Multiple sequence alignment - TraesCS7A01G405000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G405000 chr7A 100.000 3475 0 0 1 3475 588741431 588737957 0.000000e+00 6418
1 TraesCS7A01G405000 chr7A 96.546 1882 42 8 984 2864 587518481 587520340 0.000000e+00 3094
2 TraesCS7A01G405000 chr7A 96.158 1718 56 1 758 2475 586693931 586692224 0.000000e+00 2798
3 TraesCS7A01G405000 chr7A 92.092 607 42 3 2874 3475 587520322 587520927 0.000000e+00 850
4 TraesCS7A01G405000 chr7A 90.630 587 47 6 2893 3475 117364278 117363696 0.000000e+00 773
5 TraesCS7A01G405000 chr7A 83.956 455 48 20 545 994 588750974 588750540 2.500000e-111 412
6 TraesCS7A01G405000 chr7D 95.124 2092 77 13 771 2860 514092143 514094211 0.000000e+00 3275
7 TraesCS7A01G405000 chr7D 91.179 1950 111 37 546 2475 513311523 513313431 0.000000e+00 2591
8 TraesCS7A01G405000 chr7D 96.698 969 26 3 1660 2628 515237029 515236067 0.000000e+00 1607
9 TraesCS7A01G405000 chr7D 96.491 969 28 3 1660 2628 515220823 515219861 0.000000e+00 1596
10 TraesCS7A01G405000 chr7D 94.052 891 35 6 771 1661 515238206 515237334 0.000000e+00 1336
11 TraesCS7A01G405000 chr7D 93.827 891 37 6 771 1661 515222000 515221128 0.000000e+00 1325
12 TraesCS7A01G405000 chr7D 90.630 587 51 4 2890 3475 89519273 89519856 0.000000e+00 776
13 TraesCS7A01G405000 chr7D 91.453 234 19 1 2627 2860 515219767 515219535 1.560000e-83 320
14 TraesCS7A01G405000 chr7D 91.026 234 21 0 2627 2860 515235973 515235740 2.010000e-82 316
15 TraesCS7A01G405000 chr7D 90.000 240 13 9 584 815 515222530 515222294 2.030000e-77 300
16 TraesCS7A01G405000 chr7D 90.000 240 13 9 584 815 515238736 515238500 2.030000e-77 300
17 TraesCS7A01G405000 chr7D 88.210 229 14 11 595 815 514090472 514090695 9.570000e-66 261
18 TraesCS7A01G405000 chr7D 93.103 116 6 2 2745 2860 568402845 568402732 5.960000e-38 169
19 TraesCS7A01G405000 chr7B 91.864 1942 112 27 545 2465 544880710 544882626 0.000000e+00 2669
20 TraesCS7A01G405000 chr7B 93.894 1736 85 11 746 2465 545975530 545973800 0.000000e+00 2599
21 TraesCS7A01G405000 chr7B 91.241 1918 112 31 564 2465 544981827 544983704 0.000000e+00 2560
22 TraesCS7A01G405000 chr7B 92.350 183 8 6 595 777 544966589 544966765 4.450000e-64 255
23 TraesCS7A01G405000 chr7B 81.115 323 52 7 552 872 544879350 544879665 2.070000e-62 250
24 TraesCS7A01G405000 chr2A 96.296 513 7 4 1 512 520425281 520425782 0.000000e+00 832
25 TraesCS7A01G405000 chr2D 91.552 580 45 4 2899 3475 8429150 8429728 0.000000e+00 797
26 TraesCS7A01G405000 chr2D 92.131 521 37 4 4 520 561763798 561763278 0.000000e+00 732
27 TraesCS7A01G405000 chr2D 96.296 108 4 0 2750 2857 100433590 100433697 9.910000e-41 178
28 TraesCS7A01G405000 chr5D 91.267 584 49 2 2893 3475 46062109 46061527 0.000000e+00 795
29 TraesCS7A01G405000 chr5D 90.753 584 50 4 2894 3475 481974034 481974615 0.000000e+00 776
30 TraesCS7A01G405000 chr3A 90.594 606 40 9 2882 3475 340280720 340281320 0.000000e+00 787
31 TraesCS7A01G405000 chr3B 91.207 580 48 3 2897 3474 99674148 99673570 0.000000e+00 785
32 TraesCS7A01G405000 chr2B 90.725 593 49 4 2888 3475 29219868 29220459 0.000000e+00 785
33 TraesCS7A01G405000 chrUn 90.154 518 41 3 1 511 277177932 277178446 0.000000e+00 665
34 TraesCS7A01G405000 chrUn 90.154 518 41 3 1 511 300682023 300681509 0.000000e+00 665
35 TraesCS7A01G405000 chrUn 89.504 524 48 2 1 517 277179528 277180051 0.000000e+00 656
36 TraesCS7A01G405000 chrUn 89.504 524 48 2 1 517 300680427 300679904 0.000000e+00 656
37 TraesCS7A01G405000 chr4D 89.883 514 49 3 1 512 495967050 495967562 0.000000e+00 658
38 TraesCS7A01G405000 chr1A 87.146 529 65 3 2 528 510309542 510310069 6.420000e-167 597
39 TraesCS7A01G405000 chr6A 86.116 533 69 5 2 532 90094751 90094222 1.400000e-158 569


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G405000 chr7A 588737957 588741431 3474 True 6418.00 6418 100.00000 1 3475 1 chr7A.!!$R3 3474
1 TraesCS7A01G405000 chr7A 586692224 586693931 1707 True 2798.00 2798 96.15800 758 2475 1 chr7A.!!$R2 1717
2 TraesCS7A01G405000 chr7A 587518481 587520927 2446 False 1972.00 3094 94.31900 984 3475 2 chr7A.!!$F1 2491
3 TraesCS7A01G405000 chr7A 117363696 117364278 582 True 773.00 773 90.63000 2893 3475 1 chr7A.!!$R1 582
4 TraesCS7A01G405000 chr7D 513311523 513313431 1908 False 2591.00 2591 91.17900 546 2475 1 chr7D.!!$F2 1929
5 TraesCS7A01G405000 chr7D 514090472 514094211 3739 False 1768.00 3275 91.66700 595 2860 2 chr7D.!!$F3 2265
6 TraesCS7A01G405000 chr7D 515235740 515238736 2996 True 889.75 1607 92.94400 584 2860 4 chr7D.!!$R3 2276
7 TraesCS7A01G405000 chr7D 515219535 515222530 2995 True 885.25 1596 92.94275 584 2860 4 chr7D.!!$R2 2276
8 TraesCS7A01G405000 chr7D 89519273 89519856 583 False 776.00 776 90.63000 2890 3475 1 chr7D.!!$F1 585
9 TraesCS7A01G405000 chr7B 545973800 545975530 1730 True 2599.00 2599 93.89400 746 2465 1 chr7B.!!$R1 1719
10 TraesCS7A01G405000 chr7B 544981827 544983704 1877 False 2560.00 2560 91.24100 564 2465 1 chr7B.!!$F2 1901
11 TraesCS7A01G405000 chr7B 544879350 544882626 3276 False 1459.50 2669 86.48950 545 2465 2 chr7B.!!$F3 1920
12 TraesCS7A01G405000 chr2A 520425281 520425782 501 False 832.00 832 96.29600 1 512 1 chr2A.!!$F1 511
13 TraesCS7A01G405000 chr2D 8429150 8429728 578 False 797.00 797 91.55200 2899 3475 1 chr2D.!!$F1 576
14 TraesCS7A01G405000 chr2D 561763278 561763798 520 True 732.00 732 92.13100 4 520 1 chr2D.!!$R1 516
15 TraesCS7A01G405000 chr5D 46061527 46062109 582 True 795.00 795 91.26700 2893 3475 1 chr5D.!!$R1 582
16 TraesCS7A01G405000 chr5D 481974034 481974615 581 False 776.00 776 90.75300 2894 3475 1 chr5D.!!$F1 581
17 TraesCS7A01G405000 chr3A 340280720 340281320 600 False 787.00 787 90.59400 2882 3475 1 chr3A.!!$F1 593
18 TraesCS7A01G405000 chr3B 99673570 99674148 578 True 785.00 785 91.20700 2897 3474 1 chr3B.!!$R1 577
19 TraesCS7A01G405000 chr2B 29219868 29220459 591 False 785.00 785 90.72500 2888 3475 1 chr2B.!!$F1 587
20 TraesCS7A01G405000 chrUn 277177932 277180051 2119 False 660.50 665 89.82900 1 517 2 chrUn.!!$F1 516
21 TraesCS7A01G405000 chrUn 300679904 300682023 2119 True 660.50 665 89.82900 1 517 2 chrUn.!!$R1 516
22 TraesCS7A01G405000 chr4D 495967050 495967562 512 False 658.00 658 89.88300 1 512 1 chr4D.!!$F1 511
23 TraesCS7A01G405000 chr1A 510309542 510310069 527 False 597.00 597 87.14600 2 528 1 chr1A.!!$F1 526
24 TraesCS7A01G405000 chr6A 90094222 90094751 529 True 569.00 569 86.11600 2 532 1 chr6A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 4814 0.747852 GATCAAGGACCGAGGAGGAC 59.252 60.0 0.00 0.0 45.00 3.85 F
1103 4933 0.177604 AAGAAGGAGAGCGCAGATGG 59.822 55.0 11.47 0.0 0.00 3.51 F
1105 4935 0.529555 GAAGGAGAGCGCAGATGGTC 60.530 60.0 11.47 0.0 36.63 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 6504 0.969149 TTCTTCTCGGAGCAGAGCAA 59.031 50.000 7.40 0.00 38.12 3.91 R
2348 6530 1.003003 TCGGACATTGTGATGCCTTCA 59.997 47.619 0.00 0.00 36.72 3.02 R
2692 6969 1.062440 TGCTCATGCTAATCAAACGCG 59.938 47.619 3.53 3.53 40.48 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
432 2038 1.594862 GAGATCGCGGGTTGAATTCTG 59.405 52.381 6.13 0.00 0.00 3.02
470 2076 1.403323 TCTGCAAAAATGCACACGACA 59.597 42.857 0.00 0.00 40.23 4.35
482 2088 1.134367 CACACGACATACGACCAGGAT 59.866 52.381 0.00 0.00 45.77 3.24
568 2843 9.500785 CCTTCTCTCTTTCTCTTGTATCTTTTT 57.499 33.333 0.00 0.00 0.00 1.94
586 2861 7.759489 TCTTTTTATTACATGTGCTTGTCCT 57.241 32.000 9.11 0.00 0.00 3.85
643 4457 9.341078 ACCTTTTTATTTTCATTTGTTCATGCT 57.659 25.926 0.00 0.00 0.00 3.79
652 4466 8.484641 TTTCATTTGTTCATGCTTAAAACACA 57.515 26.923 0.00 0.00 32.94 3.72
653 4467 7.462109 TCATTTGTTCATGCTTAAAACACAC 57.538 32.000 0.00 0.00 32.94 3.82
659 4473 8.795786 TGTTCATGCTTAAAACACACTATTTC 57.204 30.769 0.00 0.00 0.00 2.17
660 4474 8.409371 TGTTCATGCTTAAAACACACTATTTCA 58.591 29.630 0.00 0.00 0.00 2.69
667 4481 9.334693 GCTTAAAACACACTATTTCAGATGAAG 57.665 33.333 0.00 0.00 35.21 3.02
677 4491 9.347240 CACTATTTCAGATGAAGTATTTGGGAT 57.653 33.333 0.00 0.00 35.21 3.85
678 4492 9.566432 ACTATTTCAGATGAAGTATTTGGGATC 57.434 33.333 0.00 0.00 35.21 3.36
682 4496 6.962182 TCAGATGAAGTATTTGGGATCTGTT 58.038 36.000 0.00 0.00 38.52 3.16
683 4497 6.825213 TCAGATGAAGTATTTGGGATCTGTTG 59.175 38.462 0.00 0.00 38.52 3.33
684 4498 6.039047 CAGATGAAGTATTTGGGATCTGTTGG 59.961 42.308 0.00 0.00 34.59 3.77
685 4499 5.512942 TGAAGTATTTGGGATCTGTTGGA 57.487 39.130 0.00 0.00 0.00 3.53
686 4500 5.500234 TGAAGTATTTGGGATCTGTTGGAG 58.500 41.667 0.00 0.00 0.00 3.86
687 4501 5.250543 TGAAGTATTTGGGATCTGTTGGAGA 59.749 40.000 0.00 0.00 34.25 3.71
688 4502 5.983333 AGTATTTGGGATCTGTTGGAGAT 57.017 39.130 0.00 0.00 44.78 2.75
689 4503 5.688807 AGTATTTGGGATCTGTTGGAGATG 58.311 41.667 0.00 0.00 41.91 2.90
690 4504 2.425143 TTGGGATCTGTTGGAGATGC 57.575 50.000 0.00 0.00 46.34 3.91
691 4505 1.588239 TGGGATCTGTTGGAGATGCT 58.412 50.000 0.00 0.00 46.30 3.79
692 4506 1.487976 TGGGATCTGTTGGAGATGCTC 59.512 52.381 0.00 0.00 46.30 4.26
713 4532 5.251182 TCCTATGTCCCATGTACGAGATA 57.749 43.478 0.00 0.00 0.00 1.98
719 4538 3.189702 GTCCCATGTACGAGATAGAGCTC 59.810 52.174 5.27 5.27 0.00 4.09
788 4613 5.021033 ACACAAGCAACATGGAATCAAAA 57.979 34.783 0.00 0.00 0.00 2.44
815 4640 5.994668 GCAAAGGTGATCCAAAAATAACCAA 59.005 36.000 0.00 0.00 33.04 3.67
823 4648 6.723515 TGATCCAAAAATAACCAATGGACAGA 59.276 34.615 6.16 0.00 42.57 3.41
915 4740 0.759959 TAAGCCGAACACTTGTCCCA 59.240 50.000 0.00 0.00 0.00 4.37
938 4764 6.239204 CCACCTGAACCGATGTGTATATAAGA 60.239 42.308 0.00 0.00 0.00 2.10
964 4791 1.078567 CTGAAGCTCCTGGCCTGAC 60.079 63.158 11.88 0.13 43.05 3.51
987 4814 0.747852 GATCAAGGACCGAGGAGGAC 59.252 60.000 0.00 0.00 45.00 3.85
1043 4870 1.346068 GAGAGTCTTGTTGCTCCTGGT 59.654 52.381 0.00 0.00 32.47 4.00
1101 4931 1.484038 AGAAGAAGGAGAGCGCAGAT 58.516 50.000 11.47 0.00 0.00 2.90
1102 4932 1.136695 AGAAGAAGGAGAGCGCAGATG 59.863 52.381 11.47 0.00 0.00 2.90
1103 4933 0.177604 AAGAAGGAGAGCGCAGATGG 59.822 55.000 11.47 0.00 0.00 3.51
1104 4934 0.975040 AGAAGGAGAGCGCAGATGGT 60.975 55.000 11.47 0.00 0.00 3.55
1105 4935 0.529555 GAAGGAGAGCGCAGATGGTC 60.530 60.000 11.47 0.00 36.63 4.02
1106 4936 1.965754 AAGGAGAGCGCAGATGGTCC 61.966 60.000 11.47 5.88 37.06 4.46
1107 4937 2.279120 GAGAGCGCAGATGGTCCG 60.279 66.667 11.47 0.00 37.06 4.79
1108 4938 3.781770 GAGAGCGCAGATGGTCCGG 62.782 68.421 11.47 0.00 37.06 5.14
1114 4944 4.457496 CAGATGGTCCGGCAGCGT 62.457 66.667 0.00 0.00 0.00 5.07
1115 4945 4.148825 AGATGGTCCGGCAGCGTC 62.149 66.667 13.93 13.93 38.62 5.19
1197 5057 2.591715 GGCACAACGGACTGCACT 60.592 61.111 3.33 0.00 34.90 4.40
1555 5415 2.653557 GGCCGTCTGGACCAAAAAT 58.346 52.632 0.00 0.00 37.27 1.82
1691 5870 8.335356 TGAAGAAATGCTGTTATATTCTTACGC 58.665 33.333 0.00 0.00 39.66 4.42
2348 6530 1.893919 GCTCCGAGAAGAAGCCCTGT 61.894 60.000 0.00 0.00 0.00 4.00
2582 6764 8.464404 TCGAGGAGATTATCTTTTTAGTTTCGA 58.536 33.333 0.00 1.34 0.00 3.71
2680 6957 5.472137 AGATTTGTAAGTTTCCTTTAGCGCA 59.528 36.000 11.47 0.00 31.89 6.09
2692 6969 1.917782 TTAGCGCATGCCCAAACGAC 61.918 55.000 13.15 0.00 44.31 4.34
2792 7070 7.448161 TCTGACTGAAATCTAATTGGCTTTCAA 59.552 33.333 17.79 6.57 37.22 2.69
2807 7085 6.771573 TGGCTTTCAATCAATTTTTCCATCT 58.228 32.000 0.00 0.00 0.00 2.90
2910 7195 6.715718 TGTATGTTTATCGAAAAAGGGTTCCA 59.284 34.615 0.00 0.00 0.00 3.53
2911 7196 6.658188 ATGTTTATCGAAAAAGGGTTCCAA 57.342 33.333 0.00 0.00 0.00 3.53
2943 7228 2.554032 CAAAGCAACCAACCGAGAGAAT 59.446 45.455 0.00 0.00 0.00 2.40
3166 7452 0.163788 GATGACGACGTTGTTGCCAG 59.836 55.000 10.42 0.00 0.00 4.85
3169 7455 2.590575 CGACGTTGTTGCCAGGGT 60.591 61.111 0.00 0.00 0.00 4.34
3172 7458 0.030235 GACGTTGTTGCCAGGGTTTC 59.970 55.000 0.00 0.00 0.00 2.78
3296 7588 2.135189 TGGATTTCTCCCGATCCCAAT 58.865 47.619 0.00 0.00 40.92 3.16
3302 7594 1.132721 TCTCCCGATCCCAATCTCCAT 60.133 52.381 0.00 0.00 0.00 3.41
3309 7601 2.875102 TCCCAATCTCCATCTCAGGA 57.125 50.000 0.00 0.00 36.00 3.86
3315 7607 2.928036 TCTCCATCTCAGGAACTCCA 57.072 50.000 0.00 0.00 34.60 3.86
3428 7723 3.071457 TGCACAATGAAGAAGAGGAGTCA 59.929 43.478 0.00 0.00 0.00 3.41
3445 7746 0.545309 TCAGGACTAGGGCAACAGCT 60.545 55.000 0.00 0.00 39.74 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.363246 GTCCCTCCTTCCTTCTTGGT 58.637 55.000 0.00 0.00 37.07 3.67
413 2019 1.207089 TCAGAATTCAACCCGCGATCT 59.793 47.619 8.23 0.00 0.00 2.75
432 2038 3.067833 CAGAAAAGTCCCTCCGTTTCTC 58.932 50.000 0.00 0.00 38.05 2.87
482 2088 5.069914 TCCCTAATAATAAAGCAGCGACTGA 59.930 40.000 10.46 0.00 32.44 3.41
540 2146 5.660864 AGATACAAGAGAAAGAGAGAAGGGG 59.339 44.000 0.00 0.00 0.00 4.79
541 2147 6.790232 AGATACAAGAGAAAGAGAGAAGGG 57.210 41.667 0.00 0.00 0.00 3.95
542 2148 9.500785 AAAAAGATACAAGAGAAAGAGAGAAGG 57.499 33.333 0.00 0.00 0.00 3.46
568 2843 9.845740 ACATAAATAGGACAAGCACATGTAATA 57.154 29.630 0.00 0.00 32.57 0.98
569 2844 8.752005 ACATAAATAGGACAAGCACATGTAAT 57.248 30.769 0.00 0.00 32.57 1.89
570 2845 8.574251 AACATAAATAGGACAAGCACATGTAA 57.426 30.769 0.00 0.00 32.57 2.41
571 2846 8.574251 AAACATAAATAGGACAAGCACATGTA 57.426 30.769 0.00 0.00 32.57 2.29
572 2847 7.466746 AAACATAAATAGGACAAGCACATGT 57.533 32.000 0.00 0.00 35.90 3.21
573 2848 9.289303 GTAAAACATAAATAGGACAAGCACATG 57.711 33.333 0.00 0.00 0.00 3.21
574 2849 9.019656 TGTAAAACATAAATAGGACAAGCACAT 57.980 29.630 0.00 0.00 0.00 3.21
575 2850 8.397575 TGTAAAACATAAATAGGACAAGCACA 57.602 30.769 0.00 0.00 0.00 4.57
576 2851 8.512138 ACTGTAAAACATAAATAGGACAAGCAC 58.488 33.333 0.00 0.00 0.00 4.40
577 2852 8.630054 ACTGTAAAACATAAATAGGACAAGCA 57.370 30.769 0.00 0.00 0.00 3.91
578 2853 9.908152 AAACTGTAAAACATAAATAGGACAAGC 57.092 29.630 0.00 0.00 0.00 4.01
617 4431 9.341078 AGCATGAACAAATGAAAATAAAAAGGT 57.659 25.926 0.00 0.00 0.00 3.50
635 4449 8.795786 TGAAATAGTGTGTTTTAAGCATGAAC 57.204 30.769 0.00 0.00 0.00 3.18
636 4450 8.845227 TCTGAAATAGTGTGTTTTAAGCATGAA 58.155 29.630 0.00 0.00 0.00 2.57
637 4451 8.389779 TCTGAAATAGTGTGTTTTAAGCATGA 57.610 30.769 0.00 0.00 0.00 3.07
652 4466 9.566432 GATCCCAAATACTTCATCTGAAATAGT 57.434 33.333 0.00 0.00 33.07 2.12
653 4467 9.790344 AGATCCCAAATACTTCATCTGAAATAG 57.210 33.333 0.00 0.00 33.07 1.73
659 4473 6.039047 CCAACAGATCCCAAATACTTCATCTG 59.961 42.308 5.40 5.40 41.95 2.90
660 4474 6.069440 TCCAACAGATCCCAAATACTTCATCT 60.069 38.462 0.00 0.00 0.00 2.90
667 4481 4.276926 GCATCTCCAACAGATCCCAAATAC 59.723 45.833 0.00 0.00 40.20 1.89
672 4486 1.487976 GAGCATCTCCAACAGATCCCA 59.512 52.381 0.00 0.00 40.20 4.37
697 4511 3.150767 AGCTCTATCTCGTACATGGGAC 58.849 50.000 0.00 0.00 0.00 4.46
763 4588 3.503363 TGATTCCATGTTGCTTGTGTCTC 59.497 43.478 0.00 0.00 0.00 3.36
788 4613 7.180051 TGGTTATTTTTGGATCACCTTTGCTAT 59.820 33.333 0.00 0.00 37.04 2.97
815 4640 3.454812 AGCTATACCGGTTTTCTGTCCAT 59.545 43.478 15.04 0.00 0.00 3.41
823 4648 2.089201 GTTGCCAGCTATACCGGTTTT 58.911 47.619 15.04 3.17 0.00 2.43
915 4740 6.971726 TCTTATATACACATCGGTTCAGGT 57.028 37.500 0.00 0.00 0.00 4.00
964 4791 1.137872 CTCCTCGGTCCTTGATCCTTG 59.862 57.143 0.00 0.00 0.00 3.61
1014 4841 2.802247 CAACAAGACTCTCATCGCAACA 59.198 45.455 0.00 0.00 0.00 3.33
1056 4883 2.332514 CCTTTGGCGGCATATGCG 59.667 61.111 21.04 16.58 43.26 4.73
1197 5057 1.198408 CTTCAGCACGTACGTACCTCA 59.802 52.381 22.34 4.01 0.00 3.86
1239 5099 3.007635 CCACATGATCCATCGATCCATG 58.992 50.000 17.76 17.76 43.82 3.66
1555 5415 4.515191 CAGTTGTAGTTCTTTTGGCAGCTA 59.485 41.667 0.00 0.00 0.00 3.32
1874 6056 1.040893 ACGAGTCGCCCATGTGGATA 61.041 55.000 13.59 0.00 37.39 2.59
2322 6504 0.969149 TTCTTCTCGGAGCAGAGCAA 59.031 50.000 7.40 0.00 38.12 3.91
2348 6530 1.003003 TCGGACATTGTGATGCCTTCA 59.997 47.619 0.00 0.00 36.72 3.02
2664 6941 1.202348 GGCATGCGCTAAAGGAAACTT 59.798 47.619 12.44 0.00 46.29 2.66
2692 6969 1.062440 TGCTCATGCTAATCAAACGCG 59.938 47.619 3.53 3.53 40.48 6.01
2880 7158 9.403583 ACCCTTTTTCGATAAACATACATACAT 57.596 29.630 0.00 0.00 0.00 2.29
2943 7228 1.904771 CCCCAGCACCTATCGTTGA 59.095 57.895 0.00 0.00 0.00 3.18
3052 7338 2.955751 GATACAGCGGTCACGAGGCC 62.956 65.000 0.00 0.00 44.60 5.19
3296 7588 2.313041 TCTGGAGTTCCTGAGATGGAGA 59.687 50.000 3.87 0.00 38.77 3.71
3309 7601 2.659610 GTGGCGAGCTCTGGAGTT 59.340 61.111 12.85 0.00 0.00 3.01
3315 7607 2.032681 GGTTTGGTGGCGAGCTCT 59.967 61.111 12.85 0.00 0.00 4.09
3428 7723 1.268283 GGAGCTGTTGCCCTAGTCCT 61.268 60.000 0.00 0.00 40.80 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.