAGCCGAGTTAT 60.203 52.381 0.00 0.00 40.66 1.89
911 926 0.178068 GCAATGGAGGAGCCGAGTTA 59.822 55.000 0.00 0.00 40.66 2.24
912 927 1.078143 GCAATGGAGGAGCCGAGTT 60.078 57.895 0.00 0.00 40.66 3.01
913 928 1.965754 GAGCAATGGAGGAGCCGAGT 61.966 60.000 0.00 0.00 40.66 4.18
914 929 1.227497 GAGCAATGGAGGAGCCGAG 60.227 63.158 0.00 0.00 40.66 4.63
915 930 2.735772 GGAGCAATGGAGGAGCCGA 61.736 63.158 0.00 0.00 40.66 5.54
916 931 2.203126 GGAGCAATGGAGGAGCCG 60.203 66.667 0.00 0.00 40.66 5.52
917 932 0.033699 AAAGGAGCAATGGAGGAGCC 60.034 55.000 0.00 0.00 37.10 4.70
918 933 1.747924 GAAAAGGAGCAATGGAGGAGC 59.252 52.381 0.00 0.00 0.00 4.70
919 934 2.291153 TGGAAAAGGAGCAATGGAGGAG 60.291 50.000 0.00 0.00 0.00 3.69
920 935 1.710244 TGGAAAAGGAGCAATGGAGGA 59.290 47.619 0.00 0.00 0.00 3.71
921 936 2.097825 CTGGAAAAGGAGCAATGGAGG 58.902 52.381 0.00 0.00 0.00 4.30
922 937 1.475682 GCTGGAAAAGGAGCAATGGAG 59.524 52.381 0.00 0.00 35.15 3.86
923 938 1.549203 GCTGGAAAAGGAGCAATGGA 58.451 50.000 0.00 0.00 35.15 3.41
924 939 0.533951 GGCTGGAAAAGGAGCAATGG 59.466 55.000 0.00 0.00 36.90 3.16
925 940 1.475682 GAGGCTGGAAAAGGAGCAATG 59.524 52.381 0.00 0.00 36.90 2.82
926 941 1.618074 GGAGGCTGGAAAAGGAGCAAT 60.618 52.381 0.00 0.00 36.90 3.56
927 942 0.251341 GGAGGCTGGAAAAGGAGCAA 60.251 55.000 0.00 0.00 36.90 3.91
928 943 1.380302 GGAGGCTGGAAAAGGAGCA 59.620 57.895 0.00 0.00 36.90 4.26
929 944 1.379176 GGGAGGCTGGAAAAGGAGC 60.379 63.158 0.00 0.00 34.23 4.70
930 945 1.078143 CGGGAGGCTGGAAAAGGAG 60.078 63.158 0.00 0.00 0.00 3.69
931 946 3.077907 CGGGAGGCTGGAAAAGGA 58.922 61.111 0.00 0.00 0.00 3.36
932 947 2.751837 GCGGGAGGCTGGAAAAGG 60.752 66.667 0.00 0.00 39.11 3.11
995 1010 2.149578 GATTTCGAGAGGCCATGGATG 58.850 52.381 18.40 0.00 0.00 3.51
996 1011 1.770658 TGATTTCGAGAGGCCATGGAT 59.229 47.619 18.40 1.89 0.00 3.41
997 1012 1.203237 TGATTTCGAGAGGCCATGGA 58.797 50.000 18.40 0.00 0.00 3.41
998 1013 1.878088 CATGATTTCGAGAGGCCATGG 59.122 52.381 7.63 7.63 0.00 3.66
999 1014 1.878088 CCATGATTTCGAGAGGCCATG 59.122 52.381 5.01 0.00 33.28 3.66
1000 1015 1.816961 GCCATGATTTCGAGAGGCCAT 60.817 52.381 5.01 0.00 36.17 4.40
1001 1016 0.464373 GCCATGATTTCGAGAGGCCA 60.464 55.000 5.01 0.00 36.17 5.36
1002 1017 2.325218 GCCATGATTTCGAGAGGCC 58.675 57.895 0.00 0.00 36.17 5.19
1003 1018 1.169034 GGGCCATGATTTCGAGAGGC 61.169 60.000 4.39 0.00 41.29 4.70
1004 1019 0.471617 AGGGCCATGATTTCGAGAGG 59.528 55.000 6.18 0.00 0.00 3.69
1005 1020 2.548920 GGTAGGGCCATGATTTCGAGAG 60.549 54.545 6.18 0.00 37.17 3.20
1006 1021 1.416401 GGTAGGGCCATGATTTCGAGA 59.584 52.381 6.18 0.00 37.17 4.04
1007 1022 1.543429 GGGTAGGGCCATGATTTCGAG 60.543 57.143 6.18 0.00 39.65 4.04
1008 1023 0.472471 GGGTAGGGCCATGATTTCGA 59.528 55.000 6.18 0.00 39.65 3.71
1009 1024 0.537371 GGGGTAGGGCCATGATTTCG 60.537 60.000 6.18 0.00 39.65 3.46
1010 1025 0.178961 GGGGGTAGGGCCATGATTTC 60.179 60.000 6.18 0.00 39.65 2.17
1011 1026 1.938327 GGGGGTAGGGCCATGATTT 59.062 57.895 6.18 0.00 39.65 2.17
1012 1027 2.460853 CGGGGGTAGGGCCATGATT 61.461 63.158 6.18 0.00 39.65 2.57
1013 1028 2.854032 CGGGGGTAGGGCCATGAT 60.854 66.667 6.18 0.00 39.65 2.45
1521 1615 3.976758 CTGCTGCTGCTGCTAACA 58.023 55.556 27.67 10.41 40.48 2.41
1648 1743 2.177531 GCAGCTTCGGCATGTGTG 59.822 61.111 0.00 0.00 44.74 3.82
1669 1764 2.026734 CGATCGCGTCAGCCATCT 59.973 61.111 5.77 0.00 38.58 2.90
1675 1770 1.371022 CATCTCCCGATCGCGTCAG 60.371 63.158 10.32 2.09 35.23 3.51
1752 1848 1.381327 TCGCCCCCACCAAACAAAA 60.381 52.632 0.00 0.00 0.00 2.44
1876 1972 5.457799 CCTACGGTGAACTGTGATATTAACG 59.542 44.000 5.15 0.00 36.70 3.18
1926 2023 3.810743 GCAAAAGCTAACCAGAGGGAGAA 60.811 47.826 0.00 0.00 38.05 2.87
1967 2064 4.022068 ACAAGGATGTAACCAGCAATGTTG 60.022 41.667 0.00 0.00 38.24 3.33
1968 2065 4.151883 ACAAGGATGTAACCAGCAATGTT 58.848 39.130 0.00 0.00 38.24 2.71
1987 2084 6.261435 TCTCTCTCTCCTTGGGTATTAACAA 58.739 40.000 0.00 0.00 0.00 2.83
1989 2086 5.221362 GCTCTCTCTCTCCTTGGGTATTAAC 60.221 48.000 0.00 0.00 0.00 2.01
1990 2087 4.896482 GCTCTCTCTCTCCTTGGGTATTAA 59.104 45.833 0.00 0.00 0.00 1.40
1991 2088 4.169068 AGCTCTCTCTCTCCTTGGGTATTA 59.831 45.833 0.00 0.00 0.00 0.98
1992 2089 3.052186 AGCTCTCTCTCTCCTTGGGTATT 60.052 47.826 0.00 0.00 0.00 1.89
1994 2091 1.926665 AGCTCTCTCTCTCCTTGGGTA 59.073 52.381 0.00 0.00 0.00 3.69
1996 2093 2.746279 TAGCTCTCTCTCTCCTTGGG 57.254 55.000 0.00 0.00 0.00 4.12
1997 2094 4.079253 GGTATAGCTCTCTCTCTCCTTGG 58.921 52.174 0.00 0.00 0.00 3.61
1998 2095 4.079253 GGGTATAGCTCTCTCTCTCCTTG 58.921 52.174 1.32 0.00 0.00 3.61
1999 2096 3.724738 TGGGTATAGCTCTCTCTCTCCTT 59.275 47.826 1.32 0.00 0.00 3.36
2001 2098 3.799432 TGGGTATAGCTCTCTCTCTCC 57.201 52.381 1.32 0.00 0.00 3.71
2002 2099 4.980573 TCTTGGGTATAGCTCTCTCTCTC 58.019 47.826 1.32 0.00 0.00 3.20
2005 2111 7.097623 TCTATTCTTGGGTATAGCTCTCTCT 57.902 40.000 1.32 0.00 0.00 3.10
2006 2112 7.668052 TCTTCTATTCTTGGGTATAGCTCTCTC 59.332 40.741 1.32 0.00 0.00 3.20
2013 2119 7.841282 TGTCCTCTTCTATTCTTGGGTATAG 57.159 40.000 0.00 0.00 0.00 1.31
2014 2120 8.798975 ATTGTCCTCTTCTATTCTTGGGTATA 57.201 34.615 0.00 0.00 0.00 1.47
2015 2121 7.698163 ATTGTCCTCTTCTATTCTTGGGTAT 57.302 36.000 0.00 0.00 0.00 2.73
2156 2263 7.095649 GCATGGACATCATCATCATTTGAATTG 60.096 37.037 0.00 0.00 38.03 2.32
2229 2337 3.636300 AGCAATTGCCAGTTGTGTAAAGA 59.364 39.130 26.45 0.00 43.38 2.52
2317 2425 1.704641 AGGTTTGAAGCAAGGTTCCC 58.295 50.000 9.26 4.09 0.00 3.97
2340 2449 8.987890 GCCAGTTAGCTTTTCATTTTATTTCAA 58.012 29.630 0.00 0.00 0.00 2.69
2374 2483 6.406370 AGCAGTAGAGCACATTGTACAAATA 58.594 36.000 13.23 0.00 36.85 1.40
2463 2572 8.874744 AAATATCAGGCAGTATTCAATAGCAT 57.125 30.769 0.00 0.00 0.00 3.79
2473 2582 5.711976 GTGGCCAATAAATATCAGGCAGTAT 59.288 40.000 7.24 0.00 46.96 2.12
2479 2588 4.389374 ACGAGTGGCCAATAAATATCAGG 58.611 43.478 7.24 0.00 0.00 3.86
2489 2598 2.038557 AGAGTACAAACGAGTGGCCAAT 59.961 45.455 7.24 5.98 0.00 3.16
2701 2810 4.095632 GCTTCAAGAGGAGAATGTAAAGGC 59.904 45.833 0.00 0.00 0.00 4.35
2872 2981 1.702401 TGCAGAACAACTATGGGGTCA 59.298 47.619 0.00 0.00 0.00 4.02
3229 3338 3.513515 ACAGGGAACAGCACAAAAAGAAA 59.486 39.130 0.00 0.00 0.00 2.52
3698 3815 5.923733 AGAATAGAGACAGTGTTGTAGGG 57.076 43.478 0.00 0.00 37.76 3.53
3736 3855 4.401202 GGACTCCAGAAAACAAGGTCAAAA 59.599 41.667 0.00 0.00 0.00 2.44
3817 3937 7.234782 TCAAATTCCTACTTCCTACTCAAGTGA 59.765 37.037 0.00 0.00 35.63 3.41
4091 4211 8.993121 TCACAGAGAAGAAAAATGTCTCATTAC 58.007 33.333 3.01 0.00 40.26 1.89
4263 4384 3.646162 ACACCATACACCTGAGAACAGAA 59.354 43.478 0.00 0.00 46.03 3.02
4270 4391 3.262420 GTGCTTACACCATACACCTGAG 58.738 50.000 0.00 0.00 41.21 3.35
4419 4540 4.333913 TTGCATCCTTTAAGCAAGCAAA 57.666 36.364 11.57 0.00 42.71 3.68
4450 4571 7.982354 GGCATGTCTACTTATAAACAGAGAACT 59.018 37.037 0.00 0.00 0.00 3.01
4473 4594 6.459573 GCGGAATGACAGAAAAATAATAGGCA 60.460 38.462 0.00 0.00 0.00 4.75
4483 4604 3.745975 CACTACTGCGGAATGACAGAAAA 59.254 43.478 0.00 0.00 37.35 2.29
4647 4770 8.634475 AGTAACTTTTCTGTCAATTTTGCTTC 57.366 30.769 0.00 0.00 0.00 3.86
4650 4773 8.406172 TCAAGTAACTTTTCTGTCAATTTTGC 57.594 30.769 0.00 0.00 0.00 3.68
4667 4790 8.721478 TCAGCAAAGATGATAGTTTCAAGTAAC 58.279 33.333 0.00 0.00 38.03 2.50
4671 4794 7.814642 AGTTCAGCAAAGATGATAGTTTCAAG 58.185 34.615 0.00 0.00 38.03 3.02
4768 4892 1.594331 AAGACTGCGTTTCAAGTCCC 58.406 50.000 0.00 0.00 32.18 4.46
4769 4893 4.246458 AGATAAGACTGCGTTTCAAGTCC 58.754 43.478 0.00 0.00 32.18 3.85
4865 5041 3.195825 AGGAACTGTGTACATCAGGTAGC 59.804 47.826 21.58 10.15 37.18 3.58
5170 5367 1.340017 GCCACAAAGTCATCCCTGCTA 60.340 52.381 0.00 0.00 0.00 3.49
5227 5424 4.776322 CCGTTGATCCGGCCAGCA 62.776 66.667 2.24 0.00 41.78 4.41
5378 5608 2.224744 TGGTTAGCCAGTTTGAGATGCA 60.225 45.455 0.00 0.00 40.46 3.96
5436 5666 5.817784 ACACTACTATCTACGCATATCCCT 58.182 41.667 0.00 0.00 0.00 4.20
5445 5675 4.103357 GTGCCACAACACTACTATCTACG 58.897 47.826 0.00 0.00 37.58 3.51
5454 5686 2.647683 TCCATTGTGCCACAACACTA 57.352 45.000 13.33 0.00 41.40 2.74
5552 5792 0.468226 ACGTGCAAGGGAAAGTCAGA 59.532 50.000 4.26 0.00 0.00 3.27
5556 5796 5.497474 AGATATAAACGTGCAAGGGAAAGT 58.503 37.500 4.26 0.00 0.00 2.66
5577 5817 6.750501 GTGTTATGATCGTGCAGTACTAAAGA 59.249 38.462 0.00 0.00 0.00 2.52
5580 5820 6.203808 AGTGTTATGATCGTGCAGTACTAA 57.796 37.500 0.00 0.00 0.00 2.24
5581 5821 5.830000 AGTGTTATGATCGTGCAGTACTA 57.170 39.130 0.00 0.00 0.00 1.82
5619 5859 3.331150 ACGTGTGACTTGTTTTCTCACA 58.669 40.909 0.00 0.00 41.54 3.58
5625 5865 3.687212 TGTGATGACGTGTGACTTGTTTT 59.313 39.130 0.00 0.00 0.00 2.43
5635 5875 0.518636 GCTGCAATGTGATGACGTGT 59.481 50.000 0.00 0.00 0.00 4.49
5640 5880 1.199789 GGAAACGCTGCAATGTGATGA 59.800 47.619 0.00 0.00 0.00 2.92
5646 5886 1.689959 GTCTTGGAAACGCTGCAATG 58.310 50.000 0.00 0.00 34.49 2.82
5647 5887 0.238289 CGTCTTGGAAACGCTGCAAT 59.762 50.000 0.00 0.00 34.49 3.56
5648 5888 0.812014 TCGTCTTGGAAACGCTGCAA 60.812 50.000 0.00 0.00 39.90 4.08
5649 5889 0.602638 ATCGTCTTGGAAACGCTGCA 60.603 50.000 0.00 0.00 39.90 4.41
5653 5893 1.429463 ACTCATCGTCTTGGAAACGC 58.571 50.000 0.00 0.00 39.90 4.84
5654 5894 3.057019 TCAACTCATCGTCTTGGAAACG 58.943 45.455 0.00 0.00 41.39 3.60
5655 5895 4.058817 ACTCAACTCATCGTCTTGGAAAC 58.941 43.478 0.00 0.00 0.00 2.78
5656 5896 4.336889 ACTCAACTCATCGTCTTGGAAA 57.663 40.909 0.00 0.00 0.00 3.13
5658 5898 4.336889 AAACTCAACTCATCGTCTTGGA 57.663 40.909 0.00 0.00 0.00 3.53
5659 5899 5.230942 AGTAAACTCAACTCATCGTCTTGG 58.769 41.667 0.00 0.00 0.00 3.61
5660 5900 6.382821 GAGTAAACTCAACTCATCGTCTTG 57.617 41.667 5.24 0.00 42.43 3.02
5678 5930 2.522185 ACCGTCTTGCCTACTGAGTAA 58.478 47.619 0.00 0.00 0.00 2.24
5702 5954 3.469008 AACTCAACTCATCGTCCACAA 57.531 42.857 0.00 0.00 0.00 3.33
5704 5956 3.390135 TCAAACTCAACTCATCGTCCAC 58.610 45.455 0.00 0.00 0.00 4.02
5741 5993 0.512952 GTGCTGTCGATGTGTTGACC 59.487 55.000 0.00 0.00 37.87 4.02
5807 6059 6.113411 TCTCTTCGTTTCTCCTTTGTTTTCT 58.887 36.000 0.00 0.00 0.00 2.52
5824 6076 5.841296 CGTTTCTTGTTTTTAGCTCTCTTCG 59.159 40.000 0.00 0.00 0.00 3.79
5851 6103 3.456380 TTTTTAGCCAGCCTCCTTGAT 57.544 42.857 0.00 0.00 0.00 2.57
5913 6176 9.325198 CAAGAAGCACCATACATATACTGTAAA 57.675 33.333 0.00 0.00 43.42 2.01
6056 6319 5.066505 ACTTGTCTGAATCACTTGTGGTTTC 59.933 40.000 0.54 5.78 0.00 2.78
6068 6331 6.348868 GGTTCATCCTTTCACTTGTCTGAATC 60.349 42.308 0.00 0.00 30.19 2.52
6086 6351 1.953559 TCTTATGCAGCCGGTTCATC 58.046 50.000 1.90 0.00 0.00 2.92
6131 6526 4.080299 CCTATCTTTGTCCTGGCCTACTTT 60.080 45.833 3.32 0.00 0.00 2.66
6157 6552 1.875488 ATCGCTTAGTAACCAGGGGT 58.125 50.000 0.00 0.00 37.65 4.95
6158 6553 2.093128 ACAATCGCTTAGTAACCAGGGG 60.093 50.000 0.00 0.00 0.00 4.79
6159 6554 2.936498 CACAATCGCTTAGTAACCAGGG 59.064 50.000 0.00 0.00 0.00 4.45
6210 6618 6.350445 GCACTGAAATTTATCATTCCTGGTGT 60.350 38.462 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.