Multiple sequence alignment - TraesCS7A01G405300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G405300 chr7A 100.000 3950 0 0 1 3950 589120195 589124144 0.000000e+00 7295
1 TraesCS7A01G405300 chr7A 87.486 887 92 13 48 919 103213259 103214141 0.000000e+00 1005
2 TraesCS7A01G405300 chr7B 96.039 2954 104 8 1003 3950 546011325 546014271 0.000000e+00 4795
3 TraesCS7A01G405300 chr7B 93.333 105 2 3 910 1013 546010180 546010280 2.460000e-32 150
4 TraesCS7A01G405300 chr7D 94.607 2967 119 13 994 3950 515464522 515467457 0.000000e+00 4554
5 TraesCS7A01G405300 chr3A 87.232 885 95 11 48 919 703933637 703932758 0.000000e+00 992
6 TraesCS7A01G405300 chr5D 87.703 862 89 12 70 919 432148030 432148886 0.000000e+00 989
7 TraesCS7A01G405300 chr5D 87.400 873 92 12 48 911 193596996 193596133 0.000000e+00 987
8 TraesCS7A01G405300 chr3D 86.748 898 94 17 35 916 394152660 394153548 0.000000e+00 976
9 TraesCS7A01G405300 chr6A 87.663 843 90 8 77 909 508176709 508175871 0.000000e+00 968
10 TraesCS7A01G405300 chr5B 85.948 918 109 14 1 909 434948454 434949360 0.000000e+00 963
11 TraesCS7A01G405300 chr4A 86.303 898 104 12 32 919 544384720 544383832 0.000000e+00 959
12 TraesCS7A01G405300 chr2D 85.484 930 112 11 1 919 81591842 81592759 0.000000e+00 948


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G405300 chr7A 589120195 589124144 3949 False 7295.0 7295 100.000 1 3950 1 chr7A.!!$F2 3949
1 TraesCS7A01G405300 chr7A 103213259 103214141 882 False 1005.0 1005 87.486 48 919 1 chr7A.!!$F1 871
2 TraesCS7A01G405300 chr7B 546010180 546014271 4091 False 2472.5 4795 94.686 910 3950 2 chr7B.!!$F1 3040
3 TraesCS7A01G405300 chr7D 515464522 515467457 2935 False 4554.0 4554 94.607 994 3950 1 chr7D.!!$F1 2956
4 TraesCS7A01G405300 chr3A 703932758 703933637 879 True 992.0 992 87.232 48 919 1 chr3A.!!$R1 871
5 TraesCS7A01G405300 chr5D 432148030 432148886 856 False 989.0 989 87.703 70 919 1 chr5D.!!$F1 849
6 TraesCS7A01G405300 chr5D 193596133 193596996 863 True 987.0 987 87.400 48 911 1 chr5D.!!$R1 863
7 TraesCS7A01G405300 chr3D 394152660 394153548 888 False 976.0 976 86.748 35 916 1 chr3D.!!$F1 881
8 TraesCS7A01G405300 chr6A 508175871 508176709 838 True 968.0 968 87.663 77 909 1 chr6A.!!$R1 832
9 TraesCS7A01G405300 chr5B 434948454 434949360 906 False 963.0 963 85.948 1 909 1 chr5B.!!$F1 908
10 TraesCS7A01G405300 chr4A 544383832 544384720 888 True 959.0 959 86.303 32 919 1 chr4A.!!$R1 887
11 TraesCS7A01G405300 chr2D 81591842 81592759 917 False 948.0 948 85.484 1 919 1 chr2D.!!$F1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 63 1.000060 GGGGCGAGGGTTGTTAAAAAC 60.000 52.381 0.00 0.00 0.00 2.43 F
1619 2714 0.251916 ATCCTTGTCCGCGGATTCAA 59.748 50.000 33.58 28.19 36.66 2.69 F
2064 3159 0.036732 TGCTTGGAGGTTACTGCCAG 59.963 55.000 0.00 0.00 33.55 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2940 0.676184 TCCCTAGCGCTGTCATCATC 59.324 55.000 22.9 0.0 0.00 2.92 R
2888 3983 1.747355 CTGAAGCTGCCCCATTAACAG 59.253 52.381 0.0 0.0 34.48 3.16 R
3404 4507 2.533266 TAGCATGTTAGCCTGCTAGC 57.467 50.000 8.1 8.1 43.17 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 58 2.295602 GGAGGGGCGAGGGTTGTTA 61.296 63.158 0.00 0.00 0.00 2.41
57 63 1.000060 GGGGCGAGGGTTGTTAAAAAC 60.000 52.381 0.00 0.00 0.00 2.43
58 64 1.682323 GGGCGAGGGTTGTTAAAAACA 59.318 47.619 10.65 0.00 40.21 2.83
59 65 2.297880 GGGCGAGGGTTGTTAAAAACAT 59.702 45.455 10.65 0.00 41.79 2.71
61 67 4.373527 GGCGAGGGTTGTTAAAAACATTT 58.626 39.130 10.65 0.00 41.79 2.32
114 120 9.439500 ACGGTATTATACACACAATAAAGTTGT 57.561 29.630 4.67 0.00 0.00 3.32
153 160 1.688197 ACGGTAACTTTTGACCTCGGA 59.312 47.619 0.00 0.00 33.21 4.55
196 203 9.969001 AACATACCCTAATAACTTGTGTGTAAT 57.031 29.630 0.00 0.00 32.14 1.89
244 251 7.982354 ACTGAGCTGATAACTTACTTAATCCAC 59.018 37.037 0.00 0.00 0.00 4.02
273 280 5.989168 GGTAACTTTTTGACCAGGGAAAATG 59.011 40.000 0.00 1.37 33.16 2.32
287 299 6.876789 CCAGGGAAAATGTTGTTAAAATACCC 59.123 38.462 0.00 0.00 0.00 3.69
290 302 7.293771 AGGGAAAATGTTGTTAAAATACCCCTT 59.706 33.333 0.00 0.00 34.53 3.95
460 476 2.738846 ACAAAGCTGATAACTCACTGCG 59.261 45.455 0.00 0.00 36.40 5.18
466 486 3.733224 GCTGATAACTCACTGCGTCATAG 59.267 47.826 0.00 0.00 0.00 2.23
520 543 5.762218 TCGAAAACATACCCCGAAACTTTTA 59.238 36.000 0.00 0.00 0.00 1.52
528 551 8.680001 ACATACCCCGAAACTTTTATGTAAATC 58.320 33.333 0.00 0.00 30.26 2.17
594 618 7.453752 AGTCTAGATGTAGTAACTTTTGGTCCA 59.546 37.037 0.00 0.00 0.00 4.02
595 619 8.092687 GTCTAGATGTAGTAACTTTTGGTCCAA 58.907 37.037 0.00 0.00 0.00 3.53
688 713 6.633500 ATGAAGACAACTTTTCAATCGGAA 57.367 33.333 0.00 0.00 36.93 4.30
790 821 7.372451 GCATATATGCGTGTAATTAAAGGGA 57.628 36.000 21.33 0.00 44.67 4.20
890 928 7.246674 TGTCTATTGCTAAAATCCGAACATC 57.753 36.000 0.00 0.00 0.00 3.06
997 1035 2.406616 CGGCCCCATGAAAAGTCCG 61.407 63.158 0.00 0.00 0.00 4.79
1018 2111 6.092807 GTCCGCTATGAAATTTCAAGTCTCTT 59.907 38.462 23.91 8.96 41.13 2.85
1055 2150 3.364068 CCTCCGCGAGAAAAAGAAAAGAC 60.364 47.826 8.23 0.00 0.00 3.01
1494 2589 2.685017 TCGCTCAGGTCCATGGCT 60.685 61.111 6.96 0.00 0.00 4.75
1619 2714 0.251916 ATCCTTGTCCGCGGATTCAA 59.748 50.000 33.58 28.19 36.66 2.69
1659 2754 0.744414 GTGCGCTGGTGGACATGTAT 60.744 55.000 9.73 0.00 0.00 2.29
1683 2778 3.050275 GCGGCTTCACCAGGTGAC 61.050 66.667 22.87 11.65 42.60 3.67
1719 2814 4.179579 GAAATGCGCGCCCCTGAC 62.180 66.667 30.77 11.35 0.00 3.51
1734 2829 1.686587 CCTGACGGGATATGCTACACA 59.313 52.381 0.00 0.00 37.23 3.72
1738 2833 1.961394 ACGGGATATGCTACACATCGT 59.039 47.619 0.00 0.00 40.38 3.73
1762 2857 0.527565 ATCAGCATTTGTGCGGAACC 59.472 50.000 7.28 0.00 41.79 3.62
1769 2864 1.982660 TTTGTGCGGAACCATTGGTA 58.017 45.000 9.20 0.00 33.12 3.25
1776 2871 2.682563 GCGGAACCATTGGTATGAGGAA 60.683 50.000 9.20 0.00 33.12 3.36
1779 2874 2.736670 ACCATTGGTATGAGGAAGCC 57.263 50.000 6.54 0.00 32.11 4.35
1801 2896 1.192428 GAGGTGGTTCCGGACTATGT 58.808 55.000 1.83 0.00 41.99 2.29
1823 2918 0.394352 ATGACGAATGGGGTTGAGCC 60.394 55.000 0.00 0.00 0.00 4.70
1845 2940 0.244450 ATGGCTGCACATTTGGTTCG 59.756 50.000 0.50 0.00 0.00 3.95
1877 2972 1.407575 GCTAGGGAACTTGAAGAGGGC 60.408 57.143 0.00 0.00 43.67 5.19
1906 3001 1.079612 CGTGAGGCACATGCTCAGA 60.080 57.895 3.48 0.00 41.70 3.27
1917 3012 0.390860 ATGCTCAGATACTGACCCGC 59.609 55.000 0.00 0.00 35.39 6.13
1974 3069 0.315886 TCGACATGTACGCCAAGTGT 59.684 50.000 0.00 0.00 0.00 3.55
2019 3114 2.362077 GGTGTTTGACAAGATGCAGGTT 59.638 45.455 0.00 0.00 0.00 3.50
2058 3153 0.237498 GTGCGTTGCTTGGAGGTTAC 59.763 55.000 0.00 0.00 0.00 2.50
2062 3157 0.881796 GTTGCTTGGAGGTTACTGCC 59.118 55.000 0.00 0.00 33.55 4.85
2064 3159 0.036732 TGCTTGGAGGTTACTGCCAG 59.963 55.000 0.00 0.00 33.55 4.85
2067 3162 2.619074 GCTTGGAGGTTACTGCCAGAAT 60.619 50.000 0.00 0.00 30.60 2.40
2068 3163 2.787473 TGGAGGTTACTGCCAGAATG 57.213 50.000 0.00 0.00 33.55 2.67
2117 3212 5.600898 TGTTTCGACAGATGGATAGGGAATA 59.399 40.000 0.00 0.00 0.00 1.75
2163 3258 0.698238 TTCTAAGGGCATGTGCTGGT 59.302 50.000 4.84 0.00 41.70 4.00
2176 3271 4.991153 TGTGCTGGTCTATCTTCTGTAG 57.009 45.455 0.00 0.00 0.00 2.74
2178 3273 5.016831 TGTGCTGGTCTATCTTCTGTAGAA 58.983 41.667 0.00 0.00 36.22 2.10
2307 3402 7.910304 ACTATGCTTATAGAGTTTTTGAAGCG 58.090 34.615 1.62 0.00 41.69 4.68
2377 3472 0.106868 TCAGAATGGCCATGCTGAGG 60.107 55.000 41.70 24.26 46.01 3.86
2888 3983 6.208644 ACAGAAGCAAACAACATATGTCAAC 58.791 36.000 9.23 0.00 42.99 3.18
3010 4109 5.359009 CCTGTGATTGGCTTATGAGTCATTT 59.641 40.000 11.68 0.00 37.35 2.32
3030 4129 5.726980 TTTGGAGTTTGGGATGAATTCTG 57.273 39.130 7.05 0.00 0.00 3.02
3112 4211 3.491447 GCTGGTGTCTTGCAAAGTTCAAT 60.491 43.478 0.00 0.00 46.34 2.57
3195 4294 3.791789 GCATATGTGTTTATGTGGGTGCG 60.792 47.826 4.29 0.00 33.07 5.34
3302 4403 9.722056 GTCTACTTATTGGCTTCATTTGTAATG 57.278 33.333 0.00 0.00 0.00 1.90
3343 4444 7.284489 TCTGTACTTGGCTCTGTAATTGTTTTT 59.716 33.333 0.00 0.00 0.00 1.94
3375 4478 4.081031 TCTGCTCAGAGAGATGAAATGCTT 60.081 41.667 0.00 0.00 32.82 3.91
3476 4579 9.969001 AGAATATTTTTGTAGGGTAGCTTTGTA 57.031 29.630 0.00 0.00 0.00 2.41
3514 4617 2.547855 GGCATCTGTGTGTCACTGTGTA 60.548 50.000 7.79 0.00 35.37 2.90
3515 4618 2.733552 GCATCTGTGTGTCACTGTGTAG 59.266 50.000 7.79 0.00 35.37 2.74
3516 4619 3.320626 CATCTGTGTGTCACTGTGTAGG 58.679 50.000 7.79 0.00 35.37 3.18
3518 4621 1.412710 CTGTGTGTCACTGTGTAGGGT 59.587 52.381 7.79 0.00 35.11 4.34
3539 4642 8.209917 AGGGTAGCTTGAATTAATCTTTAACG 57.790 34.615 0.00 0.00 0.00 3.18
3577 4680 5.051891 AGAATCTCAAAACATTTCCTGCG 57.948 39.130 0.00 0.00 0.00 5.18
3597 4700 6.188400 TGCGTATTATGCTTGATTTGAACA 57.812 33.333 9.21 0.00 0.00 3.18
3678 4781 4.160642 TGAGGAATAGTAGTCGGTGCTA 57.839 45.455 0.00 0.00 0.00 3.49
3733 4836 8.225603 ACTGAAATCACAGAACATTGTTAGTT 57.774 30.769 1.15 0.00 40.63 2.24
3742 4845 5.676744 CAGAACATTGTTAGTTGTTGTCACG 59.323 40.000 1.15 0.00 36.25 4.35
3755 4858 6.586463 AGTTGTTGTCACGAGTAGTAATGATG 59.414 38.462 0.00 0.00 0.00 3.07
3762 4865 5.532779 TCACGAGTAGTAATGATGAGCATCT 59.467 40.000 11.37 0.00 38.60 2.90
3763 4866 6.710744 TCACGAGTAGTAATGATGAGCATCTA 59.289 38.462 11.37 0.00 38.60 1.98
3905 5008 5.628193 GCATTTTGATGTGTGTTTGAGAGAG 59.372 40.000 0.00 0.00 0.00 3.20
3906 5009 6.513884 GCATTTTGATGTGTGTTTGAGAGAGA 60.514 38.462 0.00 0.00 0.00 3.10
3907 5010 6.609237 TTTTGATGTGTGTTTGAGAGAGAG 57.391 37.500 0.00 0.00 0.00 3.20
3935 5038 4.236527 AGGGTTAAGCCTTAGACAATGG 57.763 45.455 20.62 0.00 37.43 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.977171 AAAATGTTTTTAACAACCCTCGC 57.023 34.783 2.17 0.00 45.86 5.03
61 67 4.436242 TTGCACACAAAGTACCGAAAAA 57.564 36.364 0.00 0.00 31.21 1.94
114 120 4.121317 CCGTGGTGTTTGTAGTGAGTTAA 58.879 43.478 0.00 0.00 0.00 2.01
215 222 7.596749 TTAAGTAAGTTATCAGCTCAGTTGC 57.403 36.000 0.00 0.00 0.00 4.17
220 227 7.764443 GTGTGGATTAAGTAAGTTATCAGCTCA 59.236 37.037 0.00 0.00 0.00 4.26
244 251 3.242936 CCTGGTCAAAAAGTTACCACGTG 60.243 47.826 9.08 9.08 38.36 4.49
383 399 7.048512 TCGGGGTATGTTTTTCAACAATTTTT 58.951 30.769 0.00 0.00 46.17 1.94
528 551 8.699749 CGTATGTCATACATAAGTTACCATGTG 58.300 37.037 20.36 0.00 42.15 3.21
532 555 7.998580 TCACGTATGTCATACATAAGTTACCA 58.001 34.615 20.36 0.38 46.44 3.25
570 593 7.786046 TGGACCAAAAGTTACTACATCTAGA 57.214 36.000 0.00 0.00 0.00 2.43
622 646 7.553881 GAGATTTTCGAAACTCAATCCCATA 57.446 36.000 24.67 2.49 0.00 2.74
665 690 6.438763 GTTCCGATTGAAAAGTTGTCTTCAT 58.561 36.000 0.00 0.00 33.94 2.57
675 700 1.796459 ACCGTCGTTCCGATTGAAAAG 59.204 47.619 0.00 0.00 38.42 2.27
688 713 2.228138 TTTGTAGCTCAAACCGTCGT 57.772 45.000 0.00 0.00 40.56 4.34
776 807 4.395231 GTGCACTCCTCCCTTTAATTACAC 59.605 45.833 10.32 0.00 0.00 2.90
790 821 2.325583 TTTCTTTCACGTGCACTCCT 57.674 45.000 16.19 0.00 0.00 3.69
864 902 6.837992 TGTTCGGATTTTAGCAATAGACAAC 58.162 36.000 0.00 0.00 0.00 3.32
931 969 9.768662 CAGTAGTACTGTTTTTCTTTACCCTTA 57.231 33.333 20.29 0.00 41.19 2.69
954 992 3.443681 CGATTGAGGCCAAAATTACCAGT 59.556 43.478 5.01 0.00 35.67 4.00
955 993 3.181487 CCGATTGAGGCCAAAATTACCAG 60.181 47.826 5.01 0.00 35.67 4.00
956 994 2.757868 CCGATTGAGGCCAAAATTACCA 59.242 45.455 5.01 0.00 35.67 3.25
997 1035 8.909671 CACAAAAGAGACTTGAAATTTCATAGC 58.090 33.333 21.10 12.76 37.00 2.97
1018 2111 0.961019 GGAGGAATGCAGTGCACAAA 59.039 50.000 22.44 3.90 43.04 2.83
1116 2211 1.153349 GGACAAGGTGATCCTCGGC 60.153 63.158 0.00 0.00 44.35 5.54
1647 2742 1.321474 CATGGCCATACATGTCCACC 58.679 55.000 20.30 0.43 42.48 4.61
1674 2769 3.515316 CTTCCGTGCGTCACCTGGT 62.515 63.158 0.00 0.00 0.00 4.00
1719 2814 2.724977 ACGATGTGTAGCATATCCCG 57.275 50.000 0.00 0.00 38.06 5.14
1762 2857 1.942657 CACGGCTTCCTCATACCAATG 59.057 52.381 0.00 0.00 0.00 2.82
1769 2864 1.599047 CACCTCACGGCTTCCTCAT 59.401 57.895 0.00 0.00 0.00 2.90
1776 2871 4.003788 CGGAACCACCTCACGGCT 62.004 66.667 0.00 0.00 36.31 5.52
1779 2874 1.246056 TAGTCCGGAACCACCTCACG 61.246 60.000 5.23 0.00 36.31 4.35
1785 2880 2.754946 TGAACATAGTCCGGAACCAC 57.245 50.000 5.23 0.00 0.00 4.16
1801 2896 2.710377 CTCAACCCCATTCGTCATGAA 58.290 47.619 0.00 0.00 41.81 2.57
1823 2918 1.140161 CCAAATGTGCAGCCATCCG 59.860 57.895 0.00 0.00 0.00 4.18
1845 2940 0.676184 TCCCTAGCGCTGTCATCATC 59.324 55.000 22.90 0.00 0.00 2.92
1890 2985 2.113807 AGTATCTGAGCATGTGCCTCA 58.886 47.619 0.57 4.51 43.38 3.86
1917 3012 1.890876 TCACATTCCCACAAAGACCG 58.109 50.000 0.00 0.00 0.00 4.79
1974 3069 4.424711 GCCTCCAACATCGCCCCA 62.425 66.667 0.00 0.00 0.00 4.96
2019 3114 3.758023 CACACCATGAAACTGCATTCCTA 59.242 43.478 0.00 0.00 0.00 2.94
2058 3153 1.148157 CGTACTCCGCATTCTGGCAG 61.148 60.000 8.58 8.58 0.00 4.85
2062 3157 2.455032 CTTCTCGTACTCCGCATTCTG 58.545 52.381 0.00 0.00 36.19 3.02
2064 3159 1.134560 ACCTTCTCGTACTCCGCATTC 59.865 52.381 0.00 0.00 36.19 2.67
2067 3162 0.524862 GAACCTTCTCGTACTCCGCA 59.475 55.000 0.00 0.00 36.19 5.69
2068 3163 0.810016 AGAACCTTCTCGTACTCCGC 59.190 55.000 0.00 0.00 36.19 5.54
2092 3187 3.772572 TCCCTATCCATCTGTCGAAACAA 59.227 43.478 0.00 0.00 34.24 2.83
2117 3212 3.259374 CCCCAAGCTATATGAGTCATCGT 59.741 47.826 9.42 2.52 0.00 3.73
2163 3258 7.674348 TCTTTTCCTGGTTCTACAGAAGATAGA 59.326 37.037 0.00 0.00 40.97 1.98
2176 3271 4.142293 GCAATGGATCTCTTTTCCTGGTTC 60.142 45.833 0.00 0.00 34.17 3.62
2178 3273 3.359950 GCAATGGATCTCTTTTCCTGGT 58.640 45.455 0.00 0.00 34.17 4.00
2377 3472 4.963953 CCGATTGAACAAATTGATAGCGTC 59.036 41.667 0.00 0.00 31.96 5.19
2888 3983 1.747355 CTGAAGCTGCCCCATTAACAG 59.253 52.381 0.00 0.00 34.48 3.16
3010 4109 3.700538 CCAGAATTCATCCCAAACTCCA 58.299 45.455 8.44 0.00 0.00 3.86
3112 4211 3.443681 TCATGTCTCTATCAACTGACGCA 59.556 43.478 0.00 0.00 32.64 5.24
3195 4294 2.694628 TGCCATGTCAAATAAGGGCATC 59.305 45.455 0.00 0.00 45.69 3.91
3404 4507 2.533266 TAGCATGTTAGCCTGCTAGC 57.467 50.000 8.10 8.10 43.17 3.42
3514 4617 7.827729 ACGTTAAAGATTAATTCAAGCTACCCT 59.172 33.333 0.00 0.00 31.02 4.34
3515 4618 7.982224 ACGTTAAAGATTAATTCAAGCTACCC 58.018 34.615 0.00 0.00 31.02 3.69
3539 4642 7.854557 TGAGATTCTTGCATATGCCATATAC 57.145 36.000 24.54 12.01 41.18 1.47
3577 4680 8.853345 CAACTGTGTTCAAATCAAGCATAATAC 58.147 33.333 0.00 0.00 0.00 1.89
3597 4700 4.580167 ACATGCATCAAACTGTACAACTGT 59.420 37.500 0.00 0.00 0.00 3.55
3678 4781 8.934023 TGAATGTTAAGAGGAAATAAACAGGT 57.066 30.769 0.00 0.00 33.90 4.00
3733 4836 6.262193 TCATCATTACTACTCGTGACAACA 57.738 37.500 0.00 0.00 0.00 3.33
3771 4874 6.376299 TGGCAGGCAATAGAATCATTGATATC 59.624 38.462 0.00 0.00 38.01 1.63
3779 4882 3.136992 TGAGATGGCAGGCAATAGAATCA 59.863 43.478 0.00 0.00 0.00 2.57
3784 4887 4.142790 AGAATTGAGATGGCAGGCAATAG 58.857 43.478 0.00 0.00 31.30 1.73
3793 4896 3.568853 CCATGGAAGAGAATTGAGATGGC 59.431 47.826 5.56 0.00 0.00 4.40
3880 4983 4.619973 TCTCAAACACACATCAAAATGCC 58.380 39.130 0.00 0.00 36.26 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.