Multiple sequence alignment - TraesCS7A01G405400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G405400 chr7A 100.000 3767 0 0 1 3767 589133267 589137033 0.000000e+00 6957
1 TraesCS7A01G405400 chr7A 98.049 615 10 2 2896 3508 48023667 48024281 0.000000e+00 1068
2 TraesCS7A01G405400 chr7A 97.720 614 12 2 2897 3508 116131372 116130759 0.000000e+00 1055
3 TraesCS7A01G405400 chr7A 97.557 614 13 2 2897 3508 716397418 716396805 0.000000e+00 1050
4 TraesCS7A01G405400 chr7A 99.194 372 3 0 1 372 448444971 448445342 0.000000e+00 671
5 TraesCS7A01G405400 chr7D 89.978 2255 83 60 366 2568 515468716 515470879 0.000000e+00 2780
6 TraesCS7A01G405400 chr7D 91.667 264 13 6 3505 3763 515471125 515471384 1.290000e-94 357
7 TraesCS7A01G405400 chr7D 91.165 249 12 3 2655 2900 515470873 515471114 2.810000e-86 329
8 TraesCS7A01G405400 chr7B 88.220 2275 148 66 682 2896 546016148 546018362 0.000000e+00 2606
9 TraesCS7A01G405400 chr7B 96.591 264 6 2 3506 3767 546018369 546018631 5.780000e-118 435
10 TraesCS7A01G405400 chr7B 92.920 113 4 3 503 614 546016016 546016125 1.080000e-35 161
11 TraesCS7A01G405400 chr5A 98.691 611 6 2 2900 3508 648788933 648788323 0.000000e+00 1083
12 TraesCS7A01G405400 chr5A 99.196 373 3 0 1 373 174069220 174068848 0.000000e+00 673
13 TraesCS7A01G405400 chr1A 98.363 611 8 2 2900 3508 558172826 558173436 0.000000e+00 1072
14 TraesCS7A01G405400 chr1B 98.355 608 8 2 2903 3508 258837464 258836857 0.000000e+00 1066
15 TraesCS7A01G405400 chr2A 95.050 606 27 3 2905 3508 591176949 591177553 0.000000e+00 950
16 TraesCS7A01G405400 chr2A 99.194 372 3 0 1 372 568998038 568997667 0.000000e+00 671
17 TraesCS7A01G405400 chr2D 94.092 457 21 4 3057 3508 28923344 28923799 0.000000e+00 689
18 TraesCS7A01G405400 chr6B 98.947 380 4 0 1 380 82549205 82549584 0.000000e+00 680
19 TraesCS7A01G405400 chr3B 86.495 622 68 7 2897 3507 346618089 346618705 0.000000e+00 669
20 TraesCS7A01G405400 chr3B 98.670 376 5 0 1 376 459097521 459097896 0.000000e+00 667
21 TraesCS7A01G405400 chr4A 98.172 383 6 1 1 382 90076880 90077262 0.000000e+00 667
22 TraesCS7A01G405400 chr4A 97.917 384 7 1 1 384 90785537 90785919 0.000000e+00 664
23 TraesCS7A01G405400 chr6A 98.928 373 3 1 1 372 180192575 180192947 0.000000e+00 665
24 TraesCS7A01G405400 chr3A 97.922 385 7 1 1 385 742247673 742248056 0.000000e+00 665


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G405400 chr7A 589133267 589137033 3766 False 6957.000000 6957 100.000000 1 3767 1 chr7A.!!$F3 3766
1 TraesCS7A01G405400 chr7A 48023667 48024281 614 False 1068.000000 1068 98.049000 2896 3508 1 chr7A.!!$F1 612
2 TraesCS7A01G405400 chr7A 116130759 116131372 613 True 1055.000000 1055 97.720000 2897 3508 1 chr7A.!!$R1 611
3 TraesCS7A01G405400 chr7A 716396805 716397418 613 True 1050.000000 1050 97.557000 2897 3508 1 chr7A.!!$R2 611
4 TraesCS7A01G405400 chr7D 515468716 515471384 2668 False 1155.333333 2780 90.936667 366 3763 3 chr7D.!!$F1 3397
5 TraesCS7A01G405400 chr7B 546016016 546018631 2615 False 1067.333333 2606 92.577000 503 3767 3 chr7B.!!$F1 3264
6 TraesCS7A01G405400 chr5A 648788323 648788933 610 True 1083.000000 1083 98.691000 2900 3508 1 chr5A.!!$R2 608
7 TraesCS7A01G405400 chr1A 558172826 558173436 610 False 1072.000000 1072 98.363000 2900 3508 1 chr1A.!!$F1 608
8 TraesCS7A01G405400 chr1B 258836857 258837464 607 True 1066.000000 1066 98.355000 2903 3508 1 chr1B.!!$R1 605
9 TraesCS7A01G405400 chr2A 591176949 591177553 604 False 950.000000 950 95.050000 2905 3508 1 chr2A.!!$F1 603
10 TraesCS7A01G405400 chr3B 346618089 346618705 616 False 669.000000 669 86.495000 2897 3507 1 chr3B.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.032615 TGTGCTGGTTCCCCAAAACT 60.033 50.0 0.00 0.0 41.27 2.66 F
817 831 0.248565 ATCGCATCTCATCCCATCCG 59.751 55.0 0.00 0.0 0.00 4.18 F
1212 1280 0.341258 AGGAGATGGGGCTCTCTGAA 59.659 55.0 2.73 0.0 41.23 3.02 F
1880 1967 0.321653 ACAGGGACTTGACCGCAATC 60.322 55.0 0.00 0.0 34.60 2.67 F
2107 2200 0.460811 ACGCACATCATCACGCTGAT 60.461 50.0 0.00 0.0 37.65 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1192 1260 0.398239 TCAGAGAGCCCCATCTCCTG 60.398 60.000 0.24 0.0 45.77 3.86 R
1880 1967 0.516877 TTCTTGACCAAAGCGATGCG 59.483 50.000 0.00 0.0 35.69 4.73 R
2642 2747 0.588252 CACCTTGTCAAACCAGAGCG 59.412 55.000 0.00 0.0 0.00 5.03 R
2724 2832 1.153429 GGGATCGTAGGCCACACAC 60.153 63.158 5.01 0.0 0.00 3.82 R
3641 3761 2.158900 CGCCTCTGTAACTGGATGGATT 60.159 50.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.520290 TCGGTGCTACATACCTTTCTG 57.480 47.619 0.00 0.00 36.03 3.02
22 23 1.933853 CGGTGCTACATACCTTTCTGC 59.066 52.381 0.00 0.00 36.03 4.26
23 24 2.676750 CGGTGCTACATACCTTTCTGCA 60.677 50.000 0.00 0.00 36.03 4.41
24 25 3.343617 GGTGCTACATACCTTTCTGCAA 58.656 45.455 0.00 0.00 35.30 4.08
25 26 3.756434 GGTGCTACATACCTTTCTGCAAA 59.244 43.478 0.00 0.00 35.30 3.68
26 27 4.399303 GGTGCTACATACCTTTCTGCAAAT 59.601 41.667 0.00 0.00 35.30 2.32
27 28 5.449177 GGTGCTACATACCTTTCTGCAAATC 60.449 44.000 0.00 0.00 35.30 2.17
28 29 4.640201 TGCTACATACCTTTCTGCAAATCC 59.360 41.667 0.00 0.00 0.00 3.01
29 30 4.640201 GCTACATACCTTTCTGCAAATCCA 59.360 41.667 0.00 0.00 0.00 3.41
30 31 5.220931 GCTACATACCTTTCTGCAAATCCAG 60.221 44.000 0.00 0.00 0.00 3.86
31 32 4.666512 ACATACCTTTCTGCAAATCCAGT 58.333 39.130 0.00 0.00 34.47 4.00
32 33 5.815581 ACATACCTTTCTGCAAATCCAGTA 58.184 37.500 0.00 0.00 34.47 2.74
33 34 6.426587 ACATACCTTTCTGCAAATCCAGTAT 58.573 36.000 0.00 0.00 34.47 2.12
34 35 6.891908 ACATACCTTTCTGCAAATCCAGTATT 59.108 34.615 0.00 0.00 34.47 1.89
35 36 7.397192 ACATACCTTTCTGCAAATCCAGTATTT 59.603 33.333 0.00 0.00 38.36 1.40
36 37 6.272822 ACCTTTCTGCAAATCCAGTATTTC 57.727 37.500 0.00 0.00 35.54 2.17
37 38 5.774690 ACCTTTCTGCAAATCCAGTATTTCA 59.225 36.000 0.00 0.00 35.54 2.69
38 39 6.438425 ACCTTTCTGCAAATCCAGTATTTCAT 59.562 34.615 0.00 0.00 35.54 2.57
39 40 6.755141 CCTTTCTGCAAATCCAGTATTTCATG 59.245 38.462 0.00 0.00 35.54 3.07
40 41 5.252969 TCTGCAAATCCAGTATTTCATGC 57.747 39.130 0.00 0.00 35.54 4.06
41 42 4.098349 TCTGCAAATCCAGTATTTCATGCC 59.902 41.667 0.00 0.00 35.54 4.40
42 43 3.132646 TGCAAATCCAGTATTTCATGCCC 59.867 43.478 0.00 0.00 35.54 5.36
43 44 3.796504 GCAAATCCAGTATTTCATGCCCG 60.797 47.826 0.00 0.00 35.54 6.13
44 45 3.576078 AATCCAGTATTTCATGCCCGA 57.424 42.857 0.00 0.00 0.00 5.14
45 46 3.576078 ATCCAGTATTTCATGCCCGAA 57.424 42.857 0.00 0.00 0.00 4.30
46 47 3.576078 TCCAGTATTTCATGCCCGAAT 57.424 42.857 0.00 0.00 0.00 3.34
47 48 3.213506 TCCAGTATTTCATGCCCGAATG 58.786 45.455 0.00 0.00 0.00 2.67
48 49 3.118075 TCCAGTATTTCATGCCCGAATGA 60.118 43.478 0.00 0.00 34.75 2.57
49 50 3.631686 CCAGTATTTCATGCCCGAATGAA 59.368 43.478 0.00 0.00 43.20 2.57
53 54 3.296322 TTTCATGCCCGAATGAAACAC 57.704 42.857 6.73 0.00 46.51 3.32
54 55 1.902938 TCATGCCCGAATGAAACACA 58.097 45.000 0.00 0.00 33.63 3.72
55 56 2.445427 TCATGCCCGAATGAAACACAT 58.555 42.857 0.00 0.00 41.45 3.21
56 57 4.262377 TTTCATGCCCGAATGAAACACATT 60.262 37.500 6.73 0.00 46.51 2.71
57 58 6.304862 TTTCATGCCCGAATGAAACACATTG 61.305 40.000 6.73 0.00 46.51 2.82
58 59 8.404842 TTTCATGCCCGAATGAAACACATTGA 62.405 38.462 6.73 0.00 46.51 2.57
59 60 9.769680 TTTCATGCCCGAATGAAACACATTGAA 62.770 37.037 6.73 0.00 46.51 2.69
70 71 7.800155 TGAAACACATTGAAGTTGACTATCA 57.200 32.000 0.00 0.00 0.00 2.15
71 72 7.639039 TGAAACACATTGAAGTTGACTATCAC 58.361 34.615 0.00 0.00 0.00 3.06
72 73 7.498900 TGAAACACATTGAAGTTGACTATCACT 59.501 33.333 0.00 0.00 0.00 3.41
73 74 7.807977 AACACATTGAAGTTGACTATCACTT 57.192 32.000 0.00 0.00 0.00 3.16
74 75 7.807977 ACACATTGAAGTTGACTATCACTTT 57.192 32.000 0.00 0.00 0.00 2.66
75 76 7.642669 ACACATTGAAGTTGACTATCACTTTG 58.357 34.615 0.00 0.00 0.00 2.77
76 77 7.283127 ACACATTGAAGTTGACTATCACTTTGT 59.717 33.333 0.00 0.00 0.00 2.83
77 78 8.773645 CACATTGAAGTTGACTATCACTTTGTA 58.226 33.333 0.00 0.00 0.00 2.41
78 79 8.774586 ACATTGAAGTTGACTATCACTTTGTAC 58.225 33.333 0.00 0.00 0.00 2.90
79 80 7.402811 TTGAAGTTGACTATCACTTTGTACG 57.597 36.000 0.00 0.00 0.00 3.67
80 81 5.924254 TGAAGTTGACTATCACTTTGTACGG 59.076 40.000 0.00 0.00 0.00 4.02
81 82 4.817517 AGTTGACTATCACTTTGTACGGG 58.182 43.478 0.00 0.00 0.00 5.28
82 83 4.525487 AGTTGACTATCACTTTGTACGGGA 59.475 41.667 0.00 0.00 0.00 5.14
83 84 5.011329 AGTTGACTATCACTTTGTACGGGAA 59.989 40.000 0.00 0.00 0.00 3.97
84 85 4.813027 TGACTATCACTTTGTACGGGAAC 58.187 43.478 0.00 0.00 0.00 3.62
99 100 2.000447 GGGAACGTGTATCACAGAAGC 59.000 52.381 0.00 0.00 33.40 3.86
100 101 2.611971 GGGAACGTGTATCACAGAAGCA 60.612 50.000 0.00 0.00 33.40 3.91
101 102 3.064207 GGAACGTGTATCACAGAAGCAA 58.936 45.455 0.00 0.00 33.40 3.91
102 103 3.120649 GGAACGTGTATCACAGAAGCAAC 60.121 47.826 0.00 0.00 33.40 4.17
103 104 3.386768 ACGTGTATCACAGAAGCAACT 57.613 42.857 0.00 0.00 33.40 3.16
104 105 3.318017 ACGTGTATCACAGAAGCAACTC 58.682 45.455 0.00 0.00 33.40 3.01
105 106 2.668457 CGTGTATCACAGAAGCAACTCC 59.332 50.000 1.00 0.00 33.40 3.85
106 107 3.664107 GTGTATCACAGAAGCAACTCCA 58.336 45.455 0.00 0.00 34.08 3.86
107 108 3.681897 GTGTATCACAGAAGCAACTCCAG 59.318 47.826 0.00 0.00 34.08 3.86
108 109 3.578282 TGTATCACAGAAGCAACTCCAGA 59.422 43.478 0.00 0.00 0.00 3.86
109 110 3.996921 ATCACAGAAGCAACTCCAGAT 57.003 42.857 0.00 0.00 0.00 2.90
110 111 3.325293 TCACAGAAGCAACTCCAGATC 57.675 47.619 0.00 0.00 0.00 2.75
111 112 2.634453 TCACAGAAGCAACTCCAGATCA 59.366 45.455 0.00 0.00 0.00 2.92
112 113 3.071457 TCACAGAAGCAACTCCAGATCAA 59.929 43.478 0.00 0.00 0.00 2.57
113 114 3.436015 CACAGAAGCAACTCCAGATCAAG 59.564 47.826 0.00 0.00 0.00 3.02
114 115 3.072184 ACAGAAGCAACTCCAGATCAAGT 59.928 43.478 0.00 0.00 0.00 3.16
115 116 4.070716 CAGAAGCAACTCCAGATCAAGTT 58.929 43.478 0.00 0.00 36.16 2.66
116 117 4.518211 CAGAAGCAACTCCAGATCAAGTTT 59.482 41.667 0.00 0.00 33.53 2.66
117 118 5.702670 CAGAAGCAACTCCAGATCAAGTTTA 59.297 40.000 0.00 0.00 33.53 2.01
118 119 6.373774 CAGAAGCAACTCCAGATCAAGTTTAT 59.626 38.462 0.00 0.00 33.53 1.40
119 120 6.597280 AGAAGCAACTCCAGATCAAGTTTATC 59.403 38.462 0.00 1.03 33.53 1.75
120 121 6.059787 AGCAACTCCAGATCAAGTTTATCT 57.940 37.500 0.00 0.00 33.53 1.98
121 122 6.112058 AGCAACTCCAGATCAAGTTTATCTC 58.888 40.000 0.00 0.00 33.53 2.75
122 123 5.877012 GCAACTCCAGATCAAGTTTATCTCA 59.123 40.000 0.00 0.00 33.53 3.27
123 124 6.541641 GCAACTCCAGATCAAGTTTATCTCAT 59.458 38.462 0.00 0.00 33.53 2.90
124 125 7.254727 GCAACTCCAGATCAAGTTTATCTCATC 60.255 40.741 0.00 0.00 33.53 2.92
125 126 7.673641 ACTCCAGATCAAGTTTATCTCATCT 57.326 36.000 0.00 0.00 31.22 2.90
126 127 8.774546 ACTCCAGATCAAGTTTATCTCATCTA 57.225 34.615 0.00 0.00 31.22 1.98
127 128 9.206690 ACTCCAGATCAAGTTTATCTCATCTAA 57.793 33.333 0.00 0.00 31.22 2.10
128 129 9.695526 CTCCAGATCAAGTTTATCTCATCTAAG 57.304 37.037 0.00 0.00 31.22 2.18
129 130 8.646004 TCCAGATCAAGTTTATCTCATCTAAGG 58.354 37.037 0.00 0.00 31.22 2.69
130 131 8.646004 CCAGATCAAGTTTATCTCATCTAAGGA 58.354 37.037 0.00 0.00 31.22 3.36
135 136 9.823647 TCAAGTTTATCTCATCTAAGGATCAAC 57.176 33.333 0.00 0.00 0.00 3.18
136 137 9.829507 CAAGTTTATCTCATCTAAGGATCAACT 57.170 33.333 0.00 0.00 36.26 3.16
138 139 9.829507 AGTTTATCTCATCTAAGGATCAACTTG 57.170 33.333 0.00 0.00 33.10 3.16
139 140 8.555361 GTTTATCTCATCTAAGGATCAACTTGC 58.445 37.037 0.00 0.00 32.02 4.01
140 141 5.682234 TCTCATCTAAGGATCAACTTGCA 57.318 39.130 0.00 0.00 32.02 4.08
141 142 5.668471 TCTCATCTAAGGATCAACTTGCAG 58.332 41.667 0.00 0.00 32.02 4.41
142 143 5.423290 TCTCATCTAAGGATCAACTTGCAGA 59.577 40.000 0.00 0.00 32.02 4.26
143 144 5.423015 TCATCTAAGGATCAACTTGCAGAC 58.577 41.667 0.00 0.00 32.02 3.51
144 145 4.890158 TCTAAGGATCAACTTGCAGACA 57.110 40.909 0.00 0.00 32.02 3.41
145 146 5.426689 TCTAAGGATCAACTTGCAGACAT 57.573 39.130 0.00 0.00 32.02 3.06
146 147 5.423015 TCTAAGGATCAACTTGCAGACATC 58.577 41.667 0.00 0.00 32.02 3.06
147 148 3.996921 AGGATCAACTTGCAGACATCT 57.003 42.857 0.00 0.00 0.00 2.90
148 149 4.298103 AGGATCAACTTGCAGACATCTT 57.702 40.909 0.00 0.00 0.00 2.40
149 150 4.260170 AGGATCAACTTGCAGACATCTTC 58.740 43.478 0.00 0.00 0.00 2.87
150 151 4.005650 GGATCAACTTGCAGACATCTTCA 58.994 43.478 0.00 0.00 0.00 3.02
151 152 4.142730 GGATCAACTTGCAGACATCTTCAC 60.143 45.833 0.00 0.00 0.00 3.18
152 153 4.077300 TCAACTTGCAGACATCTTCACT 57.923 40.909 0.00 0.00 0.00 3.41
153 154 5.213891 TCAACTTGCAGACATCTTCACTA 57.786 39.130 0.00 0.00 0.00 2.74
154 155 5.610398 TCAACTTGCAGACATCTTCACTAA 58.390 37.500 0.00 0.00 0.00 2.24
155 156 5.698089 TCAACTTGCAGACATCTTCACTAAG 59.302 40.000 0.00 0.00 0.00 2.18
156 157 3.999663 ACTTGCAGACATCTTCACTAAGC 59.000 43.478 0.00 0.00 32.36 3.09
157 158 2.977914 TGCAGACATCTTCACTAAGCC 58.022 47.619 0.00 0.00 32.36 4.35
158 159 2.568956 TGCAGACATCTTCACTAAGCCT 59.431 45.455 0.00 0.00 32.36 4.58
159 160 3.008375 TGCAGACATCTTCACTAAGCCTT 59.992 43.478 0.00 0.00 32.36 4.35
160 161 4.006319 GCAGACATCTTCACTAAGCCTTT 58.994 43.478 0.00 0.00 32.36 3.11
161 162 5.178797 GCAGACATCTTCACTAAGCCTTTA 58.821 41.667 0.00 0.00 32.36 1.85
162 163 5.064071 GCAGACATCTTCACTAAGCCTTTAC 59.936 44.000 0.00 0.00 32.36 2.01
163 164 5.582665 CAGACATCTTCACTAAGCCTTTACC 59.417 44.000 0.00 0.00 32.36 2.85
164 165 4.504858 ACATCTTCACTAAGCCTTTACCG 58.495 43.478 0.00 0.00 32.36 4.02
165 166 2.968675 TCTTCACTAAGCCTTTACCGC 58.031 47.619 0.00 0.00 32.36 5.68
166 167 2.565834 TCTTCACTAAGCCTTTACCGCT 59.434 45.455 0.00 0.00 38.53 5.52
167 168 2.380084 TCACTAAGCCTTTACCGCTG 57.620 50.000 0.00 0.00 36.47 5.18
168 169 0.727398 CACTAAGCCTTTACCGCTGC 59.273 55.000 0.00 0.00 36.47 5.25
169 170 0.392595 ACTAAGCCTTTACCGCTGCC 60.393 55.000 0.00 0.00 36.47 4.85
170 171 0.392461 CTAAGCCTTTACCGCTGCCA 60.392 55.000 0.00 0.00 36.47 4.92
171 172 0.254747 TAAGCCTTTACCGCTGCCAT 59.745 50.000 0.00 0.00 36.47 4.40
172 173 0.254747 AAGCCTTTACCGCTGCCATA 59.745 50.000 0.00 0.00 36.47 2.74
173 174 0.179045 AGCCTTTACCGCTGCCATAG 60.179 55.000 0.00 0.00 34.56 2.23
174 175 0.463833 GCCTTTACCGCTGCCATAGT 60.464 55.000 0.00 0.00 0.00 2.12
175 176 2.017113 GCCTTTACCGCTGCCATAGTT 61.017 52.381 0.00 0.00 0.00 2.24
176 177 2.365582 CCTTTACCGCTGCCATAGTTT 58.634 47.619 0.00 0.00 0.00 2.66
177 178 2.097466 CCTTTACCGCTGCCATAGTTTG 59.903 50.000 0.00 0.00 0.00 2.93
178 179 2.772077 TTACCGCTGCCATAGTTTGA 57.228 45.000 0.00 0.00 0.00 2.69
179 180 2.309528 TACCGCTGCCATAGTTTGAG 57.690 50.000 0.00 0.00 0.00 3.02
180 181 0.392998 ACCGCTGCCATAGTTTGAGG 60.393 55.000 0.00 0.00 0.00 3.86
188 189 2.945668 GCCATAGTTTGAGGCTTGTAGG 59.054 50.000 0.00 0.00 44.92 3.18
189 190 2.945668 CCATAGTTTGAGGCTTGTAGGC 59.054 50.000 0.00 0.00 41.73 3.93
190 191 2.380084 TAGTTTGAGGCTTGTAGGCG 57.620 50.000 0.00 0.00 46.58 5.52
191 192 0.955919 AGTTTGAGGCTTGTAGGCGC 60.956 55.000 0.00 0.00 46.58 6.53
193 194 2.747022 TGAGGCTTGTAGGCGCAA 59.253 55.556 10.83 0.00 46.44 4.85
194 195 1.299648 TGAGGCTTGTAGGCGCAAT 59.700 52.632 10.83 0.00 46.44 3.56
195 196 0.744414 TGAGGCTTGTAGGCGCAATC 60.744 55.000 10.83 0.00 46.44 2.67
196 197 0.462759 GAGGCTTGTAGGCGCAATCT 60.463 55.000 10.83 0.00 46.58 2.40
197 198 0.035056 AGGCTTGTAGGCGCAATCTT 60.035 50.000 10.83 0.00 46.58 2.40
198 199 1.209504 AGGCTTGTAGGCGCAATCTTA 59.790 47.619 10.83 0.00 46.58 2.10
199 200 1.330829 GGCTTGTAGGCGCAATCTTAC 59.669 52.381 10.83 4.10 0.00 2.34
200 201 1.330829 GCTTGTAGGCGCAATCTTACC 59.669 52.381 10.83 0.00 0.00 2.85
201 202 1.940613 CTTGTAGGCGCAATCTTACCC 59.059 52.381 10.83 0.00 0.00 3.69
202 203 1.200519 TGTAGGCGCAATCTTACCCT 58.799 50.000 10.83 0.00 0.00 4.34
203 204 1.557832 TGTAGGCGCAATCTTACCCTT 59.442 47.619 10.83 0.00 0.00 3.95
204 205 2.210961 GTAGGCGCAATCTTACCCTTC 58.789 52.381 10.83 0.00 0.00 3.46
205 206 0.912486 AGGCGCAATCTTACCCTTCT 59.088 50.000 10.83 0.00 0.00 2.85
206 207 1.134371 AGGCGCAATCTTACCCTTCTC 60.134 52.381 10.83 0.00 0.00 2.87
207 208 0.931005 GCGCAATCTTACCCTTCTCG 59.069 55.000 0.30 0.00 0.00 4.04
208 209 1.571919 CGCAATCTTACCCTTCTCGG 58.428 55.000 0.00 0.00 0.00 4.63
209 210 1.134788 CGCAATCTTACCCTTCTCGGT 60.135 52.381 0.00 0.00 40.13 4.69
210 211 2.677037 CGCAATCTTACCCTTCTCGGTT 60.677 50.000 0.00 0.00 37.34 4.44
211 212 2.937149 GCAATCTTACCCTTCTCGGTTC 59.063 50.000 0.00 0.00 37.34 3.62
212 213 3.369576 GCAATCTTACCCTTCTCGGTTCT 60.370 47.826 0.00 0.00 37.34 3.01
213 214 4.833390 CAATCTTACCCTTCTCGGTTCTT 58.167 43.478 0.00 0.00 37.34 2.52
214 215 5.246307 CAATCTTACCCTTCTCGGTTCTTT 58.754 41.667 0.00 0.00 37.34 2.52
215 216 6.403878 CAATCTTACCCTTCTCGGTTCTTTA 58.596 40.000 0.00 0.00 37.34 1.85
216 217 5.656213 TCTTACCCTTCTCGGTTCTTTAG 57.344 43.478 0.00 0.00 37.34 1.85
217 218 5.327732 TCTTACCCTTCTCGGTTCTTTAGA 58.672 41.667 0.00 0.00 37.34 2.10
218 219 5.776716 TCTTACCCTTCTCGGTTCTTTAGAA 59.223 40.000 0.00 0.00 37.34 2.10
219 220 4.968971 ACCCTTCTCGGTTCTTTAGAAA 57.031 40.909 0.00 0.00 35.58 2.52
220 221 4.895961 ACCCTTCTCGGTTCTTTAGAAAG 58.104 43.478 0.00 0.00 35.58 2.62
221 222 4.347292 ACCCTTCTCGGTTCTTTAGAAAGT 59.653 41.667 2.10 0.00 37.31 2.66
222 223 4.691216 CCCTTCTCGGTTCTTTAGAAAGTG 59.309 45.833 2.10 0.00 37.31 3.16
223 224 4.691216 CCTTCTCGGTTCTTTAGAAAGTGG 59.309 45.833 2.10 0.00 37.31 4.00
224 225 3.660865 TCTCGGTTCTTTAGAAAGTGGC 58.339 45.455 2.10 0.00 37.31 5.01
225 226 3.323979 TCTCGGTTCTTTAGAAAGTGGCT 59.676 43.478 2.10 0.00 37.31 4.75
226 227 4.525487 TCTCGGTTCTTTAGAAAGTGGCTA 59.475 41.667 2.10 0.00 37.31 3.93
227 228 5.011329 TCTCGGTTCTTTAGAAAGTGGCTAA 59.989 40.000 2.10 0.00 37.31 3.09
228 229 5.235516 TCGGTTCTTTAGAAAGTGGCTAAG 58.764 41.667 2.10 0.00 37.31 2.18
229 230 5.011329 TCGGTTCTTTAGAAAGTGGCTAAGA 59.989 40.000 2.10 0.00 37.31 2.10
230 231 5.875359 CGGTTCTTTAGAAAGTGGCTAAGAT 59.125 40.000 2.10 0.00 37.31 2.40
231 232 6.371825 CGGTTCTTTAGAAAGTGGCTAAGATT 59.628 38.462 2.10 0.00 37.31 2.40
232 233 7.530863 GGTTCTTTAGAAAGTGGCTAAGATTG 58.469 38.462 2.10 0.00 37.31 2.67
233 234 7.390718 GGTTCTTTAGAAAGTGGCTAAGATTGA 59.609 37.037 2.10 0.00 37.31 2.57
234 235 8.447053 GTTCTTTAGAAAGTGGCTAAGATTGAG 58.553 37.037 2.10 0.00 37.31 3.02
235 236 7.106239 TCTTTAGAAAGTGGCTAAGATTGAGG 58.894 38.462 2.10 0.00 37.31 3.86
236 237 4.227864 AGAAAGTGGCTAAGATTGAGGG 57.772 45.455 0.00 0.00 0.00 4.30
237 238 3.846588 AGAAAGTGGCTAAGATTGAGGGA 59.153 43.478 0.00 0.00 0.00 4.20
238 239 3.922171 AAGTGGCTAAGATTGAGGGAG 57.078 47.619 0.00 0.00 0.00 4.30
239 240 2.122768 AGTGGCTAAGATTGAGGGAGG 58.877 52.381 0.00 0.00 0.00 4.30
240 241 1.141858 GTGGCTAAGATTGAGGGAGGG 59.858 57.143 0.00 0.00 0.00 4.30
241 242 1.274416 TGGCTAAGATTGAGGGAGGGT 60.274 52.381 0.00 0.00 0.00 4.34
242 243 1.141858 GGCTAAGATTGAGGGAGGGTG 59.858 57.143 0.00 0.00 0.00 4.61
243 244 1.840635 GCTAAGATTGAGGGAGGGTGT 59.159 52.381 0.00 0.00 0.00 4.16
244 245 2.239907 GCTAAGATTGAGGGAGGGTGTT 59.760 50.000 0.00 0.00 0.00 3.32
245 246 3.454812 GCTAAGATTGAGGGAGGGTGTTA 59.545 47.826 0.00 0.00 0.00 2.41
246 247 4.443598 GCTAAGATTGAGGGAGGGTGTTAG 60.444 50.000 0.00 0.00 0.00 2.34
247 248 3.491766 AGATTGAGGGAGGGTGTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
248 249 3.108376 AGATTGAGGGAGGGTGTTAGAC 58.892 50.000 0.00 0.00 0.00 2.59
249 250 2.715763 TTGAGGGAGGGTGTTAGACT 57.284 50.000 0.00 0.00 0.00 3.24
250 251 3.839323 TTGAGGGAGGGTGTTAGACTA 57.161 47.619 0.00 0.00 0.00 2.59
251 252 4.348020 TTGAGGGAGGGTGTTAGACTAT 57.652 45.455 0.00 0.00 0.00 2.12
252 253 3.643237 TGAGGGAGGGTGTTAGACTATG 58.357 50.000 0.00 0.00 0.00 2.23
253 254 3.012502 TGAGGGAGGGTGTTAGACTATGT 59.987 47.826 0.00 0.00 0.00 2.29
254 255 4.231195 TGAGGGAGGGTGTTAGACTATGTA 59.769 45.833 0.00 0.00 0.00 2.29
255 256 5.103215 TGAGGGAGGGTGTTAGACTATGTAT 60.103 44.000 0.00 0.00 0.00 2.29
256 257 6.103649 TGAGGGAGGGTGTTAGACTATGTATA 59.896 42.308 0.00 0.00 0.00 1.47
257 258 6.553857 AGGGAGGGTGTTAGACTATGTATAG 58.446 44.000 0.00 0.00 36.46 1.31
258 259 5.185442 GGGAGGGTGTTAGACTATGTATAGC 59.815 48.000 0.00 0.00 33.68 2.97
259 260 6.011481 GGAGGGTGTTAGACTATGTATAGCT 58.989 44.000 0.00 0.00 33.68 3.32
260 261 6.494146 GGAGGGTGTTAGACTATGTATAGCTT 59.506 42.308 0.00 0.00 33.68 3.74
261 262 7.309316 GGAGGGTGTTAGACTATGTATAGCTTC 60.309 44.444 0.00 0.00 33.68 3.86
262 263 7.299134 AGGGTGTTAGACTATGTATAGCTTCT 58.701 38.462 0.00 0.00 33.68 2.85
263 264 7.231722 AGGGTGTTAGACTATGTATAGCTTCTG 59.768 40.741 0.00 0.00 33.68 3.02
264 265 7.014422 GGGTGTTAGACTATGTATAGCTTCTGT 59.986 40.741 0.00 0.00 33.68 3.41
265 266 9.064706 GGTGTTAGACTATGTATAGCTTCTGTA 57.935 37.037 0.00 0.00 33.68 2.74
266 267 9.881529 GTGTTAGACTATGTATAGCTTCTGTAC 57.118 37.037 0.00 0.00 33.68 2.90
267 268 9.064706 TGTTAGACTATGTATAGCTTCTGTACC 57.935 37.037 0.00 0.00 33.68 3.34
268 269 9.287373 GTTAGACTATGTATAGCTTCTGTACCT 57.713 37.037 0.00 0.00 33.68 3.08
271 272 9.456147 AGACTATGTATAGCTTCTGTACCTATG 57.544 37.037 0.00 0.00 33.68 2.23
272 273 9.233649 GACTATGTATAGCTTCTGTACCTATGT 57.766 37.037 0.00 0.00 33.68 2.29
329 330 9.744125 TTATATATAATGAGATAAGCCACCCCT 57.256 33.333 0.81 0.00 0.00 4.79
331 332 7.682787 ATATAATGAGATAAGCCACCCCTAG 57.317 40.000 0.00 0.00 0.00 3.02
332 333 3.637821 ATGAGATAAGCCACCCCTAGA 57.362 47.619 0.00 0.00 0.00 2.43
333 334 2.964209 TGAGATAAGCCACCCCTAGAG 58.036 52.381 0.00 0.00 0.00 2.43
334 335 2.252714 GAGATAAGCCACCCCTAGAGG 58.747 57.143 0.00 0.00 0.00 3.69
345 346 2.377136 CCTAGAGGGTTGTGCTGGT 58.623 57.895 0.00 0.00 0.00 4.00
346 347 0.693049 CCTAGAGGGTTGTGCTGGTT 59.307 55.000 0.00 0.00 0.00 3.67
347 348 1.339151 CCTAGAGGGTTGTGCTGGTTC 60.339 57.143 0.00 0.00 0.00 3.62
348 349 0.690762 TAGAGGGTTGTGCTGGTTCC 59.309 55.000 0.00 0.00 0.00 3.62
349 350 1.603739 GAGGGTTGTGCTGGTTCCC 60.604 63.158 0.00 0.00 38.50 3.97
350 351 2.600470 GGGTTGTGCTGGTTCCCC 60.600 66.667 0.00 0.00 32.66 4.81
351 352 2.197324 GGTTGTGCTGGTTCCCCA 59.803 61.111 0.00 0.00 38.87 4.96
352 353 1.456705 GGTTGTGCTGGTTCCCCAA 60.457 57.895 0.00 0.00 41.27 4.12
353 354 1.045911 GGTTGTGCTGGTTCCCCAAA 61.046 55.000 0.00 0.00 41.27 3.28
354 355 0.827368 GTTGTGCTGGTTCCCCAAAA 59.173 50.000 0.00 0.00 41.27 2.44
355 356 0.827368 TTGTGCTGGTTCCCCAAAAC 59.173 50.000 0.00 0.00 41.27 2.43
356 357 0.032615 TGTGCTGGTTCCCCAAAACT 60.033 50.000 0.00 0.00 41.27 2.66
357 358 1.119684 GTGCTGGTTCCCCAAAACTT 58.880 50.000 0.00 0.00 41.27 2.66
358 359 2.312390 GTGCTGGTTCCCCAAAACTTA 58.688 47.619 0.00 0.00 41.27 2.24
359 360 2.897326 GTGCTGGTTCCCCAAAACTTAT 59.103 45.455 0.00 0.00 41.27 1.73
360 361 3.323691 GTGCTGGTTCCCCAAAACTTATT 59.676 43.478 0.00 0.00 41.27 1.40
361 362 3.323403 TGCTGGTTCCCCAAAACTTATTG 59.677 43.478 0.00 0.00 41.27 1.90
362 363 3.323691 GCTGGTTCCCCAAAACTTATTGT 59.676 43.478 0.00 0.00 41.27 2.71
363 364 4.560716 GCTGGTTCCCCAAAACTTATTGTC 60.561 45.833 0.00 0.00 41.27 3.18
364 365 4.810345 TGGTTCCCCAAAACTTATTGTCT 58.190 39.130 0.00 0.00 37.98 3.41
365 366 5.212745 TGGTTCCCCAAAACTTATTGTCTT 58.787 37.500 0.00 0.00 37.98 3.01
366 367 6.374588 TGGTTCCCCAAAACTTATTGTCTTA 58.625 36.000 0.00 0.00 37.98 2.10
367 368 6.265876 TGGTTCCCCAAAACTTATTGTCTTAC 59.734 38.462 0.00 0.00 37.98 2.34
368 369 6.265876 GGTTCCCCAAAACTTATTGTCTTACA 59.734 38.462 0.00 0.00 0.00 2.41
369 370 7.368059 GTTCCCCAAAACTTATTGTCTTACAG 58.632 38.462 0.00 0.00 0.00 2.74
370 371 6.007703 TCCCCAAAACTTATTGTCTTACAGG 58.992 40.000 0.00 0.00 0.00 4.00
379 380 1.302192 GTCTTACAGGCGGCAACCA 60.302 57.895 13.08 0.00 0.00 3.67
396 397 3.322466 ACCCAGGCAAGAGGTCGG 61.322 66.667 0.00 0.00 0.00 4.79
424 425 1.551019 GGTCGAAGCCTGTACCCCTT 61.551 60.000 0.00 0.00 0.00 3.95
432 433 1.490490 GCCTGTACCCCTTCATGATGA 59.510 52.381 10.07 0.00 0.00 2.92
493 494 4.114997 GCCATGGCGAAACACGGG 62.115 66.667 23.48 0.00 42.83 5.28
563 568 5.298276 AGAGCGTTTTAGAACATGTCCAAAA 59.702 36.000 0.00 3.57 35.44 2.44
564 569 5.519722 AGCGTTTTAGAACATGTCCAAAAG 58.480 37.500 0.00 0.25 35.44 2.27
630 635 4.120755 CCCCTTGCCTGCCTCCTC 62.121 72.222 0.00 0.00 0.00 3.71
631 636 3.013932 CCCTTGCCTGCCTCCTCT 61.014 66.667 0.00 0.00 0.00 3.69
632 637 2.588989 CCTTGCCTGCCTCCTCTC 59.411 66.667 0.00 0.00 0.00 3.20
633 638 2.588989 CTTGCCTGCCTCCTCTCC 59.411 66.667 0.00 0.00 0.00 3.71
634 639 1.994507 CTTGCCTGCCTCCTCTCCT 60.995 63.158 0.00 0.00 0.00 3.69
635 640 1.970352 CTTGCCTGCCTCCTCTCCTC 61.970 65.000 0.00 0.00 0.00 3.71
636 641 2.042025 GCCTGCCTCCTCTCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
637 642 1.688884 GCCTGCCTCCTCTCCTCTT 60.689 63.158 0.00 0.00 0.00 2.85
811 825 0.882042 AACCGCATCGCATCTCATCC 60.882 55.000 0.00 0.00 0.00 3.51
813 827 1.301165 CGCATCGCATCTCATCCCA 60.301 57.895 0.00 0.00 0.00 4.37
814 828 0.672711 CGCATCGCATCTCATCCCAT 60.673 55.000 0.00 0.00 0.00 4.00
816 830 1.735386 CATCGCATCTCATCCCATCC 58.265 55.000 0.00 0.00 0.00 3.51
817 831 0.248565 ATCGCATCTCATCCCATCCG 59.751 55.000 0.00 0.00 0.00 4.18
818 832 2.031516 CGCATCTCATCCCATCCGC 61.032 63.158 0.00 0.00 0.00 5.54
819 833 2.031516 GCATCTCATCCCATCCGCG 61.032 63.158 0.00 0.00 0.00 6.46
820 834 2.031516 CATCTCATCCCATCCGCGC 61.032 63.158 0.00 0.00 0.00 6.86
821 835 3.580100 ATCTCATCCCATCCGCGCG 62.580 63.158 25.67 25.67 0.00 6.86
852 866 2.962421 TCTGTTTTGGTTGGATTCACCC 59.038 45.455 0.00 0.00 38.00 4.61
854 868 2.325484 GTTTTGGTTGGATTCACCCCT 58.675 47.619 0.00 0.00 38.00 4.79
855 869 2.299013 GTTTTGGTTGGATTCACCCCTC 59.701 50.000 0.00 0.00 38.00 4.30
856 870 1.455822 TTGGTTGGATTCACCCCTCT 58.544 50.000 0.00 0.00 38.00 3.69
857 871 0.698238 TGGTTGGATTCACCCCTCTG 59.302 55.000 0.00 0.00 38.00 3.35
860 874 0.620556 TTGGATTCACCCCTCTGCTC 59.379 55.000 0.00 0.00 38.00 4.26
861 875 1.274703 TGGATTCACCCCTCTGCTCC 61.275 60.000 0.00 0.00 38.00 4.70
862 876 0.985490 GGATTCACCCCTCTGCTCCT 60.985 60.000 0.00 0.00 0.00 3.69
981 1030 3.052082 CCTTGGCACGGTGCTCTG 61.052 66.667 29.92 19.24 44.28 3.35
982 1031 2.281070 CTTGGCACGGTGCTCTGT 60.281 61.111 29.92 0.00 44.28 3.41
983 1032 1.005037 CTTGGCACGGTGCTCTGTA 60.005 57.895 29.92 10.91 44.28 2.74
984 1033 1.291877 CTTGGCACGGTGCTCTGTAC 61.292 60.000 29.92 14.41 44.28 2.90
985 1034 2.809601 GGCACGGTGCTCTGTACG 60.810 66.667 29.92 0.00 44.28 3.67
986 1035 2.049433 GCACGGTGCTCTGTACGT 60.049 61.111 25.08 0.00 40.96 3.57
987 1036 1.663702 GCACGGTGCTCTGTACGTT 60.664 57.895 25.08 0.00 40.96 3.99
988 1037 1.615107 GCACGGTGCTCTGTACGTTC 61.615 60.000 25.08 0.00 40.96 3.95
989 1038 1.007336 CACGGTGCTCTGTACGTTCC 61.007 60.000 0.00 0.00 37.48 3.62
990 1039 1.800315 CGGTGCTCTGTACGTTCCG 60.800 63.158 0.00 0.00 0.00 4.30
991 1040 1.445582 GGTGCTCTGTACGTTCCGG 60.446 63.158 0.00 0.00 0.00 5.14
992 1041 1.445582 GTGCTCTGTACGTTCCGGG 60.446 63.158 0.00 0.00 0.00 5.73
993 1042 2.508663 GCTCTGTACGTTCCGGGC 60.509 66.667 0.00 0.00 0.00 6.13
1115 1164 0.451628 CGTGCAGTGCATTCTCAACG 60.452 55.000 22.87 14.20 41.91 4.10
1158 1226 1.621107 GCCGCAATGTGACATTCTTG 58.379 50.000 8.03 0.10 0.00 3.02
1212 1280 0.341258 AGGAGATGGGGCTCTCTGAA 59.659 55.000 2.73 0.00 41.23 3.02
1270 1344 3.808656 GACGGGGAGGACGACGAC 61.809 72.222 0.00 0.00 34.93 4.34
1444 1521 2.882876 CCGTTCACCGAGGACGAT 59.117 61.111 9.79 0.00 42.66 3.73
1452 1529 4.847516 CGAGGACGATGCGGCGAA 62.848 66.667 12.98 0.00 42.66 4.70
1468 1545 1.880340 GAAGCTGATCCAGTCCGCG 60.880 63.158 0.00 0.00 41.41 6.46
1497 1574 1.069227 GTTCATGGTGCGTTTCCTGAC 60.069 52.381 0.00 0.00 0.00 3.51
1506 1584 3.003275 GTGCGTTTCCTGACTGAAAATCA 59.997 43.478 0.00 0.00 36.09 2.57
1521 1599 5.072055 TGAAAATCATGGTTCAGAGCTCAA 58.928 37.500 17.77 0.00 30.41 3.02
1816 1897 2.093764 CAGGTCTTCAGAGCCAAGGTAG 60.094 54.545 2.33 0.00 43.11 3.18
1817 1898 1.903183 GGTCTTCAGAGCCAAGGTAGT 59.097 52.381 0.00 0.00 36.62 2.73
1818 1899 2.093921 GGTCTTCAGAGCCAAGGTAGTC 60.094 54.545 0.00 0.00 36.62 2.59
1831 1912 1.552792 AGGTAGTCCTGCAGAGCTTTC 59.447 52.381 17.39 9.01 43.33 2.62
1849 1936 1.665916 CGCTGCTGCTACACTGTGT 60.666 57.895 18.51 18.51 36.97 3.72
1852 1939 1.143305 CTGCTGCTACACTGTGTCAC 58.857 55.000 17.99 11.15 0.00 3.67
1853 1940 0.752658 TGCTGCTACACTGTGTCACT 59.247 50.000 17.99 0.00 0.00 3.41
1854 1941 1.143305 GCTGCTACACTGTGTCACTG 58.857 55.000 17.99 14.58 0.00 3.66
1874 1961 0.685097 TAGCACACAGGGACTTGACC 59.315 55.000 0.00 0.00 34.60 4.02
1880 1967 0.321653 ACAGGGACTTGACCGCAATC 60.322 55.000 0.00 0.00 34.60 2.67
1886 1973 1.011904 CTTGACCGCAATCGCATCG 60.012 57.895 0.00 0.00 38.40 3.84
1903 1990 3.182372 GCATCGCTTTGGTCAAGAAAAAC 59.818 43.478 0.00 0.00 33.80 2.43
1929 2016 0.887933 ACGGCTTAATTTGGCACCTG 59.112 50.000 0.00 0.00 0.00 4.00
1942 2029 1.808945 GGCACCTGAATGAACAGTGAG 59.191 52.381 0.00 0.00 36.30 3.51
1948 2035 5.064452 CACCTGAATGAACAGTGAGCTTATC 59.936 44.000 0.00 0.00 36.30 1.75
1949 2036 5.181009 CCTGAATGAACAGTGAGCTTATCA 58.819 41.667 0.00 0.00 36.30 2.15
1955 2048 9.495754 GAATGAACAGTGAGCTTATCATTAAAC 57.504 33.333 0.00 0.00 40.92 2.01
2097 2190 1.736282 CAGGTACGCACGCACATCA 60.736 57.895 0.00 0.00 0.00 3.07
2100 2193 1.081556 GGTACGCACGCACATCATCA 61.082 55.000 0.00 0.00 0.00 3.07
2102 2195 1.409982 TACGCACGCACATCATCACG 61.410 55.000 0.00 0.00 0.00 4.35
2103 2196 2.276868 GCACGCACATCATCACGC 60.277 61.111 0.00 0.00 0.00 5.34
2104 2197 2.743752 GCACGCACATCATCACGCT 61.744 57.895 0.00 0.00 0.00 5.07
2107 2200 0.460811 ACGCACATCATCACGCTGAT 60.461 50.000 0.00 0.00 37.65 2.90
2109 2202 1.860326 CGCACATCATCACGCTGATAA 59.140 47.619 1.07 0.00 34.28 1.75
2111 2204 2.609002 GCACATCATCACGCTGATAACA 59.391 45.455 1.07 0.00 34.28 2.41
2112 2205 3.302935 GCACATCATCACGCTGATAACAG 60.303 47.826 0.00 0.00 45.91 3.16
2113 2206 4.114794 CACATCATCACGCTGATAACAGA 58.885 43.478 3.85 0.00 46.03 3.41
2115 2208 2.814269 TCATCACGCTGATAACAGAGC 58.186 47.619 3.85 0.00 45.38 4.09
2116 2209 1.863454 CATCACGCTGATAACAGAGCC 59.137 52.381 3.85 0.00 45.38 4.70
2117 2210 0.894835 TCACGCTGATAACAGAGCCA 59.105 50.000 3.85 0.00 45.38 4.75
2118 2211 1.275010 TCACGCTGATAACAGAGCCAA 59.725 47.619 3.85 0.00 45.38 4.52
2119 2212 1.662629 CACGCTGATAACAGAGCCAAG 59.337 52.381 3.85 0.00 45.38 3.61
2120 2213 1.293924 CGCTGATAACAGAGCCAAGG 58.706 55.000 3.85 0.00 46.03 3.61
2121 2214 1.406069 CGCTGATAACAGAGCCAAGGT 60.406 52.381 3.85 0.00 46.03 3.50
2122 2215 2.159099 CGCTGATAACAGAGCCAAGGTA 60.159 50.000 3.85 0.00 46.03 3.08
2123 2216 3.198872 GCTGATAACAGAGCCAAGGTAC 58.801 50.000 3.85 0.00 46.03 3.34
2124 2217 3.369471 GCTGATAACAGAGCCAAGGTACA 60.369 47.826 3.85 0.00 46.03 2.90
2125 2218 4.684485 GCTGATAACAGAGCCAAGGTACAT 60.684 45.833 3.85 0.00 46.03 2.29
2126 2219 5.431765 CTGATAACAGAGCCAAGGTACATT 58.568 41.667 0.00 0.00 46.03 2.71
2127 2220 5.815581 TGATAACAGAGCCAAGGTACATTT 58.184 37.500 0.00 0.00 0.00 2.32
2128 2221 5.880332 TGATAACAGAGCCAAGGTACATTTC 59.120 40.000 0.00 0.00 0.00 2.17
2129 2222 3.788227 ACAGAGCCAAGGTACATTTCA 57.212 42.857 0.00 0.00 0.00 2.69
2130 2223 4.307032 ACAGAGCCAAGGTACATTTCAT 57.693 40.909 0.00 0.00 0.00 2.57
2131 2224 4.666512 ACAGAGCCAAGGTACATTTCATT 58.333 39.130 0.00 0.00 0.00 2.57
2133 2226 5.047802 ACAGAGCCAAGGTACATTTCATTTG 60.048 40.000 0.00 0.00 0.00 2.32
2134 2227 4.463891 AGAGCCAAGGTACATTTCATTTGG 59.536 41.667 0.00 0.00 38.42 3.28
2135 2228 3.515104 AGCCAAGGTACATTTCATTTGGG 59.485 43.478 0.00 0.00 36.46 4.12
2136 2229 3.260632 GCCAAGGTACATTTCATTTGGGT 59.739 43.478 0.00 0.00 36.46 4.51
2137 2230 4.620567 GCCAAGGTACATTTCATTTGGGTC 60.621 45.833 0.00 0.00 36.46 4.46
2139 2232 5.105756 CCAAGGTACATTTCATTTGGGTCTC 60.106 44.000 0.00 0.00 33.22 3.36
2148 2250 4.815533 TCATTTGGGTCTCTCTCTTCTG 57.184 45.455 0.00 0.00 0.00 3.02
2164 2266 2.264109 TCTGAACTCGTCTTGATCGC 57.736 50.000 0.00 0.00 0.00 4.58
2165 2267 1.135373 TCTGAACTCGTCTTGATCGCC 60.135 52.381 0.00 0.00 0.00 5.54
2570 2675 3.434940 ACCAAGATCCCACAAGGTAAC 57.565 47.619 0.00 0.00 36.75 2.50
2572 2677 2.308866 CCAAGATCCCACAAGGTAACCT 59.691 50.000 0.00 0.00 36.75 3.50
2577 2682 0.768622 CCCACAAGGTAACCTGTCCA 59.231 55.000 0.00 0.00 32.13 4.02
2579 2684 2.227194 CCACAAGGTAACCTGTCCAAC 58.773 52.381 0.00 0.00 32.13 3.77
2588 2693 2.660064 CCTGTCCAACCCCTCGAGG 61.660 68.421 25.36 25.36 0.00 4.63
2590 2695 3.319198 GTCCAACCCCTCGAGGCA 61.319 66.667 26.87 1.69 0.00 4.75
2605 2710 4.996113 GCACCGCCATGATTTACG 57.004 55.556 0.00 0.00 0.00 3.18
2606 2711 1.298339 GCACCGCCATGATTTACGC 60.298 57.895 0.00 0.00 0.00 4.42
2607 2712 1.355210 CACCGCCATGATTTACGCC 59.645 57.895 0.00 0.00 0.00 5.68
2608 2713 1.095228 CACCGCCATGATTTACGCCT 61.095 55.000 0.00 0.00 0.00 5.52
2609 2714 0.814010 ACCGCCATGATTTACGCCTC 60.814 55.000 0.00 0.00 0.00 4.70
2610 2715 0.813610 CCGCCATGATTTACGCCTCA 60.814 55.000 0.00 0.00 0.00 3.86
2614 2719 2.225019 GCCATGATTTACGCCTCATCAG 59.775 50.000 0.00 0.00 30.52 2.90
2617 2722 2.984562 TGATTTACGCCTCATCAGCAA 58.015 42.857 0.00 0.00 0.00 3.91
2620 2725 2.401583 TTACGCCTCATCAGCAATGT 57.598 45.000 0.00 0.00 36.68 2.71
2621 2726 1.939974 TACGCCTCATCAGCAATGTC 58.060 50.000 0.00 0.00 36.68 3.06
2623 2728 1.086067 CGCCTCATCAGCAATGTCGT 61.086 55.000 0.00 0.00 36.68 4.34
2639 2744 1.741706 GTCGTCCTGTACTGATTCCGA 59.258 52.381 0.60 1.01 0.00 4.55
2642 2747 2.921754 CGTCCTGTACTGATTCCGAAAC 59.078 50.000 0.60 0.00 0.00 2.78
2649 2754 1.002366 CTGATTCCGAAACGCTCTGG 58.998 55.000 0.00 0.00 0.00 3.86
2651 2756 1.270625 TGATTCCGAAACGCTCTGGTT 60.271 47.619 0.00 0.00 0.00 3.67
2715 2823 3.453717 AGCTGCAGAAGGATCATCAAGTA 59.546 43.478 20.43 0.00 0.00 2.24
2719 2827 4.958581 TGCAGAAGGATCATCAAGTAGAGA 59.041 41.667 0.00 0.00 0.00 3.10
2724 2832 4.141287 AGGATCATCAAGTAGAGACCGAG 58.859 47.826 0.00 0.00 0.00 4.63
2725 2833 3.886505 GGATCATCAAGTAGAGACCGAGT 59.113 47.826 0.00 0.00 0.00 4.18
2726 2834 4.261405 GGATCATCAAGTAGAGACCGAGTG 60.261 50.000 0.00 0.00 0.00 3.51
2727 2835 3.687125 TCATCAAGTAGAGACCGAGTGT 58.313 45.455 0.00 0.00 0.00 3.55
2728 2836 3.440522 TCATCAAGTAGAGACCGAGTGTG 59.559 47.826 0.00 0.00 0.00 3.82
2729 2837 2.860009 TCAAGTAGAGACCGAGTGTGT 58.140 47.619 0.00 0.00 0.00 3.72
2776 2884 2.182825 CGGATTACTGAAACCGAGACG 58.817 52.381 0.00 0.00 46.94 4.18
2795 2903 6.030548 AGACGATGGAATGATGTACATAGG 57.969 41.667 8.71 0.00 38.38 2.57
2796 2904 5.540337 AGACGATGGAATGATGTACATAGGT 59.460 40.000 8.71 0.00 38.38 3.08
2822 2930 3.603532 TCAGATCCTGATTGCTGTGTTC 58.396 45.455 0.00 0.00 35.39 3.18
2830 2938 2.875317 TGATTGCTGTGTTCGCTTTGTA 59.125 40.909 0.00 0.00 0.00 2.41
2843 2951 3.002246 TCGCTTTGTATCGCCATGATTTC 59.998 43.478 0.00 0.00 38.57 2.17
2985 3094 2.933906 GTGTTTGTTTGAGTCAGACCGA 59.066 45.455 11.03 0.00 0.00 4.69
3630 3750 3.482722 TTCGATCTACAACACGAGACC 57.517 47.619 0.00 0.00 36.22 3.85
3640 3760 2.386661 ACACGAGACCAACATCCATC 57.613 50.000 0.00 0.00 0.00 3.51
3641 3761 1.623311 ACACGAGACCAACATCCATCA 59.377 47.619 0.00 0.00 0.00 3.07
3681 3801 1.000843 CGATTCCCGCCATGACTATCA 59.999 52.381 0.00 0.00 0.00 2.15
3763 3889 3.099905 ACTGCACAGCTATACTTCTCCA 58.900 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.741388 GCAGAAAGGTATGTAGCACCGAT 60.741 47.826 0.00 0.00 41.21 4.18
1 2 2.418197 GCAGAAAGGTATGTAGCACCGA 60.418 50.000 0.00 0.00 41.21 4.69
5 6 4.640201 GGATTTGCAGAAAGGTATGTAGCA 59.360 41.667 0.00 0.00 0.00 3.49
6 7 4.640201 TGGATTTGCAGAAAGGTATGTAGC 59.360 41.667 0.00 0.00 0.00 3.58
7 8 5.882557 ACTGGATTTGCAGAAAGGTATGTAG 59.117 40.000 6.06 0.00 0.00 2.74
8 9 5.815581 ACTGGATTTGCAGAAAGGTATGTA 58.184 37.500 6.06 0.00 0.00 2.29
9 10 4.666512 ACTGGATTTGCAGAAAGGTATGT 58.333 39.130 6.06 0.00 0.00 2.29
10 11 6.949352 ATACTGGATTTGCAGAAAGGTATG 57.051 37.500 6.06 0.00 0.00 2.39
11 12 7.615365 TGAAATACTGGATTTGCAGAAAGGTAT 59.385 33.333 1.80 0.00 37.90 2.73
12 13 6.945435 TGAAATACTGGATTTGCAGAAAGGTA 59.055 34.615 1.80 0.00 37.90 3.08
13 14 5.774690 TGAAATACTGGATTTGCAGAAAGGT 59.225 36.000 1.80 0.00 37.90 3.50
14 15 6.271488 TGAAATACTGGATTTGCAGAAAGG 57.729 37.500 1.80 0.00 37.90 3.11
15 16 6.255020 GCATGAAATACTGGATTTGCAGAAAG 59.745 38.462 1.80 0.00 37.90 2.62
16 17 6.101332 GCATGAAATACTGGATTTGCAGAAA 58.899 36.000 1.80 0.00 37.90 2.52
17 18 5.394443 GGCATGAAATACTGGATTTGCAGAA 60.394 40.000 1.80 0.00 37.90 3.02
18 19 4.098349 GGCATGAAATACTGGATTTGCAGA 59.902 41.667 1.80 0.00 37.90 4.26
19 20 4.365723 GGCATGAAATACTGGATTTGCAG 58.634 43.478 1.80 0.00 37.90 4.41
20 21 3.132646 GGGCATGAAATACTGGATTTGCA 59.867 43.478 1.80 1.74 37.90 4.08
21 22 3.721035 GGGCATGAAATACTGGATTTGC 58.279 45.455 1.80 0.82 37.90 3.68
22 23 3.631686 TCGGGCATGAAATACTGGATTTG 59.368 43.478 1.80 0.00 37.90 2.32
23 24 3.897239 TCGGGCATGAAATACTGGATTT 58.103 40.909 0.00 0.00 40.62 2.17
24 25 3.576078 TCGGGCATGAAATACTGGATT 57.424 42.857 0.00 0.00 0.00 3.01
25 26 3.576078 TTCGGGCATGAAATACTGGAT 57.424 42.857 0.00 0.00 0.00 3.41
26 27 3.118075 TCATTCGGGCATGAAATACTGGA 60.118 43.478 0.00 0.00 29.81 3.86
27 28 3.213506 TCATTCGGGCATGAAATACTGG 58.786 45.455 0.00 0.00 29.81 4.00
28 29 4.898829 TTCATTCGGGCATGAAATACTG 57.101 40.909 0.00 0.00 39.69 2.74
33 34 2.625314 TGTGTTTCATTCGGGCATGAAA 59.375 40.909 11.83 11.83 46.37 2.69
34 35 2.234143 TGTGTTTCATTCGGGCATGAA 58.766 42.857 0.00 2.57 40.68 2.57
35 36 1.902938 TGTGTTTCATTCGGGCATGA 58.097 45.000 0.00 0.00 0.00 3.07
36 37 2.924926 CAATGTGTTTCATTCGGGCATG 59.075 45.455 0.00 0.00 43.93 4.06
37 38 2.824936 TCAATGTGTTTCATTCGGGCAT 59.175 40.909 0.00 0.00 43.93 4.40
38 39 2.234143 TCAATGTGTTTCATTCGGGCA 58.766 42.857 0.00 0.00 43.93 5.36
39 40 3.244976 CTTCAATGTGTTTCATTCGGGC 58.755 45.455 0.00 0.00 43.93 6.13
40 41 4.503741 ACTTCAATGTGTTTCATTCGGG 57.496 40.909 0.00 0.00 43.93 5.14
41 42 5.399301 GTCAACTTCAATGTGTTTCATTCGG 59.601 40.000 0.00 0.00 43.93 4.30
42 43 6.201517 AGTCAACTTCAATGTGTTTCATTCG 58.798 36.000 0.00 0.00 43.93 3.34
43 44 9.334693 GATAGTCAACTTCAATGTGTTTCATTC 57.665 33.333 0.00 0.00 43.93 2.67
44 45 8.849168 TGATAGTCAACTTCAATGTGTTTCATT 58.151 29.630 0.00 0.00 46.32 2.57
45 46 8.292448 GTGATAGTCAACTTCAATGTGTTTCAT 58.708 33.333 0.00 0.00 38.57 2.57
46 47 7.498900 AGTGATAGTCAACTTCAATGTGTTTCA 59.501 33.333 0.00 0.00 0.00 2.69
47 48 7.865707 AGTGATAGTCAACTTCAATGTGTTTC 58.134 34.615 0.00 0.00 0.00 2.78
48 49 7.807977 AGTGATAGTCAACTTCAATGTGTTT 57.192 32.000 0.00 0.00 0.00 2.83
49 50 7.807977 AAGTGATAGTCAACTTCAATGTGTT 57.192 32.000 0.00 0.00 0.00 3.32
50 51 7.283127 ACAAAGTGATAGTCAACTTCAATGTGT 59.717 33.333 10.23 10.23 32.66 3.72
51 52 7.642669 ACAAAGTGATAGTCAACTTCAATGTG 58.357 34.615 9.41 9.41 30.94 3.21
52 53 7.807977 ACAAAGTGATAGTCAACTTCAATGT 57.192 32.000 0.00 0.00 0.00 2.71
53 54 7.952101 CGTACAAAGTGATAGTCAACTTCAATG 59.048 37.037 0.00 0.00 0.00 2.82
54 55 7.117812 CCGTACAAAGTGATAGTCAACTTCAAT 59.882 37.037 0.00 0.00 0.00 2.57
55 56 6.422701 CCGTACAAAGTGATAGTCAACTTCAA 59.577 38.462 0.00 0.00 0.00 2.69
56 57 5.924254 CCGTACAAAGTGATAGTCAACTTCA 59.076 40.000 0.00 0.00 0.00 3.02
57 58 5.347907 CCCGTACAAAGTGATAGTCAACTTC 59.652 44.000 0.00 0.00 0.00 3.01
58 59 5.011329 TCCCGTACAAAGTGATAGTCAACTT 59.989 40.000 0.00 0.00 0.00 2.66
59 60 4.525487 TCCCGTACAAAGTGATAGTCAACT 59.475 41.667 0.00 0.00 0.00 3.16
60 61 4.813027 TCCCGTACAAAGTGATAGTCAAC 58.187 43.478 0.00 0.00 0.00 3.18
61 62 5.232463 GTTCCCGTACAAAGTGATAGTCAA 58.768 41.667 0.00 0.00 0.00 3.18
62 63 4.616604 CGTTCCCGTACAAAGTGATAGTCA 60.617 45.833 0.00 0.00 0.00 3.41
63 64 3.855950 CGTTCCCGTACAAAGTGATAGTC 59.144 47.826 0.00 0.00 0.00 2.59
64 65 3.841643 CGTTCCCGTACAAAGTGATAGT 58.158 45.455 0.00 0.00 0.00 2.12
78 79 2.259618 CTTCTGTGATACACGTTCCCG 58.740 52.381 0.00 0.00 37.14 5.14
79 80 2.000447 GCTTCTGTGATACACGTTCCC 59.000 52.381 0.00 0.00 37.14 3.97
80 81 2.683968 TGCTTCTGTGATACACGTTCC 58.316 47.619 0.00 0.00 37.14 3.62
81 82 3.741344 AGTTGCTTCTGTGATACACGTTC 59.259 43.478 0.00 0.00 37.14 3.95
82 83 3.728845 AGTTGCTTCTGTGATACACGTT 58.271 40.909 0.00 0.00 37.14 3.99
83 84 3.318017 GAGTTGCTTCTGTGATACACGT 58.682 45.455 0.00 0.00 37.14 4.49
84 85 2.668457 GGAGTTGCTTCTGTGATACACG 59.332 50.000 0.00 0.00 37.14 4.49
85 86 3.664107 TGGAGTTGCTTCTGTGATACAC 58.336 45.455 0.00 0.00 34.56 2.90
86 87 3.578282 TCTGGAGTTGCTTCTGTGATACA 59.422 43.478 0.00 0.00 0.00 2.29
87 88 4.193826 TCTGGAGTTGCTTCTGTGATAC 57.806 45.455 0.00 0.00 0.00 2.24
88 89 4.467438 TGATCTGGAGTTGCTTCTGTGATA 59.533 41.667 0.00 0.00 0.00 2.15
89 90 3.262660 TGATCTGGAGTTGCTTCTGTGAT 59.737 43.478 0.00 0.00 0.00 3.06
90 91 2.634453 TGATCTGGAGTTGCTTCTGTGA 59.366 45.455 0.00 0.00 0.00 3.58
91 92 3.049708 TGATCTGGAGTTGCTTCTGTG 57.950 47.619 0.00 0.00 0.00 3.66
92 93 3.072184 ACTTGATCTGGAGTTGCTTCTGT 59.928 43.478 0.00 0.00 0.00 3.41
93 94 3.672808 ACTTGATCTGGAGTTGCTTCTG 58.327 45.455 0.00 0.00 0.00 3.02
94 95 4.363991 AACTTGATCTGGAGTTGCTTCT 57.636 40.909 8.31 0.00 34.96 2.85
95 96 6.597280 AGATAAACTTGATCTGGAGTTGCTTC 59.403 38.462 9.43 7.66 36.31 3.86
96 97 6.479884 AGATAAACTTGATCTGGAGTTGCTT 58.520 36.000 9.43 0.39 36.31 3.91
97 98 6.059787 AGATAAACTTGATCTGGAGTTGCT 57.940 37.500 9.43 6.26 36.31 3.91
98 99 5.877012 TGAGATAAACTTGATCTGGAGTTGC 59.123 40.000 9.43 4.71 36.31 4.17
99 100 7.986320 AGATGAGATAAACTTGATCTGGAGTTG 59.014 37.037 9.43 0.00 36.31 3.16
100 101 8.088463 AGATGAGATAAACTTGATCTGGAGTT 57.912 34.615 0.00 0.00 37.69 3.01
101 102 7.673641 AGATGAGATAAACTTGATCTGGAGT 57.326 36.000 0.00 0.00 33.71 3.85
102 103 9.695526 CTTAGATGAGATAAACTTGATCTGGAG 57.304 37.037 0.00 0.00 33.71 3.86
103 104 8.646004 CCTTAGATGAGATAAACTTGATCTGGA 58.354 37.037 0.00 0.00 33.71 3.86
104 105 8.646004 TCCTTAGATGAGATAAACTTGATCTGG 58.354 37.037 0.00 0.00 33.71 3.86
109 110 9.823647 GTTGATCCTTAGATGAGATAAACTTGA 57.176 33.333 0.00 0.00 31.27 3.02
110 111 9.829507 AGTTGATCCTTAGATGAGATAAACTTG 57.170 33.333 0.00 0.00 38.14 3.16
112 113 9.829507 CAAGTTGATCCTTAGATGAGATAAACT 57.170 33.333 0.00 0.00 41.51 2.66
113 114 8.555361 GCAAGTTGATCCTTAGATGAGATAAAC 58.445 37.037 7.16 0.00 33.27 2.01
114 115 8.267183 TGCAAGTTGATCCTTAGATGAGATAAA 58.733 33.333 7.16 0.00 30.90 1.40
115 116 7.795047 TGCAAGTTGATCCTTAGATGAGATAA 58.205 34.615 7.16 0.00 30.90 1.75
116 117 7.288621 TCTGCAAGTTGATCCTTAGATGAGATA 59.711 37.037 7.16 0.00 30.25 1.98
117 118 6.099413 TCTGCAAGTTGATCCTTAGATGAGAT 59.901 38.462 7.16 0.00 30.25 2.75
118 119 5.423290 TCTGCAAGTTGATCCTTAGATGAGA 59.577 40.000 7.16 0.00 30.25 3.27
119 120 5.523188 GTCTGCAAGTTGATCCTTAGATGAG 59.477 44.000 7.16 0.00 30.25 2.90
120 121 5.046376 TGTCTGCAAGTTGATCCTTAGATGA 60.046 40.000 7.16 0.00 30.25 2.92
121 122 5.181009 TGTCTGCAAGTTGATCCTTAGATG 58.819 41.667 7.16 0.00 30.25 2.90
122 123 5.426689 TGTCTGCAAGTTGATCCTTAGAT 57.573 39.130 7.16 0.00 32.21 1.98
123 124 4.890158 TGTCTGCAAGTTGATCCTTAGA 57.110 40.909 7.16 0.00 33.76 2.10
124 125 5.426504 AGATGTCTGCAAGTTGATCCTTAG 58.573 41.667 7.16 0.00 33.76 2.18
125 126 5.426689 AGATGTCTGCAAGTTGATCCTTA 57.573 39.130 7.16 0.00 33.76 2.69
126 127 4.298103 AGATGTCTGCAAGTTGATCCTT 57.702 40.909 7.16 0.00 33.76 3.36
127 128 3.996921 AGATGTCTGCAAGTTGATCCT 57.003 42.857 7.16 0.00 33.76 3.24
128 129 4.005650 TGAAGATGTCTGCAAGTTGATCC 58.994 43.478 7.16 0.00 33.76 3.36
129 130 4.694509 AGTGAAGATGTCTGCAAGTTGATC 59.305 41.667 7.16 0.06 32.26 2.92
130 131 4.649692 AGTGAAGATGTCTGCAAGTTGAT 58.350 39.130 7.16 0.00 32.26 2.57
131 132 4.077300 AGTGAAGATGTCTGCAAGTTGA 57.923 40.909 7.16 0.00 32.26 3.18
132 133 5.616424 GCTTAGTGAAGATGTCTGCAAGTTG 60.616 44.000 0.00 0.00 32.26 3.16
133 134 4.453819 GCTTAGTGAAGATGTCTGCAAGTT 59.546 41.667 0.00 0.00 32.26 2.66
134 135 3.999663 GCTTAGTGAAGATGTCTGCAAGT 59.000 43.478 0.00 0.00 32.26 3.16
135 136 3.373439 GGCTTAGTGAAGATGTCTGCAAG 59.627 47.826 0.00 0.00 32.26 4.01
136 137 3.008375 AGGCTTAGTGAAGATGTCTGCAA 59.992 43.478 0.00 0.00 32.26 4.08
137 138 2.568956 AGGCTTAGTGAAGATGTCTGCA 59.431 45.455 0.00 0.00 34.25 4.41
138 139 3.258971 AGGCTTAGTGAAGATGTCTGC 57.741 47.619 0.00 0.00 34.25 4.26
139 140 5.582665 GGTAAAGGCTTAGTGAAGATGTCTG 59.417 44.000 0.00 0.00 34.25 3.51
140 141 5.624738 CGGTAAAGGCTTAGTGAAGATGTCT 60.625 44.000 0.00 0.00 34.25 3.41
141 142 4.567159 CGGTAAAGGCTTAGTGAAGATGTC 59.433 45.833 0.00 0.00 34.25 3.06
142 143 4.504858 CGGTAAAGGCTTAGTGAAGATGT 58.495 43.478 0.00 0.00 34.25 3.06
143 144 3.309954 GCGGTAAAGGCTTAGTGAAGATG 59.690 47.826 0.00 0.00 34.25 2.90
144 145 3.197983 AGCGGTAAAGGCTTAGTGAAGAT 59.802 43.478 0.00 0.00 37.50 2.40
145 146 2.565834 AGCGGTAAAGGCTTAGTGAAGA 59.434 45.455 0.00 0.00 37.50 2.87
146 147 2.673368 CAGCGGTAAAGGCTTAGTGAAG 59.327 50.000 0.00 0.00 39.08 3.02
147 148 2.695359 CAGCGGTAAAGGCTTAGTGAA 58.305 47.619 0.00 0.00 39.08 3.18
148 149 1.674817 GCAGCGGTAAAGGCTTAGTGA 60.675 52.381 0.00 0.00 39.08 3.41
149 150 0.727398 GCAGCGGTAAAGGCTTAGTG 59.273 55.000 0.00 0.00 39.08 2.74
150 151 0.392595 GGCAGCGGTAAAGGCTTAGT 60.393 55.000 0.00 0.00 39.08 2.24
151 152 0.392461 TGGCAGCGGTAAAGGCTTAG 60.392 55.000 0.00 0.00 39.08 2.18
152 153 0.254747 ATGGCAGCGGTAAAGGCTTA 59.745 50.000 0.00 0.00 39.08 3.09
153 154 0.254747 TATGGCAGCGGTAAAGGCTT 59.745 50.000 0.00 0.00 39.08 4.35
154 155 0.179045 CTATGGCAGCGGTAAAGGCT 60.179 55.000 0.00 0.00 42.61 4.58
155 156 0.463833 ACTATGGCAGCGGTAAAGGC 60.464 55.000 0.00 0.00 0.00 4.35
156 157 2.038387 AACTATGGCAGCGGTAAAGG 57.962 50.000 0.00 0.00 0.00 3.11
157 158 3.006940 TCAAACTATGGCAGCGGTAAAG 58.993 45.455 0.00 0.00 0.00 1.85
158 159 3.006940 CTCAAACTATGGCAGCGGTAAA 58.993 45.455 0.00 0.00 0.00 2.01
159 160 2.627945 CTCAAACTATGGCAGCGGTAA 58.372 47.619 0.00 0.00 0.00 2.85
160 161 1.134521 CCTCAAACTATGGCAGCGGTA 60.135 52.381 0.00 0.00 0.00 4.02
161 162 0.392998 CCTCAAACTATGGCAGCGGT 60.393 55.000 0.00 0.00 0.00 5.68
162 163 1.718757 GCCTCAAACTATGGCAGCGG 61.719 60.000 0.00 0.00 45.46 5.52
163 164 1.723870 GCCTCAAACTATGGCAGCG 59.276 57.895 0.00 0.00 45.46 5.18
167 168 2.945668 CCTACAAGCCTCAAACTATGGC 59.054 50.000 0.00 0.00 46.42 4.40
168 169 2.945668 GCCTACAAGCCTCAAACTATGG 59.054 50.000 0.00 0.00 0.00 2.74
169 170 2.609459 CGCCTACAAGCCTCAAACTATG 59.391 50.000 0.00 0.00 0.00 2.23
170 171 2.906354 CGCCTACAAGCCTCAAACTAT 58.094 47.619 0.00 0.00 0.00 2.12
171 172 1.674817 GCGCCTACAAGCCTCAAACTA 60.675 52.381 0.00 0.00 0.00 2.24
172 173 0.955919 GCGCCTACAAGCCTCAAACT 60.956 55.000 0.00 0.00 0.00 2.66
173 174 1.234615 TGCGCCTACAAGCCTCAAAC 61.235 55.000 4.18 0.00 0.00 2.93
174 175 0.536233 TTGCGCCTACAAGCCTCAAA 60.536 50.000 4.18 0.00 0.00 2.69
175 176 0.322456 ATTGCGCCTACAAGCCTCAA 60.322 50.000 4.18 0.00 31.96 3.02
176 177 0.744414 GATTGCGCCTACAAGCCTCA 60.744 55.000 4.18 0.00 31.96 3.86
177 178 0.462759 AGATTGCGCCTACAAGCCTC 60.463 55.000 4.18 0.00 36.61 4.70
178 179 0.035056 AAGATTGCGCCTACAAGCCT 60.035 50.000 4.18 0.00 36.61 4.58
179 180 1.330829 GTAAGATTGCGCCTACAAGCC 59.669 52.381 4.18 0.00 36.61 4.35
180 181 1.330829 GGTAAGATTGCGCCTACAAGC 59.669 52.381 4.18 0.00 36.20 4.01
181 182 1.940613 GGGTAAGATTGCGCCTACAAG 59.059 52.381 4.18 0.00 31.96 3.16
182 183 1.557832 AGGGTAAGATTGCGCCTACAA 59.442 47.619 4.18 0.00 0.00 2.41
183 184 1.200519 AGGGTAAGATTGCGCCTACA 58.799 50.000 4.18 0.00 0.00 2.74
184 185 2.158943 AGAAGGGTAAGATTGCGCCTAC 60.159 50.000 4.18 0.00 0.00 3.18
185 186 2.102588 GAGAAGGGTAAGATTGCGCCTA 59.897 50.000 4.18 0.00 0.00 3.93
186 187 0.912486 AGAAGGGTAAGATTGCGCCT 59.088 50.000 4.18 0.00 0.00 5.52
187 188 1.300481 GAGAAGGGTAAGATTGCGCC 58.700 55.000 4.18 0.00 0.00 6.53
188 189 0.931005 CGAGAAGGGTAAGATTGCGC 59.069 55.000 0.00 0.00 0.00 6.09
189 190 1.134788 ACCGAGAAGGGTAAGATTGCG 60.135 52.381 0.00 0.00 46.96 4.85
190 191 2.693267 ACCGAGAAGGGTAAGATTGC 57.307 50.000 0.00 0.00 46.96 3.56
191 192 4.473477 AGAACCGAGAAGGGTAAGATTG 57.527 45.455 0.00 0.00 42.60 2.67
192 193 5.500546 AAAGAACCGAGAAGGGTAAGATT 57.499 39.130 0.00 0.00 42.60 2.40
193 194 5.956563 TCTAAAGAACCGAGAAGGGTAAGAT 59.043 40.000 0.00 0.00 42.60 2.40
194 195 5.327732 TCTAAAGAACCGAGAAGGGTAAGA 58.672 41.667 0.00 0.00 42.60 2.10
195 196 5.656213 TCTAAAGAACCGAGAAGGGTAAG 57.344 43.478 0.00 0.00 42.60 2.34
196 197 6.042437 ACTTTCTAAAGAACCGAGAAGGGTAA 59.958 38.462 9.37 0.00 42.60 2.85
197 198 5.541484 ACTTTCTAAAGAACCGAGAAGGGTA 59.459 40.000 9.37 0.00 42.60 3.69
199 200 4.691216 CACTTTCTAAAGAACCGAGAAGGG 59.309 45.833 9.37 0.00 40.94 3.95
200 201 4.691216 CCACTTTCTAAAGAACCGAGAAGG 59.309 45.833 9.37 0.00 41.73 3.46
201 202 4.152580 GCCACTTTCTAAAGAACCGAGAAG 59.847 45.833 9.37 0.00 39.31 2.85
202 203 4.062991 GCCACTTTCTAAAGAACCGAGAA 58.937 43.478 9.37 0.00 39.31 2.87
203 204 3.323979 AGCCACTTTCTAAAGAACCGAGA 59.676 43.478 9.37 0.00 39.31 4.04
204 205 3.665190 AGCCACTTTCTAAAGAACCGAG 58.335 45.455 9.37 0.00 39.31 4.63
205 206 3.764237 AGCCACTTTCTAAAGAACCGA 57.236 42.857 9.37 0.00 39.31 4.69
206 207 5.235516 TCTTAGCCACTTTCTAAAGAACCG 58.764 41.667 9.37 0.00 39.31 4.44
207 208 7.390718 TCAATCTTAGCCACTTTCTAAAGAACC 59.609 37.037 9.37 0.00 39.31 3.62
208 209 8.324163 TCAATCTTAGCCACTTTCTAAAGAAC 57.676 34.615 9.37 0.00 39.31 3.01
209 210 7.607991 CCTCAATCTTAGCCACTTTCTAAAGAA 59.392 37.037 9.37 0.00 39.31 2.52
210 211 7.106239 CCTCAATCTTAGCCACTTTCTAAAGA 58.894 38.462 9.37 0.00 39.31 2.52
211 212 6.317391 CCCTCAATCTTAGCCACTTTCTAAAG 59.683 42.308 0.90 0.90 41.73 1.85
212 213 6.012858 TCCCTCAATCTTAGCCACTTTCTAAA 60.013 38.462 0.00 0.00 0.00 1.85
213 214 5.487488 TCCCTCAATCTTAGCCACTTTCTAA 59.513 40.000 0.00 0.00 0.00 2.10
214 215 5.030147 TCCCTCAATCTTAGCCACTTTCTA 58.970 41.667 0.00 0.00 0.00 2.10
215 216 3.846588 TCCCTCAATCTTAGCCACTTTCT 59.153 43.478 0.00 0.00 0.00 2.52
216 217 4.195416 CTCCCTCAATCTTAGCCACTTTC 58.805 47.826 0.00 0.00 0.00 2.62
217 218 3.054065 CCTCCCTCAATCTTAGCCACTTT 60.054 47.826 0.00 0.00 0.00 2.66
218 219 2.507471 CCTCCCTCAATCTTAGCCACTT 59.493 50.000 0.00 0.00 0.00 3.16
219 220 2.122768 CCTCCCTCAATCTTAGCCACT 58.877 52.381 0.00 0.00 0.00 4.00
220 221 1.141858 CCCTCCCTCAATCTTAGCCAC 59.858 57.143 0.00 0.00 0.00 5.01
221 222 1.274416 ACCCTCCCTCAATCTTAGCCA 60.274 52.381 0.00 0.00 0.00 4.75
222 223 1.141858 CACCCTCCCTCAATCTTAGCC 59.858 57.143 0.00 0.00 0.00 3.93
223 224 1.840635 ACACCCTCCCTCAATCTTAGC 59.159 52.381 0.00 0.00 0.00 3.09
224 225 4.962995 TCTAACACCCTCCCTCAATCTTAG 59.037 45.833 0.00 0.00 0.00 2.18
225 226 4.715297 GTCTAACACCCTCCCTCAATCTTA 59.285 45.833 0.00 0.00 0.00 2.10
226 227 3.519913 GTCTAACACCCTCCCTCAATCTT 59.480 47.826 0.00 0.00 0.00 2.40
227 228 3.108376 GTCTAACACCCTCCCTCAATCT 58.892 50.000 0.00 0.00 0.00 2.40
228 229 3.108376 AGTCTAACACCCTCCCTCAATC 58.892 50.000 0.00 0.00 0.00 2.67
229 230 3.207044 AGTCTAACACCCTCCCTCAAT 57.793 47.619 0.00 0.00 0.00 2.57
230 231 2.715763 AGTCTAACACCCTCCCTCAA 57.284 50.000 0.00 0.00 0.00 3.02
231 232 3.012502 ACATAGTCTAACACCCTCCCTCA 59.987 47.826 0.00 0.00 0.00 3.86
232 233 3.644335 ACATAGTCTAACACCCTCCCTC 58.356 50.000 0.00 0.00 0.00 4.30
233 234 3.778622 ACATAGTCTAACACCCTCCCT 57.221 47.619 0.00 0.00 0.00 4.20
234 235 5.185442 GCTATACATAGTCTAACACCCTCCC 59.815 48.000 0.00 0.00 32.96 4.30
235 236 6.011481 AGCTATACATAGTCTAACACCCTCC 58.989 44.000 0.00 0.00 32.96 4.30
236 237 7.449086 AGAAGCTATACATAGTCTAACACCCTC 59.551 40.741 0.00 0.00 32.96 4.30
237 238 7.231722 CAGAAGCTATACATAGTCTAACACCCT 59.768 40.741 0.00 0.00 32.96 4.34
238 239 7.014422 ACAGAAGCTATACATAGTCTAACACCC 59.986 40.741 0.00 0.00 32.96 4.61
239 240 7.942990 ACAGAAGCTATACATAGTCTAACACC 58.057 38.462 0.00 0.00 32.96 4.16
240 241 9.881529 GTACAGAAGCTATACATAGTCTAACAC 57.118 37.037 0.00 0.00 32.96 3.32
241 242 9.064706 GGTACAGAAGCTATACATAGTCTAACA 57.935 37.037 0.00 0.00 32.96 2.41
242 243 9.287373 AGGTACAGAAGCTATACATAGTCTAAC 57.713 37.037 0.00 0.00 32.98 2.34
245 246 9.456147 CATAGGTACAGAAGCTATACATAGTCT 57.544 37.037 0.00 0.00 45.12 3.24
246 247 9.233649 ACATAGGTACAGAAGCTATACATAGTC 57.766 37.037 0.00 0.00 45.12 2.59
303 304 9.744125 AGGGGTGGCTTATCTCATTATATATAA 57.256 33.333 7.62 7.62 0.00 0.98
305 306 9.386122 CTAGGGGTGGCTTATCTCATTATATAT 57.614 37.037 0.00 0.00 0.00 0.86
306 307 8.574853 TCTAGGGGTGGCTTATCTCATTATATA 58.425 37.037 0.00 0.00 0.00 0.86
307 308 7.430844 TCTAGGGGTGGCTTATCTCATTATAT 58.569 38.462 0.00 0.00 0.00 0.86
308 309 6.811574 TCTAGGGGTGGCTTATCTCATTATA 58.188 40.000 0.00 0.00 0.00 0.98
309 310 5.665701 TCTAGGGGTGGCTTATCTCATTAT 58.334 41.667 0.00 0.00 0.00 1.28
310 311 5.087323 CTCTAGGGGTGGCTTATCTCATTA 58.913 45.833 0.00 0.00 0.00 1.90
311 312 3.906846 CTCTAGGGGTGGCTTATCTCATT 59.093 47.826 0.00 0.00 0.00 2.57
312 313 3.515562 CTCTAGGGGTGGCTTATCTCAT 58.484 50.000 0.00 0.00 0.00 2.90
313 314 2.426414 CCTCTAGGGGTGGCTTATCTCA 60.426 54.545 0.00 0.00 0.00 3.27
314 315 2.252714 CCTCTAGGGGTGGCTTATCTC 58.747 57.143 0.00 0.00 0.00 2.75
315 316 2.407340 CCTCTAGGGGTGGCTTATCT 57.593 55.000 0.00 0.00 0.00 1.98
327 328 0.693049 AACCAGCACAACCCTCTAGG 59.307 55.000 0.00 0.00 43.78 3.02
328 329 1.339151 GGAACCAGCACAACCCTCTAG 60.339 57.143 0.00 0.00 0.00 2.43
329 330 0.690762 GGAACCAGCACAACCCTCTA 59.309 55.000 0.00 0.00 0.00 2.43
330 331 1.456287 GGAACCAGCACAACCCTCT 59.544 57.895 0.00 0.00 0.00 3.69
331 332 4.081050 GGAACCAGCACAACCCTC 57.919 61.111 0.00 0.00 0.00 4.30
343 344 7.523216 CTGTAAGACAATAAGTTTTGGGGAACC 60.523 40.741 0.00 0.00 46.42 3.62
344 345 7.279750 TGTAAGACAATAAGTTTTGGGGAAC 57.720 36.000 0.00 0.00 0.00 3.62
345 346 6.492087 CCTGTAAGACAATAAGTTTTGGGGAA 59.508 38.462 0.00 0.00 34.07 3.97
346 347 6.007703 CCTGTAAGACAATAAGTTTTGGGGA 58.992 40.000 0.00 0.00 34.07 4.81
347 348 5.336451 GCCTGTAAGACAATAAGTTTTGGGG 60.336 44.000 0.00 0.00 34.07 4.96
348 349 5.619086 CGCCTGTAAGACAATAAGTTTTGGG 60.619 44.000 0.00 0.00 34.07 4.12
349 350 5.390613 CGCCTGTAAGACAATAAGTTTTGG 58.609 41.667 0.00 0.00 34.07 3.28
350 351 5.390613 CCGCCTGTAAGACAATAAGTTTTG 58.609 41.667 0.00 0.00 34.07 2.44
351 352 4.082949 GCCGCCTGTAAGACAATAAGTTTT 60.083 41.667 0.00 0.00 34.07 2.43
352 353 3.439129 GCCGCCTGTAAGACAATAAGTTT 59.561 43.478 0.00 0.00 34.07 2.66
353 354 3.007635 GCCGCCTGTAAGACAATAAGTT 58.992 45.455 0.00 0.00 34.07 2.66
354 355 2.027561 TGCCGCCTGTAAGACAATAAGT 60.028 45.455 0.00 0.00 34.07 2.24
355 356 2.627945 TGCCGCCTGTAAGACAATAAG 58.372 47.619 0.00 0.00 34.07 1.73
356 357 2.745281 GTTGCCGCCTGTAAGACAATAA 59.255 45.455 0.00 0.00 34.07 1.40
357 358 2.352388 GTTGCCGCCTGTAAGACAATA 58.648 47.619 0.00 0.00 34.07 1.90
358 359 1.165270 GTTGCCGCCTGTAAGACAAT 58.835 50.000 0.00 0.00 34.07 2.71
359 360 0.887387 GGTTGCCGCCTGTAAGACAA 60.887 55.000 0.00 0.00 34.07 3.18
360 361 1.302192 GGTTGCCGCCTGTAAGACA 60.302 57.895 0.00 0.00 34.07 3.41
361 362 1.302192 TGGTTGCCGCCTGTAAGAC 60.302 57.895 0.00 0.00 34.07 3.01
362 363 1.302192 GTGGTTGCCGCCTGTAAGA 60.302 57.895 0.00 0.00 34.07 2.10
363 364 3.263941 GTGGTTGCCGCCTGTAAG 58.736 61.111 0.00 0.00 0.00 2.34
379 380 3.322466 CCGACCTCTTGCCTGGGT 61.322 66.667 0.00 0.00 35.89 4.51
424 425 4.812626 CGTCAGTCCATTCATTCATCATGA 59.187 41.667 0.00 0.00 40.43 3.07
432 433 2.303022 AGTCACCGTCAGTCCATTCATT 59.697 45.455 0.00 0.00 0.00 2.57
493 494 1.914108 AGGGGGTTAGTGGTTAAGAGC 59.086 52.381 0.00 0.00 0.00 4.09
524 528 1.536284 CGCTCTGATTCCCGGTAACTC 60.536 57.143 0.00 0.00 0.00 3.01
530 534 1.933853 CTAAAACGCTCTGATTCCCGG 59.066 52.381 0.00 0.00 0.00 5.73
531 535 2.888594 TCTAAAACGCTCTGATTCCCG 58.111 47.619 0.00 0.00 0.00 5.14
563 568 0.614415 CCACACTGCTCTCCCTCTCT 60.614 60.000 0.00 0.00 0.00 3.10
564 569 0.613292 TCCACACTGCTCTCCCTCTC 60.613 60.000 0.00 0.00 0.00 3.20
623 628 0.177836 GCAGAAAGAGGAGAGGAGGC 59.822 60.000 0.00 0.00 0.00 4.70
625 630 1.481772 CTGGCAGAAAGAGGAGAGGAG 59.518 57.143 9.42 0.00 0.00 3.69
626 631 1.077828 TCTGGCAGAAAGAGGAGAGGA 59.922 52.381 16.28 0.00 0.00 3.71
627 632 1.206849 GTCTGGCAGAAAGAGGAGAGG 59.793 57.143 20.62 0.00 0.00 3.69
629 634 1.270907 GGTCTGGCAGAAAGAGGAGA 58.729 55.000 20.62 0.00 0.00 3.71
630 635 0.251634 GGGTCTGGCAGAAAGAGGAG 59.748 60.000 20.62 0.00 0.00 3.69
631 636 0.473694 TGGGTCTGGCAGAAAGAGGA 60.474 55.000 20.62 0.00 0.00 3.71
632 637 0.401738 TTGGGTCTGGCAGAAAGAGG 59.598 55.000 20.62 0.00 0.00 3.69
633 638 2.276732 TTTGGGTCTGGCAGAAAGAG 57.723 50.000 20.62 0.00 0.00 2.85
634 639 2.174639 TCTTTTGGGTCTGGCAGAAAGA 59.825 45.455 20.62 19.97 32.51 2.52
635 640 2.586425 TCTTTTGGGTCTGGCAGAAAG 58.414 47.619 20.62 17.99 0.00 2.62
636 641 2.746279 TCTTTTGGGTCTGGCAGAAA 57.254 45.000 20.62 7.45 0.00 2.52
637 642 2.746279 TTCTTTTGGGTCTGGCAGAA 57.254 45.000 20.62 0.00 0.00 3.02
681 686 3.844090 GACAGGGAGAGGCGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
682 687 2.043450 AGACAGGGAGAGGCGAGG 60.043 66.667 0.00 0.00 0.00 4.63
683 688 1.662438 GACAGACAGGGAGAGGCGAG 61.662 65.000 0.00 0.00 0.00 5.03
684 689 1.679305 GACAGACAGGGAGAGGCGA 60.679 63.158 0.00 0.00 0.00 5.54
685 690 1.326213 ATGACAGACAGGGAGAGGCG 61.326 60.000 0.00 0.00 0.00 5.52
686 691 0.463620 GATGACAGACAGGGAGAGGC 59.536 60.000 0.00 0.00 0.00 4.70
687 692 1.857965 TGATGACAGACAGGGAGAGG 58.142 55.000 0.00 0.00 0.00 3.69
760 765 1.015109 TGCAACTTTTGTCCGCGTAA 58.985 45.000 4.92 0.00 34.60 3.18
761 766 0.305313 GTGCAACTTTTGTCCGCGTA 59.695 50.000 4.92 0.00 34.60 4.42
762 767 1.063488 GTGCAACTTTTGTCCGCGT 59.937 52.632 4.92 0.00 34.60 6.01
764 769 1.657181 CGGTGCAACTTTTGTCCGC 60.657 57.895 0.00 0.00 40.73 5.54
765 770 0.378962 TTCGGTGCAACTTTTGTCCG 59.621 50.000 0.00 0.16 44.71 4.79
767 772 1.133407 TGGTTCGGTGCAACTTTTGTC 59.867 47.619 0.00 0.00 36.74 3.18
768 773 1.178276 TGGTTCGGTGCAACTTTTGT 58.822 45.000 0.00 0.00 36.74 2.83
769 774 2.285827 TTGGTTCGGTGCAACTTTTG 57.714 45.000 0.00 0.00 36.74 2.44
770 775 2.887337 CTTTGGTTCGGTGCAACTTTT 58.113 42.857 0.00 0.00 36.74 2.27
819 833 2.105960 AAAACAGAGTCTGCGTGCGC 62.106 55.000 20.31 9.85 42.35 6.09
820 834 0.383491 CAAAACAGAGTCTGCGTGCG 60.383 55.000 20.31 1.61 34.37 5.34
821 835 0.040958 CCAAAACAGAGTCTGCGTGC 60.041 55.000 20.31 0.00 34.37 5.34
822 836 1.299541 ACCAAAACAGAGTCTGCGTG 58.700 50.000 20.31 14.36 34.37 5.34
823 837 1.670811 CAACCAAAACAGAGTCTGCGT 59.329 47.619 20.31 5.56 34.37 5.24
824 838 1.002468 CCAACCAAAACAGAGTCTGCG 60.002 52.381 20.31 6.30 34.37 5.18
825 839 2.297701 TCCAACCAAAACAGAGTCTGC 58.702 47.619 20.31 0.00 34.37 4.26
826 840 4.580167 TGAATCCAACCAAAACAGAGTCTG 59.420 41.667 18.83 18.83 37.52 3.51
827 841 4.580580 GTGAATCCAACCAAAACAGAGTCT 59.419 41.667 0.00 0.00 0.00 3.24
828 842 4.261614 GGTGAATCCAACCAAAACAGAGTC 60.262 45.833 0.00 0.00 35.97 3.36
829 843 3.636764 GGTGAATCCAACCAAAACAGAGT 59.363 43.478 0.00 0.00 35.97 3.24
830 844 4.243007 GGTGAATCCAACCAAAACAGAG 57.757 45.455 0.00 0.00 35.97 3.35
852 866 1.104577 GGTACGGAGAGGAGCAGAGG 61.105 65.000 0.00 0.00 0.00 3.69
854 868 4.659986 GGTACGGAGAGGAGCAGA 57.340 61.111 0.00 0.00 0.00 4.26
884 898 4.554363 CTAGCGGCCACGGACTCG 62.554 72.222 2.24 0.00 41.36 4.18
1102 1151 1.154150 GCTGCCGTTGAGAATGCAC 60.154 57.895 0.00 0.00 0.00 4.57
1115 1164 0.457681 GACTGAACTCTCGAGCTGCC 60.458 60.000 7.81 0.00 0.00 4.85
1158 1226 0.799393 GCTCCTTTCCTGCGAAGAAC 59.201 55.000 0.00 0.00 0.00 3.01
1192 1260 0.398239 TCAGAGAGCCCCATCTCCTG 60.398 60.000 0.24 0.00 45.77 3.86
1212 1280 4.742201 CGCCGCACAGGTACAGCT 62.742 66.667 0.00 0.00 43.70 4.24
1376 1453 2.546494 GCACTTGTTCAGCGTGGCT 61.546 57.895 0.00 0.00 40.77 4.75
1444 1521 4.081185 TGGATCAGCTTCGCCGCA 62.081 61.111 0.00 0.00 0.00 5.69
1452 1529 2.564553 GAACGCGGACTGGATCAGCT 62.565 60.000 12.47 0.00 45.46 4.24
1468 1545 1.168714 GCACCATGAACCTCCTGAAC 58.831 55.000 0.00 0.00 0.00 3.18
1497 1574 4.698780 TGAGCTCTGAACCATGATTTTCAG 59.301 41.667 16.19 18.48 46.87 3.02
1506 1584 2.157738 GCAGTTTGAGCTCTGAACCAT 58.842 47.619 21.90 8.77 34.02 3.55
1853 1940 1.070134 GTCAAGTCCCTGTGTGCTACA 59.930 52.381 0.00 0.00 37.78 2.74
1854 1941 1.608283 GGTCAAGTCCCTGTGTGCTAC 60.608 57.143 0.00 0.00 0.00 3.58
1880 1967 0.516877 TTCTTGACCAAAGCGATGCG 59.483 50.000 0.00 0.00 35.69 4.73
1886 1973 4.494484 ACACTGTTTTTCTTGACCAAAGC 58.506 39.130 0.00 0.00 35.69 3.51
1903 1990 3.057876 TGCCAAATTAAGCCGTAACACTG 60.058 43.478 0.00 0.00 0.00 3.66
1929 2016 9.495754 GTTTAATGATAAGCTCACTGTTCATTC 57.504 33.333 5.24 0.00 38.39 2.67
1955 2048 2.341257 CACTCCTCCTGAAACATCACG 58.659 52.381 0.00 0.00 0.00 4.35
2097 2190 1.482182 TGGCTCTGTTATCAGCGTGAT 59.518 47.619 5.92 5.92 40.72 3.06
2100 2193 1.406069 CCTTGGCTCTGTTATCAGCGT 60.406 52.381 0.00 0.00 41.10 5.07
2102 2195 2.409948 ACCTTGGCTCTGTTATCAGC 57.590 50.000 0.00 0.00 41.10 4.26
2103 2196 4.471904 TGTACCTTGGCTCTGTTATCAG 57.528 45.455 0.00 0.00 42.54 2.90
2104 2197 5.435686 AATGTACCTTGGCTCTGTTATCA 57.564 39.130 0.00 0.00 0.00 2.15
2107 2200 5.235850 TGAAATGTACCTTGGCTCTGTTA 57.764 39.130 0.00 0.00 0.00 2.41
2109 2202 3.788227 TGAAATGTACCTTGGCTCTGT 57.212 42.857 0.00 0.00 0.00 3.41
2111 2204 4.463891 CCAAATGAAATGTACCTTGGCTCT 59.536 41.667 0.00 0.00 0.00 4.09
2112 2205 4.381932 CCCAAATGAAATGTACCTTGGCTC 60.382 45.833 0.00 0.00 33.46 4.70
2113 2206 3.515104 CCCAAATGAAATGTACCTTGGCT 59.485 43.478 0.00 0.00 33.46 4.75
2115 2208 4.772100 AGACCCAAATGAAATGTACCTTGG 59.228 41.667 0.00 0.00 34.38 3.61
2116 2209 5.711976 AGAGACCCAAATGAAATGTACCTTG 59.288 40.000 0.00 0.00 0.00 3.61
2117 2210 5.892348 AGAGACCCAAATGAAATGTACCTT 58.108 37.500 0.00 0.00 0.00 3.50
2118 2211 5.251700 AGAGAGACCCAAATGAAATGTACCT 59.748 40.000 0.00 0.00 0.00 3.08
2119 2212 5.501156 AGAGAGACCCAAATGAAATGTACC 58.499 41.667 0.00 0.00 0.00 3.34
2120 2213 6.410540 AGAGAGAGACCCAAATGAAATGTAC 58.589 40.000 0.00 0.00 0.00 2.90
2121 2214 6.627087 AGAGAGAGACCCAAATGAAATGTA 57.373 37.500 0.00 0.00 0.00 2.29
2122 2215 5.511386 AGAGAGAGACCCAAATGAAATGT 57.489 39.130 0.00 0.00 0.00 2.71
2123 2216 6.093771 CAGAAGAGAGAGACCCAAATGAAATG 59.906 42.308 0.00 0.00 0.00 2.32
2124 2217 6.013032 TCAGAAGAGAGAGACCCAAATGAAAT 60.013 38.462 0.00 0.00 0.00 2.17
2125 2218 5.307976 TCAGAAGAGAGAGACCCAAATGAAA 59.692 40.000 0.00 0.00 0.00 2.69
2126 2219 4.840680 TCAGAAGAGAGAGACCCAAATGAA 59.159 41.667 0.00 0.00 0.00 2.57
2127 2220 4.420206 TCAGAAGAGAGAGACCCAAATGA 58.580 43.478 0.00 0.00 0.00 2.57
2128 2221 4.815533 TCAGAAGAGAGAGACCCAAATG 57.184 45.455 0.00 0.00 0.00 2.32
2129 2222 4.843516 AGTTCAGAAGAGAGAGACCCAAAT 59.156 41.667 0.00 0.00 0.00 2.32
2130 2223 4.227197 AGTTCAGAAGAGAGAGACCCAAA 58.773 43.478 0.00 0.00 0.00 3.28
2131 2224 3.829601 GAGTTCAGAAGAGAGAGACCCAA 59.170 47.826 0.00 0.00 0.00 4.12
2133 2226 2.422127 CGAGTTCAGAAGAGAGAGACCC 59.578 54.545 0.00 0.00 0.00 4.46
2134 2227 3.078837 ACGAGTTCAGAAGAGAGAGACC 58.921 50.000 0.00 0.00 0.00 3.85
2135 2228 4.000988 AGACGAGTTCAGAAGAGAGAGAC 58.999 47.826 0.00 0.00 0.00 3.36
2136 2229 4.280436 AGACGAGTTCAGAAGAGAGAGA 57.720 45.455 0.00 0.00 0.00 3.10
2137 2230 4.454161 TCAAGACGAGTTCAGAAGAGAGAG 59.546 45.833 0.00 0.00 0.00 3.20
2139 2232 4.757799 TCAAGACGAGTTCAGAAGAGAG 57.242 45.455 0.00 0.00 0.00 3.20
2570 2675 2.660064 CCTCGAGGGGTTGGACAGG 61.660 68.421 24.62 0.00 0.00 4.00
2572 2677 3.319198 GCCTCGAGGGGTTGGACA 61.319 66.667 32.06 0.00 35.18 4.02
2588 2693 1.298339 GCGTAAATCATGGCGGTGC 60.298 57.895 0.00 0.00 0.00 5.01
2590 2695 0.814010 GAGGCGTAAATCATGGCGGT 60.814 55.000 0.00 0.00 43.43 5.68
2602 2707 1.802508 CGACATTGCTGATGAGGCGTA 60.803 52.381 7.50 0.00 39.15 4.42
2603 2708 1.086067 CGACATTGCTGATGAGGCGT 61.086 55.000 7.50 0.00 39.15 5.68
2605 2710 0.654683 GACGACATTGCTGATGAGGC 59.345 55.000 7.50 0.91 39.15 4.70
2606 2711 1.134580 AGGACGACATTGCTGATGAGG 60.135 52.381 7.50 2.34 39.15 3.86
2607 2712 1.931841 CAGGACGACATTGCTGATGAG 59.068 52.381 7.50 4.32 37.11 2.90
2608 2713 1.276138 ACAGGACGACATTGCTGATGA 59.724 47.619 7.50 0.00 37.11 2.92
2609 2714 1.730501 ACAGGACGACATTGCTGATG 58.269 50.000 0.00 0.00 37.11 3.07
2610 2715 2.497675 AGTACAGGACGACATTGCTGAT 59.502 45.455 0.00 0.00 37.11 2.90
2614 2719 2.363788 TCAGTACAGGACGACATTGC 57.636 50.000 0.00 0.00 0.00 3.56
2617 2722 2.099263 CGGAATCAGTACAGGACGACAT 59.901 50.000 0.00 0.00 0.00 3.06
2620 2725 2.118313 TCGGAATCAGTACAGGACGA 57.882 50.000 0.00 0.00 0.00 4.20
2621 2726 2.921754 GTTTCGGAATCAGTACAGGACG 59.078 50.000 0.00 0.00 0.00 4.79
2623 2728 2.673043 GCGTTTCGGAATCAGTACAGGA 60.673 50.000 0.00 0.00 0.00 3.86
2639 2744 1.676006 CCTTGTCAAACCAGAGCGTTT 59.324 47.619 0.00 0.00 36.38 3.60
2642 2747 0.588252 CACCTTGTCAAACCAGAGCG 59.412 55.000 0.00 0.00 0.00 5.03
2649 2754 3.243201 CCTTCTTGCTCACCTTGTCAAAC 60.243 47.826 0.00 0.00 0.00 2.93
2651 2756 2.575532 CCTTCTTGCTCACCTTGTCAA 58.424 47.619 0.00 0.00 0.00 3.18
2715 2823 2.574955 GGCCACACACTCGGTCTCT 61.575 63.158 0.00 0.00 0.00 3.10
2719 2827 2.927580 CGTAGGCCACACACTCGGT 61.928 63.158 5.01 0.00 0.00 4.69
2724 2832 1.153429 GGGATCGTAGGCCACACAC 60.153 63.158 5.01 0.00 0.00 3.82
2725 2833 2.363975 GGGGATCGTAGGCCACACA 61.364 63.158 5.01 0.00 0.00 3.72
2726 2834 2.504519 GGGGATCGTAGGCCACAC 59.495 66.667 5.01 0.49 0.00 3.82
2727 2835 3.151710 CGGGGATCGTAGGCCACA 61.152 66.667 5.01 0.00 0.00 4.17
2728 2836 4.603946 GCGGGGATCGTAGGCCAC 62.604 72.222 5.01 0.00 41.72 5.01
2776 2884 8.682936 AAGAAACCTATGTACATCATTCCATC 57.317 34.615 12.68 4.05 37.91 3.51
2795 2903 4.699257 ACAGCAATCAGGATCTGAAGAAAC 59.301 41.667 1.53 0.00 44.04 2.78
2796 2904 4.698780 CACAGCAATCAGGATCTGAAGAAA 59.301 41.667 1.53 0.00 44.04 2.52
2822 2930 3.002656 AGAAATCATGGCGATACAAAGCG 59.997 43.478 0.00 0.00 37.63 4.68
2830 2938 5.543507 AGTAAGAGAGAAATCATGGCGAT 57.456 39.130 0.00 0.00 35.12 4.58
2843 2951 5.529060 ACCAAGCAACTGAAAAGTAAGAGAG 59.471 40.000 0.00 0.00 0.00 3.20
3569 3688 9.944663 TGAATAACTGACACTTTTACAATGTTC 57.055 29.630 0.00 0.00 0.00 3.18
3630 3750 4.212716 ACTGGATGGATTGATGGATGTTG 58.787 43.478 0.00 0.00 0.00 3.33
3640 3760 3.209410 GCCTCTGTAACTGGATGGATTG 58.791 50.000 0.00 0.00 0.00 2.67
3641 3761 2.158900 CGCCTCTGTAACTGGATGGATT 60.159 50.000 0.00 0.00 0.00 3.01
3681 3801 4.184629 GTGGAGCGAGAGTTTAATGTGAT 58.815 43.478 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.